Citrus Sinensis ID: 042265
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 490 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FLS9 | 499 | Pentatricopeptide repeat- | yes | no | 0.975 | 0.957 | 0.541 | 1e-155 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.967 | 0.764 | 0.402 | 1e-106 | |
| O49399 | 545 | Pentatricopeptide repeat- | no | no | 0.951 | 0.855 | 0.379 | 1e-100 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.969 | 0.735 | 0.375 | 2e-96 | |
| Q9LXF2 | 548 | Pentatricopeptide repeat- | no | no | 0.953 | 0.852 | 0.352 | 2e-92 | |
| Q9FMA1 | 530 | Pentatricopeptide repeat- | no | no | 0.873 | 0.807 | 0.381 | 8e-92 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.961 | 0.882 | 0.356 | 2e-91 | |
| Q9LS72 | 600 | Pentatricopeptide repeat- | no | no | 0.957 | 0.781 | 0.322 | 6e-89 | |
| Q9FFG8 | 657 | Pentatricopeptide repeat- | no | no | 0.938 | 0.700 | 0.364 | 6e-89 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.940 | 0.676 | 0.350 | 4e-88 |
| >sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800 OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 548 bits (1411), Expect = e-155, Method: Compositional matrix adjust.
Identities = 266/491 (54%), Positives = 354/491 (72%), Gaps = 13/491 (2%)
Query: 6 FIKRCKTIKQIHQIHAHFLTKGLLF--LSPCHILTTILYAITTFKPISSASSPTTDPLSY 63
+K C+T+K +HQ HA F+T G + + +L+AIT+ P +SAS + +SY
Sbjct: 10 LLKLCRTLKHLHQFHAQFITSGRISNDFKQNSVFANVLFAITSISPSASASK---EVVSY 66
Query: 64 ALSIFNNIPYPSTFSYNTIIRAHTLFS-SPLNAVVLFSQMRTVSIPPDFYSFPFLLRACS 122
A S+F I PSTF +NTIIR TL S L++ F +MR S+PPDF++FPF+ +AC+
Sbjct: 67 ATSVFRFITNPSTFCFNTIIRICTLHEPSSLSSKRFFVEMRRRSVPPDFHTFPFVFKACA 126
Query: 123 QLCSH--SLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSC 180
+ +L +T+H Q L+ G + D+F LN+L+ VY + + A +LFDE RDVV+
Sbjct: 127 AKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTY 186
Query: 181 NTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIK 240
N LIDG VKA ++ AR+LFD MP RD VSW +L++GYAQ + C EAI+LF M+ L +K
Sbjct: 187 NVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLK 246
Query: 241 PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEI 300
PDN+A+VS LSACA+ G+ ++GK IH Y + ++ +DSFL+TGLVDFYAKCG+I+TA+EI
Sbjct: 247 PDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEI 306
Query: 301 FESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLV 360
FE +K LFTWNAM+ GLAMHG G L++ YF +M+ + IKPDGVT + LVGCSH+GLV
Sbjct: 307 FELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLV 366
Query: 361 DEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG----DVFVWS 416
DEAR LFD+M S+Y V++E+KHYGCMADLLGRAGLIEEA EMI++MP G + WS
Sbjct: 367 DEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWS 426
Query: 417 GLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG- 475
GLLGGCRIHGN+EIAE AA V L PEDGGVYKV+ ++YANA+RWE+VVK+R +D
Sbjct: 427 GLLGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIDRDK 486
Query: 476 KIKKNAGCSLI 486
K+KKN G S +
Sbjct: 487 KVKKNVGFSKV 497
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 385 bits (990), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/484 (40%), Positives = 293/484 (60%), Gaps = 10/484 (2%)
Query: 7 IKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALS 66
++RC +++ QIHA L GL+ S YAIT F SS ++D L YA
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDS---------YAITKFLSFC-ISSTSSDFLPYAQI 70
Query: 67 IFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCS 126
+F+ P TF +N +IR + P +++L+ +M S P + Y+FP LL+ACS L +
Sbjct: 71 VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA 130
Query: 127 HSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDG 186
IH+Q+ KLG+ DV+ +NSL++ Y V + A LFD I D VS N++I G
Sbjct: 131 FEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKG 190
Query: 187 YVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIAL 246
YVKAG + A LF +M ++A+SW T+++GY Q+D +EA+QLF M + D++PDN++L
Sbjct: 191 YVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSL 250
Query: 247 VSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE 306
+ALSACA+LG LEQGK IH Y+ +IR+DS L L+D YAKCG + A+E+F++ ++
Sbjct: 251 ANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKK 310
Query: 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKL 366
K++ W A++ G A HG GR ++ F M + IKP+ +T L CS+ GLV+E + +
Sbjct: 311 KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLI 370
Query: 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHG 426
F ME Y + ++HYGC+ DLLGRAGL++EA I++MP+ + +W LL CRIH
Sbjct: 371 FYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHK 430
Query: 427 NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCSLI 486
N+E+ E E ++ + P GG Y A+++A +W+ + RR + + K GCS I
Sbjct: 431 NIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTI 490
Query: 487 QLNG 490
L G
Sbjct: 491 SLEG 494
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/508 (37%), Positives = 294/508 (57%), Gaps = 42/508 (8%)
Query: 5 NFIKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYA 64
+F +R K++ +I Q HA L GL F + +A A++P +SYA
Sbjct: 44 SFTERAKSLTEIQQAHAFMLKTGL-FHDTFSASKLVAFA---------ATNPEPKTVSYA 93
Query: 65 LSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQL 124
SI N I P+ F++N++IRA+ S+P A+ +F +M + PD YSF F+L+AC+
Sbjct: 94 HSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAF 153
Query: 125 CSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYC----------VFHRL--RDA------- 165
C + IH +K G + DVFV N+L++VY V R+ RDA
Sbjct: 154 CGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLL 213
Query: 166 ------------QELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGT 213
+ LFDE+ R+V S N +I GY AG + A+++FD MP RD VSW
Sbjct: 214 SAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNA 273
Query: 214 LVAGYAQSDQCEEAIQLFCNMMDLDI-KPDNIALVSALSACARLGELEQGKNIHRYIELN 272
+V YA E +++F M+D KPD LVS LSACA LG L QG+ +H YI+ +
Sbjct: 274 MVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKH 333
Query: 273 QIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYF 332
I ++ FL+T LVD Y+KCG I+ A+E+F ++ ++++ TWN+++ L++HGLG+ +L F
Sbjct: 334 GIEIEGFLATALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIF 393
Query: 333 SRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR 392
S M+ KP+G+T +G L C+H G++D+ARKLF+ M SVY V ++HYGCM DLLGR
Sbjct: 394 SEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGR 453
Query: 393 AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVL 452
G IEEA E++ ++P + LLG C+ G +E AE A +++L D Y +
Sbjct: 454 MGKIEEAEELVNEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQM 513
Query: 453 ADVYANADRWEDVVKIRRSLDAGKIKKN 480
+++YA+ RWE V+ RR++ A ++ ++
Sbjct: 514 SNLYASDGRWEKVIDGRRNMRAERVNRS 541
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 188/501 (37%), Positives = 292/501 (58%), Gaps = 26/501 (5%)
Query: 7 IKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALS 66
I C+TI+ + QIHA F+ G + L A + +++ D L YA
Sbjct: 30 INNCRTIRDLSQIHAVFIKSGQM--------RDTLAAAEILRFCATSDLHHRD-LDYAHK 80
Query: 67 IFNNIPYPSTFSYNTIIR--AHTLFSSPLNAVVLFSQMRTVS-IPPDFYSFPFLLRACSQ 123
IFN +P + FS+NTIIR + + L A+ LF +M + + P+ ++FP +L+AC++
Sbjct: 81 IFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAK 140
Query: 124 LCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELF-DEILYRD------ 176
+ IH LK GF D FV+++L+ +Y + ++DA+ LF I+ +D
Sbjct: 141 TGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTD 200
Query: 177 -------VVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQ 229
+V N +IDGY++ GD AR LFD+M R VSW T+++GY+ + ++A++
Sbjct: 201 RRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVE 260
Query: 230 LFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYA 289
+F M DI+P+ + LVS L A +RLG LE G+ +H Y E + IR+D L + L+D Y+
Sbjct: 261 VFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYS 320
Query: 290 KCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILG 349
KCG I AI +FE +N+ TW+AM+ G A+HG ++ F +M +A ++P V +
Sbjct: 321 KCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYIN 380
Query: 350 ALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG 409
L CSH GLV+E R+ F +M SV G+ ++HYGCM DLLGR+GL++EA E I MP+
Sbjct: 381 LLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIK 440
Query: 410 GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469
D +W LLG CR+ GNVE+ + A +M + P D G Y L+++YA+ W +V ++R
Sbjct: 441 PDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMR 500
Query: 470 RSLDAGKIKKNAGCSLIQLNG 490
+ I+K+ GCSLI ++G
Sbjct: 501 LRMKEKDIRKDPGCSLIDIDG 521
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 339 bits (870), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 182/517 (35%), Positives = 286/517 (55%), Gaps = 50/517 (9%)
Query: 8 KRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSI 67
+ CK I+ + QIHA + GL+ S ++ ++Y SAS L YA +
Sbjct: 20 QNCKNIRTLKQIHASMVVNGLM--SNLSVVGELIY---------SASLSVPGALKYAHKL 68
Query: 68 FNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSH 127
F+ IP P N ++R P V L+++M + PD Y+F F+L+ACS+L
Sbjct: 69 FDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWR 128
Query: 128 SLAQTIHSQVLKLGFICDVFVLNSLM--HVYC--------VFH----------------- 160
S H +V++ GF+ + +V N+L+ H C +F
Sbjct: 129 SNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGY 188
Query: 161 ----RLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVA 216
++ +A LFDE+ Y+D V+ N +I G +K ++ AR+LFDR +D V+W +++
Sbjct: 189 AKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMIS 248
Query: 217 GYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRV 276
GY +EA+ +F M D PD + ++S LSACA LG+LE GK +H YI L V
Sbjct: 249 GYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYI-LETASV 307
Query: 277 DSFLSTG------LVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLV 330
S + G L+D YAKCG I+ AIE+F ++++L TWN ++VGLA+H S+
Sbjct: 308 SSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHH-AEGSIE 366
Query: 331 YFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390
F M ++ P+ VT +G ++ CSH+G VDE RK F M +Y + +KHYGCM D+L
Sbjct: 367 MFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDML 426
Query: 391 GRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYK 450
GRAG +EEA ++ M + + VW LLG C+I+GNVE+ + A E ++ ++ ++ G Y
Sbjct: 427 GRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYV 486
Query: 451 VLADVYANADRWEDVVKIRRSLDAGKIKKNAGCSLIQ 487
+L+++YA+ +W+ V K+R+ D ++KK G SLI+
Sbjct: 487 LLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIE 523
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 337 bits (865), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 165/433 (38%), Positives = 264/433 (60%), Gaps = 5/433 (1%)
Query: 61 LSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLN---AVVLFSQMRTVSIPPDFYSFPFL 117
L YA S+F + P P+T+ +NT+IRA +L P A+ ++ ++ + PD ++FPF+
Sbjct: 63 LRYAYSVFTHQPCPNTYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFV 122
Query: 118 LRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDV 177
L+ ++ + IH QV+ GF V V+ L+ +Y L DA+++FDE+L +DV
Sbjct: 123 LKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDV 182
Query: 178 VSCNTLIDGYVKAGDLAHARQLFDRMP--FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMM 235
N L+ GY K G++ AR L + MP R+ VSW +++GYA+S + EAI++F M+
Sbjct: 183 NVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRML 242
Query: 236 DLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYIN 295
+++PD + L++ LSACA LG LE G+ I Y++ + L+ ++D YAK G I
Sbjct: 243 MENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNIT 302
Query: 296 TAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS 355
A+++FE E+N+ TW ++ GLA HG G +L F+RM++A ++P+ VT + L CS
Sbjct: 303 KALDVFECVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACS 362
Query: 356 HAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVW 415
H G VD ++LF+ M S YG+ ++HYGCM DLLGRAG + EA E+IK MP + +W
Sbjct: 363 HVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIW 422
Query: 416 SGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475
LL +H ++E+ E A ++KL+P + G Y +LA++Y+N RW++ +R +
Sbjct: 423 GSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGI 482
Query: 476 KIKKNAGCSLIQL 488
+KK AG S I++
Sbjct: 483 GVKKMAGESSIEV 495
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 173/485 (35%), Positives = 278/485 (57%), Gaps = 14/485 (2%)
Query: 6 FIKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYAL 65
F++R K+ + +I+A + GL S + T + + + YA
Sbjct: 16 FLQRVKSRNEWKKINASIIIHGL---SQSSFMVTKMVDFCD----------KIEDMDYAT 62
Query: 66 SIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIP-PDFYSFPFLLRACSQL 124
+FN + P+ F YN+IIRA+T S + + ++ Q+ S PD ++FPF+ ++C+ L
Sbjct: 63 RLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASL 122
Query: 125 CSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLI 184
S L + +H + K G V N+L+ +Y F L DA ++FDE+ RDV+S N+L+
Sbjct: 123 GSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLL 182
Query: 185 DGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNI 244
GY + G + A+ LF M + VSW +++GY EA+ F M I+PD I
Sbjct: 183 SGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEI 242
Query: 245 ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESS 304
+L+S L +CA+LG LE GK IH Y E + + L++ Y+KCG I+ AI++F
Sbjct: 243 SLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQM 302
Query: 305 QEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364
+ K++ +W+ M+ G A HG ++ F+ M A++KP+G+T LG L CSH G+ E
Sbjct: 303 EGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGL 362
Query: 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI 424
+ FD M Y + +++HYGC+ D+L RAG +E A+E+ K MPM D +W LL CR
Sbjct: 363 RYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRT 422
Query: 425 HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCS 484
GN+++A A +H+++L+PED G Y +LA++YA+ +WEDV ++R+ + +KK G S
Sbjct: 423 PGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGS 482
Query: 485 LIQLN 489
LI++N
Sbjct: 483 LIEVN 487
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (841), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 177/548 (32%), Positives = 293/548 (53%), Gaps = 79/548 (14%)
Query: 7 IKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALS 66
+ +C + Q+ Q+HA + + L HI ++ A++ + + A+
Sbjct: 26 LPKCANLNQVKQLHAQIIRRNLH--EDLHIAPKLISALSLCRQTN-----------LAVR 72
Query: 67 IFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCS 126
+FN + P+ N++IRAH S P A +FS+M+ + D +++PFLL+ACS
Sbjct: 73 VFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSW 132
Query: 127 HSLAQTIHSQVLKLGFICDVFVLNSLMHVYC------------VFHR------------- 161
+ + +H+ + KLG D++V N+L+ Y +F +
Sbjct: 133 LPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSML 192
Query: 162 --------LRDAQELFDEILYRDVVSCNTLIDGYV------------------------- 188
LRDA+ LFDE+ RD++S NT++DGY
Sbjct: 193 GGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWST 252
Query: 189 ------KAGDLAHARQLFDRMPF--RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIK 240
KAGD+ AR +FD+MP ++ V+W ++AGYA+ +EA +L M+ +K
Sbjct: 253 MVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLK 312
Query: 241 PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEI 300
D A++S L+AC G L G IH ++ + + ++++ L+D YAKCG + A ++
Sbjct: 313 FDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDV 372
Query: 301 FESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLV 360
F +K+L +WN ML GL +HG G+ ++ FSRM I+PD VT + L C+HAGL+
Sbjct: 373 FNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLI 432
Query: 361 DEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLG 420
DE F ME VY + +++HYGC+ DLLGR G ++EA+++++ MPM +V +W LLG
Sbjct: 433 DEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLG 492
Query: 421 GCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKN 480
CR+H V+IA+ ++++KL P D G Y +L+++YA A+ WE V IR + + ++K
Sbjct: 493 ACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKP 552
Query: 481 AGCSLIQL 488
+G S ++L
Sbjct: 553 SGASSVEL 560
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (841), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 177/486 (36%), Positives = 278/486 (57%), Gaps = 26/486 (5%)
Query: 10 CKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFN 69
C + QI QIH H L KGL C+ILT ++ +T DP YA +
Sbjct: 59 CINLNQIKQIHGHVLRKGLD--QSCYILTKLIRTLTKL-------GVPMDP--YARRVIE 107
Query: 70 NIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSL 129
+ + + F + +IR + + A+ ++ MR I P ++F LL+AC + +L
Sbjct: 108 PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNL 167
Query: 130 AQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVK 189
+ H+Q +L C V+V N+++ +Y + A+++FDE+ RDV+S LI Y +
Sbjct: 168 GRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYAR 227
Query: 190 AGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSA 249
G++ A +LF+ +P +D V+W +V G+AQ+ + +EA++ F M I+ D + +
Sbjct: 228 VGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGY 287
Query: 250 LSACARLGELEQGKNIHRYIELNQIRVDS-----FLSTGLVDFYAKCGYINTAIEIFESS 304
+SACA+LG K R +++ Q S + + L+D Y+KCG + A+ +F S
Sbjct: 288 ISACAQLG---ASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSM 344
Query: 305 QEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMI-EARIKPDGVTILGALVGCSHAGLVDEA 363
KN+FT+++M++GLA HG + +L F M+ + IKP+ VT +GAL+ CSH+GLVD+
Sbjct: 345 NNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQG 404
Query: 364 RKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM---PMGGDVFVWSGLLG 420
R++FD M +GV HY CM DLLGR G ++EALE+IK M P GG VW LLG
Sbjct: 405 RQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGG---VWGALLG 461
Query: 421 GCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKN 480
CRIH N EIAE AAEH+ +L+P+ G Y +L++VYA+A W V+++R+ + +KK
Sbjct: 462 ACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKT 521
Query: 481 AGCSLI 486
S +
Sbjct: 522 PAVSWV 527
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (834), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 166/474 (35%), Positives = 265/474 (55%), Gaps = 13/474 (2%)
Query: 17 HQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPST 76
H I H L L +S H + ++A + + A +F+ P
Sbjct: 176 HMILGHVLKLRLELVSHVHNASIHMFA-------------SCGDMENARKVFDESPVRDL 222
Query: 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQ 136
S+N +I + A+ ++ M + + PD + L+ +CS L + + +
Sbjct: 223 VSWNCLINGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEY 282
Query: 137 VLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHA 196
V + G + ++N+LM ++ + +A+ +FD + R +VS T+I GY + G L +
Sbjct: 283 VKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVS 342
Query: 197 RQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARL 256
R+LFD M +D V W ++ G Q+ + ++A+ LF M + KPD I ++ LSAC++L
Sbjct: 343 RKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQL 402
Query: 257 GELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAML 316
G L+ G IHRYIE + ++ L T LVD YAKCG I+ A+ +F Q +N T+ A++
Sbjct: 403 GALDVGIWIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAII 462
Query: 317 VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGV 376
GLA+HG ++ YF+ MI+A I PD +T +G L C H G++ R F +M+S + +
Sbjct: 463 GGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNL 522
Query: 377 SKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAE 436
+ +LKHY M DLLGRAGL+EEA +++ MPM D VW LL GCR+HGNVE+ E AA+
Sbjct: 523 NPQLKHYSIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAK 582
Query: 437 HVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCSLIQLNG 490
+++L P D G+Y +L +Y A+ WED + RR ++ ++K GCS I++NG
Sbjct: 583 KLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNG 636
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 490 | ||||||
| 359491588 | 576 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.985 | 0.838 | 0.657 | 0.0 | |
| 255540011 | 551 | pentatricopeptide repeat-containing prot | 0.989 | 0.880 | 0.647 | 0.0 | |
| 224119882 | 537 | predicted protein [Populus trichocarpa] | 0.983 | 0.897 | 0.647 | 0.0 | |
| 356527575 | 577 | PREDICTED: pentatricopeptide repeat-cont | 0.981 | 0.833 | 0.607 | 1e-169 | |
| 15240355 | 499 | pentatricopeptide repeat-containing prot | 0.975 | 0.957 | 0.541 | 1e-153 | |
| 297797141 | 1401 | hypothetical protein ARALYDRAFT_496347 [ | 0.955 | 0.334 | 0.543 | 1e-151 | |
| 147832325 | 622 | hypothetical protein VITISV_030261 [Viti | 0.969 | 0.763 | 0.401 | 1e-112 | |
| 225425100 | 622 | PREDICTED: pentatricopeptide repeat-cont | 0.969 | 0.763 | 0.401 | 1e-112 | |
| 297740547 | 506 | unnamed protein product [Vitis vinifera] | 0.969 | 0.938 | 0.405 | 1e-110 | |
| 357167426 | 357 | PREDICTED: pentatricopeptide repeat-cont | 0.673 | 0.924 | 0.558 | 1e-108 |
| >gi|359491588|ref|XP_002281032.2| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g61800 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/487 (65%), Positives = 385/487 (79%), Gaps = 4/487 (0%)
Query: 7 IKRCKTIKQIHQIHAHFLTKGLLF--LSPCHILTTILYAITTFKPISSASSPTTDPLS-Y 63
I++CK++KQ+HQ+HAH +T GLL+ +LT IL A T P ++AS T L+ Y
Sbjct: 22 IRQCKSLKQLHQVHAHTITTGLLWGLHHSSLLLTNILTAFTALLPTTNASPTTPAALTGY 81
Query: 64 ALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQ 123
ALS+FN IP PSTF YNT+IRAHTL SSPL A+V+F +MR +S+PPD ++FPF L+ACS
Sbjct: 82 ALSVFNRIPNPSTFGYNTMIRAHTLLSSPLAALVIFVRMRRLSVPPDTHTFPFCLKACSL 141
Query: 124 LCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTL 183
L + SLAQT+HSQ K GF D+FV N+L+HVY V L A ++F+E +DVVS N L
Sbjct: 142 LPALSLAQTLHSQAFKFGFGADLFVCNTLIHVYSVNKHLHHACQVFNETSLKDVVSYNAL 201
Query: 184 IDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQS-DQCEEAIQLFCNMMDLDIKPD 242
I G++K GD AR+LFD+MP RDAVSWGTL+AGYAQS D C +AIQLF M+ ++PD
Sbjct: 202 IGGFIKVGDTDRARRLFDKMPIRDAVSWGTLLAGYAQSGDLCMDAIQLFNRMLISTVRPD 261
Query: 243 NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFE 302
NIALVSALSACA+LGELEQGK+IH YI+ N+I +++FLSTGLVD YAKCG I TA EIFE
Sbjct: 262 NIALVSALSACAQLGELEQGKSIHVYIKQNRIPINAFLSTGLVDLYAKCGCIETAREIFE 321
Query: 303 SSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDE 362
SS +KNLFTWNA+LVGL MHG G LSL YFSRMIEA IKPDGV+ LG LVGC HAGLV E
Sbjct: 322 SSPDKNLFTWNALLVGLGMHGRGHLSLHYFSRMIEAGIKPDGVSFLGILVGCGHAGLVCE 381
Query: 363 ARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGC 422
AR F EME VY V +ELKHYGCMADLLGRAGLI EA+EMI++MPMGGDVFVW G+LGGC
Sbjct: 382 ARNFFQEMEVVYRVPRELKHYGCMADLLGRAGLIREAMEMIERMPMGGDVFVWGGVLGGC 441
Query: 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAG 482
RIHGNVEIAE AAE+VM L PED GVY ++AD+YANA RWEDV +IRR + + ++KKN G
Sbjct: 442 RIHGNVEIAEKAAENVMALNPEDDGVYSIMADIYANAGRWEDVARIRRLMHSRQVKKNPG 501
Query: 483 CSLIQLN 489
CSL+QLN
Sbjct: 502 CSLVQLN 508
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/493 (64%), Positives = 389/493 (78%), Gaps = 8/493 (1%)
Query: 2 TLNNFIKRCKTIKQIHQIHAHFLTKGLLFLSPC---HILTTILYAITTFKPISSASSPTT 58
++ I++CKTI Q++Q+HA TKGLL L+ C ILT ILYA+TT S+ S
Sbjct: 29 SIYTLIRQCKTINQLYQVHAQAFTKGLLSLTACSSPQILTKILYALTTIPTPKSSFSL-- 86
Query: 59 DPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLL 118
L YA+S F+NI PSTF YN IIR HTL SS L+A+ F QMR S+PPDF+S+PF L
Sbjct: 87 --LHYAVSTFDNIQNPSTFCYNVIIRLHTLHSSALSALHFFLQMRRFSVPPDFHSYPFAL 144
Query: 119 RACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVV 178
+AC+ L SLAQ +HSQV K GF+ D++V+NSL+HVY +F L A ++FDE RDVV
Sbjct: 145 KACAHLRVLSLAQCLHSQVFKFGFVSDLYVINSLIHVYSLFDCLNYACQVFDESSDRDVV 204
Query: 179 SCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLD 238
S N L+DG+VKAG+ AR++FD MP RD+VSWG+L+AGYAQ C EAI LF MM L
Sbjct: 205 SYNALVDGFVKAGEFVKAREIFDLMPMRDSVSWGSLIAGYAQGSYCNEAIGLFDLMMGLK 264
Query: 239 IKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAI 298
++PDNIALVSALSACA+LGELE+GK IH YI+ N+I+ DSFLSTGLVDFYAK G I+TAI
Sbjct: 265 LEPDNIALVSALSACAQLGELEKGKQIHDYIKKNRIQADSFLSTGLVDFYAKSGCIDTAI 324
Query: 299 EIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAG 358
++FE S +K+L TWNAML+G+AMHG L L YFSRM+EA IKPDG++ LG LVGCSH G
Sbjct: 325 KVFELSPDKSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGIKPDGISFLGVLVGCSHGG 384
Query: 359 LVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGL 418
LVDEA+KLFDEMES+YGV +ELKHYGCMADLL RAGLI+EA+E+ K +PMGGD+FVWSGL
Sbjct: 385 LVDEAKKLFDEMESIYGVRRELKHYGCMADLLARAGLIKEAVELTKGLPMGGDIFVWSGL 444
Query: 419 LGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK-I 477
LGGCRIHGN+EIAE AA+ VM+LKPEDGGVY +LA+VYANADRWEDVVKIRRS+ + + +
Sbjct: 445 LGGCRIHGNIEIAEQAAKQVMELKPEDGGVYSILANVYANADRWEDVVKIRRSMSSNRAV 504
Query: 478 KKNAGCSLIQLNG 490
KKNAG S IQL G
Sbjct: 505 KKNAGRSSIQLGG 517
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa] gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/488 (64%), Positives = 387/488 (79%), Gaps = 6/488 (1%)
Query: 5 NFIKRCKTIKQIHQIHAHFLTKG-LLFLSPCHILTTILYAITTFKPISSASSPTTDPLSY 63
IK+CKTI Q+HQ+HA+ +T L F S +LT LY +TT + S +T L Y
Sbjct: 21 KLIKQCKTISQLHQLHAYTITNTPLSFHSSPSLLTKFLYTLTT----KAKSKSSTSLLHY 76
Query: 64 ALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQ 123
A SIFN+I PSTF YNTIIR HTL S P+ A+ F+QMR +S+P D +SFPF L+AC+Q
Sbjct: 77 AKSIFNSIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKACAQ 136
Query: 124 LCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTL 183
L A+ +H QVLK GF+ D++V+NSL+H Y V DA ++FDE RDVVS N L
Sbjct: 137 LGGVFSARCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKVFDESPQRDVVSYNVL 196
Query: 184 IDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDN 243
IDG+VKAGD+ AR+LFD MP RD+VSW T++AG A+ D CEEAI+LF MMDL+I+PDN
Sbjct: 197 IDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDN 256
Query: 244 IALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFES 303
+ALVS LSACA+LGELE+GK IH YIE N ++VD+FLSTGLVDFYAKCG ++ A++IF+S
Sbjct: 257 VALVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLSTGLVDFYAKCGCVDIALKIFDS 316
Query: 304 SQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEA 363
S +KNLFTWNAMLVGLAMHG G L L YFSRMIEA +KPDG++ILG LVGCSH+GLVDEA
Sbjct: 317 SSDKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDGISILGVLVGCSHSGLVDEA 376
Query: 364 RKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCR 423
RKLFDEMESVYGV +E KHYGCMADLLGRAGLI++ +EMIK MP GGD+ VWSGLLGGCR
Sbjct: 377 RKLFDEMESVYGVPREPKHYGCMADLLGRAGLIKKVMEMIKDMPRGGDMSVWSGLLGGCR 436
Query: 424 IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK-IKKNAG 482
IHG+VEIAE AA+H+M+LKP+DGGVY +LA+VYANA+RWEDV+ IRRSL + + + K AG
Sbjct: 437 IHGDVEIAEKAAKHLMELKPDDGGVYSILANVYANAERWEDVMNIRRSLSSNRVVTKIAG 496
Query: 483 CSLIQLNG 490
SLIQL+G
Sbjct: 497 FSLIQLDG 504
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61800-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 294/484 (60%), Positives = 375/484 (77%), Gaps = 3/484 (0%)
Query: 7 IKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALS 66
IK+CK+I Q+HQ+HAH +T GLL L IL IL +++ SS S+ YALS
Sbjct: 7 IKQCKSISQLHQVHAHSITTGLLPLHTFPILNNILSTLSSLLTTSSNSNSIIT--FYALS 64
Query: 67 IFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCS 126
+F++IP PSTFS+NT+IR HTL SPL A+ LFS +R +S+PPDF++FPF+L+A +QL S
Sbjct: 65 LFHSIPNPSTFSFNTLIRIHTLLLSPLPALHLFSTLRRLSLPPDFHTFPFVLKASAQLHS 124
Query: 127 HSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDG 186
SLAQ++HSQ LK G + D+F LN+L+ VY + HR+ DA +LF E + DVVS N LI G
Sbjct: 125 LSLAQSLHSQALKFGLLPDLFSLNTLIGVYSIHHRVNDAHKLFYECPHGDVVSYNALIHG 184
Query: 187 YVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIAL 246
VK ++ AR+LFD MP RD +SWGT++AGY+ C +AI+LF MM L++KPDNIAL
Sbjct: 185 LVKTRQISRARELFDEMPVRDEISWGTMIAGYSHLKLCNQAIELFNEMMRLEVKPDNIAL 244
Query: 247 VSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE 306
VS LSACA+LGELEQG +H YI+ N+IRVDS+L+TGLVD YAKCG + TA ++FES E
Sbjct: 245 VSVLSACAQLGELEQGSIVHDYIKRNRIRVDSYLATGLVDLYAKCGCVETARDVFESCME 304
Query: 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKL 366
K +FTWNAMLVG A+HG G + L YFSRM+ +KPDGVT+LG LVGCSHAGLV EAR++
Sbjct: 305 KYVFTWNAMLVGFAIHGEGSMVLEYFSRMVSEGVKPDGVTLLGVLVGCSHAGLVLEARRI 364
Query: 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHG 426
FDEME+VYGV +E KHYGCMAD+L RAGLIEE +EM+K MP GGDVF W GLLGGCRIHG
Sbjct: 365 FDEMENVYGVKREGKHYGCMADMLARAGLIEEGVEMVKAMPSGGDVFAWGGLLGGCRIHG 424
Query: 427 NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK-IKKNAGCSL 485
NVE+A+ AA+ VM++KPEDGGVY V+A++YA+ ++W+D+VK+RRSL A K KK G SL
Sbjct: 425 NVEVAKKAAQQVMEIKPEDGGVYSVMANIYAHTEQWDDLVKVRRSLSANKRAKKITGRSL 484
Query: 486 IQLN 489
I+LN
Sbjct: 485 IRLN 488
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240355|ref|NP_200988.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75171532|sp|Q9FLS9.1|PP441_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61800 gi|10176873|dbj|BAB10080.1| unnamed protein product [Arabidopsis thaliana] gi|332010136|gb|AED97519.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 266/491 (54%), Positives = 354/491 (72%), Gaps = 13/491 (2%)
Query: 6 FIKRCKTIKQIHQIHAHFLTKGLLF--LSPCHILTTILYAITTFKPISSASSPTTDPLSY 63
+K C+T+K +HQ HA F+T G + + +L+AIT+ P +SAS + +SY
Sbjct: 10 LLKLCRTLKHLHQFHAQFITSGRISNDFKQNSVFANVLFAITSISPSASASK---EVVSY 66
Query: 64 ALSIFNNIPYPSTFSYNTIIRAHTLFS-SPLNAVVLFSQMRTVSIPPDFYSFPFLLRACS 122
A S+F I PSTF +NTIIR TL S L++ F +MR S+PPDF++FPF+ +AC+
Sbjct: 67 ATSVFRFITNPSTFCFNTIIRICTLHEPSSLSSKRFFVEMRRRSVPPDFHTFPFVFKACA 126
Query: 123 QLCSH--SLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSC 180
+ +L +T+H Q L+ G + D+F LN+L+ VY + + A +LFDE RDVV+
Sbjct: 127 AKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTY 186
Query: 181 NTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIK 240
N LIDG VKA ++ AR+LFD MP RD VSW +L++GYAQ + C EAI+LF M+ L +K
Sbjct: 187 NVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLK 246
Query: 241 PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEI 300
PDN+A+VS LSACA+ G+ ++GK IH Y + ++ +DSFL+TGLVDFYAKCG+I+TA+EI
Sbjct: 247 PDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEI 306
Query: 301 FESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLV 360
FE +K LFTWNAM+ GLAMHG G L++ YF +M+ + IKPDGVT + LVGCSH+GLV
Sbjct: 307 FELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLV 366
Query: 361 DEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG----DVFVWS 416
DEAR LFD+M S+Y V++E+KHYGCMADLLGRAGLIEEA EMI++MP G + WS
Sbjct: 367 DEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWS 426
Query: 417 GLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG- 475
GLLGGCRIHGN+EIAE AA V L PEDGGVYKV+ ++YANA+RWE+VVK+R +D
Sbjct: 427 GLLGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIDRDK 486
Query: 476 KIKKNAGCSLI 486
K+KKN G S +
Sbjct: 487 KVKKNVGFSKV 497
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp. lyrata] gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 261/480 (54%), Positives = 348/480 (72%), Gaps = 12/480 (2%)
Query: 6 FIKRCKTIKQIHQIHAHFLTKGLLF--LSPCHILTTILYAITTFKPISSASSPTTDPLSY 63
+K C+T+K +HQ HA F+T G + L+ + +L+AIT+ P +S S+ +SY
Sbjct: 424 LLKLCRTLKHLHQFHAQFITSGRISSSLNQNSVFANVLFAITSISPSASTSNVV---VSY 480
Query: 64 ALSIFNNIPYPSTFSYNTIIRAHTLFSS-PLNAVVLFSQMRTVSIPPDFYSFPFLLRACS 122
A S+ I PSTF +NTIIR +TL L++ F +MR S+PPDF+++PF+ +AC+
Sbjct: 481 ATSVLRFITNPSTFCFNTIIRIYTLHEPLSLSSQRFFVEMRRRSVPPDFHTYPFVFKACA 540
Query: 123 QLCSH--SLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSC 180
+ SL +T+H Q L+ G + D+F LN+L+ Y + + A +LFDE RDVV+
Sbjct: 541 AKKNGDLSLVKTLHCQALRFGLLSDLFTLNTLIRAYSLMAPIGSALQLFDENPQRDVVTY 600
Query: 181 NTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIK 240
N LIDG VKA ++ AR+LFD MPFRD VSW +L+AGYAQ +QC EAI LF M+ L +K
Sbjct: 601 NVLIDGLVKACEIVRARELFDSMPFRDLVSWNSLIAGYAQMNQCREAISLFDEMIGLGLK 660
Query: 241 PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEI 300
PDN+A+VS LSACA+ G+LE+GK IH Y + ++ +DSFL+TGLVDFYAKCG+I+TA+EI
Sbjct: 661 PDNVAIVSTLSACAQSGDLEKGKAIHDYTKKKRLFIDSFLATGLVDFYAKCGFIDTAMEI 720
Query: 301 FESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLV 360
F S +K LFTWNAM+ GLAMHG G L++ YF +M+ + IKPDGV+ + LVGCSH+GLV
Sbjct: 721 FHLSSDKTLFTWNAMITGLAMHGNGELTVDYFHKMVSSGIKPDGVSFISVLVGCSHSGLV 780
Query: 361 DEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG----DVFVWS 416
EARKLFD+M S+Y V +E+KHYGCMADLLGRAGLIEEA EMI++MP G + WS
Sbjct: 781 GEARKLFDQMRSLYDVDREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGKREKLLAWS 840
Query: 417 GLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476
GLLGGCRIHGN+E+AE AA+ V L PEDGGVYKV+ ++YANA+RWEDVVK+R ++ K
Sbjct: 841 GLLGGCRIHGNIEVAEKAAKRVKALSPEDGGVYKVMVEMYANAERWEDVVKVREMIERDK 900
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/486 (40%), Positives = 304/486 (62%), Gaps = 11/486 (2%)
Query: 5 NFIKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYA 64
+ ++RC ++++ QIH L GL IL I K ++ +SP + L+YA
Sbjct: 23 HLLQRCSNMEELRQIHGQMLKTGL-----------ILDEIPASKLLAFCASPNSGSLAYA 71
Query: 65 LSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQL 124
++F+ I P+TF +NT+IR ++ P A++L+ M S+P + Y+FPFLL+ACS +
Sbjct: 72 RTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSM 131
Query: 125 CSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLI 184
+ Q IH+ ++K+GF +++ NSL++VY ++ A+ LFD++ RD VS N++I
Sbjct: 132 SASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMI 191
Query: 185 DGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNI 244
DGY K G++ A ++F+ MP R+ +SW ++++G + + +EA+ LF M IK DN+
Sbjct: 192 DGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNV 251
Query: 245 ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESS 304
ALVS L ACA LG L+QGK IH YI+ ++I +D L L+D YAKCG + AIE+F
Sbjct: 252 ALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKM 311
Query: 305 QEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364
+EK + W AM+ G A+HG GR +L +F +M A ++P+ +T G L CSHAGLV EA+
Sbjct: 312 EEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAK 371
Query: 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI 424
LF+ ME ++G ++HYGCM DLLGRAGL++EA E+I+ MP+ + +W LL C I
Sbjct: 372 LLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHI 431
Query: 425 HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCS 484
HGN+E+ + + ++++ P GG Y LA ++A A W ++RR + + K GCS
Sbjct: 432 HGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCS 491
Query: 485 LIQLNG 490
+I +NG
Sbjct: 492 VISVNG 497
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/486 (40%), Positives = 304/486 (62%), Gaps = 11/486 (2%)
Query: 5 NFIKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYA 64
+ ++RC ++++ QIH L GL IL I K ++ +SP + L+YA
Sbjct: 23 HLLQRCSNMEELRQIHGQMLKTGL-----------ILDEIPASKLLAFCASPNSGSLAYA 71
Query: 65 LSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQL 124
++F+ I P+TF +NT+IR ++ P A++L+ M S+P + Y+FPFLL+ACS +
Sbjct: 72 RTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSM 131
Query: 125 CSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLI 184
+ Q IH+ ++K+GF +++ NSL++VY ++ A+ LFD++ RD VS N++I
Sbjct: 132 SALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMI 191
Query: 185 DGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNI 244
DGY K G++ A ++F+ MP R+ +SW ++++G + + +EA+ LF M IK DN+
Sbjct: 192 DGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNV 251
Query: 245 ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESS 304
ALVS L ACA LG L+QGK IH YI+ ++I +D L L+D YAKCG + AIE+F
Sbjct: 252 ALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKM 311
Query: 305 QEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364
+EK + W AM+ G A+HG GR +L +F +M A ++P+ +T G L CSHAGLV EA+
Sbjct: 312 EEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAK 371
Query: 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI 424
LF+ ME ++G ++HYGCM DLLGRAGL++EA E+I+ MP+ + +W LL C I
Sbjct: 372 LLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHI 431
Query: 425 HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCS 484
HGN+E+ + + ++++ P GG Y LA ++A A W ++RR + + K GCS
Sbjct: 432 HGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCS 491
Query: 485 LIQLNG 490
+I +NG
Sbjct: 492 VISVNG 497
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/488 (40%), Positives = 303/488 (62%), Gaps = 13/488 (2%)
Query: 5 NFIKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYA 64
+F + +I ++HQ HAH L GL+ + A +S+ S P YA
Sbjct: 12 SFAEMATSISELHQAHAHILKSGLIH--------STFAASRLIASVSTNSHAQAIP--YA 61
Query: 65 LSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQL 124
SIF+ IP P+++ +NTIIRA+ +P A+ +F QM S+ PD Y+F F L++C
Sbjct: 62 HSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSF 121
Query: 125 CSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLI 184
+ IH VLK G D+F+ N+L+H+Y + DA+ L D +L RDVVS N L+
Sbjct: 122 SGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALL 181
Query: 185 DGYVKAG--DLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD 242
Y + G +LA +R++F P ++ VSW ++ GY+ + + E + LF +M +KPD
Sbjct: 182 SAYAERGLMELA-SRRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPD 240
Query: 243 NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFE 302
N LVS LSACA +G L QG+ +H YI+ N I +D F++T LVD Y+KCG I A+E+F
Sbjct: 241 NCTLVSVLSACAHVGALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFN 300
Query: 303 SSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDE 362
S K++ TWN+++ GL+ HG G+ +L FS M+ KP+ VT + L CS AGL+DE
Sbjct: 301 SCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDE 360
Query: 363 ARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGC 422
R++F+ M V+G+ ++HYGCM DLLGR GL+EEA E+++KMP VW LLG C
Sbjct: 361 GREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGAC 420
Query: 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAG 482
R HGNVE+AE A+ +++L P++ + L+++YA+ RW+DV+++R+ + A ++K+ G
Sbjct: 421 RNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPG 480
Query: 483 CSLIQLNG 490
CS+I+++G
Sbjct: 481 CSMIEVDG 488
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357167426|ref|XP_003581157.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61800-like, partial [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 191/342 (55%), Positives = 249/342 (72%)
Query: 148 VLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRD 207
V N+L+ +Y A +FDE+ DVVS N L+DGY+KAG L A + F RMP RD
Sbjct: 15 VGNALVSLYAKNALPDSACRVFDEMPAPDVVSYNALMDGYIKAGRLGLATKEFMRMPQRD 74
Query: 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHR 267
AVSWGT+VAG A++ + EEA+ LF M +PD+I L + LS CA+LG LE+G+ +H
Sbjct: 75 AVSWGTVVAGCAKAGRWEEAVLLFDRMRWEGFRPDDIVLAAVLSCCAQLGALEKGREVHE 134
Query: 268 YIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRL 327
Y+ ++ R + FL TGLVD YAKCG + A E+F++ E+N+FTWNA++VGLAMHG G +
Sbjct: 135 YVRQSRPRPNVFLCTGLVDLYAKCGCVEIAREVFDTCPERNVFTWNALIVGLAMHGHGTV 194
Query: 328 SLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMA 387
+L YF RM+ +PDGVT LG L+GCSHAGL+D A+++F EME YGVS+ELKHYGCMA
Sbjct: 195 TLKYFDRMLAEGFRPDGVTFLGVLIGCSHAGLIDMAKRIFFEMEMKYGVSRELKHYGCMA 254
Query: 388 DLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG 447
DLLGRAGLIEEA+EM+KKMPM GD +VW G+L GCR HGNVE AE AA H+++L PEDGG
Sbjct: 255 DLLGRAGLIEEAMEMVKKMPMEGDTYVWGGILAGCRKHGNVEEAEVAARHLLELNPEDGG 314
Query: 448 VYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCSLIQLN 489
VY V+ +YA+A RWEDV ++R+ +D +N GCS I +
Sbjct: 315 VYSVMTGIYADAGRWEDVARVRKLMDERVGARNVGCSSITTD 356
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 490 | ||||||
| TAIR|locus:2159238 | 499 | AT5G61800 "AT5G61800" [Arabido | 0.973 | 0.955 | 0.544 | 2.6e-141 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.967 | 0.764 | 0.402 | 5.9e-96 | |
| TAIR|locus:2161018 | 530 | AT5G56310 "AT5G56310" [Arabido | 0.953 | 0.881 | 0.368 | 1.3e-84 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.879 | 0.807 | 0.379 | 2.1e-84 | |
| TAIR|locus:2167593 | 657 | AT5G44230 [Arabidopsis thalian | 0.946 | 0.706 | 0.366 | 7.4e-82 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.930 | 0.669 | 0.355 | 9.4e-82 | |
| TAIR|locus:2159602 | 511 | AT5G08510 "AT5G08510" [Arabido | 0.865 | 0.829 | 0.375 | 8.5e-81 | |
| TAIR|locus:1009023396 | 612 | AT5G40405 "AT5G40405" [Arabido | 0.953 | 0.763 | 0.344 | 1.1e-80 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.975 | 0.768 | 0.347 | 1.1e-80 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.812 | 0.616 | 0.389 | 7.6e-80 |
| TAIR|locus:2159238 AT5G61800 "AT5G61800" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1382 (491.5 bits), Expect = 2.6e-141, P = 2.6e-141
Identities = 267/490 (54%), Positives = 356/490 (72%)
Query: 7 IKRCKTIKQIHQIHAHFLTKGLLF--LSPCHILTTILYAITTFKPISSASSPTTDPLSYA 64
+K C+T+K +HQ HA F+T G + + +L+AIT+ P +SAS + +SYA
Sbjct: 11 LKLCRTLKHLHQFHAQFITSGRISNDFKQNSVFANVLFAITSISPSASASK---EVVSYA 67
Query: 65 LSIFNNIPYPSTFSYNTIIRAHTLFS-SPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQ 123
S+F I PSTF +NTIIR TL S L++ F +MR S+PPDF++FPF+ +AC+
Sbjct: 68 TSVFRFITNPSTFCFNTIIRICTLHEPSSLSSKRFFVEMRRRSVPPDFHTFPFVFKACAA 127
Query: 124 LCSH--SLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCN 181
+ +L +T+H Q L+ G + D+F LN+L+ VY + + A +LFDE RDVV+ N
Sbjct: 128 KKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPIDSALQLFDENPQRDVVTYN 187
Query: 182 TLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKP 241
LIDG VKA ++ AR+LFD MP RD VSW +L++GYAQ + C EAI+LF M+ L +KP
Sbjct: 188 VLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMNHCREAIKLFDEMVALGLKP 247
Query: 242 DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIF 301
DN+A+VS LSACA+ G+ ++GK IH Y + ++ +DSFL+TGLVDFYAKCG+I+TA+EIF
Sbjct: 248 DNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSFLATGLVDFYAKCGFIDTAMEIF 307
Query: 302 ESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVD 361
E +K LFTWNAM+ GLAMHG G L++ YF +M+ + IKPDGVT + LVGCSH+GLVD
Sbjct: 308 ELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVD 367
Query: 362 EARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GGD---VFVWSG 417
EAR LFD+M S+Y V++E+KHYGCMADLLGRAGLIEEA EMI++MP GG+ + WSG
Sbjct: 368 EARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWSG 427
Query: 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK- 476
LLGGCRIHGN+EIAE AA V L PEDGGVYKV+ ++YANA+RWE+VVK+R +D K
Sbjct: 428 LLGGCRIHGNIEIAEKAANRVKALSPEDGGVYKVMVEMYANAERWEEVVKVREIIDRDKK 487
Query: 477 IKKNAGCSLI 486
+KKN G S +
Sbjct: 488 VKKNVGFSKV 497
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 195/484 (40%), Positives = 293/484 (60%)
Query: 7 IKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALS 66
++RC +++ QIHA L GL+ S YAIT F SS ++D L YA
Sbjct: 21 LQRCSKQEELKQIHARMLKTGLMQDS---------YAITKFLSFC-ISSTSSDFLPYAQI 70
Query: 67 IFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCS 126
+F+ P TF +N +IR + P +++L+ +M S P + Y+FP LL+ACS L +
Sbjct: 71 VFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA 130
Query: 127 HSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDG 186
IH+Q+ KLG+ DV+ +NSL++ Y V + A LFD I D VS N++I G
Sbjct: 131 FEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKG 190
Query: 187 YVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIAL 246
YVKAG + A LF +M ++A+SW T+++GY Q+D +EA+QLF M + D++PDN++L
Sbjct: 191 YVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSL 250
Query: 247 VSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE 306
+ALSACA+LG LEQGK IH Y+ +IR+DS L L+D YAKCG + A+E+F++ ++
Sbjct: 251 ANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKK 310
Query: 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKL 366
K++ W A++ G A HG GR ++ F M + IKP+ +T L CS+ GLV+E + +
Sbjct: 311 KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLI 370
Query: 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHG 426
F ME Y + ++HYGC+ DLLGRAGL++EA I++MP+ + +W LL CRIH
Sbjct: 371 FYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHK 430
Query: 427 NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCSLI 486
N+E+ E E ++ + P GG Y A+++A +W+ + RR + + K GCS I
Sbjct: 431 NIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTI 490
Query: 487 QLNG 490
L G
Sbjct: 491 SLEG 494
|
|
| TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 176/478 (36%), Positives = 283/478 (59%)
Query: 18 QIHAHFLTKGLLFLSPCHILTTILYA--ITTFKPISSASSPTTDPLSYALSIFNNIPYPS 75
+IH + L L S C+++ T L + K I + S+ L YA S+F + P P+
Sbjct: 22 KIHGNNLKT--LKQSHCYMIITGLNRDNLNVAKFIEACSN--AGHLRYAYSVFTHQPCPN 77
Query: 76 TFSYNTIIRAHTLFSSPLN---AVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQT 132
T+ +NT+IRA +L P A+ ++ ++ + PD ++FPF+L+ ++ +
Sbjct: 78 TYLHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQ 137
Query: 133 IHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGD 192
IH QV+ GF V V+ L+ +Y L DA+++FDE+L +DV N L+ GY K G+
Sbjct: 138 IHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGE 197
Query: 193 LAHARQLFDRMP--FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSAL 250
+ AR L + MP R+ VSW +++GYA+S + EAI++F M+ +++PD + L++ L
Sbjct: 198 MDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVL 257
Query: 251 SACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLF 310
SACA LG LE G+ I Y++ + L+ ++D YAK G I A+++FE E+N+
Sbjct: 258 SACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVV 317
Query: 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEM 370
TW ++ GLA HG G +L F+RM++A ++P+ VT + L CSH G VD ++LF+ M
Sbjct: 318 TWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSM 377
Query: 371 ESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEI 430
S YG+ ++HYGCM DLLGRAG + EA E+IK MP + +W LL +H ++E+
Sbjct: 378 RSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLEL 437
Query: 431 AEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCSLIQL 488
E A ++KL+P + G Y +LA++Y+N RW++ +R + +KK AG S I++
Sbjct: 438 GERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEV 495
|
|
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
Identities = 164/432 (37%), Positives = 260/432 (60%)
Query: 59 DPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIP-PDFYSFPFL 117
+ + YA +FN + P+ F YN+IIRA+T S + + ++ Q+ S PD ++FPF+
Sbjct: 56 EDMDYATRLFNQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFM 115
Query: 118 LRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDV 177
++C+ L S L + +H + K G V N+L+ +Y F L DA ++FDE+ RDV
Sbjct: 116 FKSCASLGSCYLGKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDV 175
Query: 178 VSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDL 237
+S N+L+ GY + G + A+ LF M + VSW +++GY EA+ F M
Sbjct: 176 ISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLA 235
Query: 238 DIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTA 297
I+PD I+L+S L +CA+LG LE GK IH Y E + + L++ Y+KCG I+ A
Sbjct: 236 GIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFLKQTGVCNALIEMYSKCGVISQA 295
Query: 298 IEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA 357
I++F + K++ +W+ M+ G A HG ++ F+ M A++KP+G+T LG L CSH
Sbjct: 296 IQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHV 355
Query: 358 GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSG 417
G+ E + FD M Y + +++HYGC+ D+L RAG +E A+E+ K MPM D +W
Sbjct: 356 GMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGS 415
Query: 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKI 477
LL CR GN+++A A +H+++L+PED G Y +LA++YA+ +WEDV ++R+ + +
Sbjct: 416 LLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENM 475
Query: 478 KKNAGCSLIQLN 489
KK G SLI++N
Sbjct: 476 KKTPGGSLIEVN 487
|
|
| TAIR|locus:2167593 AT5G44230 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
Identities = 180/491 (36%), Positives = 282/491 (57%)
Query: 10 CKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFN 69
C + QI QIH H L KGL C+ILT ++ +T P DP YA +
Sbjct: 59 CINLNQIKQIHGHVLRKGLD--QSCYILTKLIRTLTKL------GVPM-DP--YARRVIE 107
Query: 70 NIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSL 129
+ + + F + +IR + + A+ ++ MR I P ++F LL+AC + +L
Sbjct: 108 PVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNL 167
Query: 130 AQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVK 189
+ H+Q +L C V+V N+++ +Y + A+++FDE+ RDV+S LI Y +
Sbjct: 168 GRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYAR 227
Query: 190 AGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSA 249
G++ A +LF+ +P +D V+W +V G+AQ+ + +EA++ F M I+ D + +
Sbjct: 228 VGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGY 287
Query: 250 LSACARLGELEQGKNIHRYIELNQIRVDS-----FLSTGLVDFYAKCGYINTAIEIFESS 304
+SACA+LG K R +++ Q S + + L+D Y+KCG + A+ +F S
Sbjct: 288 ISACAQLGA---SKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSM 344
Query: 305 QEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMI-EARIKPDGVTILGALVGCSHAGLVDEA 363
KN+FT+++M++GLA HG + +L F M+ + IKP+ VT +GAL+ CSH+GLVD+
Sbjct: 345 NNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQG 404
Query: 364 RKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM---PMGGDVFVWSGLLG 420
R++FD M +GV HY CM DLLGR G ++EALE+IK M P GG VW LLG
Sbjct: 405 RQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGG---VWGALLG 461
Query: 421 GCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKN 480
CRIH N EIAE AAEH+ +L+P+ G Y +L++VYA+A W V+++R+ + +KK
Sbjct: 462 ACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKT 521
Query: 481 AGCS-LIQLNG 490
S ++ NG
Sbjct: 522 PAVSWVVDKNG 532
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
Identities = 162/456 (35%), Positives = 260/456 (57%)
Query: 35 HILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLN 94
H+L L ++ S + + A +F+ P S+N +I +
Sbjct: 181 HVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEK 240
Query: 95 AVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154
A+ ++ M + + PD + L+ +CS L + + + V + G + ++N+LM
Sbjct: 241 AIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMD 300
Query: 155 VYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTL 214
++ + +A+ +FD + R +VS T+I GY + G L +R+LFD M +D V W +
Sbjct: 301 MFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAM 360
Query: 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQI 274
+ G Q+ + ++A+ LF M + KPD I ++ LSAC++LG L+ G IHRYIE +
Sbjct: 361 IGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSL 420
Query: 275 RVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSR 334
++ L T LVD YAKCG I+ A+ +F Q +N T+ A++ GLA+HG ++ YF+
Sbjct: 421 SLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNE 480
Query: 335 MIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAG 394
MI+A I PD +T +G L C H G++ R F +M+S + ++ +LKHY M DLLGRAG
Sbjct: 481 MIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAG 540
Query: 395 LIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454
L+EEA +++ MPM D VW LL GCR+HGNVE+ E AA+ +++L P D G+Y +L
Sbjct: 541 LLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDG 600
Query: 455 VYANADRWEDVVKIRRSLDAGKIKKNAGCSLIQLNG 490
+Y A+ WED + RR ++ ++K GCS I++NG
Sbjct: 601 MYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNG 636
|
|
| TAIR|locus:2159602 AT5G08510 "AT5G08510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 160/426 (37%), Positives = 255/426 (59%)
Query: 61 LSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRA 120
L YA +F++ TF YN +I+A+ + P ++VL++ + + P ++F F+ A
Sbjct: 32 LVYARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAA 91
Query: 121 CSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSC 180
+ S + +HSQ + GF D F +L+ Y L A+ +FDE+ RDV
Sbjct: 92 SASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVW 151
Query: 181 NTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLF-CNMMDLDI 239
N +I GY + GD+ A +LFD MP ++ SW T+++G++Q+ EA+++F C D +
Sbjct: 152 NAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSV 211
Query: 240 KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIE 299
KP++I +VS L ACA LGELE G+ + Y N + ++ ++ Y+KCG I+ A
Sbjct: 212 KPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKR 271
Query: 300 IFES-SQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAG 358
+FE ++NL +WN+M+ LA HG +L F++M+ KPD VT +G L+ C H G
Sbjct: 272 LFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGG 331
Query: 359 LVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGL 418
+V + ++LF ME V+ +S +L+HYGCM DLLGR G ++EA ++IK MPM D VW L
Sbjct: 332 MVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTL 391
Query: 419 LGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIK 478
LG C HGNVEIAE A+E + KL+P + G +++++YA ++W+ V+++R+ + +
Sbjct: 392 LGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMT 451
Query: 479 KNAGCS 484
K AG S
Sbjct: 452 KAAGYS 457
|
|
| TAIR|locus:1009023396 AT5G40405 "AT5G40405" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 166/482 (34%), Positives = 282/482 (58%)
Query: 12 TIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNI 71
T K++ QIHA G L H++ + A+ +S L YA I +
Sbjct: 18 TFKEVRQIHAKLYVDGTL--KDDHLVGHFVKAVA----LSDHKY-----LDYANQILDRS 66
Query: 72 PYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVS--IPPDFYSFPFLLRACSQLCSHSL 129
P+ F+ N++IRAH P + + ++ + + PD Y+ FL++AC+ L
Sbjct: 67 EKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRET 126
Query: 130 AQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVK 189
+H ++ GF D V L+ +Y L ++F+ I D V ++ +
Sbjct: 127 GLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACAR 186
Query: 190 AGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLD-IKPDNIALVS 248
GD+ AR+LF+ MP RD ++W +++GYAQ + EA+ +F ++M L+ +K + +A++S
Sbjct: 187 CGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVF-HLMQLEGVKVNGVAMIS 245
Query: 249 ALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKN 308
LSAC +LG L+QG+ H YIE N+I++ L+T LVD YAKCG + A+E+F +EKN
Sbjct: 246 VLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKN 305
Query: 309 LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFD 368
++TW++ L GLAM+G G L FS M + + P+ VT + L GCS G VDE ++ FD
Sbjct: 306 VYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFD 365
Query: 369 EMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNV 428
M + +G+ +L+HYGC+ DL RAG +E+A+ +I++MPM VWS LL R++ N+
Sbjct: 366 SMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNL 425
Query: 429 EIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCSLIQL 488
E+ A++ +++L+ + G Y +L+++YA+++ W++V +R+S+ + ++K GCS++++
Sbjct: 426 ELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEV 485
Query: 489 NG 490
NG
Sbjct: 486 NG 487
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 168/484 (34%), Positives = 280/484 (57%)
Query: 7 IKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALS 66
++ C + + IH L L+ S + + +L A+ S+ + PT + L YA
Sbjct: 19 LQSCSSFSDLKIIHGFLLRTHLI--SDVFVASRLL-ALCVDD--STFNKPT-NLLGYAYG 72
Query: 67 IFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCS 126
IF+ I P+ F +N +IR + + P A ++QM I PD +FPFL++A S++
Sbjct: 73 IFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMEC 132
Query: 127 HSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDG 186
+ + HSQ+++ GF DV+V NSL+H+Y + A +F ++ +RDVVS +++ G
Sbjct: 133 VLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAG 192
Query: 187 YVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIAL 246
Y K G + +AR++FD MP R+ +W ++ GYA+++ E+AI LF M + + +
Sbjct: 193 YCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVM 252
Query: 247 VSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE 306
VS +S+CA LG LE G+ + Y+ + + V+ L T LVD + +CG I AI +FE E
Sbjct: 253 VSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPE 312
Query: 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKL 366
+ +W++++ GLA+HG ++ YFS+MI P VT L CSH GLV++ ++
Sbjct: 313 TDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEI 372
Query: 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHG 426
++ M+ +G+ L+HYGC+ D+LGRAG + EA I KM + + + LLG C+I+
Sbjct: 373 YENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYK 432
Query: 427 NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCSLI 486
N E+AE ++K+KPE G Y +L+++YA A +W+ + +R + +KK G SLI
Sbjct: 433 NTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLI 492
Query: 487 QLNG 490
+++G
Sbjct: 493 EIDG 496
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
Identities = 161/413 (38%), Positives = 251/413 (60%)
Query: 93 LNAVVLFSQMRTVS-IPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNS 151
L A+ LF +M + + P+ ++FP +L+AC++ + IH LK GF D FV+++
Sbjct: 109 LIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSN 168
Query: 152 LMHVYCVFHRLRDAQELF-------DEILYRD-------VVSCNTLIDGYVKAGDLAHAR 197
L+ +Y + ++DA+ LF D ++ D +V N +IDGY++ GD AR
Sbjct: 169 LVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAAR 228
Query: 198 QLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLG 257
LFD+M R VSW T+++GY+ + ++A+++F M DI+P+ + LVS L A +RLG
Sbjct: 229 MLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLG 288
Query: 258 ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLV 317
LE G+ +H Y E + IR+D L + L+D Y+KCG I AI +FE +N+ TW+AM+
Sbjct: 289 SLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMIN 348
Query: 318 GLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVS 377
G A+HG ++ F +M +A ++P V + L CSH GLV+E R+ F +M SV G+
Sbjct: 349 GFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLE 408
Query: 378 KELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEH 437
++HYGCM DLLGR+GL++EA E I MP+ D +W LLG CR+ GNVE+ + A
Sbjct: 409 PRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANI 468
Query: 438 VMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCSLIQLNG 490
+M + P D G Y L+++YA+ W +V ++R + I+K+ GCSLI ++G
Sbjct: 469 LMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDG 521
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FLS9 | PP441_ARATH | No assigned EC number | 0.5417 | 0.9755 | 0.9579 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 490 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-92 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-79 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-47 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-30 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 298 bits (764), Expect = 4e-92
Identities = 149/494 (30%), Positives = 252/494 (51%), Gaps = 51/494 (10%)
Query: 1 MTLNNFIKRCKTIKQI---HQIHAHFLTKGLLF-LSPCHILTTILYAITTFKPISSASSP 56
MT+ + I C+ + ++H + + G +S C+ L + ++ ++
Sbjct: 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE------- 341
Query: 57 TTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPF 116
A +F+ + S+ +I + P A+ ++ M ++ PD +
Sbjct: 342 -------AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394
Query: 117 LLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRD 176
+L AC+ L + +H + G I
Sbjct: 395 VLSACACLGDLDVGVKLHELAERKGLI-------------------------------SY 423
Query: 177 VVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMD 236
VV N LI+ Y K + A ++F +P +D +SW +++AG +++C EA+ F M+
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML- 482
Query: 237 LDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINT 296
L +KP+++ L++ALSACAR+G L GK IH ++ I D FL L+D Y +CG +N
Sbjct: 483 LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 297 AIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH 356
A F +S EK++ +WN +L G HG G +++ F+RM+E+ + PD VT + L CS
Sbjct: 543 AWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 357 AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWS 416
+G+V + + F ME Y ++ LKHY C+ DLLGRAG + EA I KMP+ D VW
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661
Query: 417 GLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476
LL CRIH +VE+ E AA+H+ +L P G Y +L ++YA+A +W++V ++R+++
Sbjct: 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
Query: 477 IKKNAGCSLIQLNG 490
+ + GCS +++ G
Sbjct: 722 LTVDPGCSWVEVKG 735
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 261 bits (668), Expect = 2e-79
Identities = 133/425 (31%), Positives = 203/425 (47%), Gaps = 31/425 (7%)
Query: 64 ALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQ 123
A +F+ +P + S+ TII + A LF +M + +F +LRA +
Sbjct: 177 ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236
Query: 124 LCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTL 183
L S Q +H VLK G + D FV SC L
Sbjct: 237 LGSARAGQQLHCCVLKTGVVGDTFV------------------------------SC-AL 265
Query: 184 IDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDN 243
ID Y K GD+ AR +FD MP + V+W +++AGYA EEA+ L+ M D + D
Sbjct: 266 IDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 244 IALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFES 303
+ +RL LE K H + +D +T LVD Y+K G + A +F+
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 304 SQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEA 363
KNL +WNA++ G HG G ++ F RMI + P+ VT L L C ++GL ++
Sbjct: 386 MPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
Query: 364 RKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCR 423
++F M + + HY CM +LLGR GL++EA MI++ P V +W+ LL CR
Sbjct: 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACR 505
Query: 424 IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGC 483
IH N+E+ AAE + + PE Y VL ++Y ++ R + K+ +L + + C
Sbjct: 506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPAC 565
Query: 484 SLIQL 488
+ I++
Sbjct: 566 TWIEV 570
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 2e-47
Identities = 106/388 (27%), Positives = 184/388 (47%), Gaps = 42/388 (10%)
Query: 61 LSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRA 120
L +A +F +P FS+N ++ + A+ L+ +M + PD Y+FP +LR
Sbjct: 137 LVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196
Query: 121 CSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSC 180
C + + + +H+ V++ GF DV V+N+L+ +
Sbjct: 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITM------------------------- 231
Query: 181 NTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIK 240
YVK GD+ AR +FDRMP RD +SW +++GY ++ +C E ++LF M +L +
Sbjct: 232 ------YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285
Query: 241 PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEI 300
PD + + S +SAC LG+ G+ +H Y+ VD + L+ Y G A ++
Sbjct: 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 301 FESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLV 360
F + K+ +W AM+ G +GL +L ++ M + + PD +TI L C+ G +
Sbjct: 346 FSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405
Query: 361 DEARKLFDEMESVYGVSKELKHYGCMA----DLLGRAGLIEEALEMIKKMPMGGDVFVWS 416
D KL + K L Y +A ++ + I++ALE+ +P DV W+
Sbjct: 406 DVGVKLHE-----LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWT 459
Query: 417 GLLGGCRI-HGNVEIAEAAAEHVMKLKP 443
++ G R+ + E + ++ LKP
Sbjct: 460 SIIAGLRLNNRCFEALIFFRQMLLTLKP 487
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-30
Identities = 73/246 (29%), Positives = 118/246 (47%), Gaps = 2/246 (0%)
Query: 181 NTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIK 240
N ++ +VK G L AR+LFD MP R+ SWGT++ G + EA LF M +
Sbjct: 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD 221
Query: 241 PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEI 300
+ V L A A LG G+ +H + + D+F+S L+D Y+KCG I A +
Sbjct: 222 AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV 281
Query: 301 FESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLV 360
F+ EK WN+ML G A+HG +L + M ++ + D T + S L+
Sbjct: 282 FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341
Query: 361 DEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLG 420
+ A++ + G ++ + DL + G +E+A + +MP ++ W+ L+
Sbjct: 342 EHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-KNLISWNALIA 399
Query: 421 GCRIHG 426
G HG
Sbjct: 400 GYGNHG 405
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 4e-25
Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 8/249 (3%)
Query: 181 NTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIK 240
N ++ +V+ G+L HA +F +MP RD SW LV GYA++ +EA+ L+ M+ ++
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 241 PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEI 300
PD L C + +L +G+ +H ++ +D + L+ Y KCG + +A +
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 301 FESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLV 360
F+ ++ +WNAM+ G +G L F M E + PD +TI + C L+
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC---ELL 301
Query: 361 DEARKLFDEMESVY---GVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSG 417
+ +L EM G + ++ + + G EA ++ +M D W+
Sbjct: 302 GD-ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTA 359
Query: 418 LLGGCRIHG 426
++ G +G
Sbjct: 360 MISGYEKNG 368
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 5e-10
Identities = 58/256 (22%), Positives = 98/256 (38%), Gaps = 48/256 (18%)
Query: 250 LSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNL 309
+ AC L + K ++ ++E + D ++ ++ + KCG + A +F+ E+NL
Sbjct: 130 VEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL 189
Query: 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGAL------------------ 351
+W ++ GL G R + F M E + T + L
Sbjct: 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249
Query: 352 -----------VGC------SHAGLVDEARKLFDEM--ESVYGVSKELKHYGCMADLLGR 392
V C S G +++AR +FD M ++ + L Y L G
Sbjct: 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYA----LHGY 305
Query: 393 AGLIEEALEMIKKMPMGG---DVFVWSGLLGGCRIHGNVEIA-EAAAEHVMKLKPEDGGV 448
+ EEAL + +M G D F +S ++ +E A +A A + P D
Sbjct: 306 S---EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 449 YKVLADVYANADRWED 464
L D+Y+ R ED
Sbjct: 363 NTALVDLYSKWGRMED 378
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-09
Identities = 46/200 (23%), Positives = 87/200 (43%), Gaps = 4/200 (2%)
Query: 223 QCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLST 282
Q E+A++L +M +L + D A V+ C +E+G + + + L
Sbjct: 66 QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125
Query: 283 GLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP 342
++ + + G + A +F E++LF+WN ++ G A G +L + RM+ A ++P
Sbjct: 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185
Query: 343 DGVTILGALVGCSHAGLVDEARKLFDEMESV-YGVSKELKHYGCMADLLGRAGLIEEALE 401
D T L C G+ D AR V +G ++ + + + G + A
Sbjct: 186 DVYTFPCVLRTC--GGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243
Query: 402 MIKKMPMGGDVFVWSGLLGG 421
+ +MP D W+ ++ G
Sbjct: 244 VFDRMPR-RDCISWNAMISG 262
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 6e-08
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 176 DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR----DAVSWGTLVAGYAQ 220
DVV+ NTLIDGY K G + A +LF+ M R + ++ L+ G +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 10/191 (5%)
Query: 250 LSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFE----SSQ 305
+S CA +++ + R ++ ++ D L T L+ AK G ++ E+F +
Sbjct: 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV 503
Query: 306 EKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALV-GCSHAGLVDEAR 364
E N+ T+ A++ G A G + + M +KPD V + AL+ C +G VD A
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV-VFNALISACGQSGAVDRAF 562
Query: 365 KLFDEMES-VYGVSKELKHYGCMADLLGRAGLIEEALE---MIKKMPMGGDVFVWSGLLG 420
+ EM++ + + + G + AG ++ A E MI + + G V++ +
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622
Query: 421 GCRIHGNVEIA 431
C G+ + A
Sbjct: 623 SCSQKGDWDFA 633
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 61/273 (22%), Positives = 115/273 (42%), Gaps = 43/273 (15%)
Query: 182 TLIDGYVKAGDLAHARQLFDRMPFR----DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDL 237
TLI K+G + ++F M + ++G L+ G A++ Q +A + M
Sbjct: 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536
Query: 238 DIKPDNIALVSALSACARLGELEQGKNI--HRYIELNQIRVDSFLSTGLVDFYAKCGYIN 295
++KPD + + +SAC + G +++ ++ E + I D L+ A G ++
Sbjct: 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596
Query: 296 TAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS 355
A E+++ E N+ + P+ TI A+ CS
Sbjct: 597 RAKEVYQMIHEYNI-----------------------------KGTPEVYTI--AVNSCS 625
Query: 356 HAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG---DV 412
G D A ++D+M+ GV + + + D+ G AG +++A E+++ G
Sbjct: 626 QKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684
Query: 413 FVWSGLLGGCRIHGNVEIAEAAAEHV--MKLKP 443
+S L+G C N + A E + +KL+P
Sbjct: 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 7e-07
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 176 DVVSCNTLIDGYVKAGDLAHARQLFDRMP 204
DVV+ NTLIDG +AG + A +L D M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 145 DVFVLNSLMHVYCVFHRLRDAQELFDEILYR----DVVSCNTLIDGYVK 189
DV N+L+ YC ++ +A +LF+E+ R +V + + LIDG K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACAR 255
D V++ TL+ GY + + EEA++LF M IKP+ + +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 7e-05
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 178 VSCNTLIDGYVKAGDLAHARQLFDRM 203
V+ NTLIDG KAG + A +LF M
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM 26
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 1e-04
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 178 VSCNTLIDGYVKAGDLAHARQLFDRM 203
V+ N+LI GY KAG L A +LF M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 74 PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQ 123
P +YNT+I + A+ LF++M+ I P+ Y++ L+ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD 242
V++ TL+ G ++ + EEA++LF M + I+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 490 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.73 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.67 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.63 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.48 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.42 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.42 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.42 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.38 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.37 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.36 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.35 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.34 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.34 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.33 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.32 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.3 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.3 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.28 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.28 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.24 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.23 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.21 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.2 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.19 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.17 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.17 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.16 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.13 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.13 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.13 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.12 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.12 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.09 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.08 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.07 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.04 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.03 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.02 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.99 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.97 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.96 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.91 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.86 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.85 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.85 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.84 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.74 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.71 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.71 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.69 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.68 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.68 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.64 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.63 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.61 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.59 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.57 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.51 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.48 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.48 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.48 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.47 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.45 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.44 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.44 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.41 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.32 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.3 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.27 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.24 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.24 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.21 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.18 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.18 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.16 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.1 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.09 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.07 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.06 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.06 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.03 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.02 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.98 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.98 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.97 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.96 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.94 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.92 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.92 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.85 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.85 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.84 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.82 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.8 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.79 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.79 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.78 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.77 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.76 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.76 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.75 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.73 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.72 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.71 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.69 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.67 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.67 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.63 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.62 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.62 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.61 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.6 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.6 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.6 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.6 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.59 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.56 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.55 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.52 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.51 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.51 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.51 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.49 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.43 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.4 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.39 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.36 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.36 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.34 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.32 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.29 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.29 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.28 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.24 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.23 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.22 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.22 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.2 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.19 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.18 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.11 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.11 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.1 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.08 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.01 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.94 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.93 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.88 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.74 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.73 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.71 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.61 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.57 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.44 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.28 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.27 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.25 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.19 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.17 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.16 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.16 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.14 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.11 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.11 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.1 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.08 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.08 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.0 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.92 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.91 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.88 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.86 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.85 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.85 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.72 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.72 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.7 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.67 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.64 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.55 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.54 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.54 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.49 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.48 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.4 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.39 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.39 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.32 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 95.31 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.3 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.27 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.24 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.23 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.2 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.18 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.14 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.11 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.01 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.0 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.9 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.89 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.72 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.69 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.59 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.4 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.4 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.31 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.23 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.15 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.09 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.9 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.9 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.88 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.86 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.85 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.6 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 93.59 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.49 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.4 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.33 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 93.16 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.06 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.04 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.01 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.01 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.86 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.81 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.8 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.45 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.15 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.11 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 92.1 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.95 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.28 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.89 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.87 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 90.74 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.64 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.64 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 90.37 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.32 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.32 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.15 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.96 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.84 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 89.83 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 89.71 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.66 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.52 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.05 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.02 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 88.93 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.85 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.76 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 88.74 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.69 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.68 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 88.58 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.47 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.29 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.23 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 87.96 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.69 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.46 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 87.33 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.26 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.14 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 86.7 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 86.18 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.78 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.36 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.25 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 84.99 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 84.82 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.78 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 84.74 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 84.19 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 83.55 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.36 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 82.51 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 82.26 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 81.22 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 81.14 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.08 | |
| cd08819 | 88 | CARD_MDA5_2 Caspase activation and recruitment dom | 81.08 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.89 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 80.63 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.18 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-72 Score=579.36 Aligned_cols=475 Identities=35% Similarity=0.670 Sum_probs=442.9
Q ss_pred CcHHHHHHHhhch---hHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcc
Q 042265 1 MTLNNFIKRCKTI---KQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTF 77 (490)
Q Consensus 1 ~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 77 (490)
+||+.++++|+.. ..++.+|..+.+.| +. |++.++|.|+.+|+ +.|++++|.++|++|++||..
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g-~~--~~~~~~n~Li~~y~----------k~g~~~~A~~lf~~m~~~d~~ 254 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFG-FE--LDVDVVNALITMYV----------KCGDVVSARLVFDRMPRRDCI 254 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcC-CC--cccchHhHHHHHHh----------cCCCHHHHHHHHhcCCCCCcc
Confidence 5899999999754 55689999999999 77 99999999999999 999999999999999999999
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042265 78 SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYC 157 (490)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 157 (490)
+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|+
T Consensus 255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~ 334 (857)
T PLN03077 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334 (857)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHH-------------------------------------------
Q 042265 158 VFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLA------------------------------------------- 194 (490)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------------------------------------- 194 (490)
+.|++++|.++|++|..||..+|+.++.+|++.|+++
T Consensus 335 k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~ 414 (857)
T PLN03077 335 SLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414 (857)
T ss_pred hcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999999998777777777776655555444
Q ss_pred ---------------------------HHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 042265 195 ---------------------------HARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALV 247 (490)
Q Consensus 195 ---------------------------~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 247 (490)
+|.++|++|.++|..+|+.++.+|++.|+.++|+++|++|.. +++||..||+
T Consensus 415 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~ 493 (857)
T PLN03077 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLI 493 (857)
T ss_pred HHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHH
Confidence 455555555556777777777777777888888888888875 5899999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHH
Q 042265 248 SALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRL 327 (490)
Q Consensus 248 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 327 (490)
.++.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|++.|++++|.++|+.+ .+|..+||++|.+|+++|+.++
T Consensus 494 ~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 328 SLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 328 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|.
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999667999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCceeEEE
Q 042265 408 MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCSLIQ 487 (490)
Q Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~ 487 (490)
.+||..+|++|+.+|..+|+.+.++...+++.+++|++...|..+++.|.+.|+|++|.++.+.|+++|++++||++|++
T Consensus 653 ~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 653 ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCC
Q 042265 488 LNG 490 (490)
Q Consensus 488 ~~~ 490 (490)
++|
T Consensus 733 ~~~ 735 (857)
T PLN03077 733 VKG 735 (857)
T ss_pred ECC
Confidence 986
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-69 Score=546.76 Aligned_cols=473 Identities=26% Similarity=0.445 Sum_probs=451.1
Q ss_pred cHHHHHHHh---hchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC----CC
Q 042265 2 TLNNFIKRC---KTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP----YP 74 (490)
Q Consensus 2 ~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~ 74 (490)
+++.++.++ ++++.+-.+++.|...+.+. |+..+|+.++..|+ +.++++.|.+++..|. .|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~--~~~~t~~~ll~a~~----------~~~~~~~a~~l~~~m~~~g~~~ 156 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFT--LPASTYDALVEACI----------ALKSIRCVKAVYWHVESSGFEP 156 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhCCCc
Confidence 355565544 56788888888888765356 89999999999999 9999999999998875 58
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
|..+||.++..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~ 232 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLR 232 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHH
Confidence 999999999999999999999999999964 8999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHhc----ccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHH
Q 042265 155 VYCVFHRLRDAQELFDEI----LYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQL 230 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 230 (490)
++.+.|..+.+.+++..+ ..+|..+|+.++.+|++.|++++|.++|++|.++|..+||.++.+|++.|++++|+++
T Consensus 233 a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 233 ASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999998877 3468899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCee
Q 042265 231 FCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLF 310 (490)
Q Consensus 231 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 310 (490)
|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|++||..+++.|+.+|++.|++++|.++|++|.++|..
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~ 392 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
+||.||.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.+++.|+..+|+.++++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998779999999999999999
Q ss_pred hhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 042265 391 GRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
++.|++++|.++++++...|+..+|++++.+|..+|+.+.|..+++++.+..|++..+|..++.+|.+.|++++|.++++
T Consensus 473 ~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 473 GREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCceeEEEeCC
Q 042265 471 SLDAGKIKKNAGCSLIQLNG 490 (490)
Q Consensus 471 ~m~~~~~~~~~~~~~~~~~~ 490 (490)
+|++.|+++.||++|++++|
T Consensus 553 ~m~~~g~~k~~g~s~i~~~~ 572 (697)
T PLN03081 553 TLKRKGLSMHPACTWIEVKK 572 (697)
T ss_pred HHHHcCCccCCCeeEEEECC
Confidence 99999999999999999875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-66 Score=531.93 Aligned_cols=466 Identities=24% Similarity=0.455 Sum_probs=432.4
Q ss_pred cHHHHHHHhhc---hhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCccc
Q 042265 2 TLNNFIKRCKT---IKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFS 78 (490)
Q Consensus 2 ~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 78 (490)
+|..++++|.+ ++.+..+|.++.+.| +. ++..++|.|+..|+ +.|+++.|+++|++|++||..+
T Consensus 88 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~n~li~~~~----------~~g~~~~A~~~f~~m~~~d~~~ 154 (857)
T PLN03077 88 AYVALFRLCEWKRAVEEGSRVCSRALSSH-PS--LGVRLGNAMLSMFV----------RFGELVHAWYVFGKMPERDLFS 154 (857)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CC--CCchHHHHHHHHHH----------hCCChHHHHHHHhcCCCCCeeE
Confidence 68889999864 566789999999998 66 89999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 042265 79 YNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCV 158 (490)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 158 (490)
||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..+++.|+.+|++
T Consensus 155 ~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k 234 (857)
T PLN03077 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999988998888888888888
Q ss_pred cCChHHHHHHHHhcccCCchhHHHHHHH----------------------------------------------------
Q 042265 159 FHRLRDAQELFDEILYRDVVSCNTLIDG---------------------------------------------------- 186 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~---------------------------------------------------- 186 (490)
.|++++|.++|++|..+|..+||++|.+
T Consensus 235 ~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~ 314 (857)
T PLN03077 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314 (857)
T ss_pred CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 8888888888888866655555555554
Q ss_pred ------------------HHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 042265 187 ------------------YVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVS 248 (490)
Q Consensus 187 ------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 248 (490)
|++.|++++|.++|++|..+|..+|+.++.+|.+.|++++|+++|++|.+.|+.||..||+.
T Consensus 315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 45667777777778888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHH
Q 042265 249 ALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLS 328 (490)
Q Consensus 249 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 328 (490)
++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC
Q 042265 329 LVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM 408 (490)
Q Consensus 329 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (490)
+.+|++|.. ++.||..||..++.+|++.|+.+.+.+++..+.+. |+.++..+++.|+++|+++|++++|.++|+++
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-- 550 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-- 550 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--
Confidence 999999986 59999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh-cCCCCCCCceeE
Q 042265 409 GGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDGGVYKVLADVYANADRWEDVVKIRRSLD-AGKIKKNAGCSL 485 (490)
Q Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~ 485 (490)
.+|..+|+.++.+|.++|+.++|.++|++|.+ ..|+. .+|..++.+|.+.|++++|.++|++|. +.|+.|+..++.
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 67999999999999999999999999999998 55654 599999999999999999999999999 679999876543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=505.29 Aligned_cols=398 Identities=14% Similarity=0.238 Sum_probs=234.6
Q ss_pred hhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcC
Q 042265 10 CKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLF 89 (490)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 89 (490)
+|+++.+..+++.|.+.|.+. ++..+++.++..|. +.|.+++|.++|+.|+.||..+|+.++.+|++.
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~--~~~v~~~~li~~~~----------~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLD--MDKIYHAKFFKACK----------KQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASS 450 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCC--chHHHHHHHHHHHH----------HCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 367788888888888887433 55555555666666 556666666666666556666666666666666
Q ss_pred CCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 042265 90 SSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELF 169 (490)
Q Consensus 90 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 169 (490)
|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666555566666666666666666666666666
Q ss_pred Hhc----ccCCchhHHHHHHHHHhcCCHHHHHHHHhhCC------CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 042265 170 DEI----LYRDVVSCNTLIDGYVKAGDLAHARQLFDRMP------FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI 239 (490)
Q Consensus 170 ~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 239 (490)
++| ..||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 555 23455566666666666666666666655553 23555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC----CCeehHHHH
Q 042265 240 KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE----KNLFTWNAM 315 (490)
Q Consensus 240 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l 315 (490)
.|+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.+
T Consensus 611 ~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 611 KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555542 355555555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC
Q 042265 316 LVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL 395 (490)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (490)
|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|... |+.||..+|+.++.+|++.|+
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCC
Confidence 5555555555555555555555555555555555555555555555555555555554 555555555555555555555
Q ss_pred HHHHHHHHhhCCCC---CCHHHHHHHHH
Q 042265 396 IEEALEMIKKMPMG---GDVFVWSGLLG 420 (490)
Q Consensus 396 ~~~A~~~~~~~~~~---~~~~~~~~l~~ 420 (490)
+++|.+++++|... ||..+|+.++.
T Consensus 770 le~A~~l~~~M~k~Gi~pd~~tynsLIg 797 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIKPNLVMCRCITG 797 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55555555555422 25555555543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-62 Score=495.14 Aligned_cols=461 Identities=15% Similarity=0.206 Sum_probs=420.9
Q ss_pred cHHHHHHHhhc---hhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC----CC
Q 042265 2 TLNNFIKRCKT---IKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP----YP 74 (490)
Q Consensus 2 ~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~ 74 (490)
+++.++..|.. ...+..++..|. . |+..+||.|+..|+ +.|++++|.++|+.|. .|
T Consensus 408 ~~~~li~~~~~~g~~~eAl~lf~~M~-----~--pd~~Tyn~LL~a~~----------k~g~~e~A~~lf~~M~~~Gl~p 470 (1060)
T PLN03218 408 YHAKFFKACKKQRAVKEAFRFAKLIR-----N--PTLSTFNMLMSVCA----------SSQDIDGALRVLRLVQEAGLKA 470 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcC-----C--CCHHHHHHHHHHHH----------hCcCHHHHHHHHHHHHHcCCCC
Confidence 34566777754 455555554443 2 89999999999999 9999999999999986 58
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHhcc------cCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CeehHHHHHHHHHhcCCh
Q 042265 155 VYCVFHRLRDAQELFDEIL------YRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR----DAVSWGTLVAGYAQSDQC 224 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~ 224 (490)
+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+. +..+|+.+|.+|++.|++
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 9999999999999999994 578999999999999999999999999999744 678999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcc
Q 042265 225 EEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 225 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|
T Consensus 631 deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C----CCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCc
Q 042265 305 Q----EKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKEL 380 (490)
Q Consensus 305 ~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 380 (490)
. .||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|++++|.+++++|.+. |+.||.
T Consensus 711 ~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~ 789 (1060)
T PLN03218 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNL 789 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCH
Confidence 5 58999999999999999999999999999999999999999999999999999999999999999997 999999
Q ss_pred hHHHHHHhhhh----hcC-------------------CHHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 381 KHYGCMADLLG----RAG-------------------LIEEALEMIKKMPMG---GDVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 381 ~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
.+|+.++..+. +++ ..++|..+|++|... ||..+|+.++.++...+..+.+..+
T Consensus 790 ~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m 869 (1060)
T PLN03218 790 VMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRL 869 (1060)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHH
Confidence 99999987643 221 236789999998754 5999999999888888999999999
Q ss_pred HHHHHh-hCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCc
Q 042265 435 AEHVMK-LKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAG 482 (490)
Q Consensus 435 ~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 482 (490)
++.+.. ..+++..+|+.++.++.+. .++|..++++|...|+.|+-.
T Consensus 870 ~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 870 IENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 988765 5556667999999988332 368999999999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-60 Score=477.82 Aligned_cols=462 Identities=19% Similarity=0.250 Sum_probs=420.4
Q ss_pred CcHHHHHHHhhch---hHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcc
Q 042265 1 MTLNNFIKRCKTI---KQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTF 77 (490)
Q Consensus 1 ~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 77 (490)
+||+.++.+|++. +.++.+|..+.+.| +. |++.++|.|+.+|+ +.|++++|.++|++|+.||..
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~--~~~~~~n~Li~~y~----------k~g~~~~A~~lf~~m~~~~~~ 190 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSG-FE--PDQYMMNRVLLMHV----------KCGMLIDARRLFDEMPERNLA 190 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CC--cchHHHHHHHHHHh----------cCCCHHHHHHHHhcCCCCCee
Confidence 4799999999754 55689999999999 77 99999999999999 999999999999999999999
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042265 78 SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYC 157 (490)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 157 (490)
+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|+..|+.+.+.+++..+.+.|+.||..+++.|+++|+
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeehHHHHHHHHHhcCChhHHHHHHHH
Q 042265 158 VFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMP----FRDAVSWGTLVAGYAQSDQCEEAIQLFCN 233 (490)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (490)
+.|++++|.++|++|.++|..+|++++.+|++.|++++|.++|++|. .||..||+.++.+|++.|++++|.+++..
T Consensus 271 k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999994 67999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC----CCCe
Q 042265 234 MMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ----EKNL 309 (490)
Q Consensus 234 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~ 309 (490)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|.++|++|. .||.
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~ 426 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH 426 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH
Confidence 9999999999999999999999999999999999986 4789999999999999999999999999986 4899
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIE-ARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
.||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.++++++ +..|+..+|+.|+.
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----CCCCCHHHHHHHHH
Confidence 9999999999999999999999999986 699999999999999999999999999998875 67899999999999
Q ss_pred hhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCCchHHHHHH-------H--
Q 042265 389 LLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK--PEDGGVYKVLAD-------V-- 455 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~-------~-- 455 (490)
+|...|+++.|..+++++.. .| +..+|..++..|.+.|++++|.+++++|.+.. +....+|..+.. .
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~ 582 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCC
Confidence 99999999999999988653 34 67899999999999999999999999999832 222212211100 0
Q ss_pred -H-HhcCChHHHHHHHHHHhcCCCCCCCce
Q 042265 456 -Y-ANADRWEDVVKIRRSLDAGKIKKNAGC 483 (490)
Q Consensus 456 -~-~~~g~~~~A~~~~~~m~~~~~~~~~~~ 483 (490)
+ ....-++...++.++|.+.|..|+..+
T Consensus 583 ~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~ 612 (697)
T PLN03081 583 LHPQSREIYQKLDELMKEISEYGYVAEENE 612 (697)
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence 0 001124566778888889998887554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=275.20 Aligned_cols=440 Identities=15% Similarity=0.062 Sum_probs=256.5
Q ss_pred chhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHc
Q 042265 12 TIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTL 88 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 88 (490)
.++.+..++..+.+.. + +++.++..+...|. +.|++++|.+.|+++. +.+...+..+...+..
T Consensus 446 ~~~~A~~~~~~~~~~~--~--~~~~~~~~l~~~~~----------~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQ--P--DNASLHNLLGAIYL----------GKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511 (899)
T ss_pred CHHHHHHHHHHHHHhC--C--CCcHHHHHHHHHHH----------hCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 3344444444444332 1 44555555555555 5566666666665432 2334445555555556
Q ss_pred CCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 042265 89 FSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQEL 168 (490)
Q Consensus 89 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 168 (490)
.|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++|...++++.+.+ +.+...+..++..+.+.|++++|.++
T Consensus 512 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 589 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAI 589 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHH
Confidence 666666666666655542 2344455555555555666666666666655543 44455555566666666666666666
Q ss_pred HHhccc---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 042265 169 FDEILY---RDVVSCNTLIDGYVKAGDLAHARQLFDRMPF---RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD 242 (490)
Q Consensus 169 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 242 (490)
++++.. .+...|..+...+.+.|++++|...|+++.+ .+...+..+..++...|++++|...|+++.+.. +.+
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 668 (899)
T TIGR02917 590 LNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDN 668 (899)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Confidence 665532 2444566666666666666666666655432 244455566666666666666666666665542 233
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--CCeehHHHHHHHHH
Q 042265 243 NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--KNLFTWNAMLVGLA 320 (490)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~ 320 (490)
..++..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.|+.+.. |+..++..++.++.
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHH
Confidence 4555666666666666666666666665554 44555556666666666666666666665543 33345555666666
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHH
Q 042265 321 MHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEAL 400 (490)
Q Consensus 321 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (490)
..|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++.+ ..+.++..++.+...+...|+ ++|+
T Consensus 748 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~ 823 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRAL 823 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHH
Confidence 6666666666666666543 23455566666666666666666666666665 334555666666666666666 5566
Q ss_pred HHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 401 EMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 401 ~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
.+++++.. .| ++.++..+...+...|++++|...++++++..|.++.++..++.++.+.|++++|.+++++|.
T Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 824 EYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66665431 22 555566666666666777777777777776666666666666777777777777777666664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-30 Score=270.20 Aligned_cols=412 Identities=13% Similarity=0.069 Sum_probs=308.9
Q ss_pred CCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 042265 57 TTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTI 133 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 133 (490)
+.|++++|.++++.+. +++..+|+.+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 5555555555555443 2345566666666777777777777777666542 23334555566666666777777777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CC
Q 042265 134 HSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPF---RD 207 (490)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~ 207 (490)
++.+.+.+ +.+..++..+...+.+.|+.++|...++++... +...+..++..+.+.|++++|.++++.+.. .+
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 600 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS 600 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 77766654 555666667777777777777777777766332 344566677777777777777777776642 25
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
...|..++.++...|++++|...|+++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+...+..++..
T Consensus 601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 678 (899)
T TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 5677777788888888888888888777653 3355567777777777888888888888777664 5566777778888
Q ss_pred HHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
+...|++++|..+++.+.+ .+...+..+...+...|++++|.+.|+++...+ |+..++..+..++.+.|++++|.
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~ 756 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV 756 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888877764 245567777888888899999999998888764 45567777888888999999999
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
+.++++.+ ..+.+...+..+...|...|++++|.+.|+++.. .| ++.++..++..+...|+ .+|+..++++.+..
T Consensus 757 ~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 757 KTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 99999887 5667788888999999999999999999998753 33 78889999999999999 88999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 042265 443 PEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 477 (490)
|+++..+..++.++.+.|++++|.++++++.+.+.
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999998764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-22 Score=213.79 Aligned_cols=444 Identities=12% Similarity=0.059 Sum_probs=302.1
Q ss_pred HhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC--CC-cccH------
Q 042265 9 RCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY--PS-TFSY------ 79 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~------ 79 (490)
+.++.+.++..++++.... |.++.++..++..+. +.|+.++|.+.+++..+ |+ ...+
T Consensus 40 ~~~~~d~a~~~l~kl~~~~----p~~p~~~~~~~~~~l----------~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~ 105 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELID----PNNPDVIAARFRLLL----------RQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTM 105 (1157)
T ss_pred hhCChHHHHHHHHHHHccC----CCCHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 3356677778888777765 268889999999999 99999999999988752 32 2222
Q ss_pred ----------HHHHHHHHcCCCchhHHHHHHHhhhCCCCCCccc-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhH
Q 042265 80 ----------NTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYS-FPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFV 148 (490)
Q Consensus 80 ----------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 148 (490)
..+.+.+.+.|++++|++.|+.+.+.+ +|+... ...+.......|+.++|.+.++++.+.. |.+...
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~ 183 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGL 183 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHH
Confidence 233446888999999999999998753 333321 1112222334589999999999999875 667888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcccCCc------h-----------------hHH------------------------
Q 042265 149 LNSLMHVYCVFHRLRDAQELFDEILYRDV------V-----------------SCN------------------------ 181 (490)
Q Consensus 149 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~-----------------~~~------------------------ 181 (490)
+..+...+...|+.++|+..++++..... . .+.
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 88999999999999999999988632110 0 000
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHhhCCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHH-
Q 042265 182 ----------TLIDGYVKAGDLAHARQLFDRMPF--R-DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD-NIAL- 246 (490)
Q Consensus 182 ----------~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~- 246 (490)
.....+...|++++|+..|++... | +..++..+..++.+.|++++|+..|++..+...... ...+
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 113345678999999999988653 2 677888999999999999999999999887542221 1111
Q ss_pred -----------HHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehH
Q 042265 247 -----------VSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTW 312 (490)
Q Consensus 247 -----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 312 (490)
......+.+.|++++|...++++.+.. +.+...+..+..++...|++++|++.|+++.+. +...+
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~ 422 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAV 422 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 122445678899999999999988875 556677778888999999999999998887642 22222
Q ss_pred HH------------------------------------------HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042265 313 NA------------------------------------------MLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGA 350 (490)
Q Consensus 313 ~~------------------------------------------l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 350 (490)
.. +...+...|++++|++.|++..+.... +...+..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 21 223345678899999999988875322 45566777
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh------------------------------------------
Q 042265 351 LVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD------------------------------------------ 388 (490)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~------------------------------------------ 388 (490)
...+.+.|++++|...++++.+. .+.+...+..+..
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 88888999999999999988763 2223332222222
Q ss_pred --hhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHH
Q 042265 389 --LLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 389 --~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
.+...|+.++|.++++.-+ +++..+..+...+.+.|++++|+..|+++++..|+++.++..++.+|...|++++|.
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 2233334444444433111 133444555666666677777777777777666666666666666666666666666
Q ss_pred HHHHHHhc
Q 042265 467 KIRRSLDA 474 (490)
Q Consensus 467 ~~~~~m~~ 474 (490)
+.++++.+
T Consensus 658 ~~l~~ll~ 665 (1157)
T PRK11447 658 AQLAKLPA 665 (1157)
T ss_pred HHHHHHhc
Confidence 66665543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-22 Score=213.11 Aligned_cols=409 Identities=11% Similarity=0.036 Sum_probs=329.5
Q ss_pred CCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc---cHH------------HHH
Q 042265 57 TTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY---SFP------------FLL 118 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~------------~ll 118 (490)
..|++++|+..|++.. +.+...+..+...+.+.|++++|+..|++..+.. |+.. .+. ...
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHHHHHHHH
Confidence 7899999999998764 4477889999999999999999999999998754 3322 121 223
Q ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHH
Q 042265 119 RACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAH 195 (490)
Q Consensus 119 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 195 (490)
..+.+.|++++|...++++++.. +.+...+..+..++...|++++|++.|+++.+. +...+..+...+. .++.++
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~ 436 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEK 436 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHH
Confidence 45678899999999999999975 667778888999999999999999999999653 3446666666664 568899
Q ss_pred HHHHHhhCCCCC------------eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 042265 196 ARQLFDRMPFRD------------AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGK 263 (490)
Q Consensus 196 a~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 263 (490)
|..+++.+.... ...+..+...+...|++++|++.|++.++.. +-+...+..+...+.+.|++++|.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999998775321 2345667788899999999999999998864 235667788899999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCC--e-----------ehHHHHHHHHHHcCChHHHHH
Q 042265 264 NIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKN--L-----------FTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-----------~~~~~l~~~~~~~~~~~~A~~ 330 (490)
..++++.+.. +.+...+..+...+...++.++|...++.+.... . ..+..+...+...|+.++|..
T Consensus 516 ~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 516 ALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999998765 4566666666677888999999999999886431 1 112345667889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-
Q 042265 331 YFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG- 409 (490)
Q Consensus 331 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 409 (490)
+++. .+++...+..+...+.+.|++++|...|+++.+ ..+.+...+..++..|...|++++|.+.++.+...
T Consensus 595 ~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~ 667 (1157)
T PRK11447 595 LLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATA 667 (1157)
T ss_pred HHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 9872 244556777788889999999999999999998 45667888999999999999999999999987643
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc------hHHHHHHHHHhcCChHHHHHHHHHHhc-CCCC
Q 042265 410 G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG------VYKVLADVYANADRWEDVVKIRRSLDA-GKIK 478 (490)
Q Consensus 410 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~ 478 (490)
| +...+..+..++...|++++|.++++++++..|+++. .+..++..+...|++++|...|++... .|+.
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 3 6777888888999999999999999999997765543 566678999999999999999998864 3454
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-23 Score=186.87 Aligned_cols=370 Identities=14% Similarity=0.111 Sum_probs=182.2
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042265 78 SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYC 157 (490)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 157 (490)
+|..+...+-..|+++.|+.+|+.+.+.. +-....|..+..++...|+.+.|.+.|...++.+ |........+...+.
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHH
Confidence 44445555555555555555555555432 1133345555555555555555555555555432 111222233334444
Q ss_pred hcCChHHHHHHHHhcccCC---chhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---eehHHHHHHHHHhcCChhHHHHHH
Q 042265 158 VFHRLRDAQELFDEILYRD---VVSCNTLIDGYVKAGDLAHARQLFDRMPFRD---AVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
..|++.+|...+.+.++.+ ...|+.|...+...|++-.|++.|++..+-| ..+|-.|...|...+.+++|...|
T Consensus 196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 4555555555555443322 2345555555555555555555555544332 234555555555555555555555
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---C
Q 042265 232 CNMMDLDIKPD-NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---K 307 (490)
Q Consensus 232 ~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~ 307 (490)
.+.... .|+ ...+..+...|...|.+|.|+..|++..+.. |.-+..|+.|..++-..|++.+|.+.|.+... .
T Consensus 276 ~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ 352 (966)
T KOG4626|consen 276 LRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN 352 (966)
T ss_pred HHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc
Confidence 554442 232 2344445555555555555555555555443 22344555555555555555555555555443 1
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC-chHHHH
Q 042265 308 NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD-GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE-LKHYGC 385 (490)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 385 (490)
...+.+.|...+...|..++|..+|....+- .|. ....+.|...|-.+|++++|...|++..+ +.|+ ...|+.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~N 427 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSN 427 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHh
Confidence 2334555555555555555555555554442 222 23444455555555555555555555543 2222 344555
Q ss_pred HHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 386 MADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
+...|...|+.+.|...+.+.. ..| -+...+.|...|...|+..+|++.++.++++.|+.+.+|-.++.++.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 5555555555555555554432 233 34445555555555555555555555555555555555555554443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-23 Score=186.39 Aligned_cols=411 Identities=13% Similarity=0.059 Sum_probs=340.9
Q ss_pred CCCChhHHHHhhccCC--CC-CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 042265 57 TTDPLSYALSIFNNIP--YP-STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTI 133 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 133 (490)
+.|++++|++.-.-.- .| +....-.+-..+.+..+.+....--....+. .+.-..+|..+.+.+-..|+++.|...
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred hccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHH
Confidence 5899999988755432 12 2222223334455666666655444443333 234567899999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhH---HHHHHHHHhcCCHHHHHHHHhhCCC--C-C
Q 042265 134 HSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSC---NTLIDGYVKAGDLAHARQLFDRMPF--R-D 207 (490)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~--~-~ 207 (490)
++.+++.. +.....|..+..++...|+.+.|.+.|.+.++-++..+ +.+...+...|++++|...|.+..+ | =
T Consensus 139 y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f 217 (966)
T KOG4626|consen 139 YRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF 217 (966)
T ss_pred HHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce
Confidence 99999975 66788999999999999999999999999876655433 3345556678999999999887653 3 3
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD-NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
..+|..|...+..+|+...|+..|++.++. .|+ ...|..|...|...+.++.|...|.+..... +....++..+..
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~ 294 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLAC 294 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEE
Confidence 678999999999999999999999999874 454 3588999999999999999999999988775 566788888999
Q ss_pred HHHhcCCHHHHHHHHhccCC--CC-eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHH
Q 042265 287 FYAKCGYINTAIEIFESSQE--KN-LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEA 363 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 363 (490)
.|...|.++-|+..|++..+ |+ +..|+.|..++-..|++.+|+..|++..... ..-....+.|...+...|.+++|
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHH
Confidence 99999999999999999875 33 4689999999999999999999999998863 22457788999999999999999
Q ss_pred HHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 364 RKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM-PMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
..+|....+ -.+.-....+.|...|...|++++|+..+++. +.+| -+..++.+...|...|+.+.|++.+.+++.+
T Consensus 374 ~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 374 TRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 999999987 34445667899999999999999999999885 4566 6788999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 442 KPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 442 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+|.-..++..|+..|...|+..+|+.-++...+.
T Consensus 452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999999988654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-21 Score=190.88 Aligned_cols=390 Identities=14% Similarity=0.036 Sum_probs=295.6
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 042265 79 YNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCV 158 (490)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 158 (490)
+......+.+.|++++|+..|++..+. .|+...|..+..++...|++++|.+.++..++.+ +.+...+..+..++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445677888999999999999998874 5788889999999999999999999999999875 6677889999999999
Q ss_pred cCChHHHHHHHHhcccCCc---hhHHHHHHHHHhcCCHHHHHHHHhhCCCC-----------------------------
Q 042265 159 FHRLRDAQELFDEILYRDV---VSCNTLIDGYVKAGDLAHARQLFDRMPFR----------------------------- 206 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------- 206 (490)
.|++++|...|......+. .....++..+........+...++.-...
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999988766532211 11111111111111112222222111100
Q ss_pred C---eehHHHHHHHH---HhcCChhHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCh
Q 042265 207 D---AVSWGTLVAGY---AQSDQCEEAIQLFCNMMDLD-IKP-DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDS 278 (490)
Q Consensus 207 ~---~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 278 (490)
+ ...+..+...+ ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...+++..+.. +...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 0 01111111111 22468999999999998764 234 34567888888899999999999999998875 4456
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 042265 279 FLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS 355 (490)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 355 (490)
..+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...|++..+.. +.+...+..+...+.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 7888899999999999999999998764 356788999999999999999999999998864 225667777888899
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-C------H-HHHHHHHHHHHhcC
Q 042265 356 HAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-D------V-FVWSGLLGGCRIHG 426 (490)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~------~-~~~~~l~~~~~~~~ 426 (490)
+.|++++|...+++..+ ..+.+...++.+...+...|++++|.+.|++.. ..| + . ..++.....+...|
T Consensus 445 ~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999987 456677889999999999999999999998843 222 1 1 11222222344579
Q ss_pred CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 427 NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 427 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++++|.++++++++++|++..++..++.++.+.|++++|.+.|++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999888999999999999999999999988654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=185.21 Aligned_cols=299 Identities=13% Similarity=0.060 Sum_probs=180.5
Q ss_pred HHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------eehHHHHHHHHHhcCC
Q 042265 154 HVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPFRD-------AVSWGTLVAGYAQSDQ 223 (490)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~g~ 223 (490)
..+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+.... ...+..++..|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3455667777777777776443 22344555555555555555555555543221 1234445555555555
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhc
Q 042265 224 CEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFES 303 (490)
Q Consensus 224 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 303 (490)
+++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+....
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 555555555554432 22344455555555555555555555555544321111000
Q ss_pred cCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHH
Q 042265 304 SQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHY 383 (490)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 383 (490)
....+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.++++.+. .......++
T Consensus 179 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~ 252 (389)
T PRK11788 179 ----IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVL 252 (389)
T ss_pred ----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHH
Confidence 00123445556667777777777777776643 223445666667777778888888888877763 211223456
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh---c
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP-MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN---A 459 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~ 459 (490)
..++.+|...|++++|...++++. ..|+...+..++..+.+.|++++|..+++++++..|++. .+..+...+.. .
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCC
Confidence 677777888888888888877754 345555667777888888888888888888888888776 55555555443 4
Q ss_pred CChHHHHHHHHHHhcCCCCCCCce
Q 042265 460 DRWEDVVKIRRSLDAGKIKKNAGC 483 (490)
Q Consensus 460 g~~~~A~~~~~~m~~~~~~~~~~~ 483 (490)
|+.+++..++++|.+++++++|.+
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCCCE
Confidence 588888888888888888888874
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-20 Score=182.02 Aligned_cols=355 Identities=10% Similarity=-0.014 Sum_probs=195.2
Q ss_pred CCCChhHHHHhhccCCC------CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHH
Q 042265 57 TTDPLSYALSIFNNIPY------PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLA 130 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 130 (490)
+..+++.---.|..-++ .+..-...++..+.+.|++++|..+++...... +-+...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHH
Confidence 45556655555554442 123334456667778888888888888877653 22333455555666677888888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCC--C
Q 042265 131 QTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY--R-DVVSCNTLIDGYVKAGDLAHARQLFDRMP--F 205 (490)
Q Consensus 131 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~ 205 (490)
...++.+.+.. |.+...+..+...+.+.|++++|...+++... | +...+..+...+...|++++|...++.+. .
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 88888888765 56667777777888888888888888877744 3 34456666666666666666666665542 1
Q ss_pred C-CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042265 206 R-DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGL 284 (490)
Q Consensus 206 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (490)
| +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...+..+
T Consensus 175 P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~L 252 (656)
T PRK15174 175 PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSL 252 (656)
T ss_pred CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 2 22223222 2355666666666666666554322333333444555566666666666666666553 3344455555
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 285 VDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
..+|...|++++|. .+|...+++..+.. +.+...+..+...+...|++++|.
T Consensus 253 g~~l~~~G~~~eA~---------------------------~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 253 GLAYYQSGRSREAK---------------------------LQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred HHHHHHcCCchhhH---------------------------HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 55555555554310 01444444444432 112334444444555555555555
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGGD-VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
..++++.+ ..+.+...+..+..++.+.|++++|...++++. ..|+ ...+..+..++...|+.++|+..|+++++..
T Consensus 305 ~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 305 PLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 55555544 222333344444555555555555555555433 2232 2222223344555555555555555555555
Q ss_pred CCC
Q 042265 443 PED 445 (490)
Q Consensus 443 p~~ 445 (490)
|++
T Consensus 383 P~~ 385 (656)
T PRK15174 383 ASH 385 (656)
T ss_pred hhh
Confidence 543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-19 Score=178.78 Aligned_cols=439 Identities=12% Similarity=-0.006 Sum_probs=295.5
Q ss_pred hchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC--C-CcccHHHHHHHHH
Q 042265 11 KTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY--P-STFSYNTIIRAHT 87 (490)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~ 87 (490)
|..+.+...+++..+.. + .++.++..|...|. +.|++++|+..+++... | |...+..+ ..+
T Consensus 58 Gd~~~A~~~l~~Al~~d-P---~n~~~~~~LA~~yl----------~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i- 121 (987)
T PRK09782 58 NDEATAIREFEYIHQQV-P---DNIPLTLYLAEAYR----------HFGHDDRARLLLEDQLKRHPGDARLERSL-AAI- 121 (987)
T ss_pred CCHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHH----------HCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh-
Confidence 56677778888888876 3 56888999999999 89999999999987642 3 33333333 222
Q ss_pred cCCCchhHHHHHHHhhhCCC------------------------------------CCC--cccHHHH-HHHHhccCCcH
Q 042265 88 LFSSPLNAVVLFSQMRTVSI------------------------------------PPD--FYSFPFL-LRACSQLCSHS 128 (490)
Q Consensus 88 ~~g~~~~A~~~~~~m~~~~~------------------------------------~p~--~~~~~~l-l~~~~~~~~~~ 128 (490)
+++++|..+|+++.+... .|+ ....... .+.|.+.|+++
T Consensus 122 --~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred --ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 777788888888765421 111 2212222 45566677777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-
Q 042265 129 LAQTIHSQVLKLGFICDVFVLNSLMHVYCV-FHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR- 206 (490)
Q Consensus 129 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 206 (490)
.|++.+.++.+.+ +.+......|..+|.. .++ +++..+++...+.++..+..+...+.+.|+.++|.++++++..-
T Consensus 200 ~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 200 QADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 7777777777765 4455556666666666 355 77777766544557778888999999999999999999887510
Q ss_pred ----Ceeh------------------------------HHHHHHH-----------------------------------
Q 042265 207 ----DAVS------------------------------WGTLVAG----------------------------------- 217 (490)
Q Consensus 207 ----~~~~------------------------------~~~l~~~----------------------------------- 217 (490)
...+ .-.++..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 0000 0000111
Q ss_pred ----------------------------HHhcCChhHHHHHHHHHHhC-C-CCC--------------------------
Q 042265 218 ----------------------------YAQSDQCEEAIQLFCNMMDL-D-IKP-------------------------- 241 (490)
Q Consensus 218 ----------------------------~~~~g~~~~A~~~~~~m~~~-~-~~p-------------------------- 241 (490)
..+.|+.++|.++|+..... + ..+
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 12344555555555444331 0 001
Q ss_pred --------------------------------------CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHH
Q 042265 242 --------------------------------------DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTG 283 (490)
Q Consensus 242 --------------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 283 (490)
+...+..+..++.. ++.++|...+.+..... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 12222333333332 44455555555554442 33333333
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 042265 284 LVDFYAKCGYINTAIEIFESSQE--KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVD 361 (490)
Q Consensus 284 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 361 (490)
+...+...|++++|...|+++.. ++...+..+..++.+.|+.++|...+++..+.. +++...+..+.......|+++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHH
Confidence 44455678888888888876653 334455666677788888888888888887754 222233333334445569999
Q ss_pred HHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042265 362 EARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVM 439 (490)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 439 (490)
+|...+++..+. .|+...+..+..++.+.|++++|...+++.. ..| +...+..+...+...|++++|+..+++++
T Consensus 594 eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999998863 3567888889999999999999999998865 344 78888889999999999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 440 KLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 440 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+..|+++.++..++.++...|++++|...+++..+..
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999887653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=178.30 Aligned_cols=294 Identities=16% Similarity=0.083 Sum_probs=216.8
Q ss_pred HHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhc
Q 042265 83 IRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICD---VFVLNSLMHVYCVF 159 (490)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~ 159 (490)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445567788888999999888764 33445778888888888889999888888877532221 24567778888888
Q ss_pred CChHHHHHHHHhccc---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCe--------ehHHHHHHHHHhcCChhHHH
Q 042265 160 HRLRDAQELFDEILY---RDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDA--------VSWGTLVAGYAQSDQCEEAI 228 (490)
Q Consensus 160 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~ 228 (490)
|++++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+...+. ..+..++..+.+.|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 888888888888865 3556778888888888888888888887653311 13456677778888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--
Q 042265 229 QLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE-- 306 (490)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-- 306 (490)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|.+.|++++|...++++.+
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888887753 2345566777788888888888888888888764233345677788888888888888888887653
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc---cCcHHHHHHHHHHhHHhhCCCCCch
Q 042265 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH---AGLVDEARKLFDEMESVYGVSKELK 381 (490)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~ 381 (490)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+. ++.|++.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 55556677778888888888888888887765 5777777777766553 45788888888888875 6666665
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-19 Score=181.93 Aligned_cols=387 Identities=8% Similarity=-0.026 Sum_probs=250.9
Q ss_pred HHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 042265 81 TIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFH 160 (490)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 160 (490)
-.+......|+.++|++++.+..... +.+...+..+...+...|++++|.++++..++.. |.+...+..+..++...|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 34555666777777777777776521 2333356677777777777777777777777653 555666667777777777
Q ss_pred ChHHHHHHHHhccc--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHH
Q 042265 161 RLRDAQELFDEILY--R-DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNM 234 (490)
Q Consensus 161 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m 234 (490)
++++|...++++.+ | +.. +..+..++...|+.++|+..++++... +...+..+..++...|..++|++.++..
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 77777777777743 2 334 666677777777777777777776532 4445566666777777777777777655
Q ss_pred HhCCCCCCH------HHHHHHHHHHH-----ccCCh---HHHHHHHHHHHHc-CCCCChh-hH----HHHHHHHHhcCCH
Q 042265 235 MDLDIKPDN------IALVSALSACA-----RLGEL---EQGKNIHRYIELN-QIRVDSF-LS----TGLVDFYAKCGYI 294 (490)
Q Consensus 235 ~~~~~~p~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~ 294 (490)
.. .|+. .....++.... ..+++ ++|...++.+.+. ...|+.. .+ ...+.++...|++
T Consensus 177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 43 2221 01111222221 11223 5677777777654 1122221 11 1112334566788
Q ss_pred HHHHHHHhccCCCC---ee-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 295 NTAIEIFESSQEKN---LF-TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP---DGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 295 ~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
++|+..|+++.+.+ +. ....+..+|...|++++|+..|+++.+..... .......+..++...|++++|.+++
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 88888888877532 11 22224667788888888888888876543211 1234555666677888888888888
Q ss_pred HHhHHhhCCC------------CC---chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 042265 368 DEMESVYGVS------------KE---LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 368 ~~~~~~~~~~------------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 430 (490)
+.+.+. .+ |+ ...+..+...+...|++++|+++++++. ..| +...+..++..+...|++++
T Consensus 334 ~~~~~~--~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~ 411 (765)
T PRK10049 334 AHTINN--SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRA 411 (765)
T ss_pred HHHhhc--CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 887763 22 22 1234456677778888888888888754 334 77788888888888888888
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 431 AEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 431 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|++.++++++.+|++...+..++..+...|++++|..+++++.+.
T Consensus 412 A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 412 AENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 888888888888888888888888888888888888888887654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.5e-19 Score=179.02 Aligned_cols=392 Identities=13% Similarity=0.022 Sum_probs=301.0
Q ss_pred CCCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPY---PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTI 133 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 133 (490)
..|+.++|++++.+..+ .+...+..+...+...|++++|.++|++..+.. +.+...+..+...+...|++++|...
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 67999999999988653 344468999999999999999999999988753 34455677788888999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCee-
Q 042265 134 HSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAV- 209 (490)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 209 (490)
++++.+.. +.+.. +..+..++...|+.++|+..++++.+. +...+..+...+...+..++|++.++.... ++.
T Consensus 106 l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~ 182 (765)
T PRK10049 106 AKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAE 182 (765)
T ss_pred HHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH
Confidence 99999874 66677 888999999999999999999999553 445667788888899999999999998775 211
Q ss_pred -------hHHHHHHHHHhc-----CCh---hHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHccCChHHHHHHHHH
Q 042265 210 -------SWGTLVAGYAQS-----DQC---EEAIQLFCNMMDL-DIKPDNI-AL----VSALSACARLGELEQGKNIHRY 268 (490)
Q Consensus 210 -------~~~~l~~~~~~~-----g~~---~~A~~~~~~m~~~-~~~p~~~-~~----~~l~~~~~~~~~~~~a~~~~~~ 268 (490)
....+++..... +++ ++|++.++.+.+. ...|+.. .+ ...+..+...|+.++|...|+.
T Consensus 183 ~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ 262 (765)
T PRK10049 183 KRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQR 262 (765)
T ss_pred HHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222233333222 234 7788899888864 2223221 11 1113445677999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCe-------ehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-
Q 042265 269 IELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNL-------FTWNAMLVGLAMHGLGRLSLVYFSRMIEARI- 340 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~- 340 (490)
+.+.+.+........+..+|...|++++|+..|+++.+.++ .....+..++...|++++|...++.+.....
T Consensus 263 ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~ 342 (765)
T PRK10049 263 LKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPP 342 (765)
T ss_pred hhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCc
Confidence 99876321122233367789999999999999998765322 2355566688999999999999999987521
Q ss_pred ----------CCCH---HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 341 ----------KPDG---VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 341 ----------~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
.|+. ..+..+...+...|+.++|++.++++.. ..|.+...+..+...+...|++++|++.+++..
T Consensus 343 ~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al 420 (765)
T PRK10049 343 FLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAE 420 (765)
T ss_pred eEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2332 2445667778899999999999999988 567778889999999999999999999999865
Q ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 408 -MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 408 -~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
..| +...+...+..+...|++++|+..++++++..|+++. ...+-..
T Consensus 421 ~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~-~~~~~~~ 469 (765)
T PRK10049 421 VLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG-VQRLARA 469 (765)
T ss_pred hhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH
Confidence 445 6778888888899999999999999999999999983 3334333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-18 Score=174.48 Aligned_cols=441 Identities=11% Similarity=0.019 Sum_probs=323.2
Q ss_pred HHHhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhh-----ccCCcCCCCCCCCCChhHHHHhhccCC--CC--Ccc
Q 042265 7 IKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAIT-----TFKPISSASSPTTDPLSYALSIFNNIP--YP--STF 77 (490)
Q Consensus 7 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~--~~~ 77 (490)
|...+....+-.+++.+.+.. . .++.++..+.... . +..+.+.|.+.++ .. .| +..
T Consensus 118 La~i~~~~kA~~~ye~l~~~~-P---~n~~~~~~la~~~~~~~~l----------~y~q~eqAl~AL~-lr~~~~~~~~~ 182 (987)
T PRK09782 118 LAAIPVEVKSVTTVEELLAQQ-K---ACDAVPTLRCRSEVGQNAL----------RLAQLPVARAQLN-DATFAASPEGK 182 (987)
T ss_pred HHHhccChhHHHHHHHHHHhC-C---CChhHHHHHHHHhhccchh----------hhhhHHHHHHHHH-HhhhCCCCCcH
Confidence 333355555567777777765 2 4555666555552 1 1345555555555 32 23 333
Q ss_pred cHHH-HHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhc-cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 042265 78 SYNT-IIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQ-LCSHSLAQTIHSQVLKLGFICDVFVLNSLMHV 155 (490)
Q Consensus 78 ~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 155 (490)
+... +.+.|.+.|++++|+++++++.+.+ +.+..-...|..++.. .++ +.+..+++. .+..+...+..+...
T Consensus 183 vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~ 256 (987)
T PRK09782 183 TLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATA 256 (987)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHH
Confidence 3344 4889999999999999999999986 3344446667777777 366 777777543 344688899999999
Q ss_pred HHhcCChHHHHHHHHhccc-----CCchhHHHH------------------------------HHH--------------
Q 042265 156 YCVFHRLRDAQELFDEILY-----RDVVSCNTL------------------------------IDG-------------- 186 (490)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------------------------------~~~-------------- 186 (490)
|.+.|+.++|.+.++++.. |+..+|.-+ +..
T Consensus 257 yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (987)
T PRK09782 257 LAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL 336 (987)
T ss_pred HHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 9999999999999999822 111111100 000
Q ss_pred -------------------------------------------------HHhcCCHHHHHHHHhhCCC-C----------
Q 042265 187 -------------------------------------------------YVKAGDLAHARQLFDRMPF-R---------- 206 (490)
Q Consensus 187 -------------------------------------------------~~~~~~~~~a~~~~~~~~~-~---------- 206 (490)
..+.|+.++|.++|+.... +
T Consensus 337 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 416 (987)
T PRK09782 337 ATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLM 416 (987)
T ss_pred cCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHH
Confidence 1245667777766655431 0
Q ss_pred -----------------------------------------------------------CeehHHHHHHHHHhcCChhHH
Q 042265 207 -----------------------------------------------------------DAVSWGTLVAGYAQSDQCEEA 227 (490)
Q Consensus 207 -----------------------------------------------------------~~~~~~~l~~~~~~~g~~~~A 227 (490)
+...|..+..++.. +++++|
T Consensus 417 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 417 ARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred HHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 11223444444444 677788
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 042265 228 IQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK 307 (490)
Q Consensus 228 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 307 (490)
...+.+.... .|+......+...+...|++++|...++++... +|+...+..+..++.+.|+.++|...+++..+.
T Consensus 496 i~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 496 LYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8877777764 466655555566667899999999999997655 455555677788899999999999999988765
Q ss_pred CeehHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHH
Q 042265 308 NLFTWNAML---VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYG 384 (490)
Q Consensus 308 ~~~~~~~l~---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (490)
++...+... ......|++++|...+++..+. .|+...+..+...+.+.|++++|...+++... ..+.+...+.
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~ 647 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQA 647 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 444333333 3334559999999999999875 56788899999999999999999999999998 5566778888
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 042265 385 CMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRW 462 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (490)
.+...+...|++++|+..+++.. ..| ++..+..+..++...|++++|+..++++++..|++..+....++...+..++
T Consensus 648 nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~ 727 (987)
T PRK09782 648 ALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNF 727 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHH
Confidence 99999999999999999999854 445 8889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 042265 463 EDVVKIRRSLDAGKI 477 (490)
Q Consensus 463 ~~A~~~~~~m~~~~~ 477 (490)
+.|.+-+++....++
T Consensus 728 ~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 728 RRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHHHhhcCc
Confidence 999998887655443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-18 Score=174.41 Aligned_cols=391 Identities=12% Similarity=-0.020 Sum_probs=288.9
Q ss_pred HHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHH
Q 042265 38 TTILYAITTFKPISSASSPTTDPLSYALSIFNNIP--YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFP 115 (490)
Q Consensus 38 ~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 115 (490)
+..+...|. +.|++++|++.|++.. .|+...|..+..++.+.|++++|++.++...+.. +.+...|.
T Consensus 130 ~k~~G~~~~----------~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~ 198 (615)
T TIGR00990 130 LKEKGNKAY----------RNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALN 198 (615)
T ss_pred HHHHHHHHH----------HcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 345667777 7999999999999864 4777889999999999999999999999998864 33455788
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc---------------------
Q 042265 116 FLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY--------------------- 174 (490)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------------- 174 (490)
.+..++...|++++|..-+......+ +.+......++..+........+...++.-..
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRP 277 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcch
Confidence 89999999999999998887665543 22211111111111111111222222211100
Q ss_pred --------CCch---hHHHHHHH---HHhcCCHHHHHHHHhhCCCC------CeehHHHHHHHHHhcCChhHHHHHHHHH
Q 042265 175 --------RDVV---SCNTLIDG---YVKAGDLAHARQLFDRMPFR------DAVSWGTLVAGYAQSDQCEEAIQLFCNM 234 (490)
Q Consensus 175 --------~~~~---~~~~l~~~---~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 234 (490)
.+.. .+..+... ....+++++|.+.|+..... +...|+.+...+...|++++|+..|++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0000 11111111 12246899999999886532 4457888899999999999999999999
Q ss_pred HhCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---Cee
Q 042265 235 MDLDIKPD-NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLF 310 (490)
Q Consensus 235 ~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~ 310 (490)
++. .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+. +..
T Consensus 358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 885 344 5578888899999999999999999998875 667889999999999999999999999988753 456
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCch-------HH
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELK-------HY 383 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~ 383 (490)
.+..+...+.+.|++++|+..+++..... +.+...+..+...+...|++++|...|++.... . +.+.. .+
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~-p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-E-KETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-C-CccccccccHHHHH
Confidence 67788889999999999999999998753 335678888899999999999999999998873 2 11111 11
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+.....+...|++++|.+++++.. ..| +...+..++..+.+.|++++|+..++++.++.+...
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 222233445799999999998853 344 666788999999999999999999999999877544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-18 Score=174.18 Aligned_cols=329 Identities=10% Similarity=-0.020 Sum_probs=228.8
Q ss_pred cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCC
Q 042265 113 SFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGD 192 (490)
Q Consensus 113 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (490)
....++..+.+.|+++.|..+++..+... +-+...+..++.+....|++++|...++++...++
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P--------------- 107 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV--------------- 107 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC---------------
Confidence 34555666677777777777777777664 44455555566666667777777777776643221
Q ss_pred HHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 042265 193 LAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELN 272 (490)
Q Consensus 193 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|+.++|...++.+...
T Consensus 108 -------------~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 108 -------------CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred -------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 123344455555555666666666666655532 223344555555666666666666666655444
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 042265 273 QIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTIL 348 (490)
Q Consensus 273 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 348 (490)
. +.+...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..++++.... +.+...+.
T Consensus 174 ~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 V-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred C-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 3 2222222222 2355566666666666655432 12233444567788899999999999988764 23566777
Q ss_pred HHHHHhhccCcHHH----HHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 042265 349 GALVGCSHAGLVDE----ARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGC 422 (490)
Q Consensus 349 ~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 422 (490)
.+...+...|++++ |...++++.+ ..+.+...+..+...+...|++++|...+++.. ..| +...+..+...+
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 78888999999885 8999999987 455677889999999999999999999999865 344 677888899999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.+.|++++|+..++++.+..|++...+..++.++...|++++|...|++..+..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999987667777889999999999999999987653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-19 Score=169.82 Aligned_cols=427 Identities=11% Similarity=0.024 Sum_probs=332.0
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCC------CcccHHHHHHHHHcCCCchhHHHHHHHhhhCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYP------STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVS 106 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 106 (490)
.+|.+.+.|...|. -.|+++.++.+...+... -..+|-.+.+++-..|++++|...|-+..+..
T Consensus 268 ~nP~~l~~LAn~fy----------fK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 268 ENPVALNHLANHFY----------FKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred CCcHHHHHHHHHHh----------hcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 89999999999999 669999999998766421 23457788999999999999999998888753
Q ss_pred CCCCcc--cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----ChHHHHHHHHhcccC---Cc
Q 042265 107 IPPDFY--SFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFH----RLRDAQELFDEILYR---DV 177 (490)
Q Consensus 107 ~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~ 177 (490)
||.. .+.-+...+...|+++.+...|+.+.+.. |.+..+.-.|...|...+ ..++|..++.+...+ |.
T Consensus 338 --~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 338 --NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred --CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 5554 45567888999999999999999999875 777888888888888775 567888888888665 55
Q ss_pred hhHHHHHHHHHhcCC------HHHHHHHHhh-CCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCH----
Q 042265 178 VSCNTLIDGYVKAGD------LAHARQLFDR-MPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDL---DIKPDN---- 243 (490)
Q Consensus 178 ~~~~~l~~~~~~~~~------~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~---- 243 (490)
..|-.+...+....- +..|..++.. +....+...|.+...+...|++++|...|...... ...+|.
T Consensus 415 ~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 567666666554333 2334433333 22346788999999999999999999999988764 122333
Q ss_pred --HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHH
Q 042265 244 --IALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVG 318 (490)
Q Consensus 244 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 318 (490)
.+--.+..+.-..++.+.|.+.|..+.+.. |.-+..|..++.+....++..+|...++.+.. .++..+..+...
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 233445666677889999999999999874 44455565565555556788899999988764 577888888889
Q ss_pred HHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhh------------ccCcHHHHHHHHHHhHHhhCCCCCchHHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEAR-IKPDGVTILGALVGCS------------HAGLVDEARKLFDEMESVYGVSKELKHYGC 385 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 385 (490)
+.....+..|.+-|+...+.- ..+|..+...|...|. ..+..++|.++|.++.+ ..+.|...-|.
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANG 651 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANG 651 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccc
Confidence 999999988888777665532 2357766666666443 23457788999998888 67788888899
Q ss_pred HHhhhhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCCchHHHHHHHHHhcCC
Q 042265 386 MADLLGRAGLIEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~ 461 (490)
+.-.++..|++.+|..+|.++.... ...+|..+..+|...|++-.|++.|+...+ ...+++.+...|++++.+.|+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999887442 667899999999999999999999999998 444567789999999999999
Q ss_pred hHHHHHHHHHHhcC
Q 042265 462 WEDVVKIRRSLDAG 475 (490)
Q Consensus 462 ~~~A~~~~~~m~~~ 475 (490)
+.+|.+.+......
T Consensus 732 ~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 732 LQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998777654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-17 Score=162.30 Aligned_cols=413 Identities=9% Similarity=-0.013 Sum_probs=303.7
Q ss_pred CCCChhHHHHhhccCCC--CCcc-cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCccc-HHHH--HHHHhccCCcHHH
Q 042265 57 TTDPLSYALSIFNNIPY--PSTF-SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYS-FPFL--LRACSQLCSHSLA 130 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l--l~~~~~~~~~~~a 130 (490)
+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+... +..+ ...+...|++++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 58999999999998763 4321 22378888889999999999999988 243333 3333 4577788999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHH--HhcCCHHHHHHHHhhCCCC--
Q 042265 131 QTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGY--VKAGDLAHARQLFDRMPFR-- 206 (490)
Q Consensus 131 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~-- 206 (490)
.++++++.+.. |.+...+..++..+...++.++|++.++++.+.++.....+..++ ...++..+|++.++++.+.
T Consensus 122 iely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P 200 (822)
T PRK14574 122 LALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence 99999999986 666788888899999999999999999999766544333344444 4456666699999987633
Q ss_pred -CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH------HHHHHHH-----HccCCh---HHHHHHHHHHHH
Q 042265 207 -DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIAL------VSALSAC-----ARLGEL---EQGKNIHRYIEL 271 (490)
Q Consensus 207 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~------~~l~~~~-----~~~~~~---~~a~~~~~~~~~ 271 (490)
+...+..+..++.+.|-...|.++..+-.+. +.+..... ...++.- ....++ +.|..-++.+..
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 5677888999999999999999887764322 11111111 1111110 011222 344444555544
Q ss_pred c-CC-CCChhh----HHHHHHHHHhcCCHHHHHHHHhccCCC----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-
Q 042265 272 N-QI-RVDSFL----STGLVDFYAKCGYINTAIEIFESSQEK----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI- 340 (490)
Q Consensus 272 ~-~~-~~~~~~----~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~- 340 (490)
. +. |+.... ..-.+-++...++..++++.|+.+..+ ...+-..+..+|...+++++|+.+|+.+.....
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 2 11 222222 223455778889999999999999853 334667788999999999999999999876431
Q ss_pred ----CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhC----------CCCCc---hHHHHHHhhhhhcCCHHHHHHHH
Q 042265 341 ----KPDGVTILGALVGCSHAGLVDEARKLFDEMESVYG----------VSKEL---KHYGCMADLLGRAGLIEEALEMI 403 (490)
Q Consensus 341 ----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~~---~~~~~l~~~~~~~g~~~~A~~~~ 403 (490)
.++......|.-++...+++++|..+++.+.+... -.|++ ..+..++..+.-.|++.+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 22333356788899999999999999999987311 01222 23345677788999999999999
Q ss_pred hhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 404 KKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 404 ~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+++. ..| |......+...+...|++.+|++.++.+..+.|++..+....+.++...|+|++|..+.+.+.+.
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9975 334 99999999999999999999999999998999999999999999999999999999998877654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-15 Score=151.54 Aligned_cols=422 Identities=11% Similarity=0.028 Sum_probs=316.0
Q ss_pred hchhHHHHHHHHHHHhCCCCCCCc--hhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcc-cHHHH--HHH
Q 042265 11 KTIKQIHQIHAHFLTKGLLFLSPC--HILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTF-SYNTI--IRA 85 (490)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--i~~ 85 (490)
|.++.+...+.+..+.. |+ +.++ -++.++. ..|+.++|+..+++...|+.. .+..+ ...
T Consensus 48 Gd~~~Al~~L~qaL~~~-----P~~~~av~-dll~l~~----------~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 48 GDTAPVLDYLQEESKAG-----PLQSGQVD-DWLQIAG----------WAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred CCHHHHHHHHHHHHhhC-----ccchhhHH-HHHHHHH----------HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 45566667777777765 44 3455 8888888 889999999999998766433 44444 457
Q ss_pred HHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 042265 86 HTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDA 165 (490)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 165 (490)
+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 788899999999999999874 334556777788889999999999999999876 45555665555555556777679
Q ss_pred HHHHHhccc--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-Ceeh--------HHHHHHHH-----HhcCC---hh
Q 042265 166 QELFDEILY--R-DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR-DAVS--------WGTLVAGY-----AQSDQ---CE 225 (490)
Q Consensus 166 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~l~~~~-----~~~g~---~~ 225 (490)
++.++++.+ | +...+..+..++.+.|-...|.++..+-+.- +... ...+++.- ....+ .+
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 999999954 4 5567788889999999999999998875521 1111 11111110 01122 34
Q ss_pred HHHHHHHHHHhC-CCCCCH-HHH----HHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042265 226 EAIQLFCNMMDL-DIKPDN-IAL----VSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIE 299 (490)
Q Consensus 226 ~A~~~~~~m~~~-~~~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 299 (490)
.|+.-++.+... +..|.. ..| .-.+-++...++..++++.|+.+...+.+....+...+.++|...+++++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 455566665542 222322 222 23456778899999999999999999877777789999999999999999999
Q ss_pred HHhccCCCC---------eehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHhhc
Q 042265 300 IFESSQEKN---------LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI-----------KPDG---VTILGALVGCSH 356 (490)
Q Consensus 300 ~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~ 356 (490)
+|+.+..++ ......|.-++...+++++|..+++++.+... .||+ ..+..++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999875422 22246788899999999999999999987321 1222 234445677888
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 357 AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
.|+..+|++.++++.. .-|-|......+.+.+...|.+.+|...++... ..| +..+....+..+...+++++|..+
T Consensus 429 ~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 429 LNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999987 677789999999999999999999999998754 344 777888888889999999999999
Q ss_pred HHHHHhhCCCCCchHHHHHH
Q 042265 435 AEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~ 454 (490)
.+.+.+..|+++ ....|..
T Consensus 507 ~~~l~~~~Pe~~-~~~~l~r 525 (822)
T PRK14574 507 TDDVISRSPEDI-PSQELDR 525 (822)
T ss_pred HHHHHhhCCCch-hHHHHHH
Confidence 999999999998 3334444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-15 Score=135.24 Aligned_cols=410 Identities=13% Similarity=0.050 Sum_probs=260.2
Q ss_pred hHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC----CCcccH-HHHHHHHHcCCCchhHHHHHHHhhhCCCCCC
Q 042265 36 ILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY----PSTFSY-NTIIRAHTLFSSPLNAVVLFSQMRTVSIPPD 110 (490)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 110 (490)
.++..|.+.|. -..-..+|+..++-+.+ ||.-.. -.+...+.+.+.+.+|++.|+-....-...+
T Consensus 202 svl~nlaqqy~----------~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsin 271 (840)
T KOG2003|consen 202 SVLFNLAQQYE----------ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSIN 271 (840)
T ss_pred HHHHHHHHHhh----------hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccc
Confidence 34455566666 56667788888876542 333222 2344567777888888888877665421222
Q ss_pred ccc----HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc------------
Q 042265 111 FYS----FPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY------------ 174 (490)
Q Consensus 111 ~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------ 174 (490)
..+ .+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++..-|+.++..+.|.+|..
T Consensus 272 k~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~ 349 (840)
T KOG2003|consen 272 KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK 349 (840)
T ss_pred hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC
Confidence 222 233333466778888888888887775 47776666666677777888888888887722
Q ss_pred ----CCchhHHH-----HHHHHHhcC--CHHHHHHHHhhCC----CCCee-------------hHHH--------HHHHH
Q 042265 175 ----RDVVSCNT-----LIDGYVKAG--DLAHARQLFDRMP----FRDAV-------------SWGT--------LVAGY 218 (490)
Q Consensus 175 ----~~~~~~~~-----l~~~~~~~~--~~~~a~~~~~~~~----~~~~~-------------~~~~--------l~~~~ 218 (490)
|+....+. .+.-+-+.+ +-++++-.--++. .|+-. .+.. -...+
T Consensus 350 ~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~ 429 (840)
T KOG2003|consen 350 EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGEL 429 (840)
T ss_pred CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHH
Confidence 11111111 111111111 1111111111111 11100 0000 11234
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC------------------------------------CHHHHHHHHHHHHccCChHHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDIKP------------------------------------DNIALVSALSACARLGELEQG 262 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~p------------------------------------~~~~~~~l~~~~~~~~~~~~a 262 (490)
.+.|+++.|+++++-+.+..-+. +....+.-.+.....|++++|
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence 55566666666555544332211 111111111222345788888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC---CCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 042265 263 KNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ---EKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR 339 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 339 (490)
.+.|++.+...-......|+ +.-.+...|++++|++.|-++. ..+..+...+...|-...++.+|++++.+....
T Consensus 510 ~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl- 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL- 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-
Confidence 88888887654222222232 3445677888999988887654 356667777778888888999999988776553
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC-CCCCCHHHHHHH
Q 042265 340 IKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM-PMGGDVFVWSGL 418 (490)
Q Consensus 340 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l 418 (490)
++.|+..+..|...|-+.|+-.+|.+.+-.--+ -++.+..+...|..-|....-+++|+.+|++. ...|+..-|..+
T Consensus 588 ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlm 665 (840)
T KOG2003|consen 588 IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLM 665 (840)
T ss_pred CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 455677888888899999999999887765544 56778888888988898989999999999885 367899999888
Q ss_pred HHHH-HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 419 LGGC-RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 419 ~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
+..| .+.|++++|.++++...+..|.+...+..|.+.+...|.
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 8775 568999999999999999999999999999988887775
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-14 Score=126.20 Aligned_cols=397 Identities=16% Similarity=0.162 Sum_probs=244.9
Q ss_pred HhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccC-------------------CcCCCCCCCCCChhHHHHhhc
Q 042265 9 RCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFK-------------------PISSASSPTTDPLSYALSIFN 69 (490)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~~~~~~g~~~~A~~~~~ 69 (490)
..+-+++.--+|+.|...| .+ .++.+--.|+.+.++- +--|.++=|.|.+.+ ++-
T Consensus 127 S~~EvKDs~ilY~~m~~e~-~~--vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd---L~~ 200 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSEN-VD--VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD---LLF 200 (625)
T ss_pred hhcccchhHHHHHHHHhcC-CC--CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH---HHH
Confidence 3455666778999999988 66 7777666665544311 012334444454444 333
Q ss_pred cCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHH
Q 042265 70 NIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVL 149 (490)
Q Consensus 70 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 149 (490)
+..++...+|..+|.++|+--..+.|.++|++-.....+.+..+||.+|.+-+-.. ..+++.+|....+.||..|+
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhH
Confidence 33445667888888888888888888888888887777888888888887754432 27788888888888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeehHHHHHHHHHhcCChh
Q 042265 150 NSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMP----FRDAVSWGTLVAGYAQSDQCE 225 (490)
Q Consensus 150 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~ 225 (490)
|+++++..+.|+++.|.+.+ .+++.+|+ +|...+|..+|..+.+.++..
T Consensus 277 NalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred HHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 88888888888877665432 22222222 445566666666666666654
Q ss_pred H-HHHHHHHHHhC----CC---CC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCC---hhhHHHHHHHHH
Q 042265 226 E-AIQLFCNMMDL----DI---KP-DNIALVSALSACARLGELEQGKNIHRYIELN----QIRVD---SFLSTGLVDFYA 289 (490)
Q Consensus 226 ~-A~~~~~~m~~~----~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~ 289 (490)
+ |..++.+.... -. .| |...|...+..|.+..+.+-|.++...+... -+.|+ ...|..+..+.+
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic 409 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC 409 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH
Confidence 3 45555555442 12 23 3446677788888888888888877665543 12232 223455666777
Q ss_pred hcCCHHHHHHHHhccCC----CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC-c---H-
Q 042265 290 KCGYINTAIEIFESSQE----KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAG-L---V- 360 (490)
Q Consensus 290 ~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~---~- 360 (490)
.....+.-...|+.+.. |+..+...++++....|.++-.-++|.+++..|..-+.....-++..+++.. . .
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChH
Confidence 77777778888887764 5666777777777778888888888888887765545444444444444433 1 1
Q ss_pred ----HH-----HHHHHHHhHH----hhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-------CCHHHHHHHHH
Q 042265 361 ----DE-----ARKLFDEMES----VYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-------GDVFVWSGLLG 420 (490)
Q Consensus 361 ----~~-----a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~l~~ 420 (490)
.. |..+++.... .....-.....+.+...+.+.|+.++|.++|.-+..+ |.....-.++.
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 00 1111111111 0012233344566666677777777777776654221 12222234444
Q ss_pred HHHhcCCHHHHHHHHHHHHhhC
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
.....++...|...++-+...+
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC
Confidence 4556666777777777765543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-13 Score=125.70 Aligned_cols=446 Identities=12% Similarity=0.043 Sum_probs=340.1
Q ss_pred HHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC--------CCCcccHHHHHHHHH
Q 042265 16 IHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP--------YPSTFSYNTIIRAHT 87 (490)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~ 87 (490)
++.++....+. ++ .++.+|..-..+=- ..|+.+.+.+++++-. .-+...|-.=...+-
T Consensus 425 AkkvLNkaRe~--ip--td~~IWitaa~LEE----------~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 425 AKKVLNKAREI--IP--TDREIWITAAKLEE----------ANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHhh--CC--CChhHHHHHHHHHH----------hcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 45555555553 44 66666665555544 6677777777765431 234555655556666
Q ss_pred cCCCchhHHHHHHHhhhCCCCC--CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 042265 88 LFSSPLNAVVLFSQMRTVSIPP--DFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDA 165 (490)
Q Consensus 88 ~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 165 (490)
..|..--+..+......-|+.- -..||..-...|.+.+.++-+..+|...++- ++.+...|......--..|..++.
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 6666666666666665555432 2346777777777888888888888887775 366677777777777777888888
Q ss_pred HHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 042265 166 QELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI 239 (490)
Q Consensus 166 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 239 (490)
..+|++.+.. ....|......+...||+..|..++...-+. +...|-.-+.......+++.|..+|.+....
T Consensus 570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 8888887443 4556777777788889999999888876532 5667888888888999999999999888764
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CeehHHHHH
Q 042265 240 KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--K-NLFTWNAML 316 (490)
Q Consensus 240 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~ 316 (490)
.|+...|.--+...--.+..++|.+++++.++.- +.-...|..+.+.+-+.++++.|.+.|..-.+ | .+-.|-.+.
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLA 726 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHH
Confidence 5677777666666667789999999998888763 45566788889999999999999999987765 3 455777777
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCH
Q 042265 317 VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLI 396 (490)
Q Consensus 317 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (490)
..--+.|++-.|..++++.+-++.. +...|...|+.-.+.|+.+.|..+..++.+ .++.+...|..-|.+..+.++-
T Consensus 727 kleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 727 KLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccc
Confidence 7778888999999999998877543 677888889998999999999999999988 6778888888888888888887
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 397 EEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 397 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
..+...+++... |+.....+...+....++++|.+.|.++++.+|++..+|..+...+.+.|.-++-.+++.+....
T Consensus 804 Tks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~- 880 (913)
T KOG0495|consen 804 TKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA- 880 (913)
T ss_pred hHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc-
Confidence 777777776653 67777788888888999999999999999999999999999999999999988888999887654
Q ss_pred CCCCCceeEE
Q 042265 477 IKKNAGCSLI 486 (490)
Q Consensus 477 ~~~~~~~~~~ 486 (490)
.|.-|..|.
T Consensus 881 -EP~hG~~W~ 889 (913)
T KOG0495|consen 881 -EPTHGELWQ 889 (913)
T ss_pred -CCCCCcHHH
Confidence 455565554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-14 Score=140.06 Aligned_cols=245 Identities=15% Similarity=0.096 Sum_probs=110.5
Q ss_pred CCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCC---chhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHH
Q 042265 57 TTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSS---PLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLA 130 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 130 (490)
+.|+.+.|+..|.+.. +.++.++-.|.-.-....+ +..++.++...-... +-|+...+.|.+.+.-.|++..+
T Consensus 211 kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v 289 (1018)
T KOG2002|consen 211 KLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERV 289 (1018)
T ss_pred hccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHH
Confidence 5566666655555433 2233333333222222222 233444443333321 23444455555555555566665
Q ss_pred HHHHHHHHHhCCC--CchhHHHHHHHHHHhcCChHHHHHHHHhcccCC----chhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 042265 131 QTIHSQVLKLGFI--CDVFVLNSLMHVYCVFHRLRDAQELFDEILYRD----VVSCNTLIDGYVKAGDLAHARQLFDRMP 204 (490)
Q Consensus 131 ~~~~~~~~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 204 (490)
..+...+...... .-...|-.+.++|-..|++++|...|.+..+.+ +..+--+...+.+.|+++.+...|+.+.
T Consensus 290 ~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 290 WHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence 5555555543211 112334455555555666666655555553321 2233344555555566666655555543
Q ss_pred CC---CeehHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH----HHcC
Q 042265 205 FR---DAVSWGTLVAGYAQSD----QCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYI----ELNQ 273 (490)
Q Consensus 205 ~~---~~~~~~~l~~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~ 273 (490)
+. +..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...+....- ..+..+|..+ ...+
T Consensus 370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~ 447 (1018)
T KOG2002|consen 370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKG 447 (1018)
T ss_pred HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcC
Confidence 22 3344444444444443 3344444444444332 2344444444444433222 2223333322 2333
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhcc
Q 042265 274 IRVDSFLSTGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 274 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
-++.+...|.+...+...|++++|...|+..
T Consensus 448 ~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 448 KQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred CCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 3455555555555555555555555555443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1e-14 Score=128.10 Aligned_cols=347 Identities=12% Similarity=0.069 Sum_probs=239.6
Q ss_pred CCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC----CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCC
Q 042265 32 SPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP----YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSI 107 (490)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 107 (490)
|..+.++.+||..++ |--..+.|.+++++-. +-+..+||.+|.+-. +..-.+++.+|....+
T Consensus 204 PKT~et~s~mI~Gl~----------K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLC----------KFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKM 269 (625)
T ss_pred CCCchhHHHHHHHHH----------HHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhc
Confidence 388999999999999 8999999999998765 346778888887643 2333789999999999
Q ss_pred CCCcccHHHHHHHHhccCCcHH----HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH-HHHHHHhc--------cc
Q 042265 108 PPDFYSFPFLLRACSQLCSHSL----AQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRD-AQELFDEI--------LY 174 (490)
Q Consensus 108 ~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~--------~~ 174 (490)
.||..|||+++.+.++.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++..+ .+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 9999999999999999998765 56788999999999999999999999999988755 44444444 11
Q ss_pred ---C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-----------CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 042265 175 ---R-DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR-----------DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI 239 (490)
Q Consensus 175 ---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 239 (490)
| |...|..-+..|.+..|.+-|.++-.-.... ...-|..+....+.....+.-...|+.|+-+-.
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 2 5557788888898999999998887665422 123466777888888999999999999999888
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCee---hHHHHH
Q 042265 240 KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLF---TWNAML 316 (490)
Q Consensus 240 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~l~ 316 (490)
-|+..+...++++....+.++-..+++..+...|..........++..+++..- .|+.. -+....
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAF 497 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHH
Confidence 899999999999999999999999999999888755444444444444443320 11101 011111
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHH---HHHhhhhhc
Q 042265 317 VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYG---CMADLLGRA 393 (490)
Q Consensus 317 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~ 393 (490)
.-++ ..-.+.....-.+|.+.... ....+..+-.+.+.|..++|.+++..+.+.+.-.|.....+ .+++.-.+.
T Consensus 498 ak~a-ad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 498 AKCA-ADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHH-HHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 1000 00011111122334433332 33445555555666777777777766654433334333344 344444556
Q ss_pred CCHHHHHHHHhhCC
Q 042265 394 GLIEEALEMIKKMP 407 (490)
Q Consensus 394 g~~~~A~~~~~~~~ 407 (490)
.....|..+++-+.
T Consensus 575 ~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 575 NSPSQAIEVLQLAS 588 (625)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666666553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-14 Score=136.82 Aligned_cols=311 Identities=17% Similarity=0.181 Sum_probs=188.3
Q ss_pred CChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhh---CCCCCeehHHHHHHHHHhcCChhHHHHHHHH
Q 042265 160 HRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDR---MPFRDAVSWGTLVAGYAQSDQCEEAIQLFCN 233 (490)
Q Consensus 160 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (490)
|++++|.+++.++++. ....|.+|...|-..|+.+++...+-. +.+.|...|..+.....+.|++++|.-.|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 5555555555554332 333455555555555555555444322 2223444555555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHH----HHHHHHHhcCCHHHHHHHHhccCC---
Q 042265 234 MMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLST----GLVDFYAKCGYINTAIEIFESSQE--- 306 (490)
Q Consensus 234 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~--- 306 (490)
.++.. +++...+-.-...|-+.|+...|..-|.++.....+.|..-+. ..++.+...++-+.|.+.++....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 55543 2333333344444555555555555555555443222222222 123334444444555555544332
Q ss_pred --CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCC---------------------------CCCCHHHHHHHHHHhhcc
Q 042265 307 --KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR---------------------------IKPDGVTILGALVGCSHA 357 (490)
Q Consensus 307 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---------------------------~~p~~~~~~~l~~~~~~~ 357 (490)
-+...++.++..+.+...++.|......+.... ..++...+ .+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcc
Confidence 133345555556666666666655555554411 22222221 122233444
Q ss_pred CcHHHHHHHHHHhHHhhC--CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHH
Q 042265 358 GLVDEARKLFDEMESVYG--VSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG---DVFVWSGLLGGCRIHGNVEIAE 432 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 432 (490)
...+....+..-.... . ..-+...|.-+.++|...|++.+|+++|..+...+ +...|..++.+|...|.++.|+
T Consensus 391 ~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 4444444455545443 4 34466788999999999999999999999988665 7889999999999999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 433 AAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+.|++++...|++..+...|+..+.+.|+.++|.+.+..+.
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999876
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-17 Score=147.94 Aligned_cols=258 Identities=17% Similarity=0.120 Sum_probs=113.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNI-ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC 291 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (490)
.+...+.+.|++++|++++++......+|+.. .+..+...+...++.+.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 44667778888888888886654443234443 34445556667788888888888888775 3466667777776 688
Q ss_pred CCHHHHHHHHhccCC--CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 042265 292 GYINTAIEIFESSQE--KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR-IKPDGVTILGALVGCSHAGLVDEARKLFD 368 (490)
Q Consensus 292 ~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 368 (490)
+++++|.++++..-+ +++..+..++..+...++++++..+++.+.... ..++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888876543 456677778888899999999999999977643 34567778888888999999999999999
Q ss_pred HhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 369 EMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG--GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+..+ ..|.|......++..+...|+.+++.++++..... .++..+..+..++...|++++|...++++.+..|+|+
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9998 44556788888999999999999988887765422 2667788999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 447 GVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.+...++.++...|+.++|.++.++..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-14 Score=123.72 Aligned_cols=391 Identities=13% Similarity=0.094 Sum_probs=270.9
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHH-HHHHHHhccCCcHHHHHHHHHHHHhCCCCch----hHHHHHHHHH
Q 042265 82 IIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFP-FLLRACSQLCSHSLAQTIHSQVLKLGFICDV----FVLNSLMHVY 156 (490)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~ 156 (490)
|..-|..+....+|+..|+-+.+...-|+.-... .+.+.+.+.+++.+|+++++..+..-...+. .+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 3445666677889999999988877777766543 3456677888999999999988775322222 3345555568
Q ss_pred HhcCChHHHHHHHHhccc--CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----C----------C--eehHHH-----
Q 042265 157 CVFHRLRDAQELFDEILY--RDVVSCNTLIDGYVKAGDLAHARQLFDRMPF----R----------D--AVSWGT----- 213 (490)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----------~--~~~~~~----- 213 (490)
.+.|+++.|...|+...+ |+..+-..|+-++...|+-++..+.|.+|.. + | ....+.
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 899999999999999854 5666555566667778999999999988751 1 1 111111
Q ss_pred HHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHH-------------HH--------HHHHHHHHccCChHHHHHHHHHHH
Q 042265 214 LVAGYAQSD--QCEEAIQLFCNMMDLDIKPDNI-------------AL--------VSALSACARLGELEQGKNIHRYIE 270 (490)
Q Consensus 214 l~~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~-------------~~--------~~l~~~~~~~~~~~~a~~~~~~~~ 270 (490)
.++-.-+.+ +.++++-.-.+++.--+.|+-. .+ ..-...+.+.|+++.|.++++-+.
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 111121211 1222222222222222223211 00 011234678999999999998877
Q ss_pred HcCCCCChhhHHHHHHH------------------------------------HHhcCCHHHHHHHHhccCCCCeehHHH
Q 042265 271 LNQIRVDSFLSTGLVDF------------------------------------YAKCGYINTAIEIFESSQEKNLFTWNA 314 (490)
Q Consensus 271 ~~~~~~~~~~~~~l~~~------------------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~ 314 (490)
+..-..-...-+.|... ....|++++|.+.|++....|...-.+
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ea 526 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEA 526 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHH
Confidence 65322211111111111 113578889999998888776654444
Q ss_pred HH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh
Q 042265 315 ML---VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG 391 (490)
Q Consensus 315 l~---~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (490)
|. -.+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.+... -++.|+.....|.+.|-
T Consensus 527 lfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 527 LFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhh
Confidence 43 3466789999999999877553 234667777788888889999999999998887 67889999999999999
Q ss_pred hcCCHHHHHHHH-hhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 392 RAGLIEEALEMI-KKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 392 ~~g~~~~A~~~~-~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
+.|+-..|.+.. +..+--| +..+..-|...|....-+++++.+|+++.-+.|+-......++.++.+.|+|.+|.+++
T Consensus 604 qegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred cccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999875 4455555 88888888888999999999999999999999987655556677788999999999999
Q ss_pred HHHhcC
Q 042265 470 RSLDAG 475 (490)
Q Consensus 470 ~~m~~~ 475 (490)
+...++
T Consensus 684 k~~hrk 689 (840)
T KOG2003|consen 684 KDIHRK 689 (840)
T ss_pred HHHHHh
Confidence 988654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-13 Score=119.62 Aligned_cols=386 Identities=12% Similarity=0.023 Sum_probs=260.9
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhCCCCCC-cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 042265 80 NTIIRAHTLFSSPLNAVVLFSQMRTVSIPPD-FYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCV 158 (490)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 158 (490)
-....-+.++|++++|++.|.+.++. .|| +..|.....+|...|+|+++.+--...++.+ |.-+..+..-.+++-.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQ 195 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHh
Confidence 34555678899999999999999985 688 6778888888999999999998888877754 3335567777788888
Q ss_pred cCChHHHHHHHHhcc---cCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC--------------------------Cee
Q 042265 159 FHRLRDAQELFDEIL---YRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR--------------------------DAV 209 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------~~~ 209 (490)
.|++++|+.-.--.. .-+..+...++.-..+.--...+.+-+..-..| ...
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~k 275 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDK 275 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCcc
Confidence 898888764321110 000001111111111111112222222211111 011
Q ss_pred hHHHHHHHHHh--cC---ChhHHHHHHHHHHhC-CCCC-----C------HHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 042265 210 SWGTLVAGYAQ--SD---QCEEAIQLFCNMMDL-DIKP-----D------NIALVSALSACARLGELEQGKNIHRYIELN 272 (490)
Q Consensus 210 ~~~~l~~~~~~--~g---~~~~A~~~~~~m~~~-~~~p-----~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
....+..++.. .+ .+.+|...+.+-... -..+ | ..+.......+.-.|+.-.+..-|+..++.
T Consensus 276 sDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l 355 (606)
T KOG0547|consen 276 SDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL 355 (606)
T ss_pred chhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc
Confidence 22222222111 11 233443333332110 0011 1 112222222334567888899999998887
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 042265 273 QIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILG 349 (490)
Q Consensus 273 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 349 (490)
. +.+...|..+..+|....+.++....|++..+ .|+.+|..-.+...-.+++++|..=|++.+.... -+...|..
T Consensus 356 ~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQ 433 (606)
T KOG0547|consen 356 D-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQ 433 (606)
T ss_pred C-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHH
Confidence 6 33444477778889999999999999988764 4778899989999999999999999999987532 24566777
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-------CHHHH--HHHH
Q 042265 350 ALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-------DVFVW--SGLL 419 (490)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------~~~~~--~~l~ 419 (490)
+-.+..+.+.++++...|++..+ .+|..+..|+.....+...+++++|.+.|+... ..| ++..+ ..++
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 77777789999999999999999 788889999999999999999999999998753 222 22221 1222
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 420 GGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 420 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
. +.-.+++..|+.+++++++++|....+|..|+....+.|+.++|+++|++-.
T Consensus 512 ~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 512 V-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred h-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 2234899999999999999999999999999999999999999999998753
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-12 Score=115.62 Aligned_cols=391 Identities=13% Similarity=0.066 Sum_probs=246.7
Q ss_pred CCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCCcHHHHH
Q 042265 57 TTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY-SFPFLLRACSQLCSHSLAQT 132 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~ 132 (490)
..+++..|..+|++.. ..++..|-..+..-.++.....|..+++..... -|-+. .|--.+..--..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 4677888999998764 467778888999999999999999999998864 34332 34444444456799999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc--ccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----
Q 042265 133 IHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEI--LYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---- 206 (490)
Q Consensus 133 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 206 (490)
+|+.-.+ ..|+...|.+.|+.-.+...++.|..++++. ..|++.+|--....-.+.|.+..|..+|+...+.
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 9999877 5899999999999999999999999999997 6789999998888888999999999999876532
Q ss_pred --CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC-------------------------------------------CC
Q 042265 207 --DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI-------------------------------------------KP 241 (490)
Q Consensus 207 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-------------------------------------------~p 241 (490)
+...+.+...--.++..++.|.-+|+-.++.-. +-
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 233444444444455556666555555444311 12
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChh--hHHHHHH--------HHHhcCCHHHHHHHHhccCC---CC
Q 042265 242 DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSF--LSTGLVD--------FYAKCGYINTAIEIFESSQE---KN 308 (490)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~--------~~~~~~~~~~A~~~~~~~~~---~~ 308 (490)
|-.++--.+..-...|+.+...++|+.+...- ||-.. .|...|- .-....+.+.+.++|+...+ ..
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk 399 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK 399 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc
Confidence 23333333444444455555555555544432 22110 0111110 01123444444444443332 12
Q ss_pred eehHHH----HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHH
Q 042265 309 LFTWNA----MLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYG 384 (490)
Q Consensus 309 ~~~~~~----l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (490)
..||.- ...-..++.+...|.+++...+ |.-|...+|...|..-.+.++++....+|++... -.|.+..+|.
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ 475 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWS 475 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHH
Confidence 222222 2222234556666666665544 3456666666666666666777777777777766 3444566666
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 385 CMADLLGRAGLIEEALEMIKKMPMGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
.....=...|+.+.|..+|+-....| ....|.+.|..-...|.++.|..+++++++..+... +|.+.+..-.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 66666666777777777777666666 334555555555667777777777777777666444 5655554433
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-13 Score=129.27 Aligned_cols=275 Identities=13% Similarity=0.075 Sum_probs=170.4
Q ss_pred cCCHHHHHHHHhhCCCC--Cee-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCChHHHHH
Q 042265 190 AGDLAHARQLFDRMPFR--DAV-SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALV--SALSACARLGELEQGKN 264 (490)
Q Consensus 190 ~~~~~~a~~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 264 (490)
.||++.|++.+....+. ++. .|.....+..+.|+++.|.+.+.++.+. .|+..... .....+...|++++|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555543322 122 2222233445666666666666666553 33332221 22445566666666666
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCe---e--------hHHHHHHHHHHcCChHHHHHHHH
Q 042265 265 IHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNL---F--------TWNAMLVGLAMHGLGRLSLVYFS 333 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--------~~~~l~~~~~~~~~~~~A~~~~~ 333 (490)
.++.+.+.. |-++.+...+...|.+.|++++|.+++..+.+... . +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666655 45556666666666666666666666665554211 1 22222333333444555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-C
Q 042265 334 RMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-D 411 (490)
Q Consensus 334 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~ 411 (490)
.+.+. .+.++.....+...+...|+.++|.+.+++..+. +++.... ++.+....++.+++.+..++.. ..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 55332 2346667777788888888888888888877753 3444222 2333345588888888887754 444 7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 412 VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
+..+..+...|.+.+++++|.+.|+++.+..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77788888888888999999999999988888765 677888888899999999888886643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-13 Score=117.64 Aligned_cols=327 Identities=14% Similarity=0.056 Sum_probs=250.6
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCe-ehHHHHHHHHHhc
Q 042265 143 ICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDA-VSWGTLVAGYAQS 221 (490)
Q Consensus 143 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~ 221 (490)
..|...+-.....+.+.|..+.|...|...+..-+..|.+.+....-..+.+.+..+.......+. ..=--+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 455555555555677789999999999998877666777666665555566655555544443211 1112244566666
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHH--
Q 042265 222 DQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQI--RVDSFLSTGLVDFYAKCGYINTA-- 297 (490)
Q Consensus 222 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A-- 297 (490)
.+.+++..-.+.....|.+-+...-+....+.....|+|+|+.+|+++.+... -.|..+|+.++ |.+..+..-+
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~L 318 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHH
Confidence 78888988888888888766666556666677788999999999999998841 12456777666 4443322221
Q ss_pred HHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCC
Q 042265 298 IEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVS 377 (490)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 377 (490)
-...-.+.+--+.|...+.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|.+-|+.+.+ -.|
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p 395 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INP 395 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCc
Confidence 12222334445677788888899999999999999999986422 456778888889999999999999999998 667
Q ss_pred CCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 378 KELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
.|-..|-.|.++|.-.+...-|+-.|++.. .+| |...|.+|+.+|.+.++.++|+..|+++......+..++..|+.+
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 788999999999999999999999999865 455 999999999999999999999999999999777777899999999
Q ss_pred HHhcCChHHHHHHHHHHhc
Q 042265 456 YANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~ 474 (490)
|.+.++..+|...+++-.+
T Consensus 476 ye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 9999999999999988765
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-11 Score=111.16 Aligned_cols=384 Identities=11% Similarity=0.028 Sum_probs=259.9
Q ss_pred HHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcC
Q 042265 85 AHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQV----LKLGFICDVFVLNSLMHVYCVFH 160 (490)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g 160 (490)
++++..-++.|..++++.++. ++.+...|.+-...--.+|+.+....++++- ...|+..+..-|..=...|-..|
T Consensus 415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 345555666777777777654 5556666666666556667776666665543 33566666666666666666666
Q ss_pred ChHHHHHHHHhcccC------CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHH
Q 042265 161 RLRDAQELFDEILYR------DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 161 ~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
..-.+..+....+.- -..+|..-...|.+.+.++-|..+|....+- +...|...+..--..|..+....+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666666665555322 2246777777777777777777777665432 4556666666666677778888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--CCe
Q 042265 232 CNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--KNL 309 (490)
Q Consensus 232 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~ 309 (490)
++++..- +-....+.......-..|+...|..++..+.+.. +.+...+.+-+.....+.+++.|..+|.+... +..
T Consensus 574 qkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 574 QKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTE 651 (913)
T ss_pred HHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc
Confidence 8877652 2233444455566667788888888888877775 45677777777888888888888888877654 455
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD-GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
..|.--+...--.+..++|.+++++.++. .|+ ...|..+.+.+...++++.|...|..-.+ .++..+..|-.|.+
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLak 727 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAK 727 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHH
Confidence 66666666666677788888888777664 343 34566667777777888888877777665 55666667777777
Q ss_pred hhhhcCCHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------------------
Q 042265 389 LLGRAGLIEEALEMIKKMPMG-G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED--------------------- 445 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--------------------- 445 (490)
.=.+.|.+-.|..+|++...+ | +...|...+..-.+.|+.+.|..+..++++..|.+
T Consensus 728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHH
Confidence 777778888888888775533 3 77788888888888888888888887777755543
Q ss_pred ---------CchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 446 ---------GGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 446 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+.+...++..+....+++.|.+.|.+....
T Consensus 808 DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 808 DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 335556666666777777777777766544
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-12 Score=113.46 Aligned_cols=308 Identities=14% Similarity=0.116 Sum_probs=187.3
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHH--HHHHHHhccCCcHHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFP--FLLRACSQLCSHSLAQTIH 134 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~ 134 (490)
+.|....|...|......-+..|.+-+....-..+.+.+. ... .|.+.|...+. .+..++....+.+++.+-.
T Consensus 176 ~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~----~l~-~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILS----ILV-VGLPSDMHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred hhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHH----HHH-hcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777776554333344443333222222222211 111 11222211111 2334445555777777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC------CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCe
Q 042265 135 SQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR------DVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDA 208 (490)
Q Consensus 135 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (490)
+.....|++.+...-+....+.....++++|+.+|+++.+. |..+|..++-+-.....+.--......+.+--+
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ 330 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRP 330 (559)
T ss_pred HHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCc
Confidence 77788887777777677777777788888888888888665 334565555443322222221112222222245
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFY 288 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 288 (490)
.|..++.+-|.-.++.++|...|+..++.+ +-....|+.+..-|...++...|.+-++.+++.+ |.|-..|-.|.++|
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 666677777777777777777777777654 2234466666677777777777777777777766 66777777777777
Q ss_pred HhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHH
Q 042265 289 AKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARK 365 (490)
Q Consensus 289 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 365 (490)
.-.+...-|+-+|++..+ .|...|.+|..+|.+.++.++|++.|++....|- .+...+..|...+.+.++.++|..
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHH
Confidence 777777777777776553 3666777777777777777777777777766542 255666777777777777777777
Q ss_pred HHHHhHH
Q 042265 366 LFDEMES 372 (490)
Q Consensus 366 ~~~~~~~ 372 (490)
.|++..+
T Consensus 488 ~yek~v~ 494 (559)
T KOG1155|consen 488 YYEKYVE 494 (559)
T ss_pred HHHHHHH
Confidence 7766655
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-11 Score=115.74 Aligned_cols=454 Identities=11% Similarity=0.043 Sum_probs=259.2
Q ss_pred HHHhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhcc---CCCCCcccHHHHH
Q 042265 7 IKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNN---IPYPSTFSYNTII 83 (490)
Q Consensus 7 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~li 83 (490)
+=+-|+++.+..|...++++. . .++..|-.|...|- ..|+.+++...+-. +.+.|..-|-.+.
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p---~~~~ay~tL~~IyE----------qrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-P---RNPIAYYTLGEIYE----------QRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-c---cchhhHHHHHHHHH----------HcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 334466677777777777765 2 56667777777777 67777777766532 3455666777777
Q ss_pred HHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHH----HHHHHHHhc
Q 042265 84 RAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLN----SLMHVYCVF 159 (490)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~ 159 (490)
....+.|.+++|.-+|.+..+.. +++...+--=...|-+.|+...|.+.|.++.+...+.|..-+. ..+..+...
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 77777777777777777777653 3333333333455666677777777777777654222222222 234445556
Q ss_pred CChHHHHHHHHhcccC-----CchhHHHHHHHHHhcCCHHHHHHHHhhCCC----C----------------------Ce
Q 042265 160 HRLRDAQELFDEILYR-----DVVSCNTLIDGYVKAGDLAHARQLFDRMPF----R----------------------DA 208 (490)
Q Consensus 160 g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~----------------------~~ 208 (490)
++-+.|.+.++..... +...++.++..+.+...++.|......+.. + +.
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 6667777776666431 344566667777776666666665544322 0 11
Q ss_pred ehHH----HHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHH
Q 042265 209 VSWG----TLVAGYAQSDQCEEAIQLFCNMMDLDIKP--DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLST 282 (490)
Q Consensus 209 ~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (490)
..|. -++-++...+..+....+.....+..+.| +...|.-+..++...|++..|..++..+.......+..+|-
T Consensus 374 ~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 374 LSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred CCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhH
Confidence 1111 12222333333333333444444444223 34467777778888888888888888887775555677788
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCe---ehHHHHHHHHHHcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHH
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQEKNL---FTWNAMLVGLAMHGLGRLSLVYFSRMI--------EARIKPDGVTILGAL 351 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~--------~~~~~p~~~~~~~l~ 351 (490)
.+..+|...|.++.|.+.|+.+..-++ ..--.|...+.+.|+.++|.+++..+. ..+..|+........
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~ 533 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRC 533 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHH
Confidence 888888888888888888887765333 333445556777888888888877753 222344444444445
Q ss_pred HHhhccCcHHHHHHHHHHhHHhh----C-----------------CCCCchHHHHHHhhhhhcCCHHHHHHHHhhC----
Q 042265 352 VGCSHAGLVDEARKLFDEMESVY----G-----------------VSKELKHYGCMADLLGRAGLIEEALEMIKKM---- 406 (490)
Q Consensus 352 ~~~~~~g~~~~a~~~~~~~~~~~----~-----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---- 406 (490)
..+...|+.++=..+-..|...+ - .+........++.+-.+.++......-+..-
T Consensus 534 d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~ 613 (895)
T KOG2076|consen 534 DILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFR 613 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhh
Confidence 55666676665444433333210 0 0111112222333333333322222111110
Q ss_pred --CCCC-CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCC--chHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 407 --PMGG-DV----FVWSGLLGGCRIHGNVEIAEAAAEHVMK----LKPEDG--GVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 407 --~~~~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
..++ +. ..+.-++..+.+.+++++|..+...+.+ ..++.. ..-...+.+....+++.+|...++.|.
T Consensus 614 ~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i 693 (895)
T KOG2076|consen 614 AVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVI 693 (895)
T ss_pred hhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0011 11 2344566677888999999999998888 122211 123344556668888999998888887
Q ss_pred cC
Q 042265 474 AG 475 (490)
Q Consensus 474 ~~ 475 (490)
..
T Consensus 694 ~~ 695 (895)
T KOG2076|consen 694 TQ 695 (895)
T ss_pred HH
Confidence 54
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-12 Score=121.20 Aligned_cols=276 Identities=13% Similarity=0.018 Sum_probs=194.5
Q ss_pred cCChHHHHHHHHhcccC--Cch-hHHHHHHHHHhcCCHHHHHHHHhhCCCCCee--hHH--HHHHHHHhcCChhHHHHHH
Q 042265 159 FHRLRDAQELFDEILYR--DVV-SCNTLIDGYVKAGDLAHARQLFDRMPFRDAV--SWG--TLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~l~~~~~~~g~~~~A~~~~ 231 (490)
.|++++|.+.+....+. ++. .|.....+..+.|+++.|.+.+.++.+.+.. ... .....+...|+++.|.+.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46666666666654332 122 2222233335667777777777666543222 122 2255677788888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHhcc
Q 042265 232 CNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDS-------FLSTGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 232 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
+++.+.. +-+......+...|.+.|++++|..++..+.+.+..++. .++..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 8877764 334556677777888888888888888888777543222 12233344444455667777777776
Q ss_pred CC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCch
Q 042265 305 QE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELK 381 (490)
Q Consensus 305 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 381 (490)
.+ .++.....+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+..+...+ ..+.|+.
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHH
Confidence 54 46778888899999999999999999998874 4454322 23344456999999999999998 5667777
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
.+..+...+.+.|++++|.+.|+... ..|+...+..+...+.+.|+.++|.+++++.+.+
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88899999999999999999999865 5688888889999999999999999999998773
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-13 Score=128.07 Aligned_cols=279 Identities=11% Similarity=0.036 Sum_probs=220.0
Q ss_pred CCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCChHHHHHH
Q 042265 191 GDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI--KPDNIALVSALSACARLGELEQGKNI 265 (490)
Q Consensus 191 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~ 265 (490)
-+..+|...|.+.... +......+.++|...+++++|.++|+.+.+... .-+...|.+.+..+-+ +-+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3567888888885432 345667788999999999999999999887521 1256688888776533 222333
Q ss_pred H-HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCC---eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 042265 266 H-RYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKN---LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIK 341 (490)
Q Consensus 266 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 341 (490)
+ +.+.+.. +..+.+|.++..+|.-+++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+.. .
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--D 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--C
Confidence 3 2333333 6778999999999999999999999999988654 467788878888899999999999988653 2
Q ss_pred CC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHH
Q 042265 342 PD-GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGL 418 (490)
Q Consensus 342 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l 418 (490)
|. -..|--+...|.++++++.|+-.|+++.+ --+.+......+...+.+.|+.++|+.++++.. ..| |+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 22 23444567779999999999999999987 455567777888889999999999999999854 333 66666667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 042265 419 LGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 419 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 478 (490)
+..+...+++++|...++++.+.-|++..+|..++..|.+.|+.+.|..-|.-+.+...+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 777888999999999999999999999999999999999999999999998887665433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.4e-11 Score=107.68 Aligned_cols=402 Identities=11% Similarity=0.052 Sum_probs=305.5
Q ss_pred CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 042265 74 PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLM 153 (490)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 153 (490)
-+...|-.....-..++++..|..+|+...... ..+...|...+.+-.++..+..|..+++..+..- |--...|-..+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHH
Confidence 355667666666777889999999999998754 4456667777777788999999999999998853 33345666677
Q ss_pred HHHHhcCChHHHHHHHHhc--ccCCchhHHHHHHHHHhcCCHHHHHHHHhhC--CCCCeehHHHHHHHHHhcCChhHHHH
Q 042265 154 HVYCVFHRLRDAQELFDEI--LYRDVVSCNTLIDGYVKAGDLAHARQLFDRM--PFRDAVSWGTLVAGYAQSDQCEEAIQ 229 (490)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 229 (490)
.+--..|++..|.++|++- -+|+...|.+.|+.-.+.+.++.|..++++. ..|++.+|--..+.-.+.|+...|..
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHH
Confidence 7777789999999999987 5689999999999999999999999999984 47899999999999999999999999
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHH----
Q 042265 230 LFCNMMDL-DI-KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVD--SFLSTGLVDFYAKCGYINTAIEIF---- 301 (490)
Q Consensus 230 ~~~~m~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~---- 301 (490)
+|...++. |- ..+...+.+....-.+...++.|..+|+-.++.- |.+ ...|..+...--+-|+.....+..
T Consensus 229 VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 229 VYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 99988764 11 1122334444444456778889999999888763 333 345555554444556544444332
Q ss_pred ----hccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHh---hccCcHHHHH
Q 042265 302 ----ESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGV-------TILGALVGC---SHAGLVDEAR 364 (490)
Q Consensus 302 ----~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-------~~~~l~~~~---~~~g~~~~a~ 364 (490)
+...+. |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|..+--+| ....|.+.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 333333 4456666777777889999999999999876 455321 222221122 3578899999
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhh----hcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLG----RAGLIEEALEMIKKMP-MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVM 439 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 439 (490)
++|+...+ -+|....||..+--+|+ ++.++..|.+++-... ..|-..++...|..-.+.++++....++++.+
T Consensus 387 ~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999988 56667777776655554 7789999999997754 56788899999999899999999999999999
Q ss_pred hhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCC
Q 042265 440 KLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNA 481 (490)
Q Consensus 440 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 481 (490)
+..|.+..+|...+..-...|+++.|..+|+...++..-..|
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 999999999999999999999999999999988877654444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-12 Score=124.07 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchH--HHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CH--HHHH
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKH--YGCMADLLGRAGLIEEALEMIKKMP-MGG-DV--FVWS 416 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~--~~~~ 416 (490)
+...+..+...+...|+.++|.+.+++..+. .+.+... .....-.....++.+.+.+.+++.. ..| ++ ....
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~ 339 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR 339 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence 4455555556666666666666666666652 2222210 0111111122355556666665532 333 44 5556
Q ss_pred HHHHHHHhcCCHHHHHHHHH--HHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 417 GLLGGCRIHGNVEIAEAAAE--HVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 417 ~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
++...+.+.|++++|.+.|+ .+.+..|++. .+..++..+.+.|+.++|.+++++-
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66777777777777777777 3445666544 4557777777777777777777664
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-13 Score=126.79 Aligned_cols=277 Identities=14% Similarity=0.066 Sum_probs=199.5
Q ss_pred ChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC------CeehHHHHHHHHHhcCChhHHHHHH
Q 042265 161 RLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR------DAVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 161 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
+..+|...|+.+... .......+..+|...+++++|.++|+.+... +...|.+.+-.+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 345666666664322 2234455666777777777777777766532 556677666554332 122222
Q ss_pred -HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCee
Q 042265 232 -CNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLF 310 (490)
Q Consensus 232 -~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 310 (490)
+++.+.. +-.+.+|..+.++|+-+++.+.|++.|++..+.. +-...+|+.+..-+.....+|+|...|+.....|+.
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2233322 3456688888888888888888888888887765 446777887888888888888888888888877666
Q ss_pred hHHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHH
Q 042265 311 TWNA---MLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMA 387 (490)
Q Consensus 311 ~~~~---l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 387 (490)
.||+ +...|.+.++++.|+-.|++..+-+.. +.+....+...+.+.|+.++|+++++++.. -.+.|+..--..+
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRA 564 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHH
Confidence 5554 566788999999999999988875422 556666777778889999999999999887 4555665555667
Q ss_pred hhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 388 DLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
..+...+++++|+..+++++. .| +...+..++..|.+.|+.+.|+..|.-+.+++|...
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 778888999999999998763 34 677788888889999999999999999999999755
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-12 Score=119.82 Aligned_cols=278 Identities=12% Similarity=0.001 Sum_probs=184.5
Q ss_pred hcCChHHHHHHHHhcccC--Cc-hhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCe--ehHHHHHHHHHhcCChhHHHHH
Q 042265 158 VFHRLRDAQELFDEILYR--DV-VSCNTLIDGYVKAGDLAHARQLFDRMPF--RDA--VSWGTLVAGYAQSDQCEEAIQL 230 (490)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~l~~~~~~~g~~~~A~~~ 230 (490)
..|+++.|.+.+.+..+. ++ ..+-....+..+.|+.+.|.+.+.+..+ |+. .........+...|+++.|.+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 356666666666555332 21 1223334445566666666666666432 222 2233346677777888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH---H----hcCCHHHHHHHHhc
Q 042265 231 FCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFY---A----KCGYINTAIEIFES 303 (490)
Q Consensus 231 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~~~~~~A~~~~~~ 303 (490)
++.+.+.. +-+...+..+...+...|+++++.+.+..+.+.+..+.......-..++ . .....+...+.++.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88877764 2345566777777788888888888888887776433222211111111 1 22233455555555
Q ss_pred cCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHH-HHHhhccCcHHHHHHHHHHhHHhhCCC
Q 042265 304 SQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVT--ILGA-LVGCSHAGLVDEARKLFDEMESVYGVS 377 (490)
Q Consensus 304 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~--~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~ 377 (490)
..+ .++..+..+...+...|+.++|.+.+++..+.. |+... +..+ .......++.+.+.+.++...+ ..+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p 330 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVD 330 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCC
Confidence 553 377788888899999999999999999998863 33331 1111 1222345788889999988887 444
Q ss_pred CCc--hHHHHHHhhhhhcCCHHHHHHHHhh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 378 KEL--KHYGCMADLLGRAGLIEEALEMIKK---MPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 378 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.|+ ....++...+.+.|++++|.+.|+. ....|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455 6677899999999999999999993 34578888888999999999999999999999876
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=131.05 Aligned_cols=252 Identities=16% Similarity=0.100 Sum_probs=83.4
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCH
Q 042265 118 LRACSQLCSHSLAQTIHSQVLKLG-FICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDL 193 (490)
Q Consensus 118 l~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 193 (490)
...+.+.|++++|.++++...... .+.+...|..+.......++.+.|.+.++++... ++..+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 344444455555555553322221 1223333333444444445555555555554332 12233333333 345555
Q ss_pred HHHHHHHhhCCC--CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 042265 194 AHARQLFDRMPF--RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLD-IKPDNIALVSALSACARLGELEQGKNIHRYIE 270 (490)
Q Consensus 194 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 270 (490)
++|.++++..-+ +++..+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|...+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555544321 244555566666677777777777777765432 23455566666667777777777777777777
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC---CCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 042265 271 LNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ---EKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTI 347 (490)
Q Consensus 271 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 347 (490)
+.. |.+..+...++..+...|+.+++.++++... ..|+..+..+..++...|++++|+.+|++..... +.|....
T Consensus 174 ~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~ 251 (280)
T PF13429_consen 174 ELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWL 251 (280)
T ss_dssp HH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHH
T ss_pred HcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccccc
Confidence 664 4456666667777777777666555554433 3455666666777777777777777777766542 2256666
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
..+..++...|+.++|.++.+++.+
T Consensus 252 ~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 252 LAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 6667777777777777777666544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.8e-12 Score=114.21 Aligned_cols=263 Identities=11% Similarity=0.003 Sum_probs=213.9
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
++.....-..-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+-..+++.- |..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34445555667788899999999999998874 5566666666778888898888777777777764 777889999999
Q ss_pred HHHhcCCHHHHHHHHhccCCCCe---ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHH
Q 042265 287 FYAKCGYINTAIEIFESSQEKNL---FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEA 363 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 363 (490)
-|...|+.++|++.|.+...-|. ..|-.+...|.-.|..++|+..+...-+.= +-...-+--+..-|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 99999999999999998775443 579999999999999999999998776631 11111122233447789999999
Q ss_pred HHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 364 RKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP--------MGG-DVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
.++|.++.. -.|.|+...+-+.-.....+.+.+|..+|+... +.+ -..+++.++.+|.+.+.+++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999987 567788888888888888999999999998643 111 456789999999999999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 435 AEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
+++++.+.|.++.++.+++..|...|+++.|.+.|.+...
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-11 Score=103.52 Aligned_cols=287 Identities=10% Similarity=0.021 Sum_probs=157.6
Q ss_pred CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 042265 125 CSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMP 204 (490)
Q Consensus 125 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 204 (490)
++.++|.+.|-+|.+.. +.+.++..+|.+.|-+.|..|+|+.+.+.+......|++.-..
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~l------------------- 108 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLL------------------- 108 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHH-------------------
Confidence 45566666666665533 3344455555666666666666666655554332222221111
Q ss_pred CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----hhh
Q 042265 205 FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVD----SFL 280 (490)
Q Consensus 205 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~ 280 (490)
+...|.+-|...|-+|.|+.+|..+.+.+ ..-......|+..|....+|++|+++-+++.+.+..+. ...
T Consensus 109 -----Al~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf 182 (389)
T COG2956 109 -----ALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF 182 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH
Confidence 11123333444444444544444444432 12223344444445555555555555444444432221 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 042265 281 STGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA 357 (490)
Q Consensus 281 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 357 (490)
|..|...+....+.+.|..++++..+. .+..--.+.......|+++.|++.|+...+.+..--+.+...|..+|...
T Consensus 183 yCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 183 YCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 444555555556666666666665543 23334445566777788888888888877765444456677778888888
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHH---hcCCHHHHHH
Q 042265 358 GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMI-KKMPMGGDVFVWSGLLGGCR---IHGNVEIAEA 433 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~ 433 (490)
|+.++....+.++.+. .+....-..+.+.-....-.+.|...+ +.+..+|+...+..++..-. ..|...+-..
T Consensus 263 g~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~ 339 (389)
T COG2956 263 GKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLD 339 (389)
T ss_pred CCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHH
Confidence 8888888888887764 233334444444444444445555444 55777888888888887643 2344566666
Q ss_pred HHHHHHh
Q 042265 434 AAEHVMK 440 (490)
Q Consensus 434 ~~~~~~~ 440 (490)
.++.|+.
T Consensus 340 ~lr~mvg 346 (389)
T COG2956 340 LLRDMVG 346 (389)
T ss_pred HHHHHHH
Confidence 6666665
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.9e-11 Score=113.04 Aligned_cols=428 Identities=12% Similarity=0.044 Sum_probs=265.4
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC----CCcccHHHHHHHHHcCCCch
Q 042265 18 QIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY----PSTFSYNTIIRAHTLFSSPL 93 (490)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~ 93 (490)
..+.++...| +. |+..+|.+||.-|+ ..|+++.|- +|..|.- -+...|+.++.++.+.++.+
T Consensus 11 nfla~~e~~g-i~--PnRvtyqsLiarYc----------~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~E 76 (1088)
T KOG4318|consen 11 NFLALHEISG-IL--PNRVTYQSLIARYC----------TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAE 76 (1088)
T ss_pred hHHHHHHHhc-CC--CchhhHHHHHHHHc----------ccCCCcccc-chhhhhcccccccchhHHHHHhccccccccc
Confidence 5778889999 77 99999999999999 999999998 8887763 35668999999999999888
Q ss_pred hHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHH---HHHHHHHHHH----hCCC-Cchh-------------HHHHH
Q 042265 94 NAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSL---AQTIHSQVLK----LGFI-CDVF-------------VLNSL 152 (490)
Q Consensus 94 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~----~g~~-~~~~-------------~~~~l 152 (490)
.+. .|...||..|..+|.+.||+.. .++-++.+.. .|+. |... --...
T Consensus 77 npk-----------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ 145 (1088)
T KOG4318|consen 77 NPK-----------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA 145 (1088)
T ss_pred CCC-----------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH
Confidence 766 5888999999999999998765 2222222221 2211 1111 11223
Q ss_pred HHHHHhcCChHHHHHHHHhcccC--CchhHHHHHHHHHh-cCCHHHHHHHHhhCCC-CCeehHHHHHHHHHhcCChhHHH
Q 042265 153 MHVYCVFHRLRDAQELFDEILYR--DVVSCNTLIDGYVK-AGDLAHARQLFDRMPF-RDAVSWGTLVAGYAQSDQCEEAI 228 (490)
Q Consensus 153 i~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 228 (490)
+....-.|-++.+++++..++.. +. +....++-+.. ...+++-..+-....+ +++.+|..++.+....|+.+.|.
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 33444556667777777665322 11 11112222222 2234444444444444 68889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH---------
Q 042265 229 QLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIE--------- 299 (490)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--------- 299 (490)
.++.+|.+.|++.+.+-|..++-+ .++...+..+++-|.+.|+.|+..|+...+..+.++|....+.+
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhh
Confidence 999999999988888877777655 77888888888889999999998888776655555333221110
Q ss_pred ---------------HHhc---------cCC-------CCeehHHHHHHHHHHcCCh-----------------------
Q 042265 300 ---------------IFES---------SQE-------KNLFTWNAMLVGLAMHGLG----------------------- 325 (490)
Q Consensus 300 ---------------~~~~---------~~~-------~~~~~~~~l~~~~~~~~~~----------------------- 325 (490)
.++. .++ ....+|....... .+|.-
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHH
Confidence 0000 000 0011121111111 01110
Q ss_pred ---HHHHHHHHHHHHCC-----------------------------CCCCHH----------------------------
Q 042265 326 ---RLSLVYFSRMIEAR-----------------------------IKPDGV---------------------------- 345 (490)
Q Consensus 326 ---~~A~~~~~~m~~~~-----------------------------~~p~~~---------------------------- 345 (490)
+.+.+.|.+..... ..||..
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 01112222221100 011111
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-----CHHHHHHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-----DVFVWSGLLG 420 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~ 420 (490)
.-+.++-.|+..-+..+++..-+..... -+ +..|..|++.++...+.+.|....+++.... +..-+..+..
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 1112222333333333444333333331 11 2567888888889999999999888876443 5566777888
Q ss_pred HHHhcCCHHHHHHHHHHHHh---hCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCCC
Q 042265 421 GCRIHGNVEIAEAAAEHVMK---LKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKK 479 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 479 (490)
.+.+.+....+..+++++.+ ..|.-..++..+.......|+.+.-.++.+-+...|+.-
T Consensus 537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88899999999999999887 333334456666667778888888888888887777665
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.3e-11 Score=105.11 Aligned_cols=283 Identities=16% Similarity=0.083 Sum_probs=133.8
Q ss_pred cCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CeehHHHHHHHHHhcCChhHHHHHH
Q 042265 159 FHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR----DAVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
.|++.+|++...+-.+. ....|..-..+-.+.||.+.+-.++.+..++ +...+-+..+.....|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45666666655554332 1223333334444555555555555554333 2223334444455555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeeh
Q 042265 232 CNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFT 311 (490)
Q Consensus 232 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 311 (490)
+++.+.+ +-..........+|.+.|++.....+...+.+.+.-.+...-.. ...+
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l------------------------e~~a 231 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL------------------------EQQA 231 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH------------------------HHHH
Confidence 5555443 12333444555555555555555555555555543333221000 0123
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG 391 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (490)
|+.+++-....+..+.-...|+..-.+ .+-++..-..++.-+...|+.++|.++..+..+. +..|+. ..++ ...
T Consensus 232 ~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~~-~~l 305 (400)
T COG3071 232 WEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRLI-PRL 305 (400)
T ss_pred HHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHHH-hhc
Confidence 333333333333333333344443222 2223344444555555566666666665555554 444431 1111 122
Q ss_pred hcCCHHHHHHHHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 392 RAGLIEEALEMIKKM-PMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
+-++.+.-++..++. ...| ++..+.+|...|.+++.+.+|...|+.+++..|... .|..++.++.+.|+..+|..+.
T Consensus 306 ~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r 384 (400)
T COG3071 306 RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVR 384 (400)
T ss_pred CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHH
Confidence 334444333333331 1222 445566666666666666666666666666666433 6666666666666666666666
Q ss_pred HHHh
Q 042265 470 RSLD 473 (490)
Q Consensus 470 ~~m~ 473 (490)
++..
T Consensus 385 ~e~L 388 (400)
T COG3071 385 REAL 388 (400)
T ss_pred HHHH
Confidence 6554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-11 Score=103.23 Aligned_cols=281 Identities=16% Similarity=0.138 Sum_probs=175.4
Q ss_pred HcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhC-CCCc--hhHHHHHHHHHHhcCChH
Q 042265 87 TLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLG-FICD--VFVLNSLMHVYCVFHRLR 163 (490)
Q Consensus 87 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~~~~~g~~~ 163 (490)
.-.+++++|+++|-+|.+.. +-+..+..+|.+.+-+.|..+.|+++.+.+.++. .+.+ ......|.+-|...|-+|
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34568999999999999853 3344566788899999999999999999988742 1111 223455667788888888
Q ss_pred HHHHHHHhcccCC---chhHHHHHHHHHhcCCHHHHHHHHhhCCCCCe--------ehHHHHHHHHHhcCChhHHHHHHH
Q 042265 164 DAQELFDEILYRD---VVSCNTLIDGYVKAGDLAHARQLFDRMPFRDA--------VSWGTLVAGYAQSDQCEEAIQLFC 232 (490)
Q Consensus 164 ~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~ 232 (490)
.|+++|..+.+.+ ......|+..|....+|++|+++-+++.+-+. ..|.-+...+....+.+.|..++.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 8888888886632 34556677777777777777777665443322 234445555556667777777777
Q ss_pred HHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--CCe
Q 042265 233 NMMDLDIKPDNI-ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--KNL 309 (490)
Q Consensus 233 ~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~ 309 (490)
+..+.+ |+.+ .-..+.+.....|++++|.+.++.+.+.+...-..+...|..+|...|+.++...++.++.+ +++
T Consensus 205 kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 205 KALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 766643 2222 22334455666777777777777777666555566666677777777777777766666554 233
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc---cCcHHHHHHHHHHhHH
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH---AGLVDEARKLFDEMES 372 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 372 (490)
..-..+........-.+.|...+.+-... +|+...+..++..-.. .|...+....++.|..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44444444444444444555544443332 5666666666665332 2334444555555544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-10 Score=100.93 Aligned_cols=272 Identities=11% Similarity=0.022 Sum_probs=177.5
Q ss_pred CChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHH
Q 042265 59 DPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHS 135 (490)
Q Consensus 59 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 135 (490)
|++..|+++..+-. +.....|..-.++--+.|+.+.+-..+.+..+..-.++...+.+..+.....|+.+.|..-++
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 99999999987644 233445656666777888999999999988875324444556666677788899999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCC-----------chhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 042265 136 QVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRD-----------VVSCNTLIDGYVKAGDLAHARQLFDRMP 204 (490)
Q Consensus 136 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 204 (490)
++.+.+ +-++.+.....++|.+.|++.....++.++.+.. ..+|+.+++-....++.+.-...++..+
T Consensus 178 ~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 988876 6778888888899999999999999988885542 2356666666666666666666666665
Q ss_pred CC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhH
Q 042265 205 FR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLS 281 (490)
Q Consensus 205 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 281 (490)
.. ++..-..++.-+.+.|+.++|.++..+..+.+..|+.. ..-.+.+.++...-.+..+...+.- +.++..+
T Consensus 257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~ 331 (400)
T COG3071 257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLL 331 (400)
T ss_pred HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHH
Confidence 32 56666677777777777777777777777766555411 1223345556555555555544442 3344555
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC--CCeehHHHHHHHHHHcCChHHHHHHHHHHH
Q 042265 282 TGLVDFYAKCGYINTAIEIFESSQE--KNLFTWNAMLVGLAMHGLGRLSLVYFSRMI 336 (490)
Q Consensus 282 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 336 (490)
.+|...|.+.+.|.+|...|+...+ ++..+|+.+..++.+.|++.+|.++.++..
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5566656555555555555554332 344445555555555555555555444433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-11 Score=104.77 Aligned_cols=228 Identities=12% Similarity=0.082 Sum_probs=140.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042265 212 GTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC 291 (490)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (490)
+.+.++|.+.|.+.+|.+.++..++. .|-..||..|-++|.+..++..|..++.+-.+.- |.++.......+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 55677777777777777777776664 4556677777777777777777777777766553 44444445556666666
Q ss_pred CCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH
Q 042265 292 GYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFD 368 (490)
Q Consensus 292 ~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 368 (490)
++.++|.++|+...+. ++....++...|.-.++++.|+..|+++.+.|+. ++..|..+.-+|...++++.+...|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 6666666666655432 3344444445555566666666666666666544 44555555555555666666655555
Q ss_pred HhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 042265 369 EMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV 448 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 448 (490)
+.... -..|+. -..+|..+.......|++..|.+.|+-++..+|++..+
T Consensus 383 RAlst-at~~~~------------------------------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALST-ATQPGQ------------------------------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHhh-ccCcch------------------------------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 55542 111211 33455555555666666666666666666666666666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 449 YKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
++.|+..-.+.|++++|..+++...+
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 77666666667777777666665544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.2e-11 Score=113.33 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=65.9
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCC
Q 042265 97 VLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRD 176 (490)
Q Consensus 97 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 176 (490)
.++..+...|+.|+..||.++|.-|+..|+.+.|- +|.-|.....+.+...++.++....+.++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 35556667777777777777777777777777777 7777777666777777777777777777766554 566
Q ss_pred chhHHHHHHHHHhcCCHHH
Q 042265 177 VVSCNTLIDGYVKAGDLAH 195 (490)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~ 195 (490)
..+|..|..+|...||+..
T Consensus 83 aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred hhHHHHHHHHHHhccchHH
Confidence 6777777777777777654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.4e-10 Score=99.08 Aligned_cols=380 Identities=13% Similarity=-0.029 Sum_probs=245.9
Q ss_pred CCCChhHHHHhhccCC--CCC-cccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccCCcHHHHH
Q 042265 57 TTDPLSYALSIFNNIP--YPS-TFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY-SFPFLLRACSQLCSHSLAQT 132 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~ 132 (490)
+.|++++|++.+++.. .|+ +.-|.....+|...|+|+++++--.+..+. .|+-. .+..=.+++-..|+++++..
T Consensus 127 ~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~eal~ 204 (606)
T KOG0547|consen 127 RNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEALF 204 (606)
T ss_pred hcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHHHH
Confidence 7999999999999875 466 778888999999999999999887777764 45432 33333445556666666543
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---C-----------------------chhHHHHHHH
Q 042265 133 IHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR---D-----------------------VVSCNTLIDG 186 (490)
Q Consensus 133 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~-----------------------~~~~~~l~~~ 186 (490)
=.....-.|--.|..+--.+=+.+-+.+ ..++.+-+.+=..| + ..+...+..+
T Consensus 205 D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~ 283 (606)
T KOG0547|consen 205 DVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEA 283 (606)
T ss_pred hhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHH
Confidence 2222211111111111111111111111 11122222210001 1 0111111111
Q ss_pred HH--hcC---CHHHHHHHHhhCC-----CC-----C------eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 042265 187 YV--KAG---DLAHARQLFDRMP-----FR-----D------AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIA 245 (490)
Q Consensus 187 ~~--~~~---~~~~a~~~~~~~~-----~~-----~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 245 (490)
+. ..+ .+..|.+.+.+-. .+ | ..+.......+.-.|+...|..-|+..++....++. .
T Consensus 284 l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-l 362 (606)
T KOG0547|consen 284 LEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-L 362 (606)
T ss_pred HHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-H
Confidence 11 011 2333333332211 01 1 112222223345578999999999999987544333 3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHc
Q 042265 246 LVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMH 322 (490)
Q Consensus 246 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 322 (490)
|.-+...|....+.++..+.|....+.+ +.++.+|.--.+++.-.++++.|..-|++...- +...|-.+..+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 7778888999999999999999999987 778888988889999999999999999988764 444555566666688
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh----CCCCCc--hHHHHHHhhhhhcCCH
Q 042265 323 GLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVY----GVSKEL--KHYGCMADLLGRAGLI 396 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~--~~~~~l~~~~~~~g~~ 396 (490)
+++++++..|++.+++ ++..+..|+...+.+..++++++|.+.|+.....- ++..++ .+-..++..- =.+++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhH
Confidence 9999999999999886 45567889999999999999999999999988631 111122 2222222222 33899
Q ss_pred HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042265 397 EEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 397 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 443 (490)
..|..++++.. ..| ....+..|...-.+.|+.++|+++|++...+-.
T Consensus 520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99999998865 344 677899999999999999999999999887443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-11 Score=112.56 Aligned_cols=163 Identities=21% Similarity=0.167 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhC--CCCC--
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIE-----ARI-KPDG-VTILGALVGCSHAGLVDEARKLFDEMESVYG--VSKE-- 379 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~-- 379 (490)
+++.|..+|.+.|++++|...+++..+ .|. .|.. ..++.+...|...+++++|..+++...+.+. ..++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 444455555555555555555544322 121 1222 2355566678888999999988888766533 2222
Q ss_pred --chHHHHHHhhhhhcCCHHHHHHHHhhCCC-------C--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCC
Q 042265 380 --LKHYGCMADLLGRAGLIEEALEMIKKMPM-------G--G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK----LKP 443 (490)
Q Consensus 380 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p 443 (490)
..+++.|...|...|++++|.++++++.. + + ....++.+...|.+.+++.+|.++|.+... ..|
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 35788899999999999999999987541 1 1 355778888889999999999999998876 455
Q ss_pred CCC---chHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 444 EDG---GVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 444 ~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+++ .+|..|+.+|.+.|++++|.++.+.+.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 554 467899999999999999999988775
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.6e-11 Score=104.87 Aligned_cols=197 Identities=12% Similarity=0.012 Sum_probs=145.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGC 354 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 354 (490)
...+..+...+...|++++|.+.+++..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 344555666666666666666666654432 34456666777777788888888887777653 23455666677777
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHH
Q 042265 355 SHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAE 432 (490)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~ 432 (490)
...|++++|.+.++++.+....+.....+..+...+...|++++|...+++... .| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888888876412223445666778888888999999988887542 23 5677888888899999999999
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 433 AAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999988888888888889999999999999998877543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.4e-09 Score=96.89 Aligned_cols=451 Identities=14% Similarity=0.133 Sum_probs=230.0
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHH
Q 042265 3 LNNFIKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTI 82 (490)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 82 (490)
|..++...+.....+..+......=.+. -+..+|...+.... ..|-++.+.+++++-.+-++..-+-.
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvt--qH~rIW~lyl~Fv~----------~~~lPets~rvyrRYLk~~P~~~eey 175 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVT--QHDRIWDLYLKFVE----------SHGLPETSIRVYRRYLKVAPEAREEY 175 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchH--hhccchHHHHHHHH----------hCCChHHHHHHHHHHHhcCHHHHHHH
Confidence 5556666666666666666665543222 56667777777777 77777788888877655455556677
Q ss_pred HHHHHcCCCchhHHHHHHHhhhCC------CCCCcccHHHHHHHHhccCCcHH---HHHHHHHHHHhCCCCc--hhHHHH
Q 042265 83 IRAHTLFSSPLNAVVLFSQMRTVS------IPPDFYSFPFLLRACSQLCSHSL---AQTIHSQVLKLGFICD--VFVLNS 151 (490)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~g~~~~--~~~~~~ 151 (490)
|..+++.+++++|-+.+....... .+.+...|.-+-...++..+.-. ...+++.+... -+| ...|+.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 788888888888888777765331 12333345555544444332221 22233333222 233 345778
Q ss_pred HHHHHHhcCChHHHHHHHHhcccC--CchhHHHHHHHHHhc----------------C------CHHHHHHHHhhCCCC-
Q 042265 152 LMHVYCVFHRLRDAQELFDEILYR--DVVSCNTLIDGYVKA----------------G------DLAHARQLFDRMPFR- 206 (490)
Q Consensus 152 li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~- 206 (490)
|.+-|.+.|.+++|..++++.... .+..|+.+.++|+.- + +++-...-|+.+...
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr 333 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRR 333 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhcc
Confidence 888888888888888888776443 333333333333210 1 122222223332211
Q ss_pred --------------CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHccCChHHHHHHH
Q 042265 207 --------------DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD------NIALVSALSACARLGELEQGKNIH 266 (490)
Q Consensus 207 --------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~ 266 (490)
++..|..-+ -...|+..+-...|.++++. +.|. ...|..+...|-..|+++.|..+|
T Consensus 334 ~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvif 410 (835)
T KOG2047|consen 334 PLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIF 410 (835)
T ss_pred chHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHH
Confidence 112222211 12345556666666666543 1221 124555666666677777777777
Q ss_pred HHHHHcCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHhccCC-C--------------------CeehHHHHHHHHHHc
Q 042265 267 RYIELNQIRVD---SFLSTGLVDFYAKCGYINTAIEIFESSQE-K--------------------NLFTWNAMLVGLAMH 322 (490)
Q Consensus 267 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------------------~~~~~~~l~~~~~~~ 322 (490)
++..+...+.- ..+|..-..+-.+..+++.|+++.+.... | +...|...+...-..
T Consensus 411 eka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~ 490 (835)
T KOG2047|consen 411 EKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL 490 (835)
T ss_pred HHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh
Confidence 76666543322 34555555666666666666666655431 0 112344444443444
Q ss_pred CChHHHHHHHHHHHHCCC----------------------------------CCCH-HHHHHHHHHhh---ccCcHHHHH
Q 042265 323 GLGRLSLVYFSRMIEARI----------------------------------KPDG-VTILGALVGCS---HAGLVDEAR 364 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~----------------------------------~p~~-~~~~~l~~~~~---~~g~~~~a~ 364 (490)
|-++....+|+++.+..+ .|+. ..|+..+.-+. ....++.|.
T Consensus 491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 444444444444443222 1222 12232222222 123567777
Q ss_pred HHHHHhHHhhCCCCCchH--HHHHHhhhhhcCCHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042265 365 KLFDEMESVYGVSKELKH--YGCMADLLGRAGLIEEALEMIKKMPMGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHV 438 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 438 (490)
.+|++..+ +.+|...- |-.....=.+.|-...|+.++++....- -...|+..|.-....=-...-..+|+++
T Consensus 571 dLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 571 DLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 77777776 55554321 1112222224466666777776654322 2234444444333322233445566666
Q ss_pred HhhCCCCCc--hHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 439 MKLKPEDGG--VYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 439 ~~~~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
++.-|++.. .....+..-.+.|..+.|..++.--
T Consensus 649 Ie~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 649 IESLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 665554331 2223344455666666666666533
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-10 Score=114.53 Aligned_cols=259 Identities=11% Similarity=-0.012 Sum_probs=186.3
Q ss_pred CeehHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH---------ccCChHHHHHHHHHHHH
Q 042265 207 DAVSWGTLVAGYAQ-----SDQCEEAIQLFCNMMDLDIKPD-NIALVSALSACA---------RLGELEQGKNIHRYIEL 271 (490)
Q Consensus 207 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 271 (490)
+...|...+++... .+++++|...|++.++. .|+ ...+..+..++. ..++.++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45556566655322 23467899999999875 454 445555555443 23457899999999998
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 042265 272 NQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--K-NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTIL 348 (490)
Q Consensus 272 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 348 (490)
.. +.+...+..+..++...|++++|...|++..+ | +...+..+...+...|++++|+..+++..+....+ ...+.
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~ 410 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGI 410 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHH
Confidence 86 67788888999999999999999999998775 3 45578888899999999999999999998864332 22233
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcC
Q 042265 349 GALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G-DVFVWSGLLGGCRIHG 426 (490)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~ 426 (490)
.++..+...|++++|...++++... ..+.++..+..+..++...|++++|...++++... | +....+.+...|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 3444566689999999999998873 22334555777888899999999999999986543 3 4445555666677777
Q ss_pred CHHHHHHHHHHHHh---hCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 427 NVEIAEAAAEHVMK---LKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 427 ~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+.|...++++.+ ..|.++ ..+...|.-.|+-+.+..+ +++.+.+
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 478888888777 444444 2255566667777777666 7777654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-09 Score=96.16 Aligned_cols=410 Identities=10% Similarity=0.016 Sum_probs=280.9
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhcc--CCCCCcccHHHHHHHHHcCCCchhHHHHHH----HhhhC-
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNN--IPYPSTFSYNTIIRAHTLFSSPLNAVVLFS----QMRTV- 105 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~- 105 (490)
.+|.-.--+.++|. -.|+.+.|..+... +...|..+.......+.+..+++.|..++. .+...
T Consensus 47 ~dp~d~~~~aq~l~----------~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~ 116 (611)
T KOG1173|consen 47 NDPADIYWLAQVLY----------LGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFS 116 (611)
T ss_pred CChHHHHHHHHHHH----------hhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchh
Confidence 44444444566666 56888888887764 457888888889999999999999999988 22111
Q ss_pred --------CCCCCccc----HHHHHHH-------HhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-------
Q 042265 106 --------SIPPDFYS----FPFLLRA-------CSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVF------- 159 (490)
Q Consensus 106 --------~~~p~~~~----~~~ll~~-------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~------- 159 (490)
-+.+|..- -+.-... +....++++|...|.+.+...+ .+.+.+..++....-.
T Consensus 117 yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~-~c~Ea~~~lvs~~mlt~~Ee~~l 195 (611)
T KOG1173|consen 117 YYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADA-KCFEAFEKLVSAHMLTAQEEFEL 195 (611)
T ss_pred hcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcch-hhHHHHHHHHHHHhcchhHHHHH
Confidence 01111111 1111122 2233466777777776655431 1222222222221111
Q ss_pred ----------C-ChHHHHHHHHhc--------------------ccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC--
Q 042265 160 ----------H-RLRDAQELFDEI--------------------LYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR-- 206 (490)
Q Consensus 160 ----------g-~~~~A~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 206 (490)
+ +.+.-..+|+-. .+.++.....-..-+...+++.+..++++.+.+.
T Consensus 196 l~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp 275 (611)
T KOG1173|consen 196 LESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP 275 (611)
T ss_pred HhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC
Confidence 1 111112222211 0012233334445567789999999999887655
Q ss_pred -CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 042265 207 -DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLV 285 (490)
Q Consensus 207 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 285 (490)
....+-.-|.++...|+..+-..+=.++++.- +-...+|-.+.--|...|+.++|.++|.+..... +.-...|..+.
T Consensus 276 fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fg 353 (611)
T KOG1173|consen 276 FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFG 353 (611)
T ss_pred CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHh
Confidence 45566677778999999988888888888763 4466789999888888999999999999988765 44466788999
Q ss_pred HHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 042265 286 DFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDE 362 (490)
Q Consensus 286 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 362 (490)
..|.-.|.-++|+..+....+ ..-..+--+.--|.+.++...|.++|.+.... .+.|+..++-+.-.....+.+.+
T Consensus 354 hsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~ 432 (611)
T KOG1173|consen 354 HSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPE 432 (611)
T ss_pred HHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHH
Confidence 999999999999988876543 12222333445577899999999999988764 23356667776666667899999
Q ss_pred HHHHHHHhHHhh-CC---C-CCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 042265 363 ARKLFDEMESVY-GV---S-KELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAA 435 (490)
Q Consensus 363 a~~~~~~~~~~~-~~---~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 435 (490)
|..+|+.....- .. . --..+++.|..+|.+.+++++|+..+++.. ..| +..++.+++-.|...|+++.|++.|
T Consensus 433 A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~f 512 (611)
T KOG1173|consen 433 ALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHF 512 (611)
T ss_pred HHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence 999999887320 01 1 133467889999999999999999999854 334 9999999999999999999999999
Q ss_pred HHHHhhCCCCCchHHHHHHHH
Q 042265 436 EHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 436 ~~~~~~~p~~~~~~~~l~~~~ 456 (490)
.+++-+.|++..+-..|..+.
T Consensus 513 hKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 513 HKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHhcCCccHHHHHHHHHHH
Confidence 999999999975555555444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-08 Score=94.74 Aligned_cols=401 Identities=13% Similarity=0.051 Sum_probs=234.1
Q ss_pred CCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 042265 57 TTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTI 133 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 133 (490)
+.|++++|.+....+. +.+...+.+=+-++.+.++|++|+.+.+.-... ..+...+.-=..+..+.+..++|...
T Consensus 24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHH
Confidence 7899999999988764 456667777788899999999999665543211 11111111123344577899999988
Q ss_pred HHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHH-HHhcCCHHHHHHHHhhCCCCCeehH
Q 042265 134 HSQVLKLGFIC-DVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDG-YVKAGDLAHARQLFDRMPFRDAVSW 211 (490)
Q Consensus 134 ~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (490)
++ |..+ +..+...-...+.+.|++++|..+|+.+.+.+...+...+.+ +...+---.+. +.+........+|
T Consensus 102 ~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 102 LK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSY 175 (652)
T ss_pred Hh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchH
Confidence 87 3333 344666777888999999999999999976655544443332 11111111111 2333332222233
Q ss_pred H---HHHHHHHhcCChhHHHHHHHHHHhC--------CCC-----CCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 042265 212 G---TLVAGYAQSDQCEEAIQLFCNMMDL--------DIK-----PDNI-ALVSALSACARLGELEQGKNIHRYIELNQI 274 (490)
Q Consensus 212 ~---~l~~~~~~~g~~~~A~~~~~~m~~~--------~~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 274 (490)
. .....+...|++.+|+++++...+. ... -+.. .-..+.-++...|+.++|..++....+..
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~- 254 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN- 254 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-
Confidence 3 3344556667777777777766221 000 0001 11223344556677777777777766654
Q ss_pred CCChhhH----HHHHHH---------------------------------------------HHhcCCHHHHHHHHhccC
Q 042265 275 RVDSFLS----TGLVDF---------------------------------------------YAKCGYINTAIEIFESSQ 305 (490)
Q Consensus 275 ~~~~~~~----~~l~~~---------------------------------------------~~~~~~~~~A~~~~~~~~ 305 (490)
++|.... |.|+.+ ..-.+..+.+.++.....
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 3332111 111110 001122233333333333
Q ss_pred CCC-eehHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHH--------HhHHhh
Q 042265 306 EKN-LFTWNAMLVGLA--MHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFD--------EMESVY 374 (490)
Q Consensus 306 ~~~-~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~ 374 (490)
... ...+..++..+. +...+..+.+++...-+....-........++.....|+++.|.+++. .+.+.
T Consensus 335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~- 413 (652)
T KOG2376|consen 335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA- 413 (652)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-
Confidence 222 233444444332 223466777777766654332234455556667788999999999999 44432
Q ss_pred CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042265 375 GVSKELKHYGCMADLLGRAGLIEEALEMIKKM--------PMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 445 (490)
+.. +.+...+...+.+.++.+.|..++.+. ...+ -..++..++..-.+.|+-++|..+++++.+.+|++
T Consensus 414 ~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d 491 (652)
T KOG2376|consen 414 KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPND 491 (652)
T ss_pred ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCch
Confidence 333 445566778888887766666665543 2222 22344444555567899999999999999999999
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHH
Q 042265 446 GGVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 446 ~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
..+...++.+|++. +.+.|..+-+
T Consensus 492 ~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 492 TDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 99999999998776 4566655543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.1e-09 Score=100.27 Aligned_cols=417 Identities=13% Similarity=0.020 Sum_probs=259.0
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY---PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPP 109 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 109 (490)
-++.+|..|.-... +.|+++.+-+.|++..+ .....|+.+-..+...|....|+.+++.-....-.|
T Consensus 321 nd~ai~d~Lt~al~----------~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 321 NDAAIFDHLTFALS----------RCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred chHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 68889999988888 89999999999987653 455678888888999999999999988765543224
Q ss_pred Ccc-cHHHHHHHHh-ccCCcHHHHHHHHHHHHh--CC--CCchhHHHHHHHHHHhc-----------CChHHHHHHHHhc
Q 042265 110 DFY-SFPFLLRACS-QLCSHSLAQTIHSQVLKL--GF--ICDVFVLNSLMHVYCVF-----------HRLRDAQELFDEI 172 (490)
Q Consensus 110 ~~~-~~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~ 172 (490)
+.. .+-..-..|. +.+..+++..+-.+.... +. ......|..+.-+|... ....++++.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 333 3333333443 336667777666666552 11 12233344444344321 1134566667766
Q ss_pred ccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 042265 173 LYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMP----FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIA 245 (490)
Q Consensus 173 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 245 (490)
.+. |+.+.-.+.--|+..++++.|.+...+.. ..+...|..+...+...+++.+|+.+.+...+.- .-|...
T Consensus 471 v~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l 549 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVL 549 (799)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhh
Confidence 443 33333333444666777777777666533 3366777777777777777877777777665531 112222
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHhccC---C-C--CeehHHHHHHH
Q 042265 246 LVSALSACARLGELEQGKNIHRYIELNQI-RVDSFLSTGLVDFYAKCGYINTAIEIFESSQ---E-K--NLFTWNAMLVG 318 (490)
Q Consensus 246 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~-~--~~~~~~~l~~~ 318 (490)
...-+..-...++.+++......+...-- .+.. ...++-....+....+. . + .+.++..+...
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 22222333345666666666655543210 0000 01111122222222221 1 1 12223222222
Q ss_pred HHHcCChHHHHHHHHHHHHCCCC--CC------HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIK--PD------GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~--p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
.... ...+..-.. +....+. |+ ...|......+.+.++.++|...+.+..+ ..+.....|......+
T Consensus 620 ~a~~--~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 620 VASQ--LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLL 694 (799)
T ss_pred HHhh--hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHH
Confidence 1111 111100000 1111112 22 12344556667888999999999999887 5667777888888889
Q ss_pred hhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCCchHHHHHHHHHhcCChHHHH
Q 042265 391 GRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEA--AAEHVMKLKPEDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
...|+.++|.+.|.... ..| ++.+..++...+.+.|+...|.. ++..+++.+|.++.+|..++..+.+.|+.++|.
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH
Confidence 99999999999987744 444 88899999999999999888888 999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 042265 467 KIRRSLDAG 475 (490)
Q Consensus 467 ~~~~~m~~~ 475 (490)
+.|+...+.
T Consensus 775 ecf~aa~qL 783 (799)
T KOG4162|consen 775 ECFQAALQL 783 (799)
T ss_pred HHHHHHHhh
Confidence 999987654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.5e-11 Score=96.36 Aligned_cols=163 Identities=13% Similarity=0.018 Sum_probs=121.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG 391 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (490)
...|.-+|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++..+ -.+.+..+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 3345566777788888887777777753 22445667777777778888888888888776 45556677777777788
Q ss_pred hcCCHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHH
Q 042265 392 RAGLIEEALEMIKKMPMGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVK 467 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (490)
..|++++|...|++....| ...+|..++.+..+.|+++.|...|++.++.+|+.+.+...++......|++-+|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 8888888888887776665 566777777777788888888888888888888888788888888888888888888
Q ss_pred HHHHHhcCCC
Q 042265 468 IRRSLDAGKI 477 (490)
Q Consensus 468 ~~~~m~~~~~ 477 (490)
.+++....+.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 8877766654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-08 Score=89.50 Aligned_cols=271 Identities=11% Similarity=0.033 Sum_probs=182.4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeh---HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042265 176 DVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVS---WGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSA 252 (490)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 252 (490)
|+.....+.+.+...|+.++|+..|++...-|+.+ .....-.+.+.|+.+....+...+.... +-+...|..-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 55666677777777777777777777655433322 2223334456677777777766665432 2233334444444
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC--CC-CeehHHHHHHHHHHcCChHHHH
Q 042265 253 CARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ--EK-NLFTWNAMLVGLAMHGLGRLSL 329 (490)
Q Consensus 253 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~ 329 (490)
....+++..|..+-++.++.. +.+...+..-..++...++.++|.-.|+... .| +...|.-|+..|...|+..+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 456677777777777766654 4445555555566777778888777777644 33 6677888888888888888887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHhh-ccCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHhhhhhcCCHHHHHHHHhh-
Q 042265 330 VYFSRMIEARIKPDGVTILGAL-VGCS-HAGLVDEARKLFDEMESVYGVSKE-LKHYGCMADLLGRAGLIEEALEMIKK- 405 (490)
Q Consensus 330 ~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~- 405 (490)
-+-+..... ...+..+...+. ..|. ...--++|..++++..+ ..|+ ....+.+...+...|+.++++.++++
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 766655443 233555555552 2232 23345788888888775 2343 45667788889999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 042265 406 MPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVL 452 (490)
Q Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 452 (490)
+...+|...-+.|...+...+.+++|.+.|..+++++|++..+...+
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 45667888999999999999999999999999999999987555444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-10 Score=98.55 Aligned_cols=199 Identities=20% Similarity=0.168 Sum_probs=105.2
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456666666777777777777777666543 2234455566666666666666666666666553 3334444445555
Q ss_pred HHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP-DGVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
+...|++++|...+++ .......| ....+..+...+...|++++|...
T Consensus 109 ~~~~g~~~~A~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQ-------------------------------AIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred HHHcccHHHHHHHHHH-------------------------------HHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555555544 43321111 122333344445555555555555
Q ss_pred HHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM--GGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
+++..+ ..+.+...+..+...+...|++++|...+++... ..+...+..++..+...|+.+.|..+.+.+.+.
T Consensus 158 ~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 555554 2223344455555555555555555555554321 114444444555555566666666665555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-08 Score=88.33 Aligned_cols=348 Identities=14% Similarity=0.080 Sum_probs=166.9
Q ss_pred HHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 042265 85 AHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRD 164 (490)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 164 (490)
.+.+.|++++|...|+.+.+.. .|+...+..|.-+..-.|.+.+|..+-... +.++-.-..+...-.+.|+-++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHH
Confidence 3445555555555555544432 334444444444444445555554443321 2222222333334444454444
Q ss_pred HHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCC--eehHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042265 165 AQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRD--AVSWGT-LVAGYAQSDQCEEAIQLFCNMMDLDIKP 241 (490)
Q Consensus 165 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~~~p 241 (490)
-..+-+.+... ...--++.......-.+.+|++++.++...+ -...|. +.-+|.+..-++-+.++++-..+. -|
T Consensus 140 ~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~p 216 (557)
T KOG3785|consen 140 ILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FP 216 (557)
T ss_pred HHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CC
Confidence 44443333221 1222334444444557888999998876543 233333 445677777788888877776664 24
Q ss_pred CH-HHHHHHHHHHHcc--CChHHH--HH----------HHHHHHHcCC------------CC-----ChhhHHHHHHHHH
Q 042265 242 DN-IALVSALSACARL--GELEQG--KN----------IHRYIELNQI------------RV-----DSFLSTGLVDFYA 289 (490)
Q Consensus 242 ~~-~~~~~l~~~~~~~--~~~~~a--~~----------~~~~~~~~~~------------~~-----~~~~~~~l~~~~~ 289 (490)
|+ ...+..+....+. |+..+. .. ..+.+.+.++ -| -+.....|+-.|.
T Consensus 217 dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL 296 (557)
T KOG3785|consen 217 DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYL 296 (557)
T ss_pred CcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeec
Confidence 43 3333333222222 221111 01 1111111110 00 1223334555678
Q ss_pred hcCCHHHHHHHHhccCCCCeehHHHHHHHHHHc-------------------------------------------CChH
Q 042265 290 KCGYINTAIEIFESSQEKNLFTWNAMLVGLAMH-------------------------------------------GLGR 326 (490)
Q Consensus 290 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-------------------------------------------~~~~ 326 (490)
+.+++.+|..+.+++....+.-|-.-.-.+... .+++
T Consensus 297 ~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFd 376 (557)
T KOG3785|consen 297 NQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFD 376 (557)
T ss_pred ccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence 888999999888877654443332222222222 2333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHH-HHHHhhhhhcCCHHHHHHHHhh
Q 042265 327 LSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHY-GCMADLLGRAGLIEEALEMIKK 405 (490)
Q Consensus 327 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 405 (490)
+.+..++.....-...|.. --.+.++.+..|++.+|+++|-.+... .++ |..+| ..|.++|.+.++++-|+.++-+
T Consensus 377 dVl~YlnSi~sYF~NdD~F-n~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk 453 (557)
T KOG3785|consen 377 DVLTYLNSIESYFTNDDDF-NLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLK 453 (557)
T ss_pred HHHHHHHHHHHHhcCcchh-hhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence 3333333333221111111 122445556666677777766665542 222 33333 4456666677777777776666
Q ss_pred CCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 406 MPMGGDVFVWSGL-LGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 406 ~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
+....+..++..+ ...|.+.+++--|-+.|+.+...+|.
T Consensus 454 ~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 454 TNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 5544433333333 33466666666666666666666664
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-12 Score=82.16 Aligned_cols=50 Identities=28% Similarity=0.497 Sum_probs=42.2
Q ss_pred CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhc
Q 042265 74 PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQ 123 (490)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 123 (490)
||+.+||.+|+++++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888888764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-09 Score=87.91 Aligned_cols=388 Identities=15% Similarity=0.048 Sum_probs=255.0
Q ss_pred cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHH-HHHHHH
Q 042265 78 SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLN-SLMHVY 156 (490)
Q Consensus 78 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~ 156 (490)
-+++.+..+.+..+++.|++++..-.+.. +.+....+.|..+|-...++..|-..++++... .|...-|. --...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 36677777888999999999998887763 236677888888999999999999999998774 45555443 335667
Q ss_pred HhcCChHHHHHHHHhcccC-CchhHHHHHH--HHHhcCCHHHHHHHHhhCC-CCCeehHHHHHHHHHhcCChhHHHHHHH
Q 042265 157 CVFHRLRDAQELFDEILYR-DVVSCNTLID--GYVKAGDLAHARQLFDRMP-FRDAVSWGTLVAGYAQSDQCEEAIQLFC 232 (490)
Q Consensus 157 ~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 232 (490)
.+.+.+..|+.+...|... +...-..-+. .....+|+..+..++++.. +.+..+.+.......+.|+++.|.+-|+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 7889999999999998764 2222222222 2345789999999999998 4677888888888899999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChh---------------------hHHHHHH-----
Q 042265 233 NMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSF---------------------LSTGLVD----- 286 (490)
Q Consensus 233 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~l~~----- 286 (490)
...+-+---....|+..+. ..+.++.+.|.++..++++.|++..+. .-+.+++
T Consensus 169 aAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLK 247 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLK 247 (459)
T ss_pred HHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhh
Confidence 9887543334456766554 457789999999999998887643211 1223333
Q ss_pred --HHHhcCCHHHHHHHHhccCCC-----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 042265 287 --FYAKCGYINTAIEIFESSQEK-----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGL 359 (490)
Q Consensus 287 --~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 359 (490)
.+.+.|+++.|.+.+-.|+.+ |++|...+.-.= ..+++-+..+-+.-+.+...- ...||..++-.||+..-
T Consensus 248 aAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNey 325 (459)
T KOG4340|consen 248 AAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEY 325 (459)
T ss_pred hhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHH
Confidence 356789999999999999853 667665553322 234455555555556655443 45789999999999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCC---HHHHHHH
Q 042265 360 VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGG--CRIHGN---VEIAEAA 434 (490)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~~~---~~~a~~~ 434 (490)
++.|-.++.+-....-.-.+...|+.|=......-..++|.+-++.+...-....-...+.. -...++ ...+++-
T Consensus 326 f~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~ 405 (459)
T KOG4340|consen 326 FDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNE 405 (459)
T ss_pred HhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 99988887664432011123344443322223344566666655543311000011111111 111111 2234444
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 435 AEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
+++.+++..+ +....++.|.+..++..+.++|+.-.+
T Consensus 406 Yd~~LE~YLP---VlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 406 YDETLEKYLP---VLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHH---HHHHHHHhhccccccHHHHHHHHHHHh
Confidence 5555553322 667778889999999999999986544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-10 Score=111.55 Aligned_cols=213 Identities=12% Similarity=-0.034 Sum_probs=165.9
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---------cCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCC
Q 042265 257 GELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK---------CGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGL 324 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 324 (490)
++.++|...+++..+.. |.+...+..+..+|.. .+++++|...+++..+- +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678999999999875 4556667666665542 24488999999987753 55678888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHh
Q 042265 325 GRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIK 404 (490)
Q Consensus 325 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (490)
+++|...+++..+.+ +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|...++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999864 224567788888899999999999999999873 22233333444555667899999999998
Q ss_pred hCCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 405 KMPMG--G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 405 ~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+.... | ++..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 86532 3 56667778888999999999999999988888888877888888888888 4888877776653
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.3e-08 Score=91.70 Aligned_cols=382 Identities=13% Similarity=0.056 Sum_probs=216.5
Q ss_pred CCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 042265 57 TTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTI 133 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 133 (490)
..|+-++|......-. ..+.++|..+.-.+....++++|++.|......+ +-|...+.-+--.-++.|+++.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3788888888877543 4577889888888888889999999999988754 33444566555555677888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc-----CCchhHHHHH------HHHHhcCCHHHHHHHHhh
Q 042265 134 HSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY-----RDVVSCNTLI------DGYVKAGDLAHARQLFDR 202 (490)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~------~~~~~~~~~~~a~~~~~~ 202 (490)
...+.+.. +-....|..+..++.-.|+...|..+++...+ ++...+.... ....+.|.++.|.+.+..
T Consensus 132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 88877763 45566777888888888999888888877632 3333333222 234456666666666655
Q ss_pred CCCC--Cee-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHccCChHHH-HHHHHHHHHcCCCCC
Q 042265 203 MPFR--DAV-SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALS-ACARLGELEQG-KNIHRYIELNQIRVD 277 (490)
Q Consensus 203 ~~~~--~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a-~~~~~~~~~~~~~~~ 277 (490)
-... |-. .-..-...+.+.++.++|..+|..++.. .||...|...+. ++....+.-++ ..+|....+. .|.
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r 286 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPR 286 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccc
Confidence 4432 211 2223344566666677777776666664 355554443333 22212121122 2333333222 111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA 357 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 357 (490)
......+- +.......-.+..-.++..+.+.|+++--..+.++-. .-
T Consensus 287 ~e~p~Rlp------------------------------lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p 333 (700)
T KOG1156|consen 287 HECPRRLP------------------------------LSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DP 333 (700)
T ss_pred cccchhcc------------------------------HHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---ch
Confidence 11000000 0000001112233345556666665543333322221 11
Q ss_pred CcHHHHHHHHHHhHHhh-C------------CCCCch--HHHHHHhhhhhcCCHHHHHHHHhhCCCC-C-CHHHHHHHHH
Q 042265 358 GLVDEARKLFDEMESVY-G------------VSKELK--HYGCMADLLGRAGLIEEALEMIKKMPMG-G-DVFVWSGLLG 420 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~-~------------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~ 420 (490)
...+-.+++.-.+.... + -+|... ++-.++..+-+.|+++.|..+++....+ | -+..|..-.+
T Consensus 334 ~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaR 413 (700)
T KOG1156|consen 334 EKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKAR 413 (700)
T ss_pred hHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 11111111111111100 1 134443 3345677778888888888888876644 3 2334444446
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 477 (490)
.+...|+.++|..+++++.+++-.|..+-..-+.-..++++.++|.++....-+.|.
T Consensus 414 I~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 677888888888888888887777764444666677788888888888877766553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-07 Score=85.55 Aligned_cols=388 Identities=13% Similarity=0.089 Sum_probs=234.1
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhC-CCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTV-SIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHV 155 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 155 (490)
..|-..+..+.++|+...-...|+..... .+......|...+......+-++.+..+++..++. ++..-...+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 56777777777777777777777766543 33334456777777766777777777777777653 23335566667
Q ss_pred HHhcCChHHHHHHHHhcccC----------C--------------------------------------chhHHHHHHHH
Q 042265 156 YCVFHRLRDAQELFDEILYR----------D--------------------------------------VVSCNTLIDGY 187 (490)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~----------~--------------------------------------~~~~~~l~~~~ 187 (490)
+++.+++++|.+.+..++.. + ...|++|.+.|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 77777777777776666221 1 12466666667
Q ss_pred HhcCCHHHHHHHHhhCCCC--CeehHHHHHHHHHhc----------------C------ChhHHHHHHHHHHhCCC----
Q 042265 188 VKAGDLAHARQLFDRMPFR--DAVSWGTLVAGYAQS----------------D------QCEEAIQLFCNMMDLDI---- 239 (490)
Q Consensus 188 ~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~----------------g------~~~~A~~~~~~m~~~~~---- 239 (490)
.+.|++++|.++|++.... ++.-|..+-.+|+.- | +++-.+..|+.+.+.+.
T Consensus 259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 7777777777777664432 222222222222211 1 11122223333322210
Q ss_pred -------CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHhccCC
Q 042265 240 -------KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRV------DSFLSTGLVDFYAKCGYINTAIEIFESSQE 306 (490)
Q Consensus 240 -------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 306 (490)
+-+...|..-.. ...|+..+-...+.++.+.- .| -...|..+...|-..|+++.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 011112211111 12345555666666666541 22 134678889999999999999999999887
Q ss_pred CCee-------hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC----------C-------CHHHHHHHHHHhhccCcHHH
Q 042265 307 KNLF-------TWNAMLVGLAMHGLGRLSLVYFSRMIEARIK----------P-------DGVTILGALVGCSHAGLVDE 362 (490)
Q Consensus 307 ~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~----------p-------~~~~~~~l~~~~~~~g~~~~ 362 (490)
-+-. +|..-...-.++.+++.|++++++.....-. | +...|...+..-...|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 5433 4555555556788899999988876542111 1 11234444554555678888
Q ss_pred HHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC---CCC-CHHHHHHHHHHHHh---cCCHHHHHHHH
Q 042265 363 ARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP---MGG-DVFVWSGLLGGCRI---HGNVEIAEAAA 435 (490)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-~~~~~~~l~~~~~~---~~~~~~a~~~~ 435 (490)
...+|+++... .+ .++...-.....+....-++++.+++++-. .-| -..+|+..+.-+.+ ....+.|..+|
T Consensus 496 tk~vYdriidL-ri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 496 TKAVYDRIIDL-RI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHH-hc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 88999998874 32 233333334445667788999999999854 223 44577777766543 34789999999
Q ss_pred HHHHhhCCCCC--chHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 436 EHVMKLKPEDG--GVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 436 ~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+++++.-|+.. ..|...+..-.+-|....|..++++.-
T Consensus 574 EqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 574 EQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999777533 233344445556788999999998853
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.1e-09 Score=95.28 Aligned_cols=218 Identities=13% Similarity=0.003 Sum_probs=151.5
Q ss_pred cCChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042265 221 SDQCEEAIQLFCNMMDLD-IKPD--NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTA 297 (490)
Q Consensus 221 ~g~~~~A~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 297 (490)
.+..+.++.-+.+++... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...++.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345677777777777532 1222 3456777778888899999998888888876 56778888899999999999999
Q ss_pred HHHHhccCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh
Q 042265 298 IEIFESSQE--K-NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVY 374 (490)
Q Consensus 298 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (490)
...|++..+ | +..+|..+..++...|++++|.+.+++..+. .|+..........+...++.++|...+++...
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 999888764 3 4567788888888999999999999998875 34433222222223456789999999977665
Q ss_pred CCCCCchHHHHHHhhhhhcCCHH--HHHHHHhhCCCC-C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 375 GVSKELKHYGCMADLLGRAGLIE--EALEMIKKMPMG-G-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...++...+ .+... ..|+.. ++.+.+.+.... + ....|..++..+.+.|++++|+..|+++++.+|++.
T Consensus 194 ~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 334443322 23332 344443 333333322111 1 446788999999999999999999999999997544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=9e-08 Score=84.82 Aligned_cols=264 Identities=11% Similarity=0.005 Sum_probs=198.5
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042265 206 RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNI-ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGL 284 (490)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (490)
.|+.....+...+...|+.++|+..|++.+.. .|+.. ....-.-.+.+.|+.+....+...+.... ..+...|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 37888999999999999999999999998764 34332 22222333467788888877777766543 2334444444
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCe---ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 042265 285 VDFYAKCGYINTAIEIFESSQEKNL---FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVD 361 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 361 (490)
+......++++.|+.+-++..+.++ ..+-.-...+...+++++|.-.|+..+... +-+..+|..|+.+|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 5556667889999999888776444 444444567889999999999999988752 236789999999999999999
Q ss_pred HHHHHHHHhHHhhCCCCCchHHHHHH-hhhh-hcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042265 362 EARKLFDEMESVYGVSKELKHYGCMA-DLLG-RAGLIEEALEMIKK-MPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEH 437 (490)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 437 (490)
+|.-.-+...+ .++.+..+...+. ..+. .-..-++|.+++++ +..+| -....+.+...+...|..++++.++++
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99988887776 4555666655542 3332 22334789999987 45566 456677788889999999999999999
Q ss_pred HHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 438 VMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 438 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.+...|+.. ..+.|+..+...+.+.+|.+.|....+.+
T Consensus 464 ~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 464 HLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 999999776 99999999999999999999998776543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-11 Score=77.55 Aligned_cols=50 Identities=32% Similarity=0.584 Sum_probs=42.8
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 042265 206 RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACAR 255 (490)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 255 (490)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57788888888888888888888888888888888888888888888764
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-07 Score=88.30 Aligned_cols=381 Identities=11% Similarity=-0.015 Sum_probs=232.3
Q ss_pred HHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 042265 83 IRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRL 162 (490)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 162 (490)
++-+...|++++|.....++...+ +-|...+..=+-+..+.+.++.|..+.+.-.. ...+...+..-..+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHcccH
Confidence 455678899999999999998765 44555677777778889999999855433111 111122222334556689999
Q ss_pred HHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 042265 163 RDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD 242 (490)
Q Consensus 163 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 242 (490)
++|+..++.....|..+...-...+.+.|++++|.++|+.+.+.+...+...+++-+-.--...... .+......|
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~---~~q~v~~v~- 171 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ---LLQSVPEVP- 171 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH---HHHhccCCC-
Confidence 9999999966555666777778889999999999999999987766666555544222111111111 122222333
Q ss_pred HHHHHHH---HHHHHccCChHHHHHHHHHHHHcCC-------CCCh-------hhHHHHHHHHHhcCCHHHHHHHHhccC
Q 042265 243 NIALVSA---LSACARLGELEQGKNIHRYIELNQI-------RVDS-------FLSTGLVDFYAKCGYINTAIEIFESSQ 305 (490)
Q Consensus 243 ~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~ 305 (490)
..+|..+ ...+...|++.+|+++++...+.+. ..+. .+-..+.-++...|+.++|..++....
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 2244433 3445678999999999998833211 1111 122335556778999999999887765
Q ss_pred CC---Ce----ehHHHHHHH-----------------------------HH----------------HcCChHHHHHHHH
Q 042265 306 EK---NL----FTWNAMLVG-----------------------------LA----------------MHGLGRLSLVYFS 333 (490)
Q Consensus 306 ~~---~~----~~~~~l~~~-----------------------------~~----------------~~~~~~~A~~~~~ 333 (490)
+. |. +.-|.++.. +. ..+..+.+.++..
T Consensus 252 ~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a 331 (652)
T KOG2376|consen 252 KRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSA 331 (652)
T ss_pred HhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 42 11 001111100 00 0000111111100
Q ss_pred HHHHCCCCCCHHHHHHHHHHhh--ccCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHhhhhhcCCHHHHHHHHh------
Q 042265 334 RMIEARIKPDGVTILGALVGCS--HAGLVDEARKLFDEMESVYGVSKE-LKHYGCMADLLGRAGLIEEALEMIK------ 404 (490)
Q Consensus 334 ~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~------ 404 (490)
.. .+..|. ..+..++..+. +...+.++..++....+ +.+.+ ..+.-..+......|+++.|.+++.
T Consensus 332 ~l--p~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 332 SL--PGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred hC--CccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 00 111222 33444444432 22256778888887776 44444 4456667788889999999999998
Q ss_pred --hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----h---CCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 405 --KMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK----L---KPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 405 --~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.+..-. .+.+...+...+.+.++.+.|..++..++. . .+....++..++..-.+.|+-++|..+++++.+
T Consensus 407 ~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 407 KSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 433222 566777777778888888888888888877 1 122223455556666778999999999999977
Q ss_pred C
Q 042265 475 G 475 (490)
Q Consensus 475 ~ 475 (490)
.
T Consensus 487 ~ 487 (652)
T KOG2376|consen 487 F 487 (652)
T ss_pred h
Confidence 4
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.23 E-value=9e-08 Score=91.62 Aligned_cols=402 Identities=11% Similarity=0.048 Sum_probs=234.0
Q ss_pred CCCChhHHHHhhccCCC--CC-cccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHh-c-----cCCc
Q 042265 57 TTDPLSYALSIFNNIPY--PS-TFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACS-Q-----LCSH 127 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-~-----~~~~ 127 (490)
..|++++|++.++.... .| ..........+.+.|+.++|..+|..+.+.+ |+...|...+..+. . ..+.
T Consensus 16 e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccccH
Confidence 46888888888876442 23 3445566677788888888888888888764 66665555544443 1 1245
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH-HHHHHHHhcccCCc-hhHHHHHHHHHhcCCHHHHHHHHhhCC-
Q 042265 128 SLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLR-DAQELFDEILYRDV-VSCNTLIDGYVKAGDLAHARQLFDRMP- 204 (490)
Q Consensus 128 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~- 204 (490)
+...++++++...- |.......+.-.+.....+. .+...+..+....+ .+++.+-..|......+-..+++....
T Consensus 94 ~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~ 171 (517)
T PF12569_consen 94 EKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVN 171 (517)
T ss_pred HHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 66677777766542 33333333322222212222 33444444444443 466666666665544444444444321
Q ss_pred -----------------CCCe--ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCChHHHHH
Q 042265 205 -----------------FRDA--VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD-NIALVSALSACARLGELEQGKN 264 (490)
Q Consensus 205 -----------------~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 264 (490)
.|.. .++..+...|...|++++|++++++.++. .|+ +..|..-.+.+-+.|++.+|..
T Consensus 172 ~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 172 SLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred hhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 0111 24566677788888888888888888875 454 5577777888888888888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCee----------hH--HHHHHHHHHcCChHHHHHHH
Q 042265 265 IHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLF----------TW--NAMLVGLAMHGLGRLSLVYF 332 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~--~~l~~~~~~~~~~~~A~~~~ 332 (490)
.++...+.. .-|-.+-+-.+..+.+.|++++|.+++....+++.. .| .....+|.+.|++..|++.|
T Consensus 250 ~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 250 AMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888776 566677777778888888888888888777665421 12 23356777888888888887
Q ss_pred HHHHHC--CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC---------------
Q 042265 333 SRMIEA--RIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL--------------- 395 (490)
Q Consensus 333 ~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------- 395 (490)
....+. .+.-|..-|... |.+.+-+..=.++++---..+..+.-.......+..|.+.-+
T Consensus 329 ~~v~k~f~~~~~DQfDFH~Y---c~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~ 405 (517)
T PF12569_consen 329 HAVLKHFDDFEEDQFDFHSY---CLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNE 405 (517)
T ss_pred HHHHHHHHHHhcccccHHHH---HHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccc
Confidence 776552 223333333322 445554433333332221111112222233344445432110
Q ss_pred -H--HHHHHHHhhCC-------------------------------CCC---CHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 042265 396 -I--EEALEMIKKMP-------------------------------MGG---DVFVWSGLLGGCRIHG-NVEIAEAAAEH 437 (490)
Q Consensus 396 -~--~~A~~~~~~~~-------------------------------~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~ 437 (490)
. .+..+.-++.. ..+ |.. .+..-+.+.. =.++|.++++.
T Consensus 406 ~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~D---p~GekL~~t~dPLe~A~kfl~p 482 (517)
T PF12569_consen 406 NMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDD---PLGEKLLKTEDPLEEAMKFLKP 482 (517)
T ss_pred cCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCC---ccHHHHhcCCcHHHHHHHHHHH
Confidence 0 00001110000 000 111 1222233333 34789999999
Q ss_pred HHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 438 VMKLKPEDGGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 438 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
+.+..|++..++..-..+|.+.|++--|.+.+.+
T Consensus 483 L~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 483 LLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 9999999999999999999999999888887654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-08 Score=91.21 Aligned_cols=384 Identities=15% Similarity=0.060 Sum_probs=230.5
Q ss_pred CCCChhHHHHhhccC---CCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccCCcHHHHH
Q 042265 57 TTDPLSYALSIFNNI---PYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF-YSFPFLLRACSQLCSHSLAQT 132 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~ 132 (490)
..|++++|+..|... .++|.+.|..-..+|++.|++++|++=-.+-++. .|+- ..|+....++.-.|++++|..
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHH
Confidence 479999999999764 3678899999999999999999998877776664 5664 479999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh------cc-cC------CchhHHHHHHHHH----------h
Q 042265 133 IHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDE------IL-YR------DVVSCNTLIDGYV----------K 189 (490)
Q Consensus 133 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------~~-~~------~~~~~~~l~~~~~----------~ 189 (490)
.|.+-++.. +.+...++.+..++... . .+.+.|.. +. .| ....|..++..+- .
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999988875 66777788888877211 1 11111111 10 00 1112333332221 1
Q ss_pred cCCHHHHHHHHhhC----------------CCC------------C----------eehHHHHHHHHHhcCChhHHHHHH
Q 042265 190 AGDLAHARQLFDRM----------------PFR------------D----------AVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 190 ~~~~~~a~~~~~~~----------------~~~------------~----------~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
-..+..+.-.+... ..| | ..-...+.++..+..+++.|++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 11111111111110 011 0 112456677777778888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHH-------HHHHHHHhcCCHHHHHHHHhcc
Q 042265 232 CNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLST-------GLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 232 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
....+.. -+..-++....++...|....+........+.|.. ...-++ .+..+|.+.++++.++..|.+.
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 8877654 34444566666777778777777766666655421 111222 2333555666777777777664
Q ss_pred CCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHH
Q 042265 305 QEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDG-VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHY 383 (490)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 383 (490)
..+... -....+....+++........-. .|.. .-...-...+.+.|++..|...|.++.+ ..|.|...|
T Consensus 325 Lte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~lY 395 (539)
T KOG0548|consen 325 LTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDARLY 395 (539)
T ss_pred hhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhHHH
Confidence 432111 11122233344444444333322 2222 1111123445667888888888888777 456677777
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
..-.-+|.+.|.+..|++-.+.... .| ....|..=+.++....+++.|.+.|++.++.+|.+......+.++...
T Consensus 396 sNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 396 SNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 7777788888888877776665432 22 444455445555566678888888888888888777666666655554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.6e-10 Score=94.98 Aligned_cols=223 Identities=13% Similarity=0.090 Sum_probs=178.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC--CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHcc
Q 042265 180 CNTLIDGYVKAGDLAHARQLFDRMP--FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIAL-VSALSACARL 256 (490)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~ 256 (490)
-+.+.++|.+.|.+.+|.+.|+... .+-+.||-.|-++|.+..++..|+.++.+-++. .|-.+|| .-+.+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3678889999999999999998765 346789999999999999999999999988875 4655555 5677888889
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHH
Q 042265 257 GELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFS 333 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 333 (490)
++.+.|.++|+...+.. +.+++....+...|.-.++++-|+.+|+++.+ .++..|+.+.-+|.-.++++-++..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 99999999999999886 67777777888888889999999999998765 578889999999999999999999998
Q ss_pred HHHHCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 334 RMIEARIKPD--GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 334 ~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
+....--.|+ ...|-.+-......||...|.+.|+-... ....+...++.|.-.-.+.|++++|..+++...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 8876544444 34566666667778888888888888776 555566677777777777777777777776554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=7e-10 Score=100.26 Aligned_cols=216 Identities=13% Similarity=-0.015 Sum_probs=153.6
Q ss_pred CChHHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHH
Q 042265 257 GELEQGKNIHRYIELNQ-IRV--DSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 330 (490)
+..+.++.-+.++.... ..| ....+..+...|.+.|+.++|...|++..+ .++..|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566677777777542 122 245678888899999999999999998764 356789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC
Q 042265 331 YFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG 410 (490)
Q Consensus 331 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (490)
.|++..+.... +..++..+..++...|++++|.+.+++..+. .+.+. ........+...++.++|...|++.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDP-YRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999985322 4567788888888999999999999999874 22232 22222223456788999999996643221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVM-------KLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 478 (490)
+...|. ........|+...+ ..++.+. +..|+...+|..++.++.+.|++++|...|++..+.+..
T Consensus 196 ~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 196 DKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 222232 12223334555433 2444443 355666779999999999999999999999999876643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.5e-08 Score=92.75 Aligned_cols=373 Identities=16% Similarity=0.114 Sum_probs=214.8
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY 112 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 112 (490)
.+.+-.-.++.++. .++.+|..+|-+-. .-...|..|....+|++|+.+-+. .|.+.-..
T Consensus 531 t~fykvra~lail~------------kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~---~~~p~~ek 590 (1636)
T KOG3616|consen 531 TDFYKVRAMLAILE------------KKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEA---KGHPALEK 590 (1636)
T ss_pred chHHHHHHHHHHHH------------hhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHH
Confidence 44445556666666 67888888885522 112345566666777777776543 22222122
Q ss_pred cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh--cccCCchhHHHHHHHHHhc
Q 042265 113 SFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDE--ILYRDVVSCNTLIDGYVKA 190 (490)
Q Consensus 113 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~ 190 (490)
.-.+.++++...|+-++|-++- . .+.. -...|..|.+.|.+.+|.+.-.. .+..|......+..++.+.
T Consensus 591 lk~sy~q~l~dt~qd~ka~elk----~----sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~ 661 (1636)
T KOG3616|consen 591 LKRSYLQALMDTGQDEKAAELK----E----SDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKG 661 (1636)
T ss_pred HHHHHHHHHHhcCchhhhhhhc----c----ccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhh
Confidence 2334455555556555554321 1 1111 12345666666666665544321 1222333333333333333
Q ss_pred CCHHHHHHHHhhCCCCC--------------------------ee-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 042265 191 GDLAHARQLFDRMPFRD--------------------------AV-SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDN 243 (490)
Q Consensus 191 ~~~~~a~~~~~~~~~~~--------------------------~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 243 (490)
.-+++|-++|+++..++ ++ .-......+...|+++.|...|-+..
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~-------- 733 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-------- 733 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--------
Confidence 33333333333333221 11 11122233444555555555443321
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcC
Q 042265 244 IALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHG 323 (490)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 323 (490)
.....+.+......|.+|+.+++.+.... .-...|..+.+-|...|+++.|.++|-+.. .++-.|..|.+.|
T Consensus 734 -~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 734 -CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAG 805 (1636)
T ss_pred -hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccc
Confidence 12233455566778888888888777663 334556777888889999999999887644 3556778888999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHH
Q 042265 324 LGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMI 403 (490)
Q Consensus 324 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (490)
+|++|.++-.+. .|.......|..-..-+-+.|++.+|+++|-.+.. |+. .|.+|-+.|..++.+++.
T Consensus 806 kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred cHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----chH-----HHHHHHhhCcchHHHHHH
Confidence 999888875544 33344445565555667778888888887755433 432 567788888888888888
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 042265 404 KKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
++-....-..|-..+..-+-..|+.+.|+..|-++- -|..-...|...+.|++|.++-+
T Consensus 874 ~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 874 EKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 775533344556666777777888888877776642 34555566666777777766543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.3e-08 Score=95.59 Aligned_cols=148 Identities=15% Similarity=0.043 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh-------------CCCCCc--hHHHHHHhhhh
Q 042265 327 LSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVY-------------GVSKEL--KHYGCMADLLG 391 (490)
Q Consensus 327 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~--~~~~~l~~~~~ 391 (490)
.+...+..+..+|+++ +|..+-..|.......-..+++....... .-+|+. .++..+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 3455666777777653 45555555555555555555555544321 112333 34466788889
Q ss_pred hcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 392 RAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
..|++++|++++++.. ..| .+..|..-+..+.+.|++++|.+.++.+.++++.|..+-+..+..+.++|++++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999755 445 57788888888999999999999999999999999988888889999999999999999
Q ss_pred HHHhcCCC
Q 042265 470 RSLDAGKI 477 (490)
Q Consensus 470 ~~m~~~~~ 477 (490)
....+.+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 98877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.9e-08 Score=83.47 Aligned_cols=302 Identities=14% Similarity=0.046 Sum_probs=194.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHH---HHHhcCCHHHHHHHHhhCCCCCeehHHHH---HHHH
Q 042265 145 DVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLID---GYVKAGDLAHARQLFDRMPFRDAVSWGTL---VAGY 218 (490)
Q Consensus 145 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~ 218 (490)
++.-...+.+.+...|++..|+.-|...++-|+..|.++.+ .|...|+-..|+.-++++.+..+..+.+- ...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 34444556666777777777777777777777766665543 45666666666666666544333333332 2456
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCC------------HH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDIKPD------------NI--ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGL 284 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~p~------------~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (490)
.++|.+++|..=|+..++....-+ .. .....+..+.-.|+...|+.....+++.. +.|...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 777888888777777776532110 11 12233445556788888888888888776 6788888888
Q ss_pred HHHHHhcCCHHHHHHHHhccC---CCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH----HHHH-------
Q 042265 285 VDFYAKCGYINTAIEIFESSQ---EKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVT----ILGA------- 350 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~----~~~l------- 350 (490)
..+|...|++..|+.-++... ..+...+.-+-..+...|+.+.++...++-.+. .||... |..+
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~l 273 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSL 273 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHH
Confidence 888888888888887665444 456666666677777888888887777776653 455421 1111
Q ss_pred --HHHhhccCcHHHHHHHHHHhHHhhCCC---CCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHH
Q 042265 351 --LVGCSHAGLVDEARKLFDEMESVYGVS---KELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCR 423 (490)
Q Consensus 351 --~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 423 (490)
+......++|.++.+-.+...+. ... .....+..+-.++...|++-+|++...++. ..| |+.++..-..+|.
T Consensus 274 es~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 274 ESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 11233456677777777776653 211 112234455666777788888888777654 333 5777877788888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
-...++.|+.-|+.+.+.++++..+-.
T Consensus 353 ~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred hhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 888888888888888888887764444
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.5e-07 Score=83.65 Aligned_cols=409 Identities=17% Similarity=0.083 Sum_probs=254.6
Q ss_pred HHhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccC---CCCCcccHHHHHH
Q 042265 8 KRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNI---PYPSTFSYNTIIR 84 (490)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~ 84 (490)
.+.|+.+.+-.......+.+ + .|++.|..+.-.+. ...++++|++.+... .+.|...|.-+--
T Consensus 52 ~~lg~~~ea~~~vr~glr~d-~---~S~vCwHv~gl~~R----------~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl 117 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRND-L---KSHVCWHVLGLLQR----------SDKKYDEAIKCYRNALKIEKDNLQILRDLSL 117 (700)
T ss_pred hcccchHHHHHHHHHHhccC-c---ccchhHHHHHHHHh----------hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 34455555555555555555 4 78899998888888 889999999999864 3567777877776
Q ss_pred HHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhC-CCCchhHHHHHH------HHHH
Q 042265 85 AHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLG-FICDVFVLNSLM------HVYC 157 (490)
Q Consensus 85 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li------~~~~ 157 (490)
.-++.|+++.......+..+.. +.....|..+..+.--.|+...|..+++...+.. -.|+...+.... ....
T Consensus 118 LQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~ 196 (700)
T KOG1156|consen 118 LQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILI 196 (700)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH
Confidence 7778889999888888888753 3344568888888888899999999999998865 356666654433 3455
Q ss_pred hcCChHHHHHHHHhcccC--Cch-hHHHHHHHHHhcCCHHHHHHHHhhCCCC--CeehHH-HHHHHHHhcCChhHHH-HH
Q 042265 158 VFHRLRDAQELFDEILYR--DVV-SCNTLIDGYVKAGDLAHARQLFDRMPFR--DAVSWG-TLVAGYAQSDQCEEAI-QL 230 (490)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~-~l~~~~~~~g~~~~A~-~~ 230 (490)
+.|..+.|.+.+...... |.. .-.+-...+.+.+++++|..++..+..+ |...|. .+..++.+-.+.-++. .+
T Consensus 197 E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~l 276 (700)
T KOG1156|consen 197 EAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKAL 276 (700)
T ss_pred HcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 678888888887766433 222 3344566788999999999999998755 333344 4444444333334444 55
Q ss_pred HHHHHhCCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH----HHHHHhccC
Q 042265 231 FCNMMDLDIKPDNIAL-VSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINT----AIEIFESSQ 305 (490)
Q Consensus 231 ~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~ 305 (490)
|....+. .|....- ..=++......-.+....++....+.|+++-... +...|-.-...+- +..+...+.
T Consensus 277 y~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~SLyk~p~k~~~le~Lvt~y~~~L~ 351 (700)
T KOG1156|consen 277 YAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---LRSLYKDPEKVAFLEKLVTSYQHSLS 351 (700)
T ss_pred HHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh---hHHHHhchhHhHHHHHHHHHHHhhcc
Confidence 6555442 1211111 1111222222333445566777777776553332 2222221111110 111111111
Q ss_pred --------------CCCee--hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCcHHHHHHHHH
Q 042265 306 --------------EKNLF--TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDG-VTILGALVGCSHAGLVDEARKLFD 368 (490)
Q Consensus 306 --------------~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~ 368 (490)
.|... ++..++..+-..|+++.|...++..+++ .|+. .-|..-.+.+...|++++|..+++
T Consensus 352 ~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ 429 (700)
T KOG1156|consen 352 GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLD 429 (700)
T ss_pred cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 12222 3445677788889999999988888765 4543 234444567788899999999999
Q ss_pred HhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-CH--------HHHHHH--HHHHHhcCCHHHHHHHHHH
Q 042265 369 EMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-DV--------FVWSGL--LGGCRIHGNVEIAEAAAEH 437 (490)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~--------~~~~~l--~~~~~~~~~~~~a~~~~~~ 437 (490)
+..+ -..+|...-..-+.-..++++.++|.++.......+ +. -.|..+ +.+|.+.|++..|..-|..
T Consensus 430 ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 430 EAQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 8887 455665554455666678888999988887776544 11 123222 2346677777777666655
Q ss_pred HHh
Q 042265 438 VMK 440 (490)
Q Consensus 438 ~~~ 440 (490)
+-+
T Consensus 508 i~k 510 (700)
T KOG1156|consen 508 IEK 510 (700)
T ss_pred HHH
Confidence 544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=98.73 Aligned_cols=219 Identities=16% Similarity=0.094 Sum_probs=165.7
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHH
Q 042265 253 CARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSL 329 (490)
Q Consensus 253 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 329 (490)
+.+.|++.+|.-.|+..++.. |-+...|..|.......++-..|+..+++..+- |....-.|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356777777777777777776 667777887877777777777777777776653 3445555666677777777888
Q ss_pred HHHHHHHHCCCC-----C---CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHH
Q 042265 330 VYFSRMIEARIK-----P---DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALE 401 (490)
Q Consensus 330 ~~~~~m~~~~~~-----p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (490)
+.++.-+....+ + +...-.. ..+..........++|-++....+..+|+.+...|.-.|--.|.+++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 877776543210 0 0000000 12233334556667777776655666899999999999999999999999
Q ss_pred HHhhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 402 MIKKM-PMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 402 ~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.|+.. ..+| |..+|+.|...++...+.++|+..|.+++++.|.-..+.+.|+..|...|.|++|.+.|=....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99985 4666 9999999999999999999999999999999999999999999999999999999999876543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.9e-07 Score=87.64 Aligned_cols=375 Identities=13% Similarity=0.053 Sum_probs=208.3
Q ss_pred chhHHHHHH--HhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhC-C----
Q 042265 34 CHILTTILY--AITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTV-S---- 106 (490)
Q Consensus 34 ~~~~~~~l~--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~---- 106 (490)
|+.+=.+++ ++|. .-|+.+.|.+-.+.++ +-..|..+.+.+.+.++.+-|.-.+-.|... |
T Consensus 725 d~~TRkaml~FSfyv----------tiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAl 792 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYV----------TIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARAL 792 (1416)
T ss_pred CHHHHHhhhceeEEE----------EeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHH
Confidence 555556664 4566 7899999988877765 3468999999999999999888877777542 1
Q ss_pred ----CCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC-CchhHH
Q 042265 107 ----IPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR-DVVSCN 181 (490)
Q Consensus 107 ----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 181 (490)
..|+ .+=..+.-.....|-+++|+.+|.+-.+.+ .|=+.|-..|.+++|.++-+.-... =..||.
T Consensus 793 R~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy 862 (1416)
T KOG3617|consen 793 RRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYY 862 (1416)
T ss_pred HHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHH
Confidence 1222 222223333456788899999998877643 3445566789999998886654222 224777
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH
Q 042265 182 TLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQ 261 (490)
Q Consensus 182 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 261 (490)
....-+-..+|++.|++.|++...+--..+..|. .++.....+.+.+ -|...|.-...-+-..|+.|.
T Consensus 863 ~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHH
Confidence 7777788889999999999887543222221111 1111111222221 122333334444455566666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 042265 262 GKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIK 341 (490)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~ 341 (490)
|+.+|..+.. |-++++..+-.|+.++|-++-++- .|......+...|-..|++.+|..+|.+.+.
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---- 995 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---- 995 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----
Confidence 6666655443 223444444456666655554432 2334444555556666666666666655432
Q ss_pred CCHHHHHHHHHHh---------------hccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHh--
Q 042265 342 PDGVTILGALVGC---------------SHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIK-- 404 (490)
Q Consensus 342 p~~~~~~~l~~~~---------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-- 404 (490)
|...|+.| ....+.-.|-++|++.-- -+...+..|.++|.+.+|+++-=
T Consensus 996 -----fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~---------~~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen 996 -----FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG---------YAHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred -----HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch---------hhhHHHHHHHhhcchHHHHHHHHhh
Confidence 12222211 112223333344433321 01223445566666666655321
Q ss_pred -----------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------hCCCC------
Q 042265 405 -----------KMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK----------------------LKPED------ 445 (490)
Q Consensus 405 -----------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------~~p~~------ 445 (490)
.+....|+...+.-...+..+.++++|..++-.+.+ +.|..
T Consensus 1062 qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1062 QQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNE 1141 (1416)
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccH
Confidence 111112666666666666666666666555443322 11211
Q ss_pred ---CchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 446 ---GGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 446 ---~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
..++..++..|.+.|.|..|.+-|.+
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 13667888889999988877765543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-08 Score=95.71 Aligned_cols=226 Identities=18% Similarity=0.147 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcccC-------Cch----hHHHHHHHHHhcCCHHHHHHHHhhCC-------CC--
Q 042265 147 FVLNSLMHVYCVFHRLRDAQELFDEILYR-------DVV----SCNTLIDGYVKAGDLAHARQLFDRMP-------FR-- 206 (490)
Q Consensus 147 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~-- 206 (490)
.+...+...|...|+++.|..++++.+.. +.. ..+.+...|...+++++|..+|+++. -+
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666555322 111 12234455666666666666666543 11
Q ss_pred --CeehHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCC-CCHH-HHHHHHHHHHccCChHHHHHHHHHHHHc---CC
Q 042265 207 --DAVSWGTLVAGYAQSDQCEEAIQLFCNMMD-----LDIK-PDNI-ALVSALSACARLGELEQGKNIHRYIELN---QI 274 (490)
Q Consensus 207 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~-p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 274 (490)
-..+++.|..+|.+.|++++|...++...+ .|.. |... .++.+...|...+++++|..+++...+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 234677777788888888888777776543 1222 2222 4567777888899999998888876553 11
Q ss_pred CC----ChhhHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CeehHHHHHHHHHHcCChHHHHHHHHHHHH--
Q 042265 275 RV----DSFLSTGLVDFYAKCGYINTAIEIFESSQEK-----------NLFTWNAMLVGLAMHGLGRLSLVYFSRMIE-- 337 (490)
Q Consensus 275 ~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-- 337 (490)
.+ -..+++.|...|...|++++|.++++++... ....++.|...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 12 2467889999999999999999999876531 124677888889999999999988877543
Q ss_pred --CCC-CC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 338 --ARI-KP-DGVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 338 --~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
.|. .| ...+|..|...|...|+++.|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 332 12 246788889999999999999988887763
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.2e-08 Score=79.76 Aligned_cols=193 Identities=15% Similarity=0.038 Sum_probs=89.0
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHH
Q 042265 251 SACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRL 327 (490)
Q Consensus 251 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 327 (490)
-.|...|+...|..-+++.++.. |.+..++..+...|.+.|+.+.|.+.|++... .+..+.|....-+|..|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 33444444444444444444433 33333444444444444444444444443332 133344444444455555555
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC
Q 042265 328 SLVYFSRMIEARIKP-DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM 406 (490)
Q Consensus 328 A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (490)
|...|++....-.-| -..+|..+.-+..+.|+.+.|...|++..+ ..+..+.....+.....+.|++..|...++..
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 555555544432111 123444444444455555555555555554 33333444444555555555555555555544
Q ss_pred CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 407 PMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 407 ~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.... +..++...|..-...|+.+.+.++=.++.+..|...
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 3222 444444444445555665555555555555555544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.2e-07 Score=88.10 Aligned_cols=223 Identities=13% Similarity=0.048 Sum_probs=132.1
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
.+..|..+..+-.+.|...+|++-|-+. .|+..|..++..+.+.|.+++-.+++....+....|.+. +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 3567888888888888888888776442 356678888888888888888888887777765455443 56778
Q ss_pred HHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 042265 287 FYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
+|++.+++.+-++++. -||.........-|...|.++.|.-+|... ..|..|...+...|+++.|...
T Consensus 1175 AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888877766653 344444555555555556665555444322 2344455555555555555444
Q ss_pred HHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
-+++ .+..+|..+..+|...+.+.-|.-.=-.+. -.+.-+..++..|...|-+++.+.+++..+.+...+.
T Consensus 1243 aRKA-------ns~ktWK~VcfaCvd~~EFrlAQiCGL~ii--vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHM 1313 (1666)
T KOG0985|consen 1243 ARKA-------NSTKTWKEVCFACVDKEEFRLAQICGLNII--VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHM 1313 (1666)
T ss_pred hhhc-------cchhHHHHHHHHHhchhhhhHHHhcCceEE--EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHH
Confidence 3332 234455555555544443332211000000 0334455566666666666666666666666655556
Q ss_pred chHHHHHHHHHh
Q 042265 447 GVYKVLADVYAN 458 (490)
Q Consensus 447 ~~~~~l~~~~~~ 458 (490)
+.|..|+..|.+
T Consensus 1314 gmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1314 GMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHHHHHh
Confidence 666666655544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.08 E-value=4e-07 Score=87.12 Aligned_cols=416 Identities=13% Similarity=0.018 Sum_probs=261.4
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC--C--CC-cc
Q 042265 3 LNNFIKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP--Y--PS-TF 77 (490)
Q Consensus 3 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~--~~-~~ 77 (490)
++..+..||.++.+...+++....- + .....|+.+...|. -.|.-..|..+++... + |+ +.
T Consensus 329 Lt~al~~~g~f~~lae~fE~~~~~~-~---~~~e~w~~~als~s----------aag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 329 LTFALSRCGQFEVLAEQFEQALPFS-F---GEHERWYQLALSYS----------AAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhh-h---hhHHHHHHHHHHHH----------HhccchHHHHHHHhhcccccCCCcch
Confidence 4567889999998888888777654 4 57778888887887 6888889999987643 2 32 33
Q ss_pred cHHHHHHHHH-cCCCchhHHHHHHHhhhC--CC--CCCcccHHHHHHHHhcc-----------CCcHHHHHHHHHHHHhC
Q 042265 78 SYNTIIRAHT-LFSSPLNAVVLFSQMRTV--SI--PPDFYSFPFLLRACSQL-----------CSHSLAQTIHSQVLKLG 141 (490)
Q Consensus 78 ~~~~li~~~~-~~g~~~~A~~~~~~m~~~--~~--~p~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~g 141 (490)
.+-..-..|. +.+..+++++.-.+.... +. ......|..+.-+|... ....++.+.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333333343 346667777666665541 11 12233444444444321 12346778888888876
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHHhccc----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHH
Q 042265 142 FICDVFVLNSLMHVYCVFHRLRDAQELFDEILY----RDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTL 214 (490)
Q Consensus 142 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l 214 (490)
+-|+.+...+.--|+..++++.|.+..++..+ -+...|..+.-.+...+++.+|+.+.+..... |-.....-
T Consensus 475 -~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 -PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred -CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 44555555556667888999999999888744 37789999999999999999999998876533 22222222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCChhhHHHHHHHHH--
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLD-IKPDNIALVSALSACARLGELEQGKNIHRYIELN--QIRVDSFLSTGLVDFYA-- 289 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~-- 289 (490)
+..-..-++.++++.....+..-- -.+.. ...++-....+....+.-. .......++..+.....
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 333344677777777666654310 00000 0111111111111111100 10111222222222111
Q ss_pred -hcCCHHHHHHHHhccCCCC------eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 042265 290 -KCGYINTAIEIFESSQEKN------LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDE 362 (490)
Q Consensus 290 -~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 362 (490)
+.-..+..+..+.....|+ ...|......+.+.+..++|...+.+..... .-....|......+...|.+++
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred hhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHH
Confidence 1111111111111112222 1245566677888899999998888877642 2344566666667778899999
Q ss_pred HHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHH--HHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042265 363 ARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALE--MIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHV 438 (490)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 438 (490)
|.+.|..... -.|.++....++..++.+.|+..-|.. ++..+. ..| +...|..+...+.+.|+.+.|.+.|..+
T Consensus 703 A~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999998886 455567788899999999998887777 777654 444 9999999999999999999999999999
Q ss_pred HhhCCCCC
Q 042265 439 MKLKPEDG 446 (490)
Q Consensus 439 ~~~~p~~~ 446 (490)
.++.+.+|
T Consensus 781 ~qLe~S~P 788 (799)
T KOG4162|consen 781 LQLEESNP 788 (799)
T ss_pred HhhccCCC
Confidence 99888776
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.3e-09 Score=93.11 Aligned_cols=226 Identities=13% Similarity=0.058 Sum_probs=147.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHH
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIR-VDSFLSTGLVDFY 288 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 288 (490)
....+.+++...|+++.++ .+..... .|.......+...+...++-+.+..-++........ .+..+......++
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~ 112 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATIL 112 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 4445667777777766543 3333332 566555555555554434444444443333222222 2233333344556
Q ss_pred HhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCcHHHHH
Q 042265 289 AKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH----AGLVDEAR 364 (490)
Q Consensus 289 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 364 (490)
...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.+|.
T Consensus 113 ~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp CCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 6778888888888765 45566677788899999999999999999864 333 445555555432 34688999
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhh
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNV-EIAEAAAEHVMKL 441 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 441 (490)
.+|+++.+ ..++++.+.+.+..+....|++++|.+++++.. ..| ++.++..++.+....|+. +.+.+++.++...
T Consensus 188 y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999877 567788888889999999999999999988744 333 777888888888888877 7788888888889
Q ss_pred CCCCC
Q 042265 442 KPEDG 446 (490)
Q Consensus 442 ~p~~~ 446 (490)
.|+++
T Consensus 266 ~p~h~ 270 (290)
T PF04733_consen 266 NPNHP 270 (290)
T ss_dssp TTTSH
T ss_pred CCCCh
Confidence 99876
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.3e-06 Score=83.27 Aligned_cols=276 Identities=10% Similarity=0.074 Sum_probs=199.6
Q ss_pred CChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 042265 160 HRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI 239 (490)
Q Consensus 160 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 239 (490)
+.+++|.+.-++.. .+..|..+..+-.+.|.+.+|++-|-+.. |+..|..++....+.|.|++-.+++.-.++..-
T Consensus 1089 ~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 44555555544443 34579999999999999999999886654 678899999999999999999999988887766
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHH
Q 042265 240 KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGL 319 (490)
Q Consensus 240 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 319 (490)
.|... +.++-+|++.+++.+..++.. .|+......+.+-+...|.++.|.-+|.. +.-|..|...+
T Consensus 1165 E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTL 1230 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHH
Confidence 66655 478889999999887766553 57887888888999999999999988874 45688899999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHH
Q 042265 320 AMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEA 399 (490)
Q Consensus 320 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 399 (490)
...|+++.|...-++. .+..||..+-.+|...+.+..|. |... .+.....-...++.-|...|-+++.
T Consensus 1231 V~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHHH
Confidence 9999999998876654 36678988888888777665442 2211 2233444567788889999999999
Q ss_pred HHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hC-C------CCCchHHHHHHHHHhcCChHHHH
Q 042265 400 LEMIKKMPM--GGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK-LK-P------EDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 400 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
+.+++.... +.....|..+.-.|.+- ++++..+.++-.-. ++ | +....|..+...|.+-..|+.|.
T Consensus 1299 Isl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1299 ISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 999887542 22555666666666654 34554444443322 11 1 12235667777777777776664
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.7e-07 Score=84.33 Aligned_cols=191 Identities=15% Similarity=0.150 Sum_probs=118.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC--eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 042265 185 DGYVKAGDLAHARQLFDRMPFRD--AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQG 262 (490)
Q Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 262 (490)
.+-.....+.+|+.+++.+...+ ..-|..+...|...|+++.|.++|.+.- .++-.+..|.+.|+|+.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 33455667777777777666553 2346667777777777777777775431 244556677777777777
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 042265 263 KNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP 342 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 342 (490)
.++-.+.. |.......|.+-.+-+-+.|++.+|.++|-.+..|+. .|+.|-+.|..+..+++..+-... .
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~ 880 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---H 880 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---h
Confidence 66654432 3334455555556666677777777777777766653 356677777777776665543221 1
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHh
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIK 404 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (490)
-..|-..+..-+...|+...|+..|-+... |..-+.+|...+.+++|.++-+
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHh
Confidence 224455556666677777777776665544 4455556666666666665544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.9e-09 Score=93.95 Aligned_cols=246 Identities=13% Similarity=0.036 Sum_probs=168.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYI 294 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (490)
++-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. .++.+.. .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344566788988887665 322222223445567788888889877543 3333333 66666666666555544566
Q ss_pred HHHHHHHhccC-CC----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 042265 295 NTAIEIFESSQ-EK----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDE 369 (490)
Q Consensus 295 ~~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (490)
+.+..-+++.. ++ +..........+...|++++|++++..- .+.......+..+.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67776665544 32 1122222234456679999999887642 3567777888999999999999999999
Q ss_pred hHHhhCCCCCchHHHHHHhhhh----hcCCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042265 370 MESVYGVSKELKHYGCMADLLG----RAGLIEEALEMIKKMPMG--GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 443 (490)
|.+. ..| .+...+..++. -.+.+.+|..+|+++..+ +++.+.+.+..+....|++++|.++++++++.+|
T Consensus 157 ~~~~---~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQI---DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCC---SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhc---CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 9863 233 33444555443 234799999999998765 3888899999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhcCCh-HHHHHHHHHHhcC
Q 042265 444 EDGGVYKVLADVYANADRW-EDVVKIRRSLDAG 475 (490)
Q Consensus 444 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 475 (490)
.++.++..++.+....|+. +.+.+++.++++.
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999998898987 6677888887653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.4e-07 Score=83.34 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=39.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---Ce----ehHHHHHHHHHHc
Q 042265 250 LSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NL----FTWNAMLVGLAMH 322 (490)
Q Consensus 250 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~----~~~~~l~~~~~~~ 322 (490)
...+...|++++|...+++..+.. +.+...+..+..++...|++++|..++++..+. +. ..|..+...+...
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 334444555555555555554443 333444444444555555555555554443321 01 1122344445555
Q ss_pred CChHHHHHHHHHHH
Q 042265 323 GLGRLSLVYFSRMI 336 (490)
Q Consensus 323 ~~~~~A~~~~~~m~ 336 (490)
|++++|..++++..
T Consensus 200 G~~~~A~~~~~~~~ 213 (355)
T cd05804 200 GDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHHHh
Confidence 55555555555543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-06 Score=82.40 Aligned_cols=258 Identities=12% Similarity=-0.002 Sum_probs=162.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACA----RLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK 290 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 290 (490)
...+...|++++|.+.+++..+.. +.+...+.. ...+. ..+..+.+.+.+.. .....+........+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHH
Confidence 445677899999999999888753 223333332 22222 23445555555544 111112233444566778899
Q ss_pred cCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhhccCcHHHHH
Q 042265 291 CGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI-KPDG--VTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~ 364 (490)
.|++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..+..+...+...|++++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999998764 3556778888899999999999999999887532 2232 34556778889999999999
Q ss_pred HHHHHhHHhhCCCCCchHH-H--HHHhhhhhcCCHHHHHHH--H-hh---C-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 365 KLFDEMESVYGVSKELKHY-G--CMADLLGRAGLIEEALEM--I-KK---M-PMGGDVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~---~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
.++++........+..... + .+..-+...|..+.+.++ + .. . ..............++...|+.+.|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999986421111222111 1 222333334433333332 1 11 1 1111122223566668889999999999
Q ss_pred HHHHHh-hCC---C-----CCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 435 AEHVMK-LKP---E-----DGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 435 ~~~~~~-~~p---~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++.+.. ... . ........+.++...|++++|.+.+......
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999877 222 1 2334456667788999999999999887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.3e-06 Score=80.73 Aligned_cols=180 Identities=12% Similarity=0.064 Sum_probs=122.1
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC-------------CCCcccHHHHHHHHHcCCCchhHHHHH
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP-------------YPSTFSYNTIIRAHTLFSSPLNAVVLF 99 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~li~~~~~~g~~~~A~~~~ 99 (490)
.+..+|+.+.++|. +..+++-|.-.+-.|. .++ ..-......-...|..++|..+|
T Consensus 755 kS~~vW~nmA~McV----------kT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lY 823 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCV----------KTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILY 823 (1416)
T ss_pred hhhHHHHHHHHHhh----------hhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHH
Confidence 67788999999999 8888888877766553 122 22223333346779999999999
Q ss_pred HHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc-----
Q 042265 100 SQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY----- 174 (490)
Q Consensus 100 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----- 174 (490)
.+-++ |..|=..|...|.+++|.++-+.=-+. .=..||.....-+-..++.+.|++.|++...
T Consensus 824 r~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev 891 (1416)
T KOG3617|consen 824 RQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEV 891 (1416)
T ss_pred HHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHH
Confidence 99876 445555667789999998887653221 2235666677777778899999999888722
Q ss_pred ------------------CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC------------------------CCeehHH
Q 042265 175 ------------------RDVVSCNTLIDGYVKAGDLAHARQLFDRMPF------------------------RDAVSWG 212 (490)
Q Consensus 175 ------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~ 212 (490)
+|...|.-....+-..|+.+.|+.+|+.... .|..+..
T Consensus 892 ~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcY 971 (1416)
T KOG3617|consen 892 FRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACY 971 (1416)
T ss_pred HHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHH
Confidence 2444455555556678888888888877541 1344555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMM 235 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~ 235 (490)
.+.+.|-..|++.+|..+|.+.+
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Confidence 66666667777777777666543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.8e-07 Score=78.30 Aligned_cols=302 Identities=14% Similarity=0.107 Sum_probs=143.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC--CeehHH-HHHHHHHhc
Q 042265 148 VLNSLMHVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR--DAVSWG-TLVAGYAQS 221 (490)
Q Consensus 148 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~-~l~~~~~~~ 221 (490)
-+++.+..+++..++..|++++....++ +....+.+..+|....++..|...++++... ...-|. --...+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3455555566667777777776655443 3334555556666666666666666665422 111121 123344555
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042265 222 DQCEEAIQLFCNMMDLDIKPDNIALVSALSA--CARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIE 299 (490)
Q Consensus 222 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 299 (490)
+.+..|+++...|.+. |+...-..-+.+ ..+.+++..+..+.++.... .+..+.+.......+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHH
Confidence 6666666666555432 221111111111 12344444444444433221 123333333333445555555555
Q ss_pred HHhccCCC----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-----HHHHhhccCcHHHHHHHHHHh
Q 042265 300 IFESSQEK----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILG-----ALVGCSHAGLVDEARKLFDEM 370 (490)
Q Consensus 300 ~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~ 370 (490)
-|+...+- ....||..+ +..+.|+++.|++...++++.|++..+. ++. .+.+ ...|+. ..+....
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDv-rsvgNt---~~lh~Sa 239 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDV-RSVGNT---LVLHQSA 239 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCch-hcccch---HHHHHHH
Confidence 55544431 223333332 2233455555555555555554331110 000 0000 000000 0000000
Q ss_pred HHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 371 ESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
-...+|.-...+.+.|+++.|.+.+..|+.+. |+.|+..+.-.- ..+++.+..+-+.-+++++|-.+
T Consensus 240 --------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ 310 (459)
T KOG4340|consen 240 --------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPP 310 (459)
T ss_pred --------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCCh
Confidence 00112222333456677777777777776433 666666554322 23456666666666777777777
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 042265 447 GVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
.+|..++..|++..-++-|..++-
T Consensus 311 ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHh
Confidence 778777778887777777776654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.3e-06 Score=73.00 Aligned_cols=380 Identities=10% Similarity=0.005 Sum_probs=220.6
Q ss_pred HHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHH-HHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042265 83 IRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLR-ACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 83 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 161 (490)
+.-+..++++..|+.+++.-...+-. ........|. ++...|++++|...+..+.+.. .++...+..|.-++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 77788889999999999887654321 2224455444 4567899999999999988865 6778888888888888999
Q ss_pred hHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042265 162 LRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKP 241 (490)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 241 (490)
+.+|..+-.+..+ ++..-..|...-.+.++-++-..+-+.+.... .---+|.......-.+.+|+++|......+ |
T Consensus 107 Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ 182 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN--P 182 (557)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--h
Confidence 9999998877543 33344455566677888777777666665432 233345555555567999999999987653 5
Q ss_pred CHHHHHHH-HHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHH-------
Q 042265 242 DNIALVSA-LSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWN------- 313 (490)
Q Consensus 242 ~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------- 313 (490)
.-...+.- .-+|.+..-++-+.++++-..+.- +.++...+.......+.=+-..|..-.+++.+.-...|.
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 55555443 445677777888888888777653 444444454444444432222333333332221110111
Q ss_pred ----------------------------HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-----hccCcH
Q 042265 314 ----------------------------AMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGC-----SHAGLV 360 (490)
Q Consensus 314 ----------------------------~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~g~~ 360 (490)
.++--|.+.+++++|..+.+++.. ..|-......+..+- ......
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 112223444555555555444321 122222222221111 111123
Q ss_pred HHHHHHHHHhHHhhCCCCCc-hHHHHHHhhhhhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042265 361 DEARKLFDEMESVYGVSKEL-KHYGCMADLLGRAGLIEEALEMIKKMPM--GGDVFVWSGLLGGCRIHGNVEIAEAAAEH 437 (490)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 437 (490)
.-|.+.|+..-+. +...|. .--.++...+.-..++++.+.+++.+.. ..|......+..+++..|++.+|+++|-+
T Consensus 340 KiAqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 340 KIAQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhh
Confidence 3344444443332 222221 1223344444445566666666665542 11333344567777888888888888888
Q ss_pred HHhhCCCCCchHH-HHHHHHHhcCChHHHHHHHHHH
Q 042265 438 VMKLKPEDGGVYK-VLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 438 ~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m 472 (490)
+...+-.+..+|. .|+++|.++|..+-|+.++-++
T Consensus 419 is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 419 ISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred hcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 7765534444554 5678888888888888877654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.6e-06 Score=89.48 Aligned_cols=321 Identities=12% Similarity=0.013 Sum_probs=207.8
Q ss_pred HHHhcCChHHHHHHHHhccc----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CC---e-----ehHHHHHHHH
Q 042265 155 VYCVFHRLRDAQELFDEILY----RDVVSCNTLIDGYVKAGDLAHARQLFDRMPF----RD---A-----VSWGTLVAGY 218 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~---~-----~~~~~l~~~~ 218 (490)
.....|+++.+...++.+.. .++.........+...|+++++...+..... .+ . .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777776621 2333334445556778999998888875421 11 1 1222334556
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDIKPDN----IALVSALSACARLGELEQGKNIHRYIELNQI---RV--DSFLSTGLVDFYA 289 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 289 (490)
...|++++|...+++..+.....+. ...+.+...+...|++++|...+.+...... .+ .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999999999988763212221 2345566667789999999999888765411 11 1234456677888
Q ss_pred hcCCHHHHHHHHhccCC-------CC----eehHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHh
Q 042265 290 KCGYINTAIEIFESSQE-------KN----LFTWNAMLVGLAMHGLGRLSLVYFSRMIEA--RIKP--DGVTILGALVGC 354 (490)
Q Consensus 290 ~~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p--~~~~~~~l~~~~ 354 (490)
..|+++.|...+++... ++ ...+..+...+...|++++|...+.+.... ...+ ....+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998876442 11 122344556677789999999998887553 1112 223444455667
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCCchHH-----HHHHhhhhhcCCHHHHHHHHhhCCCCC--CH----HHHHHHHHHHH
Q 042265 355 SHAGLVDEARKLFDEMESVYGVSKELKHY-----GCMADLLGRAGLIEEALEMIKKMPMGG--DV----FVWSGLLGGCR 423 (490)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~~l~~~~~ 423 (490)
...|++++|.+.++.+............+ ...+..+...|+.+.|.+++....... .. ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78999999999998886531111111111 112234456899999999987754321 11 12345667788
Q ss_pred hcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 424 IHGNVEIAEAAAEHVMKLK------PEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..|++++|...++++.... +....+...++.++.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998731 112235677888999999999999999888754
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.6e-06 Score=71.55 Aligned_cols=311 Identities=10% Similarity=0.009 Sum_probs=197.1
Q ss_pred cccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHH---HHHhccCCcHHHHHHHHHHHHhCCCCchhH-HHH
Q 042265 76 TFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLL---RACSQLCSHSLAQTIHSQVLKLGFICDVFV-LNS 151 (490)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~ 151 (490)
+.-.--+...+..+|++..|+..|....+- |+..|.++. ..|...|+...|..=+...++. .||... ...
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ 111 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ 111 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence 334445677788888888888888888763 344444443 4566678888888777777774 566432 233
Q ss_pred HHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHH
Q 042265 152 LMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 152 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
-...+.+.|.+++|..-|+.+++.++.. +....++.+.--.++-. .....+..+...|+...|+...
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~------------~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHW------------VLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHH------------HHHHHHHHHhcCCchhhHHHHH
Confidence 4456778888888888888886553311 00111111111111111 1223344455667777777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCee-
Q 042265 232 CNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLF- 310 (490)
Q Consensus 232 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 310 (490)
..+++.. +.|...|..-..+|...|++..|+.-++...+.. ..+...+-.+-..+...|+.+.++..+++..+-|+.
T Consensus 179 ~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 179 THLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 7777642 3466666666777777777777776666666554 444555555666667777777777777666553332
Q ss_pred -----hHHHH---------HHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 311 -----TWNAM---------LVGLAMHGLGRLSLVYFSRMIEARIKPDGVT---ILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 311 -----~~~~l---------~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
.|-.+ +......++|.++++..+...+......... +..+-.++...|++.+|++.-.++..
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~- 335 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD- 335 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-
Confidence 11111 2234567888888888888877643322333 33444556778999999999999886
Q ss_pred hCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC
Q 042265 374 YGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG 409 (490)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (490)
-.+.|..++..-..+|.-...++.|+.-|+.....
T Consensus 336 -~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 336 -IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred -cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 44556888888888999999999999999887643
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.4e-05 Score=69.21 Aligned_cols=395 Identities=11% Similarity=0.069 Sum_probs=242.0
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY---PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPP 109 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 109 (490)
-|...|+.||.-+. .. .+++++..++++.. -+...|..-|....+.++++....+|.+....- -
T Consensus 18 ~di~sw~~lire~q----------t~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--L 84 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQ----------TQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--L 84 (656)
T ss_pred ccHHHHHHHHHHHc----------cC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--h
Confidence 78889999999998 44 89999999998752 356789999999999999999999999987653 4
Q ss_pred CcccHHHHHHHHhcc-CCcHH----HHHHHHHHH-HhCCCC-chhHHHHHHHH---------HHhcCChHHHHHHHHhcc
Q 042265 110 DFYSFPFLLRACSQL-CSHSL----AQTIHSQVL-KLGFIC-DVFVLNSLMHV---------YCVFHRLRDAQELFDEIL 173 (490)
Q Consensus 110 ~~~~~~~ll~~~~~~-~~~~~----a~~~~~~~~-~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~~~ 173 (490)
+...|..-+.---+. ++... ..+.|+-.. +.|+.+ +...|+..+.. |....+++...+++++++
T Consensus 85 nlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 85 NLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred hHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 455666666533222 33322 333344333 344433 33445555543 333445677788888874
Q ss_pred cC----------CchhHHHHHHHH-------HhcCCHHHHHHHHhhCCC------CCe---------------ehHHHHH
Q 042265 174 YR----------DVVSCNTLIDGY-------VKAGDLAHARQLFDRMPF------RDA---------------VSWGTLV 215 (490)
Q Consensus 174 ~~----------~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~------~~~---------------~~~~~l~ 215 (490)
.. |-..|..=|+.. -+..++..|.+++++... .+. ..|-.+|
T Consensus 165 ~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I 244 (656)
T KOG1914|consen 165 VTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWI 244 (656)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHH
Confidence 42 222222222211 133445556666655430 000 1133333
Q ss_pred HHHHhcCC--------hhHHHHHHHHH-HhCCCCCCHHHHHH-H----HHHHHccCC-------hHHHHHHHHHHHHcCC
Q 042265 216 AGYAQSDQ--------CEEAIQLFCNM-MDLDIKPDNIALVS-A----LSACARLGE-------LEQGKNIHRYIELNQI 274 (490)
Q Consensus 216 ~~~~~~g~--------~~~A~~~~~~m-~~~~~~p~~~~~~~-l----~~~~~~~~~-------~~~a~~~~~~~~~~~~ 274 (490)
.--...+- .....-.+++. .-.+..|+...... . -..+...|+ -+++..+++.....-.
T Consensus 245 ~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~ 324 (656)
T KOG1914|consen 245 KWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLL 324 (656)
T ss_pred HHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 22111110 01122222222 11233343332111 1 112222333 3455556665554433
Q ss_pred CCChhhHHHHHHHHHhcC---CHHHHHHHHhccCC----CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHH
Q 042265 275 RVDSFLSTGLVDFYAKCG---YINTAIEIFESSQE----KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP-DGVT 346 (490)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~ 346 (490)
..+..+|..+.+.--..- ..+.....++++.. .-..+|...|..-.+..-...|..+|.+..+.+..+ ....
T Consensus 325 ~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfV 404 (656)
T KOG1914|consen 325 KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFV 404 (656)
T ss_pred HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhH
Confidence 334444444433221111 24555555555443 345678888888888899999999999999988777 6677
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-----CHHHHHHHHHH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-----DVFVWSGLLGG 421 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~ 421 (490)
..+++..+| .++.+-|.++|+.-.+. ...++.--...++-+...++-..|..+|++...+. ...+|..++..
T Consensus 405 a~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~y 481 (656)
T KOG1914|consen 405 AAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEY 481 (656)
T ss_pred HHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHH
Confidence 788888766 68899999999998884 44445555677888889999999999999876542 66899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p 443 (490)
-..-|+...+.++-++.....|
T Consensus 482 ES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 482 ESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHhcccHHHHHHHHHHHHHhcc
Confidence 9999999999999999888666
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-07 Score=79.90 Aligned_cols=182 Identities=12% Similarity=-0.043 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCCC---Ce---ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHH
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQEK---NL---FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDG--VTILG 349 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ 349 (490)
...+..++..+.+.|+++.|...|+++.+. ++ ..+..+..++...|++++|...++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 344455555566666666666666655432 11 24455566666777777777777777664321111 12333
Q ss_pred HHHHhhc--------cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042265 350 ALVGCSH--------AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGG 421 (490)
Q Consensus 350 l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 421 (490)
+..++.. .|+.++|.+.++.+.+. .+.+...+..+..... ..... ......+...
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~~ 175 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVARF 175 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHHH
Confidence 3333332 26788888888888763 2223222222211100 00000 0112245667
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDG---GVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+.+.|++++|+..++++++..|+++ .++..++.++.+.|++++|..+++.+....
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8899999999999999999877654 688999999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-05 Score=84.72 Aligned_cols=360 Identities=11% Similarity=-0.063 Sum_probs=211.3
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc-ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 042265 80 NTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF-YSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCV 158 (490)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 158 (490)
......+...|++.+|...+...... +.. .............|+++.+..+++.+.......+..........+..
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 33445566667766666544433211 000 01111222334456777766666654221112222233344455566
Q ss_pred cCChHHHHHHHHhccc---C-C---c-----hhHHHHHHHHHhcCCHHHHHHHHhhCCC--C--Ce----ehHHHHHHHH
Q 042265 159 FHRLRDAQELFDEILY---R-D---V-----VSCNTLIDGYVKAGDLAHARQLFDRMPF--R--DA----VSWGTLVAGY 218 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~~---~-~---~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~ 218 (490)
.|++++|...++.... . + . .....+...+...|++++|...+++... + +. ...+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 7888887777765521 1 1 1 1112223445678888888887776432 1 11 2345666677
Q ss_pred HhcCChhHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC---ChhhHHHHHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDI---KPD--NIALVSALSACARLGELEQGKNIHRYIELN----QIRV---DSFLSTGLVD 286 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~ 286 (490)
...|++++|...+.+.....- .+. ...+..+...+...|+++.|...+++.... +... ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 888999999988888764211 111 234455666778889999998888776553 2111 1233445566
Q ss_pred HHHhcCCHHHHHHHHhccCC------C--CeehHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHH
Q 042265 287 FYAKCGYINTAIEIFESSQE------K--NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR--IKPDGV--TI--LGALV 352 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~--~~--~~l~~ 352 (490)
.+...|++++|...+++... + ....+..+...+...|++++|...+.+..... ...... .. ...+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 77778999999888876542 1 12234445567778899999999888875421 111110 00 11123
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCch----HHHHHHhhhhhcCCHHHHHHHHhhCCC----CC----CHHHHHHHHH
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKELK----HYGCMADLLGRAGLIEEALEMIKKMPM----GG----DVFVWSGLLG 420 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~ 420 (490)
.+...|+.+.|...+...... . ..... .+..+..++...|++++|...+++... .+ ...+...+..
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~-~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~ 739 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKP-E-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ 739 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCC-C-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 344578999999888776542 1 11111 134567778889999999998887542 11 2345666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
++...|+.++|...+.++++....
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCc
Confidence 789999999999999999994443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-07 Score=78.29 Aligned_cols=118 Identities=7% Similarity=0.082 Sum_probs=68.4
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 042265 357 AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGC-RIHGN--VEIA 431 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~-~~~~~--~~~a 431 (490)
.++.+++...++...+ ..+.+...|..+...|...|++++|...+++.. ..| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4444555555555554 344555566666666666666666666665533 223 555555555542 44454 3666
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 432 EAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.++++++++.+|+++.++..++..+.+.|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666666666666666666666666666666666666665543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-07 Score=92.04 Aligned_cols=202 Identities=20% Similarity=0.110 Sum_probs=150.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC--------CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 042265 275 RVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK--------NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVT 346 (490)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 346 (490)
|.....|...|......++.++|+++.+++... -...|-++++.....|.-+...++|+++.+.. -.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 455566777777777888888888888776642 23467777777777777777788888887641 12345
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC---CHHHHHHHHHHH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG---DVFVWSGLLGGC 422 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~ 422 (490)
|..|...|.+.+..++|.++++.|.+.++ .....|..++..+.+.++-++|.+++++.. .-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 67777778888888888888888888544 566678888888888888888888887632 223 555666666677
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCC
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKN 480 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 480 (490)
.+.|+.+++..+|+..+.-.|.....|+.+++.-.+.|+.+.++.+|++....++.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 7888888888888888888888888888888888888888888888888887776653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-06 Score=77.71 Aligned_cols=225 Identities=11% Similarity=0.047 Sum_probs=118.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 042265 211 WGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDN-IALVSALSACARLG-ELEQGKNIHRYIELNQIRVDSFLSTGLVDFY 288 (490)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 288 (490)
+..+-..+...++.++|+.++.++++. .|+. ..|+....++...| ++++++..++.+.+.. +.+..+|+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~----- 111 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHH----- 111 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHH-----
Confidence 334444445555666666666666553 2322 23333333333444 3455555555555443 233333333
Q ss_pred HhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 042265 289 AKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLG--RLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 289 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
....+.+.|+. ++++.+++++.+...+ |..+|.....++...|+++++++.
T Consensus 112 --------------------------R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~ 164 (320)
T PLN02789 112 --------------------------RRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEY 164 (320)
T ss_pred --------------------------HHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22222233321 3455555555554322 445555555555555666666666
Q ss_pred HHHhHHhhCCCCCchHHHHHHhhhhhc---CCH----HHHHHHHhh-CCCCC-CHHHHHHHHHHHHhc----CCHHHHHH
Q 042265 367 FDEMESVYGVSKELKHYGCMADLLGRA---GLI----EEALEMIKK-MPMGG-DVFVWSGLLGGCRIH----GNVEIAEA 433 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~----~~~~~a~~ 433 (490)
++++.+ ..+.+...|+.....+.+. |+. ++.+.+..+ +...| +...|+.+...+... ++..+|.+
T Consensus 165 ~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 165 CHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred HHHHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 666665 2333444444444433332 222 344555433 33444 666676666666652 34456777
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcC------------------ChHHHHHHHHHH
Q 042265 434 AAEHVMKLKPEDGGVYKVLADVYANAD------------------RWEDVVKIRRSL 472 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m 472 (490)
.+.++.+..|+++.++..|+..|+... ..++|.++++.+
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 788777777887778888888887532 246788888887
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-06 Score=87.02 Aligned_cols=233 Identities=13% Similarity=0.092 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC--------CchhHHHHHHHHHhcCCHHHHHHHH
Q 042265 129 LAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR--------DVVSCNTLIDGYVKAGDLAHARQLF 200 (490)
Q Consensus 129 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~ 200 (490)
.+.+ |+.+.... |.+...|-..|......+++++|.++.++.+.. -...|.++++.-...|.-+...++|
T Consensus 1443 saeD-ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAED-FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHH-HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 4444 34444443 666778999999999999999999999998543 3357888888888888889999999
Q ss_pred hhCCCC-C-eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC
Q 042265 201 DRMPFR-D-AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQI-RVD 277 (490)
Q Consensus 201 ~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~ 277 (490)
+++.+- | ...|..|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++.+.-. ...
T Consensus 1521 eRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1521 ERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 997754 3 457889999999999999999999999886 235667888889999999999999999999887621 224
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDG--VTILGALV 352 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~ 352 (490)
.....-.++.-.+.|+.+.++.+|+..... -...|+..+..-.++|+.+.+..+|++....++.|-. ..|...+.
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLe 1679 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLE 1679 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHH
Confidence 566677777888999999999999987753 4568999999999999999999999999998877654 23444444
Q ss_pred HhhccCcHHHHH
Q 042265 353 GCSHAGLVDEAR 364 (490)
Q Consensus 353 ~~~~~g~~~~a~ 364 (490)
.--..|+-..++
T Consensus 1680 yEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1680 YEKSHGDEKNVE 1691 (1710)
T ss_pred HHHhcCchhhHH
Confidence 333445544333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.9e-07 Score=72.53 Aligned_cols=122 Identities=9% Similarity=0.008 Sum_probs=86.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-C
Q 042265 330 VYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-M 408 (490)
Q Consensus 330 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 408 (490)
.++++..+. .|+. +..+...+...|++++|...|+.+.. -.+.+...+..+..++.+.|++++|...|++.. .
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345555443 3432 44456666778888888888888776 455567777777778888888888888887754 2
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 409 GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 409 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
.| ++..+..+..++...|++++|+..++++++..|+++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 33 77777888888888888888888888888888888777766665554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.6e-06 Score=80.60 Aligned_cols=250 Identities=13% Similarity=0.036 Sum_probs=181.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYI 294 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (490)
..-+.+.|+..+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+.. +.+..+...|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 345677888889988888888764 3356688888888888888888888888888876 67788888888889988888
Q ss_pred HHHHHHHhccCCCC-eehHHHHH---------HHHHHcCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHhhccCcHHHH
Q 042265 295 NTAIEIFESSQEKN-LFTWNAML---------VGLAMHGLGRLSLVYFSR-MIEARIKPDGVTILGALVGCSHAGLVDEA 363 (490)
Q Consensus 295 ~~A~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~A~~~~~~-m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 363 (490)
..|.+.+++-.... ...|.... ..+..........++|-+ ....+..+|+.....|.-.|.-.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88888887542210 00000000 011111122333444444 44555557777777887788889999999
Q ss_pred HHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 364 RKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
...|+.+.. --|-|..+||.|.-.++...+.++|+..|++.. .+| -+.....|.-+|...|.+++|...|-.++.+
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999997 556688899999999999999999999998864 455 6677888999999999999999999999885
Q ss_pred CCCC-----C-----chHHHHHHHHHhcCChHHHHHH
Q 042265 442 KPED-----G-----GVYKVLADVYANADRWEDVVKI 468 (490)
Q Consensus 442 ~p~~-----~-----~~~~~l~~~~~~~g~~~~A~~~ 468 (490)
.+.+ . .+|..|=.++.-.++.|-+.++
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 5441 1 3666666666667776644443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.5e-07 Score=72.82 Aligned_cols=107 Identities=9% Similarity=-0.101 Sum_probs=91.5
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
.++++..+ ..|+ .+..+...+...|++++|...|+... ..| +...+..+..++...|++++|+..|+++++.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555554 2233 35567888899999999999999865 344 88999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 443 PEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
|+++.++..++.++...|++++|...+++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00024 Score=65.97 Aligned_cols=395 Identities=11% Similarity=0.085 Sum_probs=223.1
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 042265 73 YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSL 152 (490)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 152 (490)
+-|+.+|+.||+-+..+ .++++.+.|+++... .+-....|..-|..-.+.++++..+.+|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 45899999999987766 999999999999864 34455678888999999999999999999988763 456666666
Q ss_pred HHHHHh-cCChHHHH----HHHHhccc------CCchhHHHHHHH---------HHhcCCHHHHHHHHhhCCCC------
Q 042265 153 MHVYCV-FHRLRDAQ----ELFDEILY------RDVVSCNTLIDG---------YVKAGDLAHARQLFDRMPFR------ 206 (490)
Q Consensus 153 i~~~~~-~g~~~~A~----~~~~~~~~------~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~------ 206 (490)
+.--.+ .|+...+. +.|+-... .+-..|+..+.. +....+++...+++.++...
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 553332 33333322 22222211 133456655554 34556778888888887632
Q ss_pred ----CeehHHHHHHHH-------HhcCChhHHHHHHHHHHh--CCCCCCHHH---------------HHHHHHHHHccCC
Q 042265 207 ----DAVSWGTLVAGY-------AQSDQCEEAIQLFCNMMD--LDIKPDNIA---------------LVSALSACARLGE 258 (490)
Q Consensus 207 ----~~~~~~~l~~~~-------~~~g~~~~A~~~~~~m~~--~~~~p~~~~---------------~~~l~~~~~~~~~ 258 (490)
|-..|..=|+.. -+...+..|.++++++.. .|..-...+ |..+|.-- +.+.
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksNp 251 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcCC
Confidence 112222222211 123345566677766643 233211111 11111110 1110
Q ss_pred hH---------HHHHHHHHHHH-cCCCCChhhH-----HHHHHHHHhcCC-------HHHHHHHHhccCCC----CeehH
Q 042265 259 LE---------QGKNIHRYIEL-NQIRVDSFLS-----TGLVDFYAKCGY-------INTAIEIFESSQEK----NLFTW 312 (490)
Q Consensus 259 ~~---------~a~~~~~~~~~-~~~~~~~~~~-----~~l~~~~~~~~~-------~~~A~~~~~~~~~~----~~~~~ 312 (490)
+. ...-++++... .+..|+.... ...-+.+...|+ .+++..+++..... +...|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01111111111 1222221110 011112222333 23333344333221 11222
Q ss_pred HHHHHHHHHc---CChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-CchHHHHHH
Q 042265 313 NAMLVGLAMH---GLGRLSLVYFSRMIEAR-IKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSK-ELKHYGCMA 387 (490)
Q Consensus 313 ~~l~~~~~~~---~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 387 (490)
..+..---.. +..+.....++++...- ..| ..+|..++....+..-++.|..+|.++.+. +..+ ++.++++++
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALM 409 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHH
Confidence 2222111111 12445555666665532 333 346677777777778888888999888886 5555 666777777
Q ss_pred hhhhhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCC-CCchHHHHHHHHHhcCCh
Q 042265 388 DLLGRAGLIEEALEMIKK-MPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL--KPE-DGGVYKVLADVYANADRW 462 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~-~~~~~~~l~~~~~~~g~~ 462 (490)
.-|| .++.+-|.++|+- ++..| ++.-....+..+...++-..+..+|++++.. .|+ ...+|..++.--..-|+.
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 7664 5778888888886 44445 4444456677777888888888899988874 332 235788888888888998
Q ss_pred HHHHHHHHHHhcC
Q 042265 463 EDVVKIRRSLDAG 475 (490)
Q Consensus 463 ~~A~~~~~~m~~~ 475 (490)
..+.++-+++...
T Consensus 489 ~si~~lekR~~~a 501 (656)
T KOG1914|consen 489 NSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888777654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.4e-05 Score=77.37 Aligned_cols=422 Identities=14% Similarity=0.020 Sum_probs=246.4
Q ss_pred hHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCC-CCCCc
Q 042265 36 ILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVS-IPPDF 111 (490)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~ 111 (490)
..|+.|...|. ...+...|.+.|+..- ..+...+......|++..+++.|..+.-..-+.. ...-.
T Consensus 493 paf~~LG~iYr----------d~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 493 PAFAFLGQIYR----------DSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK 562 (1238)
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence 36888888888 6668888999988654 4567788889999999999999998843332221 00011
Q ss_pred ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchh-HHH--HHHHHH
Q 042265 112 YSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVS-CNT--LIDGYV 188 (490)
Q Consensus 112 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~--l~~~~~ 188 (490)
..|....-.+...++...+..-|+...+.. |.|...|..++.+|.+.|++..|.++|.+...-++.. |.. .....+
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC 641 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence 123334444667788889999999988876 7788899999999999999999999998875543332 222 223356
Q ss_pred hcCCHHHHHHHHhhCCCC----------CeehHHHHHHHHHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHH
Q 042265 189 KAGDLAHARQLFDRMPFR----------DAVSWGTLVAGYAQSDQCEEAIQLFCNMMD-------LDIKPDNIALVSALS 251 (490)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~l~~ 251 (490)
..|.+++|...+...... -..++-.+...+.-.|-..+|..++++-++ .....+...+-.+-.
T Consensus 642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd 721 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD 721 (1238)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Confidence 778888888887765421 122333333333333433344444333221 111111112211111
Q ss_pred HHHc---cC-Ch--HHHHHH-HHHHHHcCC--------------------CCChhhHHHHHHHHHh----c----CCHHH
Q 042265 252 ACAR---LG-EL--EQGKNI-HRYIELNQI--------------------RVDSFLSTGLVDFYAK----C----GYINT 296 (490)
Q Consensus 252 ~~~~---~~-~~--~~a~~~-~~~~~~~~~--------------------~~~~~~~~~l~~~~~~----~----~~~~~ 296 (490)
+|.- .. ++ .....+ +.+....+. ..+...|..|+..|.+ . .+...
T Consensus 722 ac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 722 ACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 1110 00 00 000001 111111111 1123334344443333 1 12235
Q ss_pred HHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 297 AIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 297 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
|...+.+..+ .+...|+.|.-. ...|.+.-|...|-+-+... +-...+|..+...+.+..+++.|...|...+.
T Consensus 802 Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS- 878 (1238)
T KOG1127|consen 802 AIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS- 878 (1238)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh-
Confidence 5566655443 355667666544 55566766666665555432 22456677777777888899999999988886
Q ss_pred hCCCCCchHHHHHHhhhhhcCCHHHHHHHHhh-----CCCC--CCHHHHHHHHHHHHhcCCHHHHH----------HHHH
Q 042265 374 YGVSKELKHYGCMADLLGRAGLIEEALEMIKK-----MPMG--GDVFVWSGLLGGCRIHGNVEIAE----------AAAE 436 (490)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~--~~~~~~~~l~~~~~~~~~~~~a~----------~~~~ 436 (490)
-.|.+...|-.........|+.-++..+|.. +... ++..-|.....--..+|+.++-+ -.++
T Consensus 879 -LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~ 957 (1238)
T KOG1127|consen 879 -LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALS 957 (1238)
T ss_pred -cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHH
Confidence 4555666665555555667888888887765 1111 13333333333344555555443 3444
Q ss_pred HHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 437 HVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 437 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
+.....|+...+|...+....+.+.+++|.+...+.
T Consensus 958 ~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 958 YYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 445578888889999999999999988888877665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-06 Score=85.92 Aligned_cols=139 Identities=12% Similarity=0.027 Sum_probs=92.2
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHH
Q 042265 308 NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD-GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCM 386 (490)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 386 (490)
++..+..|.....+.|++++|+.+++...+. .|+ ......+...+.+.+++++|...+++... ..+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3556666777777777777777777777664 443 34455566667777777777777777776 455566666667
Q ss_pred HhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 387 ADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
..++.+.|++++|.++|+++. ..| +..++..+..++...|+.++|...|+++++...+....|+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 777777777777777777755 333 4667777777777777777777777777774444433443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.67 E-value=0.00011 Score=68.13 Aligned_cols=374 Identities=14% Similarity=0.049 Sum_probs=238.3
Q ss_pred HHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 042265 84 RAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLR 163 (490)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 163 (490)
.+.+..|+++.|+.+|.+..... ++|...|+.=..+++..|++++|.+=-.+-++.. |.-..-|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHH
Confidence 45677899999999999998865 4577788888899999999999987766666654 445678999999999999999
Q ss_pred HHHHHHHhcccCC---chhHHHHHHHHHhcCCHHHHHHHHh------hCC-CC------CeehHHHHHHHHHhc------
Q 042265 164 DAQELFDEILYRD---VVSCNTLIDGYVKAGDLAHARQLFD------RMP-FR------DAVSWGTLVAGYAQS------ 221 (490)
Q Consensus 164 ~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~------~~~-~~------~~~~~~~l~~~~~~~------ 221 (490)
+|+..|.+-++.+ ...++-+..++.. +.. +.+.|. .+. .| ....|..++...-+.
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~--~~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLE--DYA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhH--HHH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999886653 3455556655511 100 111111 110 00 112333333322211
Q ss_pred -CChhHHHHHHHHHHh--------C-------CCCC---------C-------------HHHHHHHHHHHHccCChHHHH
Q 042265 222 -DQCEEAIQLFCNMMD--------L-------DIKP---------D-------------NIALVSALSACARLGELEQGK 263 (490)
Q Consensus 222 -g~~~~A~~~~~~m~~--------~-------~~~p---------~-------------~~~~~~l~~~~~~~~~~~~a~ 263 (490)
.+.+...+..-.+.. . +..| . ..-...+.++..+..+++.+.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 011111111111100 0 0111 0 112344556666667777777
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCe---e-------hHHHHHHHHHHcCChHHHHHHHH
Q 042265 264 NIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNL---F-------TWNAMLVGLAMHGLGRLSLVYFS 333 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~~~A~~~~~ 333 (490)
+-+....... .+..-++....+|...|.+..+...-+...+... . .+..+..+|.+.++++.++..|.
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 7777777664 5555666677777777777776665555443211 1 12223345666677777887777
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCc-hHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-
Q 042265 334 RMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKEL-KHYGCMADLLGRAGLIEEALEMIKKMP-MGG- 410 (490)
Q Consensus 334 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~- 410 (490)
+.....-.|+. ..+....+++....+...- +.|.. .-...-...+.+.|++..|.+.+.++. ..|
T Consensus 323 kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~ 390 (539)
T KOG0548|consen 323 KALTEHRTPDL---------LSKLKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE 390 (539)
T ss_pred HHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence 76554333322 1122334444444433322 12222 112223566788999999999998865 445
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
|...|.....+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.|++-.+..
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999876654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-06 Score=82.37 Aligned_cols=212 Identities=13% Similarity=0.033 Sum_probs=141.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042265 212 GTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC 291 (490)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (490)
..+...+...|-...|..++++.. .+..++.+|...|+.++|..+..+-.+. +|++..|..+++.....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 345666777777777777777653 3455667777777777777777766662 67777777777777666
Q ss_pred CCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 042265 292 GYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEME 371 (490)
Q Consensus 292 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (490)
.-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+.|....
T Consensus 471 s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 6677777777654432 11112222234677777777777665532 2234566666666667777777777777777
Q ss_pred HhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 372 SVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
. +.+.+...||.+..+|.+.|+..+|...+++..... +...|.+.+-...+.|.+++|++.+.++..
T Consensus 547 t--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 547 T--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred h--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 6 566667777888888888888888877777754332 556666777777777778888777777766
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=4e-06 Score=70.62 Aligned_cols=154 Identities=14% Similarity=0.048 Sum_probs=117.0
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 285 VDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
+-.|...|+++.+....+.+..+. . .+...++.++++..+++..+.. +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345777777777655543332221 0 1123566778888888877764 447788999999999999999999
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhh-hhcCC--HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLL-GRAGL--IEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVM 439 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 439 (490)
..|++..+ -.+.+...+..+..++ ...|+ .++|.+++++.. ..| +...+..+...+.+.|++++|+..+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988 4566778888888864 67777 599999999865 344 88899999999999999999999999999
Q ss_pred hhCCCCCchH
Q 042265 440 KLKPEDGGVY 449 (490)
Q Consensus 440 ~~~p~~~~~~ 449 (490)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9888876443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.2e-05 Score=79.53 Aligned_cols=372 Identities=14% Similarity=0.036 Sum_probs=216.9
Q ss_pred chhHHHHHHHhhhCCCCCC-cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH
Q 042265 92 PLNAVVLFSQMRTVSIPPD-FYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFD 170 (490)
Q Consensus 92 ~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 170 (490)
...|...|-+..+.. |+ ...|..|...|...-+...|.+.|+...+.+ +-+........+.|.+..+++.|..+.-
T Consensus 474 ~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 445555554444432 22 2357777777777667778888888887765 5567777888888888888888888844
Q ss_pred hcccCC-----chhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 042265 171 EILYRD-----VVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD 242 (490)
Q Consensus 171 ~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 242 (490)
...+.+ ...|....-.|.+.++...|..-|+....- |...|..++.+|...|++..|+++|.+... +.|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 443322 234445555677888888888888775532 667888899999999999999999988766 3454
Q ss_pred HH-HHHHHHHHHHccCChHHHHHHHHHHHHcC------CCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---------
Q 042265 243 NI-ALVSALSACARLGELEQGKNIHRYIELNQ------IRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--------- 306 (490)
Q Consensus 243 ~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------- 306 (490)
.. .--......+..|.+.++...+....... ...-..++..+...+.-.|-..+|..++++..+
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 33 11222233467788888888777765431 111122333333333333333333333332211
Q ss_pred --CCeehHHHHHHHHH---HcC--ChH-HHHHH-HHHHHHCCCCC--------------------CHHHHHHHHHHhhc-
Q 042265 307 --KNLFTWNAMLVGLA---MHG--LGR-LSLVY-FSRMIEARIKP--------------------DGVTILGALVGCSH- 356 (490)
Q Consensus 307 --~~~~~~~~l~~~~~---~~~--~~~-~A~~~-~~~m~~~~~~p--------------------~~~~~~~l~~~~~~- 356 (490)
.+...|-.+..+|. +.. -+. -...+ +.+....+.-| +..+|-.+...|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 12222222222211 000 000 00000 11111111111 12222222222211
Q ss_pred -------cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC
Q 042265 357 -------AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGN 427 (490)
Q Consensus 357 -------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 427 (490)
..+...|...+.+..+ -...+..+|+.|.-+ ...|.+.-|...|-+-. ..| ...+|..+...+.+..+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 1233466777777665 334455556655444 55577777777665432 333 77788888888889999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 428 VEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 428 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
++-|...+.++..++|.+...|...+......|+.-++..+|..
T Consensus 866 ~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred HHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999887777777777778888887777765
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-06 Score=81.22 Aligned_cols=193 Identities=13% Similarity=0.085 Sum_probs=98.0
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 042265 275 RVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGC 354 (490)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 354 (490)
+|-...-..+...+.+.|-...|..+|+++. .|.-.+.+|...|+..+|..+..+-.++ +|++..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 3444444556666666677777777666543 4555566666666666666666665552 55666666665554
Q ss_pred hccCcHHHHHHHHHHhHHhh--------------------------CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-
Q 042265 355 SHAGLVDEARKLFDEMESVY--------------------------GVSKELKHYGCMADLLGRAGLIEEALEMIKKMP- 407 (490)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 407 (490)
....-+++|.++.+.....- -.+....+|-.+.-+..+.++++.|.+.|....
T Consensus 468 ~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 44444555555544433210 112223333334444444445555544444422
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 408 MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 408 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
..| +...|+++..+|.+.++-.+|...++++++.+-.+..+|....-...+.|.+++|.+.+.++.+
T Consensus 548 L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 548 LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 222 4445555555555555555555555555554444444444444444455555555555554443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.4e-05 Score=65.82 Aligned_cols=226 Identities=12% Similarity=-0.012 Sum_probs=144.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH-HHHHHHHHHcCCCCChhhHHHHHHHH
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQG-KNIHRYIELNQIRVDSFLSTGLVDFY 288 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~ 288 (490)
.-.-+.++|...|.+.....-.. . |-.|....+..+.......++.+.- ..+.+.+.......+......-...|
T Consensus 43 ~d~y~~raylAlg~~~~~~~eI~---~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~ 118 (299)
T KOG3081|consen 43 LDVYMYRAYLALGQYQIVISEIK---E-GKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIY 118 (299)
T ss_pred HHHHHHHHHHHcccccccccccc---c-ccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence 33344556666665543332211 1 1123333333333333333433332 33444444444344433444445567
Q ss_pred HhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCcHHHHH
Q 042265 289 AKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH----AGLVDEAR 364 (490)
Q Consensus 289 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~ 364 (490)
+..|++++|++....... ....-.=...+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+ .+.+..|.
T Consensus 119 ~~~~~~deAl~~~~~~~~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGEN--LEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred hcCCChHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHH
Confidence 888888888888877332 222323344566778889999999999874 256777777777643 45688899
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhh
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG--GDVFVWSGLLGGCRIHGNV-EIAEAAAEHVMKL 441 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 441 (490)
-+|+++.+ ..+|++.+.+....+....|++++|..++++...+ .++.++..++..-...|.. +-..+.+.+....
T Consensus 194 yifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 194 YIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 99999987 67888888888888888999999999999886533 3888888888777777755 4456777777778
Q ss_pred CCCCC
Q 042265 442 KPEDG 446 (490)
Q Consensus 442 ~p~~~ 446 (490)
.|.++
T Consensus 272 ~p~h~ 276 (299)
T KOG3081|consen 272 HPEHP 276 (299)
T ss_pred CCcch
Confidence 88776
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.1e-06 Score=69.86 Aligned_cols=150 Identities=16% Similarity=0.121 Sum_probs=75.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC
Q 042265 316 LVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL 395 (490)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (490)
-..+...|+-+....+........ .-+.......+....+.|++..|...+++... .-++|...|+.+.-+|.+.|+
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccC
Confidence 334444444444444444332211 11222333344445555555555555555555 455555555555555555555
Q ss_pred HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHH
Q 042265 396 IEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKI 468 (490)
Q Consensus 396 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (490)
+++|..-+.+.. ..| ++...+.+...+.-.|+.+.|..++.......+.+..+-..|+.+....|++++|..+
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 555555554432 122 4555555555555555555555555555555555555555555555555555555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.7e-06 Score=82.54 Aligned_cols=233 Identities=10% Similarity=0.045 Sum_probs=127.1
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042265 176 DVVSCNTLIDGYVKAGDLAHARQLFDRMPF--R-DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSA 252 (490)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 252 (490)
+...+..|+..+...+++++|.++.+.... | ....|-.+...+...++.+++..+ .+ +..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhh
Confidence 344555566666666666666666554332 1 233344444445555554443333 11 111
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHH
Q 042265 253 CARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSL 329 (490)
Q Consensus 253 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 329 (490)
.....++..+..++..+... ..+...+..+..+|-+.|+.++|...++++.+ .|+.+.|.+...|... +.++|.
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 22222232223333333332 22333555566666666666666666666554 2455566666666666 666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC
Q 042265 330 VYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG 409 (490)
Q Consensus 330 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (490)
+++.+.+.. +...+++..+.++|.++.. ..+.+...+-.+..... ..+...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~------------~~~~~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVL------------GHREFT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHH------------hhhccc
Confidence 666555432 3344566666666666665 33333333222222111 111111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 410 GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 410 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
.-+.++..+-..|...+++++++.+++.+++.+|.|..+...++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 145566677778888999999999999999999999989999988887
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.7e-05 Score=68.01 Aligned_cols=139 Identities=12% Similarity=0.035 Sum_probs=92.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042265 179 SCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSD-QCEEAIQLFCNMMDLDIKPDNIALVSALSACA 254 (490)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 254 (490)
++..+-..+...+..++|+.+.+++... +..+|+....++...| ++++++..++++.+... -+..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHH
Confidence 4555666677888999999999987644 4456666666777777 67999999999988653 34445665555555
Q ss_pred ccCCh--HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHH
Q 042265 255 RLGEL--EQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGL 319 (490)
Q Consensus 255 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~ 319 (490)
+.|+. +++..+++.+.+.. +-+..+|....-++...|+++++++.++++.+. |..+|+.....+
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl 186 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI 186 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence 55552 56677777777665 556666666666666666666666666665542 344555544443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.4e-07 Score=53.50 Aligned_cols=32 Identities=44% Similarity=0.678 Sum_probs=22.2
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHHhc
Q 042265 141 GFICDVFVLNSLMHVYCVFHRLRDAQELFDEI 172 (490)
Q Consensus 141 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 172 (490)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777766665
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-07 Score=53.03 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=16.7
Q ss_pred CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC
Q 042265 375 GVSKELKHYGCMADLLGRAGLIEEALEMIKKM 406 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (490)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.9e-05 Score=66.52 Aligned_cols=150 Identities=15% Similarity=0.078 Sum_probs=76.9
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042265 82 IIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 161 (490)
+-..+...|+-+....+....... .+-|....+..+....+.|++..|...+.+..... ++|..+|+.+.-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence 344444455555544444443221 12222333345555555555555555555555543 5555555555555555555
Q ss_pred hHHHHHHHHhccc---CCchhHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhcCChhHHHHHHHH
Q 042265 162 LRDAQELFDEILY---RDVVSCNTLIDGYVKAGDLAHARQLFDRMP---FRDAVSWGTLVAGYAQSDQCEEAIQLFCN 233 (490)
Q Consensus 162 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 233 (490)
++.|..-|.+..+ .++...+.+.-.+.-.||++.|..++.... ..|...-..+.......|++++|.++...
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 5555555555422 244455555555555555655555554432 12455555566666666666666655443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-05 Score=70.05 Aligned_cols=179 Identities=12% Similarity=-0.067 Sum_probs=83.1
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChh---h
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD-N---IALVSALSACARLGELEQGKNIHRYIELNQIRVDSF---L 280 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~ 280 (490)
...+..++..+...|++++|...|+++.... |+ . ..+..+..++...|++++|...++.+.+.. +.+.. +
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 109 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYA 109 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHH
Confidence 3445555555566666666666666555432 21 1 234445555556666666666666665543 11111 2
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHhccCCCCee---hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 042265 281 STGLVDFYAKC--------GYINTAIEIFESSQEKNLF---TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILG 349 (490)
Q Consensus 281 ~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 349 (490)
+..+..++.+. |++++|.+.|+++.+.++. .+..+... ..+... . ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~--------------~~~~~~---~-~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM--------------DYLRNR---L-AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH--------------HHHHHH---H-HHHHHH
Confidence 33333334332 4455555555554432111 11111000 000000 0 000112
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 350 ALVGCSHAGLVDEARKLFDEMESVYGVSK-ELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
+...+.+.|++++|...++.+.+.+...| ....+..++.++...|++++|..+++.+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33445566666666666666665322112 23455666666666666666666665543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.6e-06 Score=68.66 Aligned_cols=98 Identities=18% Similarity=0.078 Sum_probs=56.0
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHh
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRI 424 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~ 424 (490)
...+...+...|++++|.+.++.+.. ..+.+...+..+...+...|++++|..++++.. ..| +...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 44444555566666666666666655 234455555556666666666666666665542 222 45555555556666
Q ss_pred cCCHHHHHHHHHHHHhhCCCCC
Q 042265 425 HGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 425 ~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.|++++|...++++++..|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENP 119 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccc
Confidence 6666666666666666666554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.6e-05 Score=77.99 Aligned_cols=130 Identities=11% Similarity=0.066 Sum_probs=83.7
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042265 275 RVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--K-NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGAL 351 (490)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 351 (490)
+.+...+..|.......|.+++|..+++...+ | +......++..+.+.+++++|+..+++....... +......+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence 45566666777777777777777777776654 3 3345556666677777777777777777665321 334455555
Q ss_pred HHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 352 VGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 352 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
.++.+.|++++|..+|+++.. ..+.+..++..+...+...|+.++|...|++..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566667777777777777765 333445666666777777777777777776643
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.2e-05 Score=63.47 Aligned_cols=240 Identities=10% Similarity=0.048 Sum_probs=128.1
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC-C-CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP-Y-PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPD 110 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 110 (490)
|+...++.-=..|. |++..++..-.... . .+...-.-+-++|...|++.....-... .. .|.
T Consensus 8 ~~d~LF~iRn~fY~------------Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~---~~-~~~ 71 (299)
T KOG3081|consen 8 PEDELFNIRNYFYL------------GNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKE---GK-ATP 71 (299)
T ss_pred cchhHHHHHHHHHh------------hHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccc---cc-CCh
Confidence 55566665555555 88887777665433 2 2233333455677777776644332211 11 222
Q ss_pred cccHHHHHHHHhccCCcHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHh
Q 042265 111 FYSFPFLLRACSQLCSHSL-AQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVK 189 (490)
Q Consensus 111 ~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 189 (490)
......+-.....-++.+. ...+.+.+.......+......-...|++.|++++|++..+.. -+......=...+.+
T Consensus 72 lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 72 LQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLK 149 (299)
T ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHH
Confidence 2222222222222333333 2334444444433333333444445677788888888777763 233333333445566
Q ss_pred cCCHHHHHHHHhhCCCC-CeehHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 042265 190 AGDLAHARQLFDRMPFR-DAVSWGTLVAGYAQ----SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKN 264 (490)
Q Consensus 190 ~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 264 (490)
..+++.|.+.+++|..- +..+.+.|..++.+ .+...+|.-+|++|-++ .+|+..+.+....++...+++++|..
T Consensus 150 ~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHH
Confidence 66777777777777655 33445545555543 34566677777776553 45666666666667777777777777
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042265 265 IHRYIELNQIRVDSFLSTGLVDFYAKCG 292 (490)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (490)
+++...... ..++.+...++.+-...|
T Consensus 229 lL~eaL~kd-~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 229 LLEEALDKD-AKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHhcc-CCCHHHHHHHHHHHHHhC
Confidence 777666654 334444444443333333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6e-05 Score=76.29 Aligned_cols=236 Identities=8% Similarity=-0.033 Sum_probs=107.0
Q ss_pred CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCccc-HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 042265 74 PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYS-FPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSL 152 (490)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 152 (490)
.+...|..|+..+...+++++|.++.+...+. .|+... |-.+...+.+.++.+.+..+ .+... .+...-+..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~~v 102 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWAIV 102 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchhHH
Confidence 45566677777777777777777777755553 344332 22222344444554444333 22211 1111111111
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHH
Q 042265 153 MHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQ 229 (490)
Q Consensus 153 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~ 229 (490)
-..|...+++- .+...+-.+..+|-+.|+.++|..+++++.+- |+.+.|.+...|... +.++|.+
T Consensus 103 e~~~~~i~~~~-----------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 103 EHICDKILLYG-----------ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred HHHHHHHHhhh-----------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 11111111110 12223444455555555555555555554322 444555555555555 5555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCe
Q 042265 230 LFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNL 309 (490)
Q Consensus 230 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 309 (490)
++.+.+.. +...+++..+..+|.++.... +.+...+..+.+.....-.. ..-+
T Consensus 171 m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~~-----------~~~~ 223 (906)
T PRK14720 171 YLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHREF-----------TRLV 223 (906)
T ss_pred HHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhcc-----------chhH
Confidence 55444332 333344555555555555443 22222222222211111000 0112
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS 355 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 355 (490)
.++-.+-..|-..++++++..+++...+.... |.....-++.+|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 23344445666777788888888888775433 4455555555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.7e-06 Score=76.91 Aligned_cols=123 Identities=17% Similarity=0.090 Sum_probs=97.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCR 423 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 423 (490)
....++..+...++++.|..+++++.+. . |+ ....+++.+...++-.+|.+++++.. ..| +...+..-...+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~-~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER-D--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc-C--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445566666677888888888888774 1 33 44557777777788888888887754 334 7777777778899
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+.++++.|+.+.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00013 Score=67.07 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=52.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042265 218 YAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTA 297 (490)
Q Consensus 218 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 297 (490)
+...|++++|+..++.++..- +-|..........+...++.++|.+.++.+.... |........+.++|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHH
Confidence 334455555555555544431 2222333333444455555555555555555442 22234444455555555555555
Q ss_pred HHHHhccCC---CCeehHHHHHHHHHHcCChHHHHH
Q 042265 298 IEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 298 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 330 (490)
+..++.... .|+..|..|.++|...|+..++..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 555554432 244455555555555555554443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=8.9e-05 Score=62.06 Aligned_cols=127 Identities=19% Similarity=0.204 Sum_probs=84.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHH
Q 042265 321 MHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEAL 400 (490)
Q Consensus 321 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 400 (490)
..|++++|+++|+.+.+.+ +.|..++..-+...-..|+.-+|++-+....+ .+..|...|..+...|...|++++|.
T Consensus 98 a~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 4566777777777776654 23445555545555556666677777777777 56777788888888888888888888
Q ss_pred HHHhhCC-CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCCchHH
Q 042265 401 EMIKKMP-MGG-DVFVWSGLLGGCRIHG---NVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 401 ~~~~~~~-~~~-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
-.++++. ..| ++..+..+...+.-.| +.+.+.++|.+++++.|.+...+.
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 8887754 445 5555666666543333 667788888888888885544444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.6e-06 Score=63.51 Aligned_cols=94 Identities=14% Similarity=0.036 Sum_probs=82.2
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA 459 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (490)
..-.+...+...|++++|.++|+-+. ..| +..-|..|..++...|++++|+..|.++..++|+++..+..++.++...
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 34456666778999999999998754 333 8888999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcC
Q 042265 460 DRWEDVVKIRRSLDAG 475 (490)
Q Consensus 460 g~~~~A~~~~~~m~~~ 475 (490)
|+.+.|.+.|+.....
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.8e-05 Score=69.24 Aligned_cols=115 Identities=23% Similarity=0.205 Sum_probs=71.9
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 042265 356 HAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEA 433 (490)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~ 433 (490)
..|+++.|+..++.+.. ..+.|+.......+.+.+.++.++|.+.++++. ..| ....+-.+..++.+.|++++|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 45666666666666665 445555555566666666677777766666644 334 35555566666666777777777
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 434 AAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
++++...-+|+++..|..|+.+|...|+..+|.....+.
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 777766666666666666666666666655555544443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-05 Score=62.62 Aligned_cols=98 Identities=21% Similarity=0.202 Sum_probs=83.8
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (490)
+......+...+...|++++|.+.++.+.. .| +...+..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 445566677888899999999999988643 34 7788888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhcCC
Q 042265 457 ANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~~ 476 (490)
...|++++|...+++..+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999998887654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.5e-05 Score=72.17 Aligned_cols=124 Identities=17% Similarity=0.101 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh
Q 042265 180 CNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGEL 259 (490)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 259 (490)
-..++..+...++++.|.++|+++.+.++.....+++.+...++..+|.+++.+.++.. +-+...+..-...+.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34456666777888888888888888888888888888888888899999999888653 34566666677778889999
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC
Q 042265 260 EQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ 305 (490)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 305 (490)
+.|..+.+++.+.. |.+..+|..|..+|.+.|+++.|+..++.++
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999998875 6677789999999999999999998888776
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=7e-05 Score=62.66 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=124.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILG-ALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
|..++-+....|+.+.|..+++++...- |.+.-... -..-+...|++++|.++|+.+.+ ..+.|..++-.-+-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHHH
Confidence 3444555667788899999999988763 44332222 22234567999999999999998 5577777887777777
Q ss_pred hhcCCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC---ChHHH
Q 042265 391 GRAGLIEEALEMIKKMPMG--GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD---RWEDV 465 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 465 (490)
-..|+.-+|++-+.+..+. .|...|..+...|...|++++|.-.+++++-..|.++-.+..++..+.-.| ++.-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7888888888877765432 399999999999999999999999999999999999988889999877655 46778
Q ss_pred HHHHHHHhcCC
Q 042265 466 VKIRRSLDAGK 476 (490)
Q Consensus 466 ~~~~~~m~~~~ 476 (490)
.++|.+..+..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 88888776554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-06 Score=50.10 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF 111 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 111 (490)
.+||.+|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0069 Score=60.14 Aligned_cols=406 Identities=15% Similarity=0.116 Sum_probs=213.2
Q ss_pred CCChhHHHHhhccCC--CCCcccHHHHHHH--HHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHH
Q 042265 58 TDPLSYALSIFNNIP--YPSTFSYNTIIRA--HTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTI 133 (490)
Q Consensus 58 ~g~~~~A~~~~~~~~--~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 133 (490)
.+++..|++..+.+. .||. .|..++.+ +.|.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 456677777666653 3443 34445554 45778888888888877665433 667788888888888888888888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChHH----HHHHHHhcccCCchhHHHHHHHHHhc-CC---------HHHHHHH
Q 042265 134 HSQVLKLGFICDVFVLNSLMHVYCVFHRLRD----AQELFDEILYRDVVSCNTLIDGYVKA-GD---------LAHARQL 199 (490)
Q Consensus 134 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~l~~~~~~~-~~---------~~~a~~~ 199 (490)
|++..+. .|+......+..+|.+.+++.+ |++++....+.--..|+ +++..... .. ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHHHH
Confidence 8888775 4667777777788888777654 55555544444333443 33333221 11 2334555
Q ss_pred HhhCCCCC--ee---hHHHHHHHHHhcCChhHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 042265 200 FDRMPFRD--AV---SWGTLVAGYAQSDQCEEAIQLFC-NMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQ 273 (490)
Q Consensus 200 ~~~~~~~~--~~---~~~~l~~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 273 (490)
++.+.+.+ .. -...-...+-..|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++..++...+
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 55554433 11 11122233456778888888883 33333333344444566677778888888888888888776
Q ss_pred CCCChhhHHHHHHHHHh----------------cCCHHHHHHHHhccCCC-CeehHHHHHHHHH---HcCChHHHHHHHH
Q 042265 274 IRVDSFLSTGLVDFYAK----------------CGYINTAIEIFESSQEK-NLFTWNAMLVGLA---MHGLGRLSLVYFS 333 (490)
Q Consensus 274 ~~~~~~~~~~l~~~~~~----------------~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~A~~~~~ 333 (490)
+.| |...++.+.+ .+..+...+...+.... .-..|-+-+.+.. .-|+.+++...|-
T Consensus 257 -~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~ 332 (932)
T KOG2053|consen 257 -NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYF 332 (932)
T ss_pred -Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHH
Confidence 333 3333332211 12222333332222221 1223333333333 3466666554432
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCch-------HHHHHHhhhhhcCCH-----HHHHH
Q 042265 334 RMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELK-------HYGCMADLLGRAGLI-----EEALE 401 (490)
Q Consensus 334 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~-----~~A~~ 401 (490)
+- -|-.| .+..=+..|...=..++-..++...... .++.. .+.+.+..-.-.|.+ +.-..
T Consensus 333 ~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 333 KK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 21 12111 1111111111111122222222222210 01100 011111111111211 11111
Q ss_pred HH-------hhCCCC-----C------C---HHHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 402 MI-------KKMPMG-----G------D---VFVWSGLLGGCRIHGNV---EIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 402 ~~-------~~~~~~-----~------~---~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
++ +.-... | + ..+.+.++..+.+.++. -+|+-+++..+...|.|...-..++++|+
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~ 484 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYS 484 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 11 111000 1 1 12455666777777654 56788888888889988877788899999
Q ss_pred hcCChHHHHHHHHHHhcCCCCCC
Q 042265 458 NADRWEDVVKIRRSLDAGKIKKN 480 (490)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~~~~~~ 480 (490)
-.|-...|.++++.+.-+.|..+
T Consensus 485 ~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 485 YLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HhcCChhHHHHHHhcchHHhhhc
Confidence 99999999999988866665544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.8e-05 Score=61.37 Aligned_cols=121 Identities=15% Similarity=0.068 Sum_probs=68.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC---chHHHHHHhhhhhcCCHHHHHHHHhhCCCC-CCH----HHHHHH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKE---LKHYGCMADLLGRAGLIEEALEMIKKMPMG-GDV----FVWSGL 418 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l 418 (490)
|..++..+ ..++...+...++.+.+. .+.+ ....-.+...+...|++++|...|+.+... ++. .....+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 33333433 356666666666666663 2222 222333455666667777777777665432 222 233445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 419 LGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 419 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
...+...|++++|+..++... ..+..+..+...+.+|.+.|++++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 566667777777777775532 2222334566677777777777777777765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.008 Score=59.73 Aligned_cols=387 Identities=11% Similarity=0.056 Sum_probs=220.8
Q ss_pred HHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCccc
Q 042265 37 LTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYS 113 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 113 (490)
.+...+..+... |.|..++|..+++... ..|..+...+-..|...++.++|..+|++..+. -|+..-
T Consensus 43 ~~a~vLkaLsl~--------r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eel 112 (932)
T KOG2053|consen 43 LYAKVLKALSLF--------RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEEL 112 (932)
T ss_pred HHHHHHHHHHHH--------HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHH
Confidence 344555555533 8899999999998764 347778889999999999999999999999876 477777
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC----------hHHHHHHHHhcccCC-c-h---
Q 042265 114 FPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHR----------LRDAQELFDEILYRD-V-V--- 178 (490)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~-~-~--- 178 (490)
...+..+|.+.+++.+-.++--++-+ .++.++..+-.+++...+.-. ..-|.+.++.+.+.+ . .
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~a 191 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEA 191 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHH
Confidence 88888899999888776666555554 356677777777777665321 234555666665443 1 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhh-----CCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH----H
Q 042265 179 SCNTLIDGYVKAGDLAHARQLFDR-----MPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVS----A 249 (490)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~----l 249 (490)
-.......+...|++++|.+++.. ....+...-+--+..+...++|.+..++-.++...|.. |-.+|.- +
T Consensus 192 E~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-dy~~~~~sv~kl 270 (932)
T KOG2053|consen 192 EIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-DYKIYTDSVFKL 270 (932)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-chHHHHHHHHHH
Confidence 112223445678899999999832 22224445556677788889999999998888887622 2112111 1
Q ss_pred HHH---------HHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---hcCCHHHHHHHH-hccCC----------
Q 042265 250 LSA---------CARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYA---KCGYINTAIEIF-ESSQE---------- 306 (490)
Q Consensus 250 ~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~-~~~~~---------- 306 (490)
+.. ....+..+...+...+..... ....|-+-+.++. .-|+.+++.-.| ++.-.
T Consensus 271 Le~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~ 347 (932)
T KOG2053|consen 271 LELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNH 347 (932)
T ss_pred HHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHH
Confidence 111 111122233333222222221 1112222222222 335555544322 22211
Q ss_pred --------------------CCeeh--------HHHHHHHHHHcC-----ChHHHHHHHHHHH---HCC------CCCCH
Q 042265 307 --------------------KNLFT--------WNAMLVGLAMHG-----LGRLSLVYFSRMI---EAR------IKPDG 344 (490)
Q Consensus 307 --------------------~~~~~--------~~~l~~~~~~~~-----~~~~A~~~~~~m~---~~~------~~p~~ 344 (490)
.+..+ +...+..-...| ..+....++++.. ++| +-|+.
T Consensus 348 yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE 427 (932)
T KOG2053|consen 348 YLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTE 427 (932)
T ss_pred hhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccc
Confidence 01111 111111111122 1222333333322 222 33443
Q ss_pred H---------HHHHHHHHhhccCcHH---HHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-C
Q 042265 345 V---------TILGALVGCSHAGLVD---EARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-D 411 (490)
Q Consensus 345 ~---------~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 411 (490)
. +.+.++..+.+.++.. +|+-+++.... ..+.|..+--.+++.|+-.|-+..|.++++.+..+. .
T Consensus 428 ~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 428 YSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQ 505 (932)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhh
Confidence 3 3356677788877765 45555555544 334455555678999999999999999999876543 1
Q ss_pred HHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q 042265 412 VFVWSG-LLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 412 ~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
..|... +...+...|++..+...+....+
T Consensus 506 ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 506 TDTLGHLIFRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred hccchHHHHHHHHhcccchhHHHHHHHHHH
Confidence 112222 23335566777777777777666
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00013 Score=58.35 Aligned_cols=125 Identities=17% Similarity=0.125 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC--chHHHHHH
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD--GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE--LKHYGCMA 387 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~ 387 (490)
|..++..+ ..++...+...++.+......-. ......+...+...|++++|...|+.+... ...+. ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33444444 47788888888888877532211 123333456677889999999999988875 32222 12344567
Q ss_pred hhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042265 388 DLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHV 438 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 438 (490)
..+...|++++|+..++.....+ .+..+...+..+...|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77888899999999998765544 5566777778889999999999988875
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.6e-06 Score=48.67 Aligned_cols=33 Identities=30% Similarity=0.578 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCC
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPP 109 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 109 (490)
.+||.++.++++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777666
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.9e-06 Score=56.08 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC-ChHHHHHHHHHHhc
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD-RWEDVVKIRRSLDA 474 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 474 (490)
++.+|..++..+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999 79999999998765
|
... |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.5e-06 Score=47.35 Aligned_cols=33 Identities=36% Similarity=0.758 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD 242 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 242 (490)
+||.++.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.4e-06 Score=47.02 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=26.2
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKP 241 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 241 (490)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577888888888888888888888888877776
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.7e-05 Score=56.18 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=75.3
Q ss_pred HHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 042265 383 YGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD 460 (490)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (490)
+..+...+...|++++|...+++.. ..| +...+..+...+...+++++|.+.++++.+..|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4456667777888888888887754 233 45677778888888899999999999999988888888889999999999
Q ss_pred ChHHHHHHHHHHhcC
Q 042265 461 RWEDVVKIRRSLDAG 475 (490)
Q Consensus 461 ~~~~A~~~~~~m~~~ 475 (490)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999998887654
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.012 Score=56.77 Aligned_cols=40 Identities=23% Similarity=0.164 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh---hCCCCCchHHHHHHHHH
Q 042265 417 GLLGGCRIHGNVEIAEAAAEHVMK---LKPEDGGVYKVLADVYA 457 (490)
Q Consensus 417 ~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~ 457 (490)
.|..--...|..+.|.+..-.+.. .-|+ ..+|..++-+-+
T Consensus 1026 ilAQrql~eg~v~~Al~Tal~L~DYEd~lpP-~eiySllALaac 1068 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTALILSDYEDFLPP-AEIYSLLALAAC 1068 (1189)
T ss_pred HHHHHHHHhchHHHHHHHHhhhccHhhcCCH-HHHHHHHHHHHh
Confidence 333334556777777665444433 3332 235555544433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.5e-05 Score=58.20 Aligned_cols=100 Identities=17% Similarity=0.055 Sum_probs=46.8
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC----CHHHHHHHHH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSK-ELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG----DVFVWSGLLG 420 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~ 420 (490)
+..+...+.+.|++++|.+.+..+.+.+...+ ....+..+..++.+.|++++|...++.+.. .| ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444445555566666666555554211101 122333445555555555555555554321 11 1334444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
++...|+.++|...++++++..|+++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 55555555555555555555555444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0095 Score=54.65 Aligned_cols=441 Identities=11% Similarity=0.068 Sum_probs=222.7
Q ss_pred HHHHhhchhHHHHHHHHHHHhCCCCCCC----chhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC--CCcccH
Q 042265 6 FIKRCKTIKQIHQIHAHFLTKGLLFLSP----CHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY--PSTFSY 79 (490)
Q Consensus 6 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 79 (490)
.|...+.++.++.|+..+.... ..+| -....+.++++|- .++++.....+....+ | ...|
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~--~~~~f~lkeEvl~grilnAff-----------l~nld~Me~~l~~l~~~~~-~s~~ 80 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK--ESSPFLLKEEVLGGRILNAFF-----------LNNLDLMEKQLMELRQQFG-KSAY 80 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh--hcchHHHHHHHHhhHHHHHHH-----------HhhHHHHHHHHHHHHHhcC-CchH
Confidence 3445566777777777775442 2001 1445677888888 6667766666655442 3 3455
Q ss_pred HHHHHHH--HcCCCchhHHHHHHHhhhC--CCCC------------CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCC
Q 042265 80 NTIIRAH--TLFSSPLNAVVLFSQMRTV--SIPP------------DFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFI 143 (490)
Q Consensus 80 ~~li~~~--~~~g~~~~A~~~~~~m~~~--~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 143 (490)
-.+..++ -+.+++.+|++.+...... +-.| |-..=+..+.++...|++.+++.+++++...=++
T Consensus 81 l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk 160 (549)
T PF07079_consen 81 LPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK 160 (549)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence 5555543 4678888888888776654 2222 1111234556667778888888888877664433
Q ss_pred ----CchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHH
Q 042265 144 ----CDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYA 219 (490)
Q Consensus 144 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 219 (490)
.+..+|+.++-.+.+.=-.+ +-+.+...=...|-.++..|.+.=..-++. -+++. .|.......++....
T Consensus 161 rE~~w~~d~yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~~d~~-~Y~k~-~peeeL~s~imqhlf 234 (549)
T PF07079_consen 161 RECEWNSDMYDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQR-PYEKF-IPEEELFSTIMQHLF 234 (549)
T ss_pred hhhcccHHHHHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHHHhhc-hHHhh-CcHHHHHHHHHHHHH
Confidence 67778877666555421111 111111111122333444443221111100 00000 011111222222221
Q ss_pred hc--CChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcC
Q 042265 220 QS--DQCEEAIQLFCNMMDLDIKPDNIA-LVSALSACARLGELEQGKNIHRYIELNQIRV----DSFLSTGLVDFYAKCG 292 (490)
Q Consensus 220 ~~--g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~ 292 (490)
-. .+..--++++....+.-+.|+... ...+...+.+ +.+++..+.+.+....+.+ -..++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 112222333333344444555332 2233333333 4455555544444332111 1345666666677777
Q ss_pred CHHHHHHHHhccC--CCCeehH-------HHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHH---HHhhc
Q 042265 293 YINTAIEIFESSQ--EKNLFTW-------NAMLVGLAM----HGLGRLSLVYFSRMIEARIKPDGVTILGAL---VGCSH 356 (490)
Q Consensus 293 ~~~~A~~~~~~~~--~~~~~~~-------~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~---~~~~~ 356 (490)
+...|...+.-+. +|+...- ..+-+..+. .-+...=+.+|+.....++.- ......++ .-+.+
T Consensus 313 ~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~ 391 (549)
T PF07079_consen 313 QTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWE 391 (549)
T ss_pred hHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHh
Confidence 7777776665433 2322111 111111111 111222334455554443221 11122222 22455
Q ss_pred cCc-HHHHHHHHHHhHHhhCCCCCchHHHHHH----hhhhhc---CCHHHHHH---HHhhCCCCC----CHHHHHHHHHH
Q 042265 357 AGL-VDEARKLFDEMESVYGVSKELKHYGCMA----DLLGRA---GLIEEALE---MIKKMPMGG----DVFVWSGLLGG 421 (490)
Q Consensus 357 ~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~~A~~---~~~~~~~~~----~~~~~~~l~~~ 421 (490)
.|. -++|.++++.+.+- -+-|...-|.+. ..|..+ ..+..-.. ..++....| +...-|.+..+
T Consensus 392 ~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 392 IGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred cCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 555 77888888888762 233433333222 222221 11222222 222222222 66677777777
Q ss_pred --HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 422 --CRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 422 --~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
+..+|++.++.-.-..+.++.| ++.+|..+|-++....+|++|+.++..+
T Consensus 470 EyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 6689999999999999999999 7789999999999999999999999865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=53.83 Aligned_cols=58 Identities=17% Similarity=0.240 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+...+...|++++|+..|+++++..|.++.++..++.++.+.|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566788899999999999999988998889999999999999999999999888654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.9e-05 Score=65.38 Aligned_cols=106 Identities=15% Similarity=0.048 Sum_probs=79.6
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIA 431 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 431 (490)
..+.+++++|...|.++.+ -.+.|+..|..-..+|.+.|.++.|++-.+... ..| ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4567888888888888887 556677777777888888888888888777654 333 567888888888888888888
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 432 EAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
++.|+++++++|++......|-.+-.+.+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 888888888888888555555555444443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00012 Score=63.46 Aligned_cols=110 Identities=13% Similarity=0.080 Sum_probs=89.4
Q ss_pred CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhCCCCCchH
Q 042265 375 GVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH---GNVEIAEAAAEHVMKLKPEDGGVY 449 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~ 449 (490)
..+-|...|..|...|...|+++.|..-|.+.. ..| ++..+..+..++..+ ....++..+++++++.+|.++.+.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 456688889999999999999999999887743 333 777777777774432 355788999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCcee
Q 042265 450 KVLADVYANADRWEDVVKIRRSLDAGKIKKNAGCS 484 (490)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 484 (490)
..|+..+...|++.+|...|+.|.+..-..+|..+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 99999999999999999999999988766666544
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.5e-06 Score=58.75 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=42.0
Q ss_pred CCHHHHHHHHhhCCC-CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 394 GLIEEALEMIKKMPM-GG---DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 394 g~~~~A~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
|+++.|+.+++++.. .| +...+..+..++.+.|++++|+.++++ .+.+|.+......++.++.+.|++++|++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445555555554331 11 233344456666666666666666666 5555555455555566666666666666666
Q ss_pred HH
Q 042265 470 RS 471 (490)
Q Consensus 470 ~~ 471 (490)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=56.18 Aligned_cols=96 Identities=16% Similarity=-0.008 Sum_probs=73.6
Q ss_pred hHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHH
Q 042265 381 KHYGCMADLLGRAGLIEEALEMIKKMPM-GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED---GGVYKVL 452 (490)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 452 (490)
.++..++..+.+.|++++|.+.|+++.. .| ....+..+...+.+.|+++.|...++.+....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3455677778888888888888887652 22 24566667888888888888888888888877765 4467788
Q ss_pred HHHHHhcCChHHHHHHHHHHhcCC
Q 042265 453 ADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+.++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 888888888888888888887764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.1e-05 Score=69.96 Aligned_cols=106 Identities=16% Similarity=0.057 Sum_probs=89.1
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 042265 351 LVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNV 428 (490)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~ 428 (490)
...+...|++++|...|+++.+ ..+.+...|..+..+|...|++++|+..++++. ..| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 4456678999999999999998 456677888889999999999999999998865 334 788899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 429 EIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 429 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
++|+..|+++++++|+++.....+..+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999998776666555433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0003 Score=63.18 Aligned_cols=154 Identities=11% Similarity=0.001 Sum_probs=107.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hhccCcHHHHHHHHHHhHHhhCCCCCchHHHH---------
Q 042265 317 VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVG--CSHAGLVDEARKLFDEMESVYGVSKELKHYGC--------- 385 (490)
Q Consensus 317 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--------- 385 (490)
.++...|++++|.+.--...+... ...+...+++ +...++.+.+...|++... ..|+...-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 345667888888877666655421 1223333333 3346778888888887764 2343322111
Q ss_pred ----HHhhhhhcCCHHHHHHHHhhCC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 386 ----MADLLGRAGLIEEALEMIKKMP-MGG-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 386 ----l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
=..-..+.|++.+|.+.+.+.. ..| ++..|.....+..+.|+..+|+.-.+++++++|.-...|..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 1223457789999999987754 333 666777777778889999999999999999999888888888888
Q ss_pred HHhcCChHHHHHHHHHHhcCC
Q 042265 456 YANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+...++|++|.+-+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999988876553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.7e-05 Score=66.15 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=78.7
Q ss_pred hhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHH
Q 042265 388 DLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDV 465 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (490)
.-+.+.+++++|+..|.+.. ..| |++-|..-..+|.+.|.++.|++-++.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34567899999999998754 455 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 042265 466 VKIRRSLDAG 475 (490)
Q Consensus 466 ~~~~~~m~~~ 475 (490)
++.|++..+.
T Consensus 169 ~~aykKaLel 178 (304)
T KOG0553|consen 169 IEAYKKALEL 178 (304)
T ss_pred HHHHHhhhcc
Confidence 9999876543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00015 Score=67.36 Aligned_cols=90 Identities=10% Similarity=-0.083 Sum_probs=72.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcC
Q 042265 315 MLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAG 394 (490)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 394 (490)
....+...|++++|++.|+++++... -+...|..+..++...|++++|...++++.. -.+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 34556778999999999999888643 2566777788888899999999999999887 44556777888888899999
Q ss_pred CHHHHHHHHhhCC
Q 042265 395 LIEEALEMIKKMP 407 (490)
Q Consensus 395 ~~~~A~~~~~~~~ 407 (490)
++++|...|++..
T Consensus 85 ~~~eA~~~~~~al 97 (356)
T PLN03088 85 EYQTAKAALEKGA 97 (356)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0024 Score=51.11 Aligned_cols=132 Identities=13% Similarity=-0.018 Sum_probs=98.8
Q ss_pred CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C---CHHHH
Q 042265 340 IKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G---DVFVW 415 (490)
Q Consensus 340 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~~~~~ 415 (490)
..|+...-..|..+..+.|+..+|...|++...- -+..|......+.++....+++..|...++++.+. | ++.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4566666667778888889999999888888873 44567777777888888888888888888875432 2 44555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 416 SGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 416 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
..+...+...|.+.+|+..|+.++...|.. ......+..+.+.|+.++|..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 567788888899999999999998887754 366667777888888777766555444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=2.9e-05 Score=52.77 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=43.8
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.+.|++++|++.++++.+..|++..+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788888888888888888888888888888888888888888888877654
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.3e-05 Score=43.56 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhCC
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTVS 106 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 106 (490)
++||.++++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 367777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0031 Score=56.97 Aligned_cols=266 Identities=11% Similarity=-0.044 Sum_probs=129.6
Q ss_pred HhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHH
Q 042265 121 CSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHAR 197 (490)
Q Consensus 121 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~ 197 (490)
+.+..++..|+..+...++.+ +.+..-|..-...+...|++++|.--.+.-+.. ........-+++...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 344456666666666666654 444555555555566666666665544433221 1122333334444444445555
Q ss_pred HHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHccCChHHHHHHHHHHHHcCCC
Q 042265 198 QLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI-KPDNIALVSA-LSACARLGELEQGKNIHRYIELNQIR 275 (490)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~ 275 (490)
+.++. ...| ....++..++....... +|.-.++-.+ ..++...|+.++|.++--.+.+.. .
T Consensus 138 ~~~~~-----~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~ 200 (486)
T KOG0550|consen 138 EKLKS-----KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-A 200 (486)
T ss_pred HHhhh-----hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-c
Confidence 44441 1111 11122222222222211 1323333322 234455667777666655555443 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeeh---------------HHHHHHHHHHcCChHHHHHHHHHHHHC--
Q 042265 276 VDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFT---------------WNAMLVGLAMHGLGRLSLVYFSRMIEA-- 338 (490)
Q Consensus 276 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~A~~~~~~m~~~-- 338 (490)
.+....-.-..++.-.++.+.+...|++...-++.. +..-..-..+.|.+..|.+.|.+.+..
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP 280 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDP 280 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCc
Confidence 222222222223344566677777777666533321 111223345667777777777777653
Q ss_pred -CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC
Q 042265 339 -RIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM 406 (490)
Q Consensus 339 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (490)
...|+...|........+.|+..+|+.--+...+. .+.-...|..-..++...++|++|.+-+++.
T Consensus 281 ~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 281 SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555666666666777777777766666541 1111222223333444556677777776653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=52.04 Aligned_cols=88 Identities=24% Similarity=0.186 Sum_probs=40.6
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIA 431 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 431 (490)
+...|++++|...++.+.+ ..+.+...+..+...+...|++++|.+.+++.. ..| +...+..+...+...|+++.|
T Consensus 10 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 87 (100)
T cd00189 10 YYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEA 87 (100)
T ss_pred HHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHH
Confidence 3334444444444444443 122222333444444444455555555444422 111 334455555555555666666
Q ss_pred HHHHHHHHhhCC
Q 042265 432 EAAAEHVMKLKP 443 (490)
Q Consensus 432 ~~~~~~~~~~~p 443 (490)
...++++.+..|
T Consensus 88 ~~~~~~~~~~~~ 99 (100)
T cd00189 88 LEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHccCC
Confidence 666665555444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00021 Score=59.01 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=57.2
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMPM-GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (490)
.+..+...+...|++++|...|++... .+ ....+..++..+.+.|++++|+..++++++..|.+...+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344455555555666666655554331 11 1345666667777777777777777777777777777777777777
Q ss_pred HhcCC--------------hHHHHHHHHHHhc
Q 042265 457 ANADR--------------WEDVVKIRRSLDA 474 (490)
Q Consensus 457 ~~~g~--------------~~~A~~~~~~m~~ 474 (490)
...|+ +++|.+++++...
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 66665 4556666655544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0043 Score=54.14 Aligned_cols=173 Identities=9% Similarity=0.036 Sum_probs=100.4
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCe---eh---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-
Q 042265 284 LVDFYAKCGYINTAIEIFESSQEKNL---FT---WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH- 356 (490)
Q Consensus 284 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~- 356 (490)
....+.+.|++++|.+.|+++....+ .. .-.++.++.+.+++++|...+++..+....-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 33444556666666666666654211 11 123455667777777777777777765332222333333333221
Q ss_pred -c---------------Cc---HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHH
Q 042265 357 -A---------------GL---VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSG 417 (490)
Q Consensus 357 -~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 417 (490)
. .| ..+|...|+.+.+. . |+. .-..+|...+..+..+ -...-..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--y-P~S-------------~ya~~A~~rl~~l~~~-la~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--Y-PNS-------------QYTTDATKRLVFLKDR-LAKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--C-cCC-------------hhHHHHHHHHHHHHHH-HHHHHHH
Confidence 0 11 23455555565553 2 222 2233444333333211 1111224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDG---GVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+...|.+.|.+.-|+.-++.+++..|+.+ .+...+..+|.+.|..++|..+.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 55668899999999999999999777655 466688899999999999998877654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.6e-05 Score=50.78 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=49.5
Q ss_pred HHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 386 MADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+...+...|++++|.+.|+++.. .| +...+..+..++...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45667788999999999988653 34 778888899999999999999999999999999864
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.021 Score=51.47 Aligned_cols=98 Identities=12% Similarity=0.027 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhh-CCCCC--chH
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKP-----DGV-TILGALVGCSHAGLVDEARKLFDEMESVY-GVSKE--LKH 382 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-----~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~--~~~ 382 (490)
+..+...+.+.|++++|.++|++........ +.. .+...+-++...||+..|.+.+++..... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 3445666777788888888887776543221 111 22223334555788888888888876531 22222 234
Q ss_pred HHHHHhhhhh--cCCHHHHHHHHhhCCCC
Q 042265 383 YGCMADLLGR--AGLIEEALEMIKKMPMG 409 (490)
Q Consensus 383 ~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 409 (490)
...|+.++-. ...+++|..-|+.+..-
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 4556666643 34566777777776643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.5e-05 Score=53.92 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=38.8
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 042265 357 AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAA 435 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 435 (490)
.|+++.|+.+++++.+.....++...+..+..+|.+.|++++|..++++....+ +......++.++.+.|++++|++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 355555666665555531111123333335555666666666666665522111 2233334455566666666666665
Q ss_pred HH
Q 042265 436 EH 437 (490)
Q Consensus 436 ~~ 437 (490)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0089 Score=57.17 Aligned_cols=86 Identities=14% Similarity=0.067 Sum_probs=48.0
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C-----------CH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G-----------DV 412 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----------~~ 412 (490)
.+...+...+.+...+..|-++|.+|-.. ..+++.....+++++|.++-++.++- + ..
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 34444444445555566666666665432 34566666667777776666655422 1 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.-+...-.+|.+.|+-.+|.++++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 1222333456667777777777777654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0014 Score=58.69 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVG-CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+ .++.+...+...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Confidence 57777888888888999999999998543 2233444443333 3336778889999999998 456677888889999
Q ss_pred hhhcCCHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 390 LGRAGLIEEALEMIKKMPM-GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+...|+.+.|..+|++... .+ ....|...+..-.+.|+.+.+..+.+++.+..|.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998653 33 345899999999999999999999999999888755
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00022 Score=58.66 Aligned_cols=94 Identities=12% Similarity=-0.087 Sum_probs=72.7
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
....+..++..+...|++++|...|++.. ..+ ...++..+...+...|++++|+..++++++..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 34456667777778888888888887753 111 2457888889999999999999999999999999888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHH
Q 042265 454 DVYA-------NADRWEDVVKIRRSL 472 (490)
Q Consensus 454 ~~~~-------~~g~~~~A~~~~~~m 472 (490)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 778887666555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=50.32 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=49.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 420 GGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 420 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
..|.+.+++++|.+.++++++.+|+++..+...+.++.+.|++++|.+.+++..+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788899999999999999999988888889999999999999999998887654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00034 Score=50.89 Aligned_cols=79 Identities=10% Similarity=-0.010 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhCCC-CCCcccHHHHHHHHhccC--------CcHHHHHHHHHHHHhCCCCchhHHH
Q 042265 80 NTIIRAHTLFSSPLNAVVLFSQMRTVSI-PPDFYSFPFLLRACSQLC--------SHSLAQTIHSQVLKLGFICDVFVLN 150 (490)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 150 (490)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. ..-..+.+|+.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999999 899999999999887653 2345788899999999999999999
Q ss_pred HHHHHHHh
Q 042265 151 SLMHVYCV 158 (490)
Q Consensus 151 ~li~~~~~ 158 (490)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.9e-05 Score=42.14 Aligned_cols=29 Identities=31% Similarity=0.650 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLD 238 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 238 (490)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.037 Score=50.33 Aligned_cols=107 Identities=13% Similarity=0.151 Sum_probs=83.0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIH 425 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (490)
+.+..+.-|...|+...|.++-.+. .+ |+...|...+.+|+..++|++-.++-.. +.++..|..++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4455566677788887777665554 33 7888899999999999999988887654 33678899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 426 GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
|+..+|..+..++ .+..-+..|.++|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHH
Confidence 9999999888872 2366777888999999987663
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.042 Score=50.51 Aligned_cols=393 Identities=9% Similarity=0.015 Sum_probs=210.7
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCc---ccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPST---FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPP 109 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 109 (490)
.+...|-.|+..|. ..|..++.+++++++..|-+ .+|..-+++-...+++.....+|.+..... .
T Consensus 40 tnI~S~fqLiq~~~----------tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l 107 (660)
T COG5107 40 TNILSYFQLIQYLE----------TQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--L 107 (660)
T ss_pred hhHHHHHHHHHHHh----------hhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--c
Confidence 67788999999999 89999999999999886643 478888888888889999999998887754 3
Q ss_pred CcccHHHHHHHHhccCCc------HHHHHHHHHHHH-hCCCCch-hHHHHHHHHH---HhcC------ChHHHHHHHHhc
Q 042265 110 DFYSFPFLLRACSQLCSH------SLAQTIHSQVLK-LGFICDV-FVLNSLMHVY---CVFH------RLRDAQELFDEI 172 (490)
Q Consensus 110 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~-~g~~~~~-~~~~~li~~~---~~~g------~~~~A~~~~~~~ 172 (490)
+...|...+....+.+.. ....+.|+-... .++.|-. ..|+..+..+ -..| ++|.....+.++
T Consensus 108 ~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ra 187 (660)
T COG5107 108 NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRA 187 (660)
T ss_pred cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 455555555543332211 122334444333 3444432 3344433322 1223 345556666666
Q ss_pred ccCC----------chhHHHHHHHHH-------hcCCHHHHHHHHhhCCC---------C-CeehHH-----------HH
Q 042265 173 LYRD----------VVSCNTLIDGYV-------KAGDLAHARQLFDRMPF---------R-DAVSWG-----------TL 214 (490)
Q Consensus 173 ~~~~----------~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~---------~-~~~~~~-----------~l 214 (490)
+... -..|..=++-.. ..--+-.|...+++... | +..+++ ..
T Consensus 188 l~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNw 267 (660)
T COG5107 188 LQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNW 267 (660)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhH
Confidence 4321 111111111100 00112223333333220 0 111111 11
Q ss_pred HHHHHhc-----CCh--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 215 VAGYAQS-----DQC--EEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 215 ~~~~~~~-----g~~--~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
|.--... |+. ....-++++.... +......|.---.-+...++-+.|.+.... |.+..+.....+...
T Consensus 268 IkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~spsL~~~lse~ 342 (660)
T COG5107 268 IKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPSLTMFLSEY 342 (660)
T ss_pred hhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCchheeHHHH
Confidence 1111100 000 0000111111110 001111111111122233444555444332 323222222223333
Q ss_pred HHhcCCHHHHHHHHhccC---------------------------------CCCeehHHHHHHHHHHcCChHHHHHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQ---------------------------------EKNLFTWNAMLVGLAMHGLGRLSLVYFSR 334 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 334 (490)
|.-..+-+.....|++.. ..-..+|...+..-.+....+.|..+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333332211 11234567777777777888888889988
Q ss_pred HHHCC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC----
Q 042265 335 MIEAR-IKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG---- 409 (490)
Q Consensus 335 m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 409 (490)
..+.| +.++...+++++..++ .|+...|.++|+.-.. .++.++.--+..+..+.+.++-+.|..+|+....+
T Consensus 423 ~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~ 499 (660)
T COG5107 423 LRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT 499 (660)
T ss_pred HhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh
Confidence 88887 5677778888888664 6888888888887766 33334433455666777888888888888854322
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042265 410 GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 410 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 445 (490)
.-..+|..++..-..-|+...+..+-+++.+..|..
T Consensus 500 q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 500 QLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 235678888888888888888888888888877764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.068 Score=52.41 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCR 423 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 423 (490)
..+.+--+.-+...|+-.+|.++-.+.+- ||...|..-+.+++..+++++-+++-+..+ .+.-|..+..+|.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACL 755 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHH
Confidence 34455555666778888888877766543 777888888888999999988887777655 3566778888999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
+.|+.++|..++-+... +.-...+|.+.|++.+|.++-
T Consensus 756 ~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHH
Confidence 99999999888876522 225777888888888887653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0011 Score=54.86 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=58.5
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD--NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLV 285 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 285 (490)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566677777777788888877777765432222 3466677777777788888888777777654 33455566666
Q ss_pred HHHHhcCCHHHHH
Q 042265 286 DFYAKCGYINTAI 298 (490)
Q Consensus 286 ~~~~~~~~~~~A~ 298 (490)
.++...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6666666544433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0034 Score=56.50 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc-----ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 042265 79 YNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF-----YSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLM 153 (490)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 153 (490)
|......|...|++++|.+.|.+..+.....+. ..|......+ +..+++.|...+ ...+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~---------------~~A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECY---------------EKAI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHH---------------HHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHH---------------HHHH
Confidence 444556666677777777777665432100000 0111111211 112333333333 3334
Q ss_pred HHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC-------C--CeehHHHHHHHHHhcCC
Q 042265 154 HVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKA-GDLAHARQLFDRMPF-------R--DAVSWGTLVAGYAQSDQ 223 (490)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~g~ 223 (490)
..|...|++..|-+++.+ +...|... |++++|.+.|++... + -..++..+...+.+.|+
T Consensus 102 ~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 445555555555444433 23334444 555555555544321 1 12345566677777788
Q ss_pred hhHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcC--CCCC--hhhHHHHHHHHHhc--
Q 042265 224 CEEAIQLFCNMMDLDIK-----PDNI-ALVSALSACARLGELEQGKNIHRYIELNQ--IRVD--SFLSTGLVDFYAKC-- 291 (490)
Q Consensus 224 ~~~A~~~~~~m~~~~~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~l~~~~~~~-- 291 (490)
+++|.++|++....... .+.. .|...+-++...||...|...++...... +..+ ..+...|+.++-..
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence 88888888776654221 1221 22333445556677777777777766442 1111 23444555555432
Q ss_pred CCHHHHHHHHhccCCCCe
Q 042265 292 GYINTAIEIFESSQEKNL 309 (490)
Q Consensus 292 ~~~~~A~~~~~~~~~~~~ 309 (490)
..++.+..-|+.+.+-|.
T Consensus 251 e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 251 EAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp CCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHcccCccHH
Confidence 345556666666555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0022 Score=62.40 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
++..+..+.......|++++|...++++++++|. ...|..++.++...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444444455555555555555555552 34555555555555555555555555443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.014 Score=46.91 Aligned_cols=132 Identities=16% Similarity=0.019 Sum_probs=87.0
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC-----CeehHH
Q 042265 239 IKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK-----NLFTWN 313 (490)
Q Consensus 239 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~ 313 (490)
+.|+...-..|..+....|+..+|...|.+....-+..|..+...+.++....++...|...++++-+. ++.+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 356666666777777788888888888877776666667777777777777777777777777766542 344555
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 314 AMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
.+...+...|.+.+|+..|+..... .|+...-......+.++|+.+++..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6667777777777777777777764 34443333333445566666665555444444
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.052 Score=49.35 Aligned_cols=102 Identities=13% Similarity=0.043 Sum_probs=50.4
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 285 VDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
+.-+...|+...|.++-.+..-|+-.-|-..+.+++..++|++-.++... . -++.-|..++.+|.+.|+..+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCCHHHHH
Confidence 34444455555555555555555555555555555555555554443221 1 12244555555555555555555
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHH
Q 042265 365 KLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMI 403 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (490)
.+..++. +..-+..|.++|++.+|.+.-
T Consensus 258 ~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 258 KYIPKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 5544421 123344555555555554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0013 Score=48.03 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=67.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCChhh
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDI-KPDNIALVSALSACARLG--------ELEQGKNIHRYIELNQIRVDSFL 280 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 280 (490)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+...+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 899999999999887653 23456778999999999999999
Q ss_pred HHHHHHHHHh
Q 042265 281 STGLVDFYAK 290 (490)
Q Consensus 281 ~~~l~~~~~~ 290 (490)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0037 Score=60.88 Aligned_cols=141 Identities=11% Similarity=0.052 Sum_probs=97.5
Q ss_pred CCeehHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcc--------CcHHHHHHHHHHhHH
Q 042265 307 KNLFTWNAMLVGLAMH-----GLGRLSLVYFSRMIEARIKPDG-VTILGALVGCSHA--------GLVDEARKLFDEMES 372 (490)
Q Consensus 307 ~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~ 372 (490)
.+...|...+.+.... ++...|..+|++.++. .|+- ..+..+..++... +++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4667777777765432 2366888888888875 4543 3444333322211 223444444444433
Q ss_pred hhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 373 VYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
....+.++..|..+.-.....|++++|...+++.. ..|+...|..++..+...|+.++|.+.++++.+++|.++ +|.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p-t~~ 490 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN-TLY 490 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-hHH
Confidence 21244456778777777778899999999999854 456888999999999999999999999999999999988 443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00036 Score=57.53 Aligned_cols=101 Identities=11% Similarity=0.076 Sum_probs=82.7
Q ss_pred hhHHHHhhccC--CCCCcccHHHHHHHHHcC-----CCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccC--------
Q 042265 61 LSYALSIFNNI--PYPSTFSYNTIIRAHTLF-----SSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLC-------- 125 (490)
Q Consensus 61 ~~~A~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-------- 125 (490)
+..-...|+.. ...+-.+|..+++.+.+. |..+-....++.|.+.|+.-|..+|+.|++.+=+..
T Consensus 30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence 33445566665 467888999999988754 777778888999999999999999999999875421
Q ss_pred --------CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042265 126 --------SHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 126 --------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 161 (490)
+-+-|++++++|...|+-||.+++..+++.+++.+.
T Consensus 110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 345689999999999999999999999999977664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0015 Score=51.39 Aligned_cols=88 Identities=10% Similarity=0.010 Sum_probs=40.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG 292 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (490)
.+...+...|++++|.++|+.+.... +-+...|..|.-++...|++++|+..|....... +.++..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 33334444555555555555444422 1122333444444444555555555555554444 344444444444444444
Q ss_pred CHHHHHHHHh
Q 042265 293 YINTAIEIFE 302 (490)
Q Consensus 293 ~~~~A~~~~~ 302 (490)
+.+.|++.|+
T Consensus 118 ~~~~A~~aF~ 127 (157)
T PRK15363 118 NVCYAIKALK 127 (157)
T ss_pred CHHHHHHHHH
Confidence 4444444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00073 Score=63.02 Aligned_cols=97 Identities=14% Similarity=0.145 Sum_probs=48.4
Q ss_pred cccHHHHHHHHHcCCCchhHHHHHHHhhhC--CCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 042265 76 TFSYNTIIRAHTLFSSPLNAVVLFSQMRTV--SIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLM 153 (490)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 153 (490)
......++..+....+.+.+..++-+.+.. ....-..|.+++++.|...|..+.+..++..=...|+-||..+++.||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 334444444444444555555555554443 111223344455555555555555555555555555555555555555
Q ss_pred HHHHhcCChHHHHHHHHhc
Q 042265 154 HVYCVFHRLRDAQELFDEI 172 (490)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~ 172 (490)
+.+.+.|++..|.++...|
T Consensus 146 d~fl~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEM 164 (429)
T ss_pred HHHhhcccHHHHHHHHHHH
Confidence 5555555555555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0012 Score=61.54 Aligned_cols=116 Identities=12% Similarity=0.143 Sum_probs=87.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC------CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 042265 176 DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR------DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSA 249 (490)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 249 (490)
+......+++.+....+++.+..++.+.... -..|..++++.|.+.|..++++.+++.=...|+-||..+++.+
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 3334455566666666677777776665422 2446678999999999999999999988889999999999999
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042265 250 LSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC 291 (490)
Q Consensus 250 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (490)
|..+.+.|++..|.++...|...+...+..++...+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999998888887666666666555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0013 Score=49.90 Aligned_cols=82 Identities=20% Similarity=0.143 Sum_probs=38.6
Q ss_pred hhhhcCCHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHhcC
Q 042265 389 LLGRAGLIEEALEMIKKMPMGG-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE---DGGVYKVLADVYANAD 460 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g 460 (490)
++-..|+.++|+.++++....+ -...+-.+...+...|++++|..++++.....|+ +......++.++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 3444445555555444432211 1223334444455555555555555555554444 3333344444555555
Q ss_pred ChHHHHHHHH
Q 042265 461 RWEDVVKIRR 470 (490)
Q Consensus 461 ~~~~A~~~~~ 470 (490)
+.++|++.+-
T Consensus 90 r~~eAl~~~l 99 (120)
T PF12688_consen 90 RPKEALEWLL 99 (120)
T ss_pred CHHHHHHHHH
Confidence 5555555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.021 Score=49.94 Aligned_cols=65 Identities=12% Similarity=-0.026 Sum_probs=45.0
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccH----HHHHHHHhccCCcHHHHHHHHHHHHhC
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSF----PFLLRACSQLCSHSLAQTIHSQVLKLG 141 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~g 141 (490)
+...+-.....+.+.|++++|++.|+.+...- |+.... -.+..++.+.++++.|...+++..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33333344555677889999999999988753 443322 345567788889999999999888864
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.011 Score=50.11 Aligned_cols=138 Identities=9% Similarity=0.060 Sum_probs=103.0
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCh-----hhHHH
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDS-----FLSTG 283 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 283 (490)
...+.++..+.-.|.+.-....+.+.++...+.+......+++.-.+.||.+.|..+|+...+..-..+. .+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3456777788888899999999999998876778888888999999999999999999988765333333 33334
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 042265 284 LVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTIL 348 (490)
Q Consensus 284 l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 348 (490)
....|.-.+++..|...+.++... ++..-|.-.-+..-.|+..+|++.++.|++. .|...+-+
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 444566778888999999887754 4555565555666778999999999999885 44444433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.002 Score=50.99 Aligned_cols=85 Identities=11% Similarity=-0.019 Sum_probs=62.2
Q ss_pred hhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHH
Q 042265 390 LGRAGLIEEALEMIKKMP--MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVK 467 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 467 (490)
+...|++++|..+|+-+. ...+..-|..|..++...+++++|+..|..+..+.++||..+...+.+|...|+.+.|..
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence 446677777777777643 223666667777777777888888888888777777777777788888888888888888
Q ss_pred HHHHHhc
Q 042265 468 IRRSLDA 474 (490)
Q Consensus 468 ~~~~m~~ 474 (490)
.|+...+
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7777665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0032 Score=47.72 Aligned_cols=90 Identities=18% Similarity=0.104 Sum_probs=54.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC---ChhhHHHHHHH
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPD--NIALVSALSACARLGELEQGKNIHRYIELNQIRV---DSFLSTGLVDF 287 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~ 287 (490)
.+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++...... +. +......+..+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHH
Confidence 345566777888888888888877775543 2345556677777778888877777776542 11 12222223334
Q ss_pred HHhcCCHHHHHHHHhc
Q 042265 288 YAKCGYINTAIEIFES 303 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~ 303 (490)
+...|+.++|.+.+-.
T Consensus 85 L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 5555666665555433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0029 Score=52.01 Aligned_cols=80 Identities=13% Similarity=0.029 Sum_probs=48.2
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKP--DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
..|..++..+...|++++|+..|++.......| ...++..+..++...|+.++|...++...... +.....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 455666666777777777777777776543222 12356666677777777777777777766553 333344444444
Q ss_pred HHH
Q 042265 287 FYA 289 (490)
Q Consensus 287 ~~~ 289 (490)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00087 Score=60.04 Aligned_cols=129 Identities=14% Similarity=0.091 Sum_probs=100.1
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh-cCCHHHHHHHHhhCCC-CC-CHHHHHHHHHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR-AGLIEEALEMIKKMPM-GG-DVFVWSGLLGG 421 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~ 421 (490)
.+|..++....+.+..+.|..+|.++.+ ....+..+|-.....-.. .++.+.|.++|+.... -| +...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4678888888899999999999999986 444455666666555334 5667779999998652 23 88889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDG---GVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+...++.+.|..+|++++..-|.+. .+|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999655443 58899999999999999999999888764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00011 Score=41.44 Aligned_cols=33 Identities=24% Similarity=0.603 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHhcCChHHHH
Q 042265 434 AAEHVMKLKPEDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
+++++++++|+++.+|..++.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 368899999999999999999999999999986
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00042 Score=47.13 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=48.9
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHG-NVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 443 (490)
+..|..+...+...|++++|+..|++.. ..| ++..|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566677777777788888888777643 233 6778888888888888 68899999988888877
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00016 Score=49.00 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=29.3
Q ss_pred hcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 392 RAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
..|++++|++.|+++. ..| +...+..++.+|.+.|++++|.++++++....|+++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 59 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNP 59 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHH
Confidence 3455555555555532 222 555555555566666666666666666666555544
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00038 Score=42.22 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
.++..+...|...|++++|+++++++++..|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999988887764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.11 Score=47.10 Aligned_cols=244 Identities=14% Similarity=0.115 Sum_probs=147.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDIKPDNI--ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINT 296 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 296 (490)
.-.|+++.|.+-|+.|... |... ....|.-...+.|+.+.|..+-+..-..- +.-.......+...+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 3456677777777766542 2221 12223333345666666666666655543 3334556666777777777777
Q ss_pred HHHHHhccCC-----CCee--hHHHHHHHH---HHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHH
Q 042265 297 AIEIFESSQE-----KNLF--TWNAMLVGL---AMHGLGRLSLVYFSRMIEARIKPDGV-TILGALVGCSHAGLVDEARK 365 (490)
Q Consensus 297 A~~~~~~~~~-----~~~~--~~~~l~~~~---~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~ 365 (490)
|+++++.-.. ++.. .-..|+.+- .-.-+...|...-.+..+ +.|+-. .-.....++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 7777764332 2221 111222211 112345556555544444 344432 22334567888999999999
Q ss_pred HHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHH--H--HHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 366 LFDEMESVYGVSKELKHYGCMADLLGRAGLIEEA--L--EMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
+++.+-+. .|.+...... .+.+.|+.... . +-++.|+.. +......+..+-...|++..|..--+.+.+.
T Consensus 285 ilE~aWK~---ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~ 358 (531)
T COG3898 285 ILETAWKA---EPHPDIALLY--VRARSGDTALDRLKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAARE 358 (531)
T ss_pred HHHHHHhc---CCChHHHHHH--HHhcCCCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 99998864 4555444322 23455544322 1 223344433 7788888888999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhc-CChHHHHHHHHHHhcC
Q 042265 442 KPEDGGVYKVLADVYANA-DRWEDVVKIRRSLDAG 475 (490)
Q Consensus 442 ~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 475 (490)
.|... .|..|+..-... |+-.++...+-+..+.
T Consensus 359 ~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRES-AYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred Cchhh-HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 99765 888888877654 9999998888776655
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.016 Score=49.31 Aligned_cols=49 Identities=14% Similarity=0.071 Sum_probs=38.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCc---hHHHHHHHHHhcCChHHHH
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDGG---VYKVLADVYANADRWEDVV 466 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 466 (490)
++..|.+.|.+..|..-++.+++..|+.+. +...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 566689999999999999999998888653 4567888899999887554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.13 Score=47.43 Aligned_cols=406 Identities=11% Similarity=0.031 Sum_probs=228.9
Q ss_pred HHHHhhccCC--CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHh
Q 042265 63 YALSIFNNIP--YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKL 140 (490)
Q Consensus 63 ~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 140 (490)
+-+++=++++ +.|+.+|-.||.-+..++..++..+++++|..- .+--...|..-+.+-....++...+.+|.+.+..
T Consensus 27 D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 27 DELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred hHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3446667775 458889999999999999999999999999752 2334456777777777778999999999998876
Q ss_pred CCCCchhHHHHHHHHHHhcCCh------HHHHHHHHhc-----ccC-CchhHHHHHHHH---------HhcCCHHHHHHH
Q 042265 141 GFICDVFVLNSLMHVYCVFHRL------RDAQELFDEI-----LYR-DVVSCNTLIDGY---------VKAGDLAHARQL 199 (490)
Q Consensus 141 g~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~~-----~~~-~~~~~~~l~~~~---------~~~~~~~~a~~~ 199 (490)
. .+...|...++--.+.+.. ....+.|+-. .+| ....|+..+..+ -...+++...+.
T Consensus 106 ~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 S--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred h--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 4 4466666666544443311 1112222222 222 334555554432 233445556666
Q ss_pred HhhCCCC----------CeehHHHHHHHHHh---cC----ChhHHHHHHHHHHh--CCCC----CCHHHHHHHHH-----
Q 042265 200 FDRMPFR----------DAVSWGTLVAGYAQ---SD----QCEEAIQLFCNMMD--LDIK----PDNIALVSALS----- 251 (490)
Q Consensus 200 ~~~~~~~----------~~~~~~~l~~~~~~---~g----~~~~A~~~~~~m~~--~~~~----p~~~~~~~l~~----- 251 (490)
+.++... |-..|..=++.... .| -+-.|...+++... .|.. .+..+++.+-+
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 6665532 11112111111111 01 13345555555543 2222 12223332211
Q ss_pred ------HHHcc-----CC--hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHH
Q 042265 252 ------ACARL-----GE--LEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVG 318 (490)
Q Consensus 252 ------~~~~~-----~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~ 318 (490)
--... |+ .....-++++.... ++....+|--.-..+...++-+.|....+...+-.+...-.+...
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~ 342 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEY 342 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHH
Confidence 10000 00 01111122222222 123334444444445566778888888776554322211111122
Q ss_pred HHHcCChHHHHHHHHHHHH--------------CCCC---------------CCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIE--------------ARIK---------------PDGVTILGALVGCSHAGLVDEARKLFDE 369 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~--------------~~~~---------------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (490)
|...++.+.....|+...+ .+.. --...|...+.+..+..-++.|..+|-+
T Consensus 343 yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k 422 (660)
T COG5107 343 YELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIK 422 (660)
T ss_pred HhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2222222222222221110 0110 1123455566666677778999999999
Q ss_pred hHHhhC-CCCCchHHHHHHhhhhhcCCHHHHHHHHhh-CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHh-hCC-C
Q 042265 370 MESVYG-VSKELKHYGCMADLLGRAGLIEEALEMIKK-MPMGGDVFVW-SGLLGGCRIHGNVEIAEAAAEHVMK-LKP-E 444 (490)
Q Consensus 370 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~-~~p-~ 444 (490)
+.+. + ..+++..+++++..++ .|+..-|.++|+- |...||...| +-.+..+...++-+.|..+|+..++ +.. .
T Consensus 423 ~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q 500 (660)
T COG5107 423 LRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQ 500 (660)
T ss_pred Hhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhh
Confidence 9987 5 6788888999888664 6788899999986 5555655554 4566667888999999999997776 221 1
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 445 DGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
-..+|..++.--..-|+...+..+-++|.+
T Consensus 501 ~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 501 LKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 234888888888889998888877766643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0027 Score=55.90 Aligned_cols=101 Identities=15% Similarity=0.029 Sum_probs=55.3
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC----CHHHHHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSK-ELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG----DVFVWSGLL 419 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~ 419 (490)
.|...+....+.|++++|...|+.+.+.+...+ .+..+..+...|...|++++|...|+.+.. .| ....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444433455677777777777666421111 023445566666666666666666665431 12 344444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 420 GGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 420 ~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
..+...|+.+.|...++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 555566666666666666666666544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0024 Score=57.51 Aligned_cols=128 Identities=11% Similarity=-0.012 Sum_probs=82.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHH---hHHhhCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhhC-------CCCC-CHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDE---MESVYGVSK-ELKHYGCMADLLGRAGLIEEALEMIKKM-------PMGG-DVF 413 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~---~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~ 413 (490)
.|..|...|.-.|+++.|+...+. +.+.+|.+. ....+..+..++.-.|+++.|.+.++.- ..+. .+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555666667888888766543 222234433 2345666777788888888888877652 1111 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh----C--CCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKL----K--PEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+...|...|.-..++++|+.+..+-+.+ . .-...++.+|+.++...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6667777777777888888887775541 1 1123477888888888888888887766544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00072 Score=54.13 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh-----cCCCCCCCce
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD-----AGKIKKNAGC 483 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 483 (490)
.....++..+...|+++.|+..+++++..+|-+...+..++.+|...|+..+|.++|+++. +.|+.|+|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3556677788899999999999999999999999999999999999999999999998875 4588888764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0013 Score=60.76 Aligned_cols=62 Identities=8% Similarity=0.007 Sum_probs=30.1
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhh-CCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKK-MPMGGD-V---FVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
...++.+..+|...|++++|+..|++ +...|+ . .+|..+..+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444555555555555555555544 223332 2 23555555555555555555555555554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.034 Score=47.32 Aligned_cols=136 Identities=15% Similarity=0.007 Sum_probs=103.9
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHH---
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCM--- 386 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l--- 386 (490)
...+.++..+.-.|.+.-.+..+++.++...+-++.....|.+.-.+.||.+.|..+|+...+. .-..+....+.+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 3456677777778889889999999998766667788888888888999999999999988765 333444333333
Q ss_pred --HhhhhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 387 --ADLLGRAGLIEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 387 --~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...|.-.+++.+|...+.++.... ++...|.-.-+..-.|+..+|++.++.+++..|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 334566788899999998876443 666666666666677999999999999999988754
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.003 Score=52.26 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=67.8
Q ss_pred CCCeehHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc----------------CChHHHH
Q 042265 205 FRDAVSWGTLVAGYAQ-----SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARL----------------GELEQGK 263 (490)
Q Consensus 205 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~ 263 (490)
.+|..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|+..+=+. .+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4455566666666654 467777777888888888888888888888876542 2346688
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042265 264 NIHRYIELNQIRVDSFLSTGLVDFYAKCGY 293 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 293 (490)
+++++|+..|+-||..++..+++.+++.+.
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 999999999999999999999998876553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0019 Score=58.20 Aligned_cols=252 Identities=16% Similarity=0.081 Sum_probs=152.3
Q ss_pred HHHHcCCCchhHHHHHHHhhhCCCCCCcc----cHHHHHHHHhccCCcHHHHHHHHHH--HH--hCC-CCchhHHHHHHH
Q 042265 84 RAHTLFSSPLNAVVLFSQMRTVSIPPDFY----SFPFLLRACSQLCSHSLAQTIHSQV--LK--LGF-ICDVFVLNSLMH 154 (490)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~--~~--~g~-~~~~~~~~~li~ 154 (490)
.-+++.|+....+.+|+...+.| .-|.. .|..|.++|.-.+++++|.++...= +. .|- .-.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 34789999999999999999987 33433 3666777777788899988874321 11 110 112233344556
Q ss_pred HHHhcCChHHHHHHHHhcccC---------CchhHHHHHHHHHhcCC--------------------HHHHHHHHhhCC-
Q 042265 155 VYCVFHRLRDAQELFDEILYR---------DVVSCNTLIDGYVKAGD--------------------LAHARQLFDRMP- 204 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~- 204 (490)
.+--.|.+++|.....+-+.- ....+..+...|...|+ ++.|.++|.+-.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 666678888877664433110 12234445555543332 333444443311
Q ss_pred ------CC--CeehHHHHHHHHHhcCChhHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 042265 205 ------FR--DAVSWGTLVAGYAQSDQCEEAIQLFCNMM----DLDIK-PDNIALVSALSACARLGELEQGKNIHRYIEL 271 (490)
Q Consensus 205 ------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 271 (490)
.+ -..+|..|...|.-.|+++.|+..-+.-+ +-|-+ .....+..+.+++.-.|+++.|.+.|+....
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11 23456667777777788888887655432 22222 1234677788888888888888888776443
Q ss_pred c----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---------CCeehHHHHHHHHHHcCChHHHHHHHHHHH
Q 042265 272 N----Q-IRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---------KNLFTWNAMLVGLAMHGLGRLSLVYFSRMI 336 (490)
Q Consensus 272 ~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 336 (490)
. | ........-+|...|.-..++++|+.++.+-.. ....++-+|..+|...|..++|+.+.+.-.
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 2 123344455677778878888888887764321 133466677778888888888777665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.11 Score=50.64 Aligned_cols=73 Identities=8% Similarity=-0.035 Sum_probs=41.4
Q ss_pred CChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCC-CCCCcccHHHHHHHHhccCCcHHHHHHHHH
Q 042265 59 DPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVS-IPPDFYSFPFLLRACSQLCSHSLAQTIHSQ 136 (490)
Q Consensus 59 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (490)
|.+++|.+++-.+.+.|. .|....+-|++-...++++.--... -..-...|+.+...++....+++|.+.|..
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999988876653 3555666677766666654321100 000112355555555555566666555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.083 Score=48.55 Aligned_cols=163 Identities=20% Similarity=0.081 Sum_probs=94.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC-------CeehHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042265 281 STGLVDFYAKCGYINTAIEIFESSQEK-------NLFTWNAMLVGLAM---HGLGRLSLVYFSRMIEARIKPDGVTILGA 350 (490)
Q Consensus 281 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 350 (490)
...++-+|....+++...++++.+... ....-....-++.+ .|+.++|++++..+....-.+++.++..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 334444566666666666666666543 11122233344555 67788888888776555556677777776
Q ss_pred HHHhhc---------cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH----HHHHH---hh-CC------
Q 042265 351 LVGCSH---------AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE----ALEMI---KK-MP------ 407 (490)
Q Consensus 351 ~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~---~~-~~------ 407 (490)
.+.|-. ....++|...|.+.-+ ..|+...--.++..+...|...+ ..++- .. +.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 665421 2236677777776543 33444332223333333333221 12221 11 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 408 MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...+-..+.+++.++.-.|+.++|.+.++++.+..|+.-
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 112667778889999999999999999999999887644
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0048 Score=54.30 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=65.0
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHH
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-MGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG---GVYKVLA 453 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 453 (490)
.|...+..+.+.|++++|...|+.+. ..| .+..+..++..|...|++++|...|+++++..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444455678888888877754 233 235666777778888888888888888887666643 4555567
Q ss_pred HHHHhcCChHHHHHHHHHHhcC
Q 042265 454 DVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.++...|++++|.++++++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888888877654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0007 Score=47.36 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCC---CchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 412 VFVWSGLLGGCRIHGNVEIAEAAAEHVMK----LKPED---GGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
..+++.+...|...|++++|+..++++++ ..+++ ..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34677788888888888888888888886 22222 34677888888888999999888887643
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.045 Score=52.61 Aligned_cols=262 Identities=16% Similarity=0.118 Sum_probs=146.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCC-----------CCCeehHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHH
Q 042265 179 SCNTLIDGYVKAGDLAHARQLFDRMP-----------FRDAVSWGTLVAGYAQSDQ--CEEAIQLFCNMMDLDIKPDNIA 245 (490)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~ 245 (490)
.+.+-+..|...|.+++|.++----. .-+...++..-.+|.+..+ +-+.+.-+++++++|-.|+...
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL 637 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL 637 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH
Confidence 44444555666777776655421111 0022334445556665554 3344555677777887787653
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHH----HHH
Q 042265 246 LVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVG----LAM 321 (490)
Q Consensus 246 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~----~~~ 321 (490)
+...|+-.|++.+|.++|.+- |. -+..+++|...+.++.|.+++...... .-..|+.- ...
T Consensus 638 ---lA~~~Ay~gKF~EAAklFk~~---G~------enRAlEmyTDlRMFD~aQE~~~~g~~~---eKKmL~RKRA~WAr~ 702 (1081)
T KOG1538|consen 638 ---LADVFAYQGKFHEAAKLFKRS---GH------ENRALEMYTDLRMFDYAQEFLGSGDPK---EKKMLIRKRADWARN 702 (1081)
T ss_pred ---HHHHHHhhhhHHHHHHHHHHc---Cc------hhhHHHHHHHHHHHHHHHHHhhcCChH---HHHHHHHHHHHHhhh
Confidence 455667788888888887643 21 123456666666677776666543321 11111100 001
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHH
Q 042265 322 HGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALE 401 (490)
Q Consensus 322 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 401 (490)
.+++..|-+++ +..|- ....+..+...|-.+.+.++-+++-. .+..+...+..-+.+...+.-|-+
T Consensus 703 ~kePkaAAEmL---iSaGe------~~KAi~i~~d~gW~d~lidI~rkld~-----~ere~l~~~a~ylk~l~~~gLAae 768 (1081)
T KOG1538|consen 703 IKEPKAAAEML---ISAGE------HVKAIEICGDHGWVDMLIDIARKLDK-----AEREPLLLCATYLKKLDSPGLAAE 768 (1081)
T ss_pred cCCcHHHHHHh---hcccc------hhhhhhhhhcccHHHHHHHHHhhcch-----hhhhHHHHHHHHHhhccccchHHH
Confidence 12222222111 11110 01112223344444444444444333 344455556666667778888999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC----------chHHHHHHHHHhcCChHHHHHHHHH
Q 042265 402 MIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG----------GVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
+|++|.+. ..++......+++.+|..+.++.-+..|+-. .-|...-.+|.++|+-.||..++++
T Consensus 769 IF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 769 IFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred HHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 99988754 3456667889999999999998877655421 2344555778889999999999988
Q ss_pred HhcC
Q 042265 472 LDAG 475 (490)
Q Consensus 472 m~~~ 475 (490)
+...
T Consensus 843 Ltnn 846 (1081)
T KOG1538|consen 843 LTNN 846 (1081)
T ss_pred hhhh
Confidence 7644
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.21 Score=45.38 Aligned_cols=284 Identities=15% Similarity=0.031 Sum_probs=137.9
Q ss_pred cHHHHHHHHHc--CCCchhHHHHHHHhhhCCCCCCcccHHHHHHHH--hccCCcHHHHHHHHHHHHhCCCCchhH--HHH
Q 042265 78 SYNTIIRAHTL--FSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRAC--SQLCSHSLAQTIHSQVLKLGFICDVFV--LNS 151 (490)
Q Consensus 78 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 151 (490)
-|..|-.++.. .|+-..|.++-.+..+. +..|......++.+- .-.|+++.|.+-|+.|.. .|.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHH
Confidence 45555554443 35555565555544322 334444455554432 334777777777777764 222221 112
Q ss_pred HHHHHHhcCChHHHHHHHHhccc--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCee--hHHHHHHHHH--
Q 042265 152 LMHVYCVFHRLRDAQELFDEILY--R-DVVSCNTLIDGYVKAGDLAHARQLFDRMP-----FRDAV--SWGTLVAGYA-- 219 (490)
Q Consensus 152 li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~--~~~~l~~~~~-- 219 (490)
|.----+.|+.+.|..+-++... | -.-.+...+...+..|+++.|+++++.-. +++.. .-..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 22223345666666666555522 2 22355566666666677777766665433 22211 1111211111
Q ss_pred -hcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 042265 220 -QSDQCEEAIQLFCNMMDLDIKPDNIA-LVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTA 297 (490)
Q Consensus 220 -~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 297 (490)
-.-+...|...-.+..+ +.||... -.....++.+.|+..++-.+++.+-+....| .+.... .+.+.|+....
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP--~ia~lY--~~ar~gdta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP--DIALLY--VRARSGDTALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh--HHHHHH--HHhcCCCcHHH
Confidence 11234444444333333 3444432 2233456667777777777777776664333 222221 23344432221
Q ss_pred H----HHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-ccCcHHHHHHHHHHhHH
Q 042265 298 I----EIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS-HAGLVDEARKLFDEMES 372 (490)
Q Consensus 298 ~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~ 372 (490)
. +-++.|...+..+......+-...|++..|..--+.... ..|....|..+.+.-. ..||-.++...+.+..+
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1 223444445555555556666666666666555444443 3555556655555432 34666666666666655
Q ss_pred h
Q 042265 373 V 373 (490)
Q Consensus 373 ~ 373 (490)
.
T Consensus 392 A 392 (531)
T COG3898 392 A 392 (531)
T ss_pred C
Confidence 3
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.025 Score=49.41 Aligned_cols=111 Identities=14% Similarity=0.045 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc---CCHHHHHHHHhhCC-CCC-CHHHH
Q 042265 341 KPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA---GLIEEALEMIKKMP-MGG-DVFVW 415 (490)
Q Consensus 341 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~-~~~-~~~~~ 415 (490)
+-|...|..|...|...|+.+.|..-|....+ -.++++..+..+..++... ....++..+|+++. ..| ++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34778899999999999999999999999988 4566677777777766533 23457888998865 333 88888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 416 SGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 416 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
..|...+...|++.+|...++.|++..|.+. ....++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHHH
Confidence 8899999999999999999999999777766 4444443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.31 Score=46.94 Aligned_cols=179 Identities=15% Similarity=0.085 Sum_probs=120.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 042265 277 DSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIK--PDGVTILGAL 351 (490)
Q Consensus 277 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l~ 351 (490)
+..+|...+..-.+.|+.+.+.-+|+...-| -...|-..+.-....|+.+.|..++....+-.++ |....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567788888888899999999999988765 2334555555555568888888887766554332 2223333322
Q ss_pred HHhhccCcHHHHHHHHHHhHHhhCCCCCc-hHHHHHHhhhhhcCCHHHHH---HHHhhCCC-CCCHHHHHH----HHHH-
Q 042265 352 VGCSHAGLVDEARKLFDEMESVYGVSKEL-KHYGCMADLLGRAGLIEEAL---EMIKKMPM-GGDVFVWSG----LLGG- 421 (490)
Q Consensus 352 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~-~~~~~~~~~----l~~~- 421 (490)
+...|++..|..+++.+.+. . |+. ..-..-+....+.|..+.+. .++..... +.+..+... ..+.
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 34578999999999999985 3 443 33333455567888888887 55544332 112222222 2222
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD 460 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (490)
+.-.++.+.|..++.++.+..|++...|..+.......+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 445689999999999999999999988888888776655
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0024 Score=43.92 Aligned_cols=62 Identities=23% Similarity=0.217 Sum_probs=50.2
Q ss_pred hhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 042265 388 DLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVY 449 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 449 (490)
..|.+.+++++|.++++.+.. .| ++..+......+...|++++|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 457788888888888888653 34 777888888889999999999999999999999877443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.21 Score=42.84 Aligned_cols=168 Identities=17% Similarity=0.088 Sum_probs=90.7
Q ss_pred HhcCCHHHHHHHHhccCCCC------eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc------
Q 042265 289 AKCGYINTAIEIFESSQEKN------LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH------ 356 (490)
Q Consensus 289 ~~~~~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~------ 356 (490)
.+.|++++|.+.|+.+.... ..+.-.++.++.+.+++++|+...++....-.......|...|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 34566666666666665421 123334455666777777777777777664322222334444444331
Q ss_pred -cCcH---HHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042265 357 -AGLV---DEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAE 432 (490)
Q Consensus 357 -~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 432 (490)
..|. ..|..-|+.+..+ .|.+..+ .+|..-+..+... -...=..+.+.|.+.|.+..|.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya--------------~dA~~~i~~~~d~-LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR--YPNSRYA--------------PDAKARIVKLNDA-LAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH--CCCCcch--------------hhHHHHHHHHHHH-HHHHHHHHHHHHHHhcChHHHH
Confidence 1222 2334444444442 2222211 1111111111100 0111223456688999999999
Q ss_pred HHHHHHHhhCCCCCc---hHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 433 AAAEHVMKLKPEDGG---VYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 433 ~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
.-++++++-.|+.+. .+..+..+|.+.|..++|.+.-+-+.
T Consensus 188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 999999996665543 55567788999999999888755443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.015 Score=52.72 Aligned_cols=95 Identities=16% Similarity=0.093 Sum_probs=78.8
Q ss_pred hHHHHHHhhhhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 381 KHYGCMADLLGRAGLIEEALEMIKKMP--MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
.++..+..++.+.+++.+|++.-++.. ..+|...+..-..++...|+++.|+..|+++++++|.|..+-..+..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 356778888999999999999888754 334888888889999999999999999999999999999888888877777
Q ss_pred cCChHH-HHHHHHHHhcC
Q 042265 459 ADRWED-VVKIRRSLDAG 475 (490)
Q Consensus 459 ~g~~~~-A~~~~~~m~~~ 475 (490)
..++.+ ..++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 666544 47888888654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.58 Score=46.89 Aligned_cols=166 Identities=10% Similarity=0.022 Sum_probs=109.2
Q ss_pred CCCChhHHHHhhccCCCCCcc----cHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTF----SYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQT 132 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 132 (490)
+..-++-|..+.+.-.- +.. ......+.+-+.|++++|...|-+-... +.| ..++.-+....+...-..
T Consensus 346 kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~ 418 (933)
T KOG2114|consen 346 KKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTS 418 (933)
T ss_pred HhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHH
Confidence 56777777777765432 222 2334445667889999999988876643 223 345666777777888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCc-hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehH
Q 042265 133 IHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDV-VSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSW 211 (490)
Q Consensus 133 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (490)
+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+...+-.. .-....+..+.+.+-.++|..+-.+... +....
T Consensus 419 YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl 496 (933)
T KOG2114|consen 419 YLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVL 496 (933)
T ss_pred HHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHH
Confidence 9999999984 5566667899999999999998888877652211 1244556666666666666655544433 22222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 042265 212 GTLVAGYAQSDQCEEAIQLFCNM 234 (490)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~m 234 (490)
. -.+-..+++++|++++..+
T Consensus 497 ~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 497 D---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred H---HHHHHhcCHHHHHHHHhcC
Confidence 2 2334567788888887765
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.1 Score=50.61 Aligned_cols=159 Identities=16% Similarity=0.078 Sum_probs=103.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHhh----ccCcHHHHHHHHHHhHHhhCCCCCchHH
Q 042265 314 AMLVGLAMHGLGRLSLVYFSRMIEAR-IKPDG-----VTILGALVGCS----HAGLVDEARKLFDEMESVYGVSKELKHY 383 (490)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~m~~~~-~~p~~-----~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 383 (490)
.+++...-.|+-+.+++.+.+..+.+ +.-.. ..|...+..++ ...+.+.|.++++.+.+. .|.+....
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34444445566666666666554422 21111 12333333332 246788899999999884 44344333
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH-HHHH
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMPMGG------DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVL-ADVY 456 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l-~~~~ 456 (490)
-.-.+.+...|++++|++.|++..... ....+-.++..+.-..++++|...+.++.+...-+...|..+ +.++
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 444566778899999999999755321 444566677778889999999999999999766666566544 4455
Q ss_pred HhcCCh-------HHHHHHHHHHhc
Q 042265 457 ANADRW-------EDVVKIRRSLDA 474 (490)
Q Consensus 457 ~~~g~~-------~~A~~~~~~m~~ 474 (490)
...|+. ++|.++++++..
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHH
Confidence 678888 889999888754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.23 Score=42.12 Aligned_cols=60 Identities=20% Similarity=0.092 Sum_probs=37.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIK--PDNIALVSALSACARLGELEQGKNIHRYIELN 272 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
.....+...|++++|.+.|+.+...... -.......++.++.+.|+++.|...++...+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455566777788888888777764211 11234455666777777777777777777665
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0091 Score=54.15 Aligned_cols=64 Identities=8% Similarity=-0.055 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 412 VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
...+..+..++.+.+++..|++..+++++.+|+|..+++.-+.+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3467788889999999999999999999999999999999999999999999999999999764
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.047 Score=42.34 Aligned_cols=86 Identities=20% Similarity=0.157 Sum_probs=58.5
Q ss_pred hhhcCCHHHHHHHHhhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---HHHHHHHHHhcCC
Q 042265 390 LGRAGLIEEALEMIKKMPMG-G----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV---YKVLADVYANADR 461 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~ 461 (490)
..+.|++++|.+.|+.+..+ | ....-..++.+|.+.+++++|...+++.+++.|.++.+ +...+-++.+...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhh
Confidence 34667777777777766532 2 45566668888889999999999999999988887743 3344444444443
Q ss_pred ---------------hHHHHHHHHHHhcC
Q 042265 462 ---------------WEDVVKIRRSLDAG 475 (490)
Q Consensus 462 ---------------~~~A~~~~~~m~~~ 475 (490)
..+|..-|++++++
T Consensus 100 ~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 100 GSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 66777777777654
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.91 Score=45.00 Aligned_cols=382 Identities=11% Similarity=-0.011 Sum_probs=172.5
Q ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC------CC------Ccc-----cH
Q 042265 17 HQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP------YP------STF-----SY 79 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~------~~~-----~~ 79 (490)
+.|-+|+...+ -+ -.|..-..|+..-.|. -.+. +.-++++-.++-+.+. .+ +.. +-
T Consensus 368 ~aV~~CI~aA~-~e--f~pe~QK~LL~AAsfG---k~~l-~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~ 440 (829)
T KOG2280|consen 368 KAVDDCIEAAC-DE--FQPEEQKSLLRAASFG---KASL-RTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSE 440 (829)
T ss_pred HHHHHHHHHhh-hc--cCHHHHHHHHHHHhhc---cccc-ccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhch
Confidence 45666776666 45 6677777777665522 2222 4455555544443321 11 111 22
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCc--HHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 042265 80 NTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSH--SLAQTIHSQVLKLGFICDVFVLNSLMHVYC 157 (490)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 157 (490)
..+|+-+...+.+..|+++-+.+...-... ...|..+...+.+..+. +.+.+..++-..... -....|..+.+...
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay 518 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAY 518 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHH
Confidence 345666677777777777776665321111 34555555555544321 222222222222211 23345566666666
Q ss_pred hcCChHHHHHHHHhcccC--------CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-CeehHHHHHHHHHhcCChhHHH
Q 042265 158 VFHRLRDAQELFDEILYR--------DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR-DAVSWGTLVAGYAQSDQCEEAI 228 (490)
Q Consensus 158 ~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 228 (490)
..|+.+-|..+++.=... +..-+..-+.-..+.||.+-...++-.+... +...+ +.-..+...|.
T Consensus 519 ~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l------~~~l~~~p~a~ 592 (829)
T KOG2280|consen 519 QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL------FMTLRNQPLAL 592 (829)
T ss_pred hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH------HHHHHhchhhh
Confidence 777777777776543211 2223333444445555555555544433211 11111 11112233344
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHH-HHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHH--------
Q 042265 229 QLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIH-RYIELN-QIRVDSFLSTGLVDFYAKCGYINTAI-------- 298 (490)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~-------- 298 (490)
.+|.+..+.. |.. .+-..|....+......+. +..... .+.+-..........+.+.....-..
T Consensus 593 ~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~k 666 (829)
T KOG2280|consen 593 SLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMK 666 (829)
T ss_pred HHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 4444433211 000 0111121212221111111 110000 01111111222233333332211111
Q ss_pred --HHHhccCC-----CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 042265 299 --EIFESSQE-----KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEME 371 (490)
Q Consensus 299 --~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (490)
.+.+.+.. -...+.+--+.-+...|+..+|.++-.+.+ .||...|..-+.+++..++|++-+++-+...
T Consensus 667 Ll~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 667 LLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 11111111 112233444455566677777766655543 4666666666777777777766554443322
Q ss_pred HhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042265 372 SVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAE 436 (490)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 436 (490)
++.-|.-.+..|.+.|+.++|.+++.+....+ ....+|.+.|++.+|.+..-
T Consensus 743 -------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 743 -------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred -------CCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHH
Confidence 13445556667777777777777777666442 34555666666666655443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.019 Score=49.28 Aligned_cols=113 Identities=11% Similarity=0.047 Sum_probs=85.7
Q ss_pred ChhHHHHhhccCC--CCCcccHHHHHHHHHc-----CCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccC-------
Q 042265 60 PLSYALSIFNNIP--YPSTFSYNTIIRAHTL-----FSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLC------- 125 (490)
Q Consensus 60 ~~~~A~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------- 125 (490)
++--....|...+ +.|-.+|-..+..+.. .+..+-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 49 ~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 49 SLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred cccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHH
Confidence 3444556666666 4677788888877654 3566777788899999999999999999999875532
Q ss_pred ---------CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH-HHHHHHHhc
Q 042265 126 ---------SHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLR-DAQELFDEI 172 (490)
Q Consensus 126 ---------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~ 172 (490)
+-+-++.++++|...|+.||..+-..|++++.+.+..- +..+++-.|
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 23448899999999999999999999999999887643 344444444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.027 Score=48.58 Aligned_cols=99 Identities=19% Similarity=0.094 Sum_probs=63.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC---chHHHHHHhhhhhcCCHHHHHHHHhhCC----CCC-CHHHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKE---LKHYGCMADLLGRAGLIEEALEMIKKMP----MGG-DVFVWSG 417 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~ 417 (490)
.|+..+.. .+.|++..|..-|....+. .+.+ +..+-.|...+...|++++|..+|..+. ..| -+..+.-
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 56665554 3567788888888887773 3332 2334456777777777777777665532 222 4566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDGG 447 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 447 (490)
+.....+.|+.++|...|+++.+..|..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 666677777777777777777777776553
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.054 Score=41.58 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 339 RIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 339 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
...|+..+..+++.+|+..|++..|.++.+.+.+.++++.+..+|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4678888889999999889999999999999988888777777777776643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.25 E-value=1 Score=42.09 Aligned_cols=149 Identities=14% Similarity=-0.028 Sum_probs=82.5
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC--chH
Q 042265 308 NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP---DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE--LKH 382 (490)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 382 (490)
...+|..++..+.+.|.++.|...+.++...+..+ .+.....-+......|+..+|...++..... ....+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34567777888888888888888888877643111 2233334445566778888888888877762 11111 111
Q ss_pred HHHHHhhhhhcCCHHHHHHH-HhhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 383 YGCMADLLGRAGLIEEALEM-IKKMPMGGDVFVWSGLLGGCRIH------GNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
...+...+.. ..+..... ........-...+..+...+... +..+++...|+++.+..|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000122333344444444 788999999999999999888888888877
Q ss_pred HHhc
Q 042265 456 YANA 459 (490)
Q Consensus 456 ~~~~ 459 (490)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.086 Score=49.33 Aligned_cols=158 Identities=13% Similarity=0.054 Sum_probs=101.4
Q ss_pred ehH--HHHHHHHHHc-----CChHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHhhc---------cCcHHHHHHHHHHhH
Q 042265 310 FTW--NAMLVGLAMH-----GLGRLSLVYFSRMIEA-RIKPD-GVTILGALVGCSH---------AGLVDEARKLFDEME 371 (490)
Q Consensus 310 ~~~--~~l~~~~~~~-----~~~~~A~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 371 (490)
..| ...+.+.... ...+.|..+|.+.... .+.|+ ...|..+..++.. ..+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554432 2346677888888722 24554 3455555444321 234556677777777
Q ss_pred HhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 042265 372 SVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVY 449 (490)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 449 (490)
+ -.+.|+.....+..++.-.|+++.|..+|++.. ..| .+.+|......+.-.|+.++|.+.++++++++|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 6 556677777777777777888899999998754 334 666777777777788999999999999999888765432
Q ss_pred H--HHHHHHHhcCChHHHHHHHH
Q 042265 450 K--VLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 450 ~--~l~~~~~~~g~~~~A~~~~~ 470 (490)
. ..+..|+.. ..++|++++-
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHh
Confidence 2 233345444 4566766653
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.55 Score=41.22 Aligned_cols=144 Identities=16% Similarity=0.108 Sum_probs=69.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
....|+..+|...|+........ +......+..+|...|+.+.|..++..+-.. --.........-+..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCC
Confidence 34555666666666655554222 2334444555666666666666666655432 111111111122333333333333
Q ss_pred HHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCCchHHHHHHHHHhcCChHH
Q 042265 399 ALEMIKKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDGGVYKVLADVYANADRWED 464 (490)
Q Consensus 399 A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~ 464 (490)
...+-++....| |...-..+...+...|+.+.|.+.+-.+++ ..-.+..+-..++..+.-.|.-+.
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 333333333334 555555555666666666666666655555 223334455555555555554333
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.019 Score=32.24 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 445 (490)
..+..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456777788888888888888888888888864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.1 Score=41.50 Aligned_cols=89 Identities=8% Similarity=-0.006 Sum_probs=48.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
+...|++++|..+|+-+...+.. +..-+..|..++-..+++++|...|...... ...|+..+-....+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--LKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccCCCCccchHHHHHHHhCCHHH
Confidence 34556666666666665553322 2333444444555566666666666665542 12333334445566666666666
Q ss_pred HHHHHhhCCCCC
Q 042265 399 ALEMIKKMPMGG 410 (490)
Q Consensus 399 A~~~~~~~~~~~ 410 (490)
|...|+....+|
T Consensus 124 A~~~f~~a~~~~ 135 (165)
T PRK15331 124 ARQCFELVNERT 135 (165)
T ss_pred HHHHHHHHHhCc
Confidence 666666555443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.94 Score=41.88 Aligned_cols=29 Identities=14% Similarity=-0.020 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
-..+.+++.++.-.|+.++|.+.++++.+
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 34445555555556666666666666554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.014 Score=32.78 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888888888899988888888886
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.057 Score=43.10 Aligned_cols=71 Identities=18% Similarity=0.146 Sum_probs=44.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCChhhH
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIEL-----NQIRVDSFLS 281 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 281 (490)
+...++..+...|++++|..+++.+.... +.+...+..+|.++...|+...|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455666777777888888777777754 44666777778888888888887777776543 3767766544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.41 Score=45.86 Aligned_cols=132 Identities=12% Similarity=0.067 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChh
Q 042265 146 VFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCE 225 (490)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 225 (490)
....+.++..+-+.|..+.|+++-..- ..-.....+.|+++.|.++.++.. +...|..|.....+.|+++
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHH
Confidence 334566666666666666666553221 123344456677777776666554 4557777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHh
Q 042265 226 EAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFE 302 (490)
Q Consensus 226 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 302 (490)
-|.+.|.+..+ +..|+-.|...|+.+.-.++.+.....|- ++....++.-.|+.++..+++.
T Consensus 365 lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 365 LAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 77777766432 44455556666776666666666555541 3334444445566666555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.02 Score=39.85 Aligned_cols=59 Identities=19% Similarity=0.123 Sum_probs=34.1
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-------C-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-------M-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
+++.+...|...|++++|+..|++.. . .+ ...++..+...+...|++++|++.++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555444321 0 11 245667777777888888888888877765
|
... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.43 Score=36.22 Aligned_cols=141 Identities=9% Similarity=0.028 Sum_probs=86.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
+.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+.+.+.+-. ....++.+|...|.
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK--- 84 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc---
Confidence 34567888888888877663 255566777766666666666667777665532222211 11223444443332
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 042265 399 ALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 478 (490)
+.......+.....+|+-+.-.+++..+.+-+..+|.....++.+|.+.|+..++.+++++.-+.|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455666777888999999999999887644456678999999999999999999999999888874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.25 Score=42.82 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=27.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPED---GGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
|..++...|++++|...|..+.+-.|++ +.++.-|+....+.|+.++|...|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4445555555555555555555533332 23444445555555555555555555443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.55 Score=42.29 Aligned_cols=122 Identities=17% Similarity=0.141 Sum_probs=56.2
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCC----CchHHHHHHhhhhhcCCHHHHHHHHhh-------CCCCC-----CHH
Q 042265 350 ALVGCSHAGLVDEARKLFDEMESVYGVSK----ELKHYGCMADLLGRAGLIEEALEMIKK-------MPMGG-----DVF 413 (490)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~-----~~~ 413 (490)
+..++...+.++++.+.|+...+--.-.. ...++-.|...|.+..++++|.-+..+ ....+ ...
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 33444444555555555555443211111 123445555555555555554433322 11111 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCCc----hHHHHHHHHHhcCChHHHHHHHHH
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDGG----VYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
+...+.-++...|...+|.+..+++.+ +..-|.. ....+++.|...|+.+.|+.-|+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 333344455566666666666666655 2222222 233555666666666655555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.39 Score=42.12 Aligned_cols=129 Identities=16% Similarity=0.095 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHH---HH
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSG---LL 419 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~ 419 (490)
....+... ......|+..+|...|+.... -.+-+...-..++.+|...|+.+.|..++..++..-...-+.. -+
T Consensus 134 ~e~~~~~~-~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 134 EEEALAEA-KELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHHHHHHh-hhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 33344333 335678999999999999988 4555567777899999999999999999999885532222222 22
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 420 GGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 420 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..+.+.....+.. -+++-...+|+|...-..++..+...|+.++|.+.+=.+.++
T Consensus 211 ~ll~qaa~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 211 ELLEQAAATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHhcCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2333333222222 233334578999999999999999999999999987766654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.1 Score=45.03 Aligned_cols=176 Identities=12% Similarity=0.065 Sum_probs=107.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 042265 180 CNTLIDGYVKAGDLAHARQLFDRMPFRD---AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARL 256 (490)
Q Consensus 180 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 256 (490)
...-+..+.+...++-|..+-+.-..+. ..........+.+.|++++|...|-+-+.. +.|. .++.-+...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 3445566666666777766665543221 112333344556778888888888766543 2332 244455566
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCe-ehHHHHHHHHHHcCChHHHHHHHHHH
Q 042265 257 GELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNL-FTWNAMLVGLAMHGLGRLSLVYFSRM 335 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m 335 (490)
..+.+-..+++.+.+.| -.+......|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.++|..+-.+.
T Consensus 411 q~IknLt~YLe~L~~~g-la~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKG-LANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcc-cccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 66666677788888877 34556667788888888888888888877663221 12455566666666666666555443
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHh
Q 042265 336 IEARIKPDGVTILGALVGCSHAGLVDEARKLFDEM 370 (490)
Q Consensus 336 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (490)
.. +......+++ ..+++++|.++++.+
T Consensus 490 ~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred cc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 22 3334444433 567888888887665
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.12 Score=39.65 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCChhhHHHHHH
Q 042265 238 DIKPDNIALVSALSACARLGELEQGKNIHRYIELN-QIRVDSFLSTGLVD 286 (490)
Q Consensus 238 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 286 (490)
...|+..+..+++.+++..|++..|.++.+...+. +++.+..+|..|++
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 35677778888888888888888888877776654 66666677776665
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.27 Score=38.26 Aligned_cols=115 Identities=12% Similarity=-0.009 Sum_probs=55.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc
Q 042265 316 LVGLAMHGLGRLSLVYFSRMIEARIK--PDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA 393 (490)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (490)
.....+.|++++|.+.|+.+...-.. -....-..++.++.+.+++++|...+++..+.+...|+. -|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 33444556666666666666554111 122334445555666666666666666666543333332 233333333222
Q ss_pred CCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 394 GLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...+..+.-+- ..=...+....|..-|+++++..|++.
T Consensus 96 ~~~~~~~~~~~---------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGSLQSFF---------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhHHhhhc---------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 22111111111 000112235688888999999999875
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.68 Score=36.52 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=44.8
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCH
Q 042265 114 FPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDL 193 (490)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (490)
...++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+..+.++. ..+.......++.|.+.+-+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcH
Confidence 3455555555566666666666666655 355566666666666543 2333333331 22333334455555555555
Q ss_pred HHHHHHHhhC
Q 042265 194 AHARQLFDRM 203 (490)
Q Consensus 194 ~~a~~~~~~~ 203 (490)
+++.-++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555554443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.08 Score=49.47 Aligned_cols=62 Identities=11% Similarity=0.008 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCc----hHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKEL----KHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
+...+..+..+|.+.|++++|...|++..+. .|+. ..|..+..+|...|+.++|++.+++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555666666666666666666665542 2322 235556666666666666666666544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.2 Score=41.41 Aligned_cols=81 Identities=7% Similarity=-0.023 Sum_probs=56.4
Q ss_pred chhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCC------CCcccHHHHHHH
Q 042265 12 TIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPY------PSTFSYNTIIRA 85 (490)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~ 85 (490)
..+.+..|++.-+.. ++ .+..+|...+..+. . ..|+.+...+.|++... -+...|...|..
T Consensus 94 ~~~~s~~Vfergv~a--ip--~SvdlW~~Y~~f~~-n--------~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~ 160 (577)
T KOG1258|consen 94 NAENSVKVFERGVQA--IP--LSVDLWLSYLAFLK-N--------NNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEF 160 (577)
T ss_pred hHHHHHHHHHHHHHh--hh--hHHHHHHHHHHHHh-c--------cCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHH
Confidence 344455666666654 44 77778888777777 3 66777777777776532 345567788887
Q ss_pred HHcCCCchhHHHHHHHhhhC
Q 042265 86 HTLFSSPLNAVVLFSQMRTV 105 (490)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~ 105 (490)
-..++++.....+|++..+.
T Consensus 161 en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 161 ENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccccHHHHHHHHHHHHhh
Confidence 77888888888888887763
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=2.8 Score=42.54 Aligned_cols=52 Identities=12% Similarity=-0.050 Sum_probs=23.6
Q ss_pred HhhhhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042265 387 ADLLGRAGLIEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHV 438 (490)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 438 (490)
+....+.++++.+...+..|.... ...-..=+..++...|+.++|...|+++
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333335555555555555543211 2222223344444455555555555554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.1 Score=40.53 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=56.3
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-------C--CeehHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHHHH-
Q 042265 284 LVDFYAKCGYINTAIEIFESSQE-------K--NLFTWNAMLVGLAMHGLGRLSLVYFSRMIE----ARIKPDGVTILG- 349 (490)
Q Consensus 284 l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~~~~p~~~~~~~- 349 (490)
+..+....+.++++++.|+...+ + ...++-.|...|.+..++++|.-+..+..+ .++.--...|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44444444555555555544321 1 223455555556666666665554444322 121111111221
Q ss_pred ----HHHHhhccCcHHHHHHHHHHhHHh---hCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhh
Q 042265 350 ----ALVGCSHAGLVDEARKLFDEMESV---YGVSK-ELKHYGCMADLLGRAGLIEEALEMIKK 405 (490)
Q Consensus 350 ----l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (490)
+.-++...|....|.+.-++..+. .|..+ .......+.+.|...|+.+.|+.-++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 223344555555555555544332 12222 223344566667777777776666654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.2 Score=37.93 Aligned_cols=49 Identities=20% Similarity=0.205 Sum_probs=23.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----hCCCCCchHHHHHHHHHhcCChHHHHHH
Q 042265 419 LGGCRIHGNVEIAEAAAEHVMK----LKPEDGGVYKVLADVYANADRWEDVVKI 468 (490)
Q Consensus 419 ~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (490)
+-.+.-..++..|...++..-+ ..|.+..+...|+.+| ..|+.+++..+
T Consensus 197 ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 197 ILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3334444455555555555433 3344444555555444 44454444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.82 Score=43.81 Aligned_cols=158 Identities=15% Similarity=0.120 Sum_probs=109.7
Q ss_pred HHHHHcCCCchhHHHHHH--HhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 042265 83 IRAHTLFSSPLNAVVLFS--QMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFH 160 (490)
Q Consensus 83 i~~~~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 160 (490)
.....-+|+++++.++.+ ++.. .+ +....+.++..+.+.|..+.|+++-. |+. .-.+...+.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg 332 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLG 332 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcC
Confidence 344566788998877775 2221 12 24457888888899999999987643 332 2345567899
Q ss_pred ChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 042265 161 RLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIK 240 (490)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 240 (490)
+++.|.++.++.. +...|..|.....+.|+++-|++.|.+.. -|..|+-.|.-.|+.+.-.++.+.....|
T Consensus 333 ~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~-----d~~~L~lLy~~~g~~~~L~kl~~~a~~~~-- 403 (443)
T PF04053_consen 333 NLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK-----DFSGLLLLYSSTGDREKLSKLAKIAEERG-- 403 (443)
T ss_dssp -HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc-----CccccHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 9999998877765 66699999999999999999999999976 47788888999999988888888877766
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHH
Q 042265 241 PDNIALVSALSACARLGELEQGKNIHRY 268 (490)
Q Consensus 241 p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 268 (490)
-++....++.-.|+.++..+++..
T Consensus 404 ----~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ----DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ----CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 255666677777888888777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.84 Score=43.00 Aligned_cols=144 Identities=14% Similarity=0.028 Sum_probs=95.2
Q ss_pred CHHHHHHHHhccC---CCC---eehHHHHHHHHHH---------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 042265 293 YINTAIEIFESSQ---EKN---LFTWNAMLVGLAM---------HGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA 357 (490)
Q Consensus 293 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~---------~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 357 (490)
..+.|..+|.+.. +-| ...|..+..++.. .....+|.+..++..+.+ .-|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4567888898877 434 3345444443322 123456677777777765 33777777777777788
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhh-CCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 042265 358 GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKK-MPMGG---DVFVWSGLLGGCRIHGNVEIAEA 433 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 433 (490)
++.+.|...|++... -.+.....|........-.|+.++|.+.+++ +...| -.......+..|+.+ ..+.|+.
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 889999999999986 3333445566666667778999999999998 66666 333444444455554 4677777
Q ss_pred HHHHHHh
Q 042265 434 AAEHVMK 440 (490)
Q Consensus 434 ~~~~~~~ 440 (490)
++-+-.+
T Consensus 429 ~~~~~~~ 435 (458)
T PRK11906 429 LYYKETE 435 (458)
T ss_pred HHhhccc
Confidence 7765444
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.59 Score=37.43 Aligned_cols=129 Identities=16% Similarity=0.098 Sum_probs=72.5
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCch-HHHHH-
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGV-TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELK-HYGCM- 386 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l- 386 (490)
..|...++ +.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.. ...|... -...|
T Consensus 60 d~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr 137 (221)
T COG4649 60 DAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR 137 (221)
T ss_pred HHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence 34443333 356677788888888887765432211 1111223345677888888888887754 2222221 11111
Q ss_pred -HhhhhhcCCHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 387 -ADLLGRAGLIEEALEMIKKMPMGG---DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 387 -~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.-.+...|.+++...-.+.+...+ -...-..|.-+-.+.|++.+|.+.|+.+..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 223456677777776666655333 233445566666677777777777777666
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.49 E-value=2.7 Score=40.95 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=33.8
Q ss_pred CHHHHHHHHhhCCC--CCeehHHH-HHHHHHhcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHccCChHHHHHH
Q 042265 192 DLAHARQLFDRMPF--RDAVSWGT-LVAGYAQSDQCEEAIQLFCNMMDLD---IKPDNIALVSALSACARLGELEQGKNI 265 (490)
Q Consensus 192 ~~~~a~~~~~~~~~--~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~ 265 (490)
+.+.|.++++.+.. |+...|.. -.+.+...|+.++|++.|+...... .+.....+--+..++....++++|...
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 44445555554443 33322222 2233444455555555555433210 011122233344444455555555555
Q ss_pred HHHHHHc
Q 042265 266 HRYIELN 272 (490)
Q Consensus 266 ~~~~~~~ 272 (490)
+..+.+.
T Consensus 328 f~~L~~~ 334 (468)
T PF10300_consen 328 FLRLLKE 334 (468)
T ss_pred HHHHHhc
Confidence 5555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.35 Score=42.97 Aligned_cols=48 Identities=23% Similarity=0.162 Sum_probs=20.8
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhh
Q 042265 356 HAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKK 405 (490)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (490)
..|-+++|++.-++..+ -.+.|...-..+...+.-.|++.++.+...+
T Consensus 187 E~g~y~dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HhccchhHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 44444444444444443 2222333333444444444444444444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.085 Score=39.76 Aligned_cols=89 Identities=26% Similarity=0.186 Sum_probs=49.7
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C--C---HHHHHHHHHHHHhcC
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G--D---VFVWSGLLGGCRIHG 426 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~---~~~~~~l~~~~~~~~ 426 (490)
+....|+.+.|++.|.+... -.+.....||.-..++.-.|+.++|+.-+++...- + . -..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34556666666666666665 34455566666666666666666666666553311 1 1 112333333355566
Q ss_pred CHHHHHHHHHHHHhhCC
Q 042265 427 NVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 427 ~~~~a~~~~~~~~~~~p 443 (490)
+.+.|..-|+.+.++..
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 66666666666666544
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.2 Score=36.07 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=15.4
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHhccCCcH
Q 042265 99 FSQMRTVSIPPDFYSFPFLLRACSQLCSHS 128 (490)
Q Consensus 99 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 128 (490)
++.+.+.+++|+...+..+++.+.+.|++.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~ 46 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFS 46 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Confidence 333444455555555555555555555443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.19 Score=44.56 Aligned_cols=160 Identities=10% Similarity=0.038 Sum_probs=117.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHH----HHHhhhhhcCC
Q 042265 320 AMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYG----CMADLLGRAGL 395 (490)
Q Consensus 320 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 395 (490)
--+|+..+|-..++++.+. .+-|...+...=.+|...|+...-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888888889998876 344667777777888999999999999998887 4556665444 44455668999
Q ss_pred HHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----CchHHHHHHHHHhcCChHHHHHHH
Q 042265 396 IEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED----GGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 396 ~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
+++|.+.-++...-+ |...-.+....+...|+.+++.++..+-...-... ...|-..+..+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998865333 77777778888889999999999988765522111 123446666777889999999999
Q ss_pred HHHhcCCCCCCCc
Q 042265 470 RSLDAGKIKKNAG 482 (490)
Q Consensus 470 ~~m~~~~~~~~~~ 482 (490)
+.=.-....++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8766555555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.32 E-value=2.2 Score=40.55 Aligned_cols=146 Identities=9% Similarity=0.094 Sum_probs=69.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG 292 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (490)
.+|.-.-+..+++.-++.-.+.++ +.||..+.-.++ +--......++.+++++..+.+-. . +.+..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-~----------lg~s~ 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-S----------LGKSQ 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-h----------hchhh
Confidence 334444455556666666666555 345543322222 122344567778888777665410 0 00000
Q ss_pred CHHHHHHHHhccCCCC----eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 293 YINTAIEIFESSQEKN----LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIK-PDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 293 ~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
..+..-..++....++ +.+-..+..++-+.|+.++|++.+++|.+.... -+......|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 0000000111111111 222233444555667777777777776653211 12234555666667777777777766
Q ss_pred HHhHH
Q 042265 368 DEMES 372 (490)
Q Consensus 368 ~~~~~ 372 (490)
.+..+
T Consensus 319 ~kYdD 323 (539)
T PF04184_consen 319 AKYDD 323 (539)
T ss_pred HHhcc
Confidence 66543
|
The molecular function of this protein is uncertain. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.31 E-value=7 Score=44.63 Aligned_cols=310 Identities=10% Similarity=-0.018 Sum_probs=174.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhc----ccC--CchhHHHHHHHHHhcCCHHHHHHHHhh-CCCCCeehHHHHHHHHHhcCC
Q 042265 151 SLMHVYCVFHRLRDAQELFDEI----LYR--DVVSCNTLIDGYVKAGDLAHARQLFDR-MPFRDAVSWGTLVAGYAQSDQ 223 (490)
Q Consensus 151 ~li~~~~~~g~~~~A~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 223 (490)
.+..+-.+++.+.+|...+++- .+. ....+-.+...|+..+++|...-+... ...+ ....-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhcc
Confidence 4445666788899999999883 111 112333344478888888888777763 2222 23334555677899
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCCHHHHHHHHh
Q 042265 224 CEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLST-GLVDFYAKCGYINTAIEIFE 302 (490)
Q Consensus 224 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~ 302 (490)
+..|...|+.+.+.+ ++...+++-++......+.++......+-..... .+....++ .=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998865 3446678888887778888877776555444332 33333333 33445567788887777766
Q ss_pred ccCCCCeehHHHH--HHHHHHcCChH--HHHHHHHHHHHCCCCCC---------HHHHHHHHHHhhccCcHHHHHHHHHH
Q 042265 303 SSQEKNLFTWNAM--LVGLAMHGLGR--LSLVYFSRMIEARIKPD---------GVTILGALVGCSHAGLVDEARKLFDE 369 (490)
Q Consensus 303 ~~~~~~~~~~~~l--~~~~~~~~~~~--~A~~~~~~m~~~~~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (490)
..+..+|... +..+.+...-+ .-.+..+.+++.-+.|- ...|..++....-. +.+.-.
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~----- 1613 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSI----- 1613 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHH-----
Confidence 4455555554 23333322211 11123333333211110 01222222221100 001111
Q ss_pred hHHhhCCCCCch------HHHHHHhhhhhcCCHHHHHHHHh----h--CC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 370 MESVYGVSKELK------HYGCMADLLGRAGLIEEALEMIK----K--MP---MGGDVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 370 ~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~----~--~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
....+..++.. .|..-+..-....+..+-+--++ . |. ...-..+|....+.....|+++.|...
T Consensus 1614 -~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~na 1692 (2382)
T KOG0890|consen 1614 -EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNA 1692 (2382)
T ss_pred -HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHH
Confidence 11112222221 11111111111111222111111 1 12 112667899999999999999999999
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 042265 435 AEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 477 (490)
+-.+.+..++ .++...++.+...|+...|+.++++..+...
T Consensus 1693 ll~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1693 LLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9998886653 5789999999999999999999999876543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.30 E-value=1.3 Score=36.92 Aligned_cols=158 Identities=11% Similarity=0.063 Sum_probs=68.5
Q ss_pred eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 309 LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++..|.+-+...-+ ..+.|+ |..+--
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ--~D~~DP--fR~LWL 173 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQ--DDPNDP--FRSLWL 173 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHh--cCCCCh--HHHHHH
Confidence 3456666666666666666666666665543221111111111 22345666666655555444 222233 111111
Q ss_pred hh-hhcCCHHHHHHHH-hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------CchHHHHHHHHHhc
Q 042265 389 LL-GRAGLIEEALEMI-KKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED-------GGVYKVLADVYANA 459 (490)
Q Consensus 389 ~~-~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~ 459 (490)
-+ ...-++.+|..-+ ++.... |..-|...+-.+.- |+.. .+.+++++.....++ ..+|..|++-+...
T Consensus 174 Yl~E~k~dP~~A~tnL~qR~~~~-d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 174 YLNEQKLDPKQAKTNLKQRAEKS-DKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred HHHHhhCCHHHHHHHHHHHHHhc-cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 11 1223344444333 223222 33333333322211 1111 122333333322222 13666777777777
Q ss_pred CChHHHHHHHHHHhc
Q 042265 460 DRWEDVVKIRRSLDA 474 (490)
Q Consensus 460 g~~~~A~~~~~~m~~ 474 (490)
|+.++|..+|+....
T Consensus 251 G~~~~A~~LfKLaia 265 (297)
T COG4785 251 GDLDEATALFKLAVA 265 (297)
T ss_pred ccHHHHHHHHHHHHH
Confidence 777777777765543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.7 Score=37.28 Aligned_cols=221 Identities=19% Similarity=0.087 Sum_probs=116.7
Q ss_pred CChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042265 222 DQCEEAIQLFCNMMDLDIKP-DNIALVSALSACARLGELEQGKNIHRYIELN-QIRVDSFLSTGLVDFYAKCGYINTAIE 299 (490)
Q Consensus 222 g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~ 299 (490)
+....+...+.......... ....+......+...++...+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555554432211 2345556666666667777776666665542 224444555556666666666666766
Q ss_pred HHhccCCC--Ce-ehHHHHHH-HHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 300 IFESSQEK--NL-FTWNAMLV-GLAMHGLGRLSLVYFSRMIEARI--KPDGVTILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 300 ~~~~~~~~--~~-~~~~~l~~-~~~~~~~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
.+...... +. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~- 195 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK- 195 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh-
Confidence 66665542 11 22222233 56666777777777766644211 01222333333334456666666666666665
Q ss_pred hCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 374 YGVSK-ELKHYGCMADLLGRAGLIEEALEMIKKMPMG-GD-VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 374 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
..+. ....+..+...+...++++.|...+...... |+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 -LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2233 3455555666666666666666666554322 22 333444444444555566666666666665554
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.83 Score=34.78 Aligned_cols=137 Identities=10% Similarity=0.050 Sum_probs=71.4
Q ss_pred ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC-CchhHHHHHHHHHhcCCHHHHHHHHh
Q 042265 123 QLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR-DVVSCNTLIDGYVKAGDLAHARQLFD 201 (490)
Q Consensus 123 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 201 (490)
-.|..++..++..+...+. +..-+|-+|--....-+-+-..++++.+-+. |.. .+|++......+-
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis----------~C~NlKrVi~C~~ 80 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS----------KCGNLKRVIECYA 80 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG----------G-S-THHHHHHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch----------hhcchHHHHHHHH
Confidence 3466666666666665532 3333333333333334444445555444221 221 2333333333333
Q ss_pred hCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 042265 202 RMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQI 274 (490)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 274 (490)
.+.. +.......+.....+|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++.+.|+
T Consensus 81 ~~n~-~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 81 KRNK-LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred Hhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3221 33445566777788888888888888876533 67777778888888888888888888888887774
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.072 Score=43.47 Aligned_cols=100 Identities=15% Similarity=0.045 Sum_probs=63.1
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCc-----hHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKEL-----KHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH 425 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 425 (490)
-+.+.|++++|..-|..+... +++.. ..|..-.-++.+.+.++.|+.-..+.. ..| ....+..-..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 366788888888888888873 33332 233334445667777777777665544 233 333344445567777
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 426 GNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
..+++|+.-|+++++.+|....+-...++
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 78888888888888888876544444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.18 Score=43.68 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=69.6
Q ss_pred HHHHhhCC--CCCeehHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC------------
Q 042265 197 RQLFDRMP--FRDAVSWGTLVAGYAQ-----SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLG------------ 257 (490)
Q Consensus 197 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------ 257 (490)
++.|.... ++|..+|-..+..+.. .+..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 33444443 3455556555555543 3556666677788888888888888888888765432
Q ss_pred ----ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042265 258 ----ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGY 293 (490)
Q Consensus 258 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 293 (490)
+-+-++.++++|...|+.||..+-..|++++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 334578899999999999999999999999988775
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=1.8 Score=37.10 Aligned_cols=216 Identities=19% Similarity=0.107 Sum_probs=120.2
Q ss_pred CChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHhccCC-----CCeehHHHHHHHHHHcCChHHHHH
Q 042265 257 GELEQGKNIHRYIELNQIR-VDSFLSTGLVDFYAKCGYINTAIEIFESSQE-----KNLFTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~ 330 (490)
+....+...+......... ............+...+++..+...+..... .....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444444311 1245555666666667777776666655432 233445555555666666777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HhhccCcHHHHHHHHHHhHHhhCC--CCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 331 YFSRMIEARIKPDGVTILGALV-GCSHAGLVDEARKLFDEMESVYGV--SKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 331 ~~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
.+.........+. ........ .+...|+++.+...+.+.... .. ......+......+...++.+.+...+.+..
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7776665433321 11222222 566677777777777776431 11 1222333334444556677777777776644
Q ss_pred CC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 408 MG-G--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 408 ~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.. + ....+..+...+...++++.|...+.......|.....+..+...+...|.++++...+++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 2 2455666666666777777777777777776666444555555555555667777766665543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.6 Score=36.49 Aligned_cols=178 Identities=13% Similarity=-0.008 Sum_probs=98.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCee-hHHHHHH--HHHHcCChHHHHHHHH
Q 042265 257 GELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLF-TWNAMLV--GLAMHGLGRLSLVYFS 333 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~~ 333 (490)
|-++-|..-|.+..... |.-+.+||.|.--+...|+++.|.+.|+...+-|+. -|..+-+ ++--.|++.-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHH
Confidence 33444444444444433 444678888888888999999999999988775442 3333322 2334688888887666
Q ss_pred HHHHCC-CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHH-hhhhhcCCHHHHHHHHhhCCCCC-
Q 042265 334 RMIEAR-IKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMA-DLLGRAGLIEEALEMIKKMPMGG- 410 (490)
Q Consensus 334 ~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~- 410 (490)
+.-+.. -.|-...|.-+.. ..-++.+|..-+.+=-+ + .|..-|...+ ..|.-.=..+.+.+-...-....
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNT 230 (297)
T ss_pred HHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchH
Confidence 665543 2232233333332 23456666544333222 2 2333343322 22222212222222222222111
Q ss_pred -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 411 -----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 411 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
-..||--+..-+...|+.++|..+|+-++..+
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 34577788888999999999999999887744
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.3 Score=34.95 Aligned_cols=126 Identities=13% Similarity=0.052 Sum_probs=71.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG 391 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (490)
...++..+...+.+.....+++.+...+. .+....+.++..|++.+ ..+..+.++. . .+......++..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHH
Confidence 34556666666677777777777766653 45566677777776543 2333333331 1 22233344666666
Q ss_pred hcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 392 RAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIH-GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
+.+.++++.-++.++... ...+..+... ++++.|++++++ +.++..|..++..+.
T Consensus 81 ~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 81 KAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 777777777777766432 2223333333 677777777665 334556666665554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.01 E-value=5.7 Score=41.98 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=18.4
Q ss_pred CCchhHHHHHHHHHHhcC--ChHHHHHHHHhcc
Q 042265 143 ICDVFVLNSLMHVYCVFH--RLRDAQELFDEIL 173 (490)
Q Consensus 143 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~ 173 (490)
.|+ .....+|..|.+.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 444 44456677777766 6666666666554
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.00 E-value=2.6 Score=37.90 Aligned_cols=18 Identities=17% Similarity=-0.106 Sum_probs=12.4
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042265 422 CRIHGNVEIAEAAAEHVM 439 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~ 439 (490)
+.+.++++.|.++|+-.+
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 456777777777777544
|
It is also involved in sporulation []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.90 E-value=2.1 Score=36.58 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHhhccCcHHHHHHH
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEAR---IKPDGVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
|-..|-.+....++..|...++.--+.+ -.-+..+...|+.+| ..||.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3344444555556666666666533321 111334555566655 34555555444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.16 Score=44.74 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
++..++..+...|+++.+...+++..+.+|-+...|..++.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 455566666666677777777777777777666677777777777777777776666654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.72 E-value=3 Score=37.37 Aligned_cols=25 Identities=4% Similarity=0.012 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p 443 (490)
.+.++.+.|.. +|+..+.++.+.+|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 34444444443 35555555554444
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.3 Score=41.91 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=32.6
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 385 CMADLLGRAGLIEEALEMIKKMP-MGG---DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.+..++.+.|+.++|++.++++. ..| ...+...|+.++...+.+.++..++.+.-+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34455556666666666666653 223 333555666666666666666666666544
|
The molecular function of this protein is uncertain. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.26 Score=40.32 Aligned_cols=55 Identities=15% Similarity=0.033 Sum_probs=25.6
Q ss_pred hhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 388 DLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
......|.+++|+..++...... .......-...+...|+-++|...|+++++..
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33444555555555555544432 22222333334555555555555555555543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.1 Score=29.17 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566667777777777777777777777664
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.40 E-value=8.1 Score=40.94 Aligned_cols=140 Identities=11% Similarity=0.067 Sum_probs=78.1
Q ss_pred HHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHH
Q 042265 152 LMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLF 231 (490)
Q Consensus 152 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 231 (490)
.++.-.+.|.+.+|+.++..=.+.-...|.+...-+.+.+.+++|.-.|+...+ ..--+.+|...|+|.+|+.+.
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a 988 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLA 988 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHH
Confidence 333334455555555544333223334455555555666667777666665442 223456667778888887777
Q ss_pred HHHHhCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 042265 232 CNMMDLDIKPDNI--ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK 307 (490)
Q Consensus 232 ~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 307 (490)
.++-.. -+.. +--.|..-+...++.-+|-++..+..+. ....+..|++...|++|.++-....+.
T Consensus 989 ~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~~ 1055 (1265)
T KOG1920|consen 989 AQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKRD 1055 (1265)
T ss_pred HhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcccc
Confidence 665321 1111 1245566666777777777776665433 123444566677777777776655543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.18 Score=38.12 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=75.1
Q ss_pred HhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CCCCC---chHHHHHHHHHhcC
Q 042265 387 ADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL-KPEDG---GVYKVLADVYANAD 460 (490)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~---~~~~~l~~~~~~~g 460 (490)
.-++...|+.+.|++.|.+.. ..| .+..||.-..++.-+|+.++|..-+++++++ .|... .+|..-+..|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 446778999999999998743 344 8899999999999999999999999999993 44332 35667788899999
Q ss_pred ChHHHHHHHHHHhcCCC
Q 042265 461 RWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 461 ~~~~A~~~~~~m~~~~~ 477 (490)
+-+.|..=|+..-+.|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999998877764
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.74 Score=36.88 Aligned_cols=118 Identities=12% Similarity=0.086 Sum_probs=67.3
Q ss_pred HhcCCHHHHHHHHhccCCCCeehHHHHH-----HHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH--HhhccCcH
Q 042265 289 AKCGYINTAIEIFESSQEKNLFTWNAML-----VGLAMHGLGRLSLVYFSRMIEARIKPDGV-TILGALV--GCSHAGLV 360 (490)
Q Consensus 289 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~--~~~~~g~~ 360 (490)
.+.+..++|+.-|..+.+.+...|..|. ....+.|+...|...|++.-.....|-.. -...|-. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445556666666666555444444332 23456677777777777776544344332 1111211 23456777
Q ss_pred HHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 361 DEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
+......+-+... +.+.....-..|.-+-.+.|++.+|..+|..+.
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 7776666666543 444444445566666677788888888887754
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.15 E-value=3.7 Score=38.36 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC----CCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKP----EDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
...+|..++..+.+.|+++.|...+.++....+ ..+.+...-++.+...|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566788888888899999999888888887441 1345677778888888988889888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.1 Score=29.71 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 448 VYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888743
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=4.6 Score=36.23 Aligned_cols=218 Identities=9% Similarity=-0.045 Sum_probs=96.6
Q ss_pred CCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCc----HHHHHHHHHHHHhCCCCchh
Q 042265 72 PYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSH----SLAQTIHSQVLKLGFICDVF 147 (490)
Q Consensus 72 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~----~~a~~~~~~~~~~g~~~~~~ 147 (490)
..+|.......+.++...|. +.+...+..+.+. +|...-...+.++++.|+. +.+...+..+... .++..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~ 106 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC 106 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence 34444455555555555543 2233333333322 3333334444445555542 2344444444222 34455
Q ss_pred HHHHHHHHHHhcCCh-----HHHHHHHHh-cccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhc
Q 042265 148 VLNSLMHVYCVFHRL-----RDAQELFDE-ILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQS 221 (490)
Q Consensus 148 ~~~~li~~~~~~g~~-----~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 221 (490)
+....+.+++..+.. ..+...+.. +..++..+-...+.++++.++.+....+..-+..+|...-...+.++...
T Consensus 107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 107 VRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 554455554444321 122333322 23334445555555555555543333333334444444444444444443
Q ss_pred C-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042265 222 D-QCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEI 300 (490)
Q Consensus 222 g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 300 (490)
+ +...+...+..+.. .++...-...+.++.+.++. .+...+-...+.+. .....+.++...|.. +|...
T Consensus 187 ~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~ 256 (280)
T PRK09687 187 KYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPV 256 (280)
T ss_pred CCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHH
Confidence 2 13345555555443 33445555555666666653 33333333333321 233455566666664 45555
Q ss_pred HhccC
Q 042265 301 FESSQ 305 (490)
Q Consensus 301 ~~~~~ 305 (490)
+..+.
T Consensus 257 L~~l~ 261 (280)
T PRK09687 257 LDTLL 261 (280)
T ss_pred HHHHH
Confidence 55444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.90 E-value=6.2 Score=37.71 Aligned_cols=176 Identities=11% Similarity=0.028 Sum_probs=100.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042265 275 RVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALV 352 (490)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 352 (490)
+.|.....+++..+..+-++.-++.+..++.. .+-..|..+++.|..+ ..++-..+|+++.+..+. |...-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44555666667777666666666666666654 3455677777777776 556667777777775432 3333333444
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCc------hHHHHHHhhhhhcCCHHHHHHHHhhCCCCC----CHHHHHHHHHHH
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKEL------KHYGCMADLLGRAGLIEEALEMIKKMPMGG----DVFVWSGLLGGC 422 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~ 422 (490)
.| ..++.+.+..+|.++..+ +.|.. ..|..+...- ..+.+.-..+..++.... -...+..+-.-|
T Consensus 141 ~y-Ekik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KY-EKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HH-HHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 34 347777777777777663 22311 1333333211 345555555555544221 334445555567
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
....++++|++++.-+++.+-.+.-+...++.-+.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 77778888888888777766555545555554443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.13 Score=29.29 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
+|..|...|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788889999999999999999655
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.86 E-value=5.8 Score=37.29 Aligned_cols=129 Identities=15% Similarity=0.052 Sum_probs=68.9
Q ss_pred CCCChhHHHHhhccCCC---CCccc------HHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHH--hccC
Q 042265 57 TTDPLSYALSIFNNIPY---PSTFS------YNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRAC--SQLC 125 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~---~~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~ 125 (490)
+.+++.+|.++|.++-. .+... -+.++++|..+ +.+.....+....+. .| ...|..+..+. -+.+
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhh
Confidence 67788888888877642 22222 23555665544 344444444444443 23 33444444432 4567
Q ss_pred CcHHHHHHHHHHHHh--CCC------------CchhHHHHHHHHHHhcCChHHHHHHHHhccc--------CCchhHHHH
Q 042265 126 SHSLAQTIHSQVLKL--GFI------------CDVFVLNSLMHVYCVFHRLRDAQELFDEILY--------RDVVSCNTL 183 (490)
Q Consensus 126 ~~~~a~~~~~~~~~~--g~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l 183 (490)
++++|.+.+..-... +.. +|...-+..+.++...|++.++..+++++.+ -+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 777777777665553 211 1122224555666777777777777766632 155566665
Q ss_pred HHHHHh
Q 042265 184 IDGYVK 189 (490)
Q Consensus 184 ~~~~~~ 189 (490)
+-.+++
T Consensus 174 vlmlsr 179 (549)
T PF07079_consen 174 VLMLSR 179 (549)
T ss_pred HHHHhH
Confidence 544443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.85 E-value=4.7 Score=36.19 Aligned_cols=16 Identities=0% Similarity=-0.170 Sum_probs=9.4
Q ss_pred HHHcCChHHHHHHHHH
Q 042265 319 LAMHGLGRLSLVYFSR 334 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~ 334 (490)
+.+.++++.|.++|+-
T Consensus 256 ~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHhhcCHHHHHHHHHH
Confidence 3455666666666653
|
It is also involved in sporulation []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.61 Score=36.43 Aligned_cols=67 Identities=10% Similarity=-0.021 Sum_probs=29.1
Q ss_pred cCCHHHHHHHHhhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 393 AGLIEEALEMIKKMP-MGG---DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 393 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
.++.+++..+++.+. -+| ...++. ...+...|++++|.++++++.+..+..+..-..++.++.-.|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 455555555555443 122 222222 2224455555555555555555444433222333333333443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.12 Score=41.12 Aligned_cols=86 Identities=10% Similarity=0.050 Sum_probs=53.4
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHH
Q 042265 116 FLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAH 195 (490)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 195 (490)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .....++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35566666777777777777777665556677777777778777777777776663322 333445556666666666
Q ss_pred HHHHHhhCC
Q 042265 196 ARQLFDRMP 204 (490)
Q Consensus 196 a~~~~~~~~ 204 (490)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 666655544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.2 Score=30.10 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=12.2
Q ss_pred HHHHHHHhccCCcHHHHHHHHHHHHh
Q 042265 115 PFLLRACSQLCSHSLAQTIHSQVLKL 140 (490)
Q Consensus 115 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 140 (490)
..+...+...|++++|.++++..++.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444444444444444444444444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.75 Score=36.61 Aligned_cols=81 Identities=12% Similarity=-0.068 Sum_probs=50.1
Q ss_pred hHHHHHHhhh---hhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 381 KHYGCMADLL---GRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 381 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
.+.+.|+... .+.++.+++..+++.+. -+| .+..-..-...+...|++.+|+++++.+.+..|..+..-..++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445555543 35678888888887764 334 222222233446778888888888888877777666444555555
Q ss_pred HHhcCC
Q 042265 456 YANADR 461 (490)
Q Consensus 456 ~~~~g~ 461 (490)
+...|+
T Consensus 88 L~~~~D 93 (160)
T PF09613_consen 88 LYALGD 93 (160)
T ss_pred HHHcCC
Confidence 555555
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=1.3 Score=41.48 Aligned_cols=127 Identities=16% Similarity=0.098 Sum_probs=80.0
Q ss_pred HHcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 320 AMHGLGRLSLVYFS-RMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 320 ~~~~~~~~A~~~~~-~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
...|+...|-+-+. .++...-.|+.......| +...|+++.+.+.+..... -+.....+..++++...+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566666655443 344433345544443333 4567888888888777765 444556667777888888888888
Q ss_pred HHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 399 ALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 399 A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
|...-+-|.... ++.+...........|-++++...++++..++|+....+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 887777665332 5555554444555667788888888888887665443333
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.16 E-value=5.3 Score=34.68 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=77.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCCC---------------CeehHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCC
Q 042265 280 LSTGLVDFYAKCGYINTAIEIFESSQEK---------------NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA-RIKPD 343 (490)
Q Consensus 280 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~ 343 (490)
+-..|...|...+++.+..++++++.+. -...|..-|+.|...++-..-..+|++...- ...|.
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345666666666666666666554420 1235666777887777777777777766542 33455
Q ss_pred HHHHHHHHHHh-----hccCcHHHHHHHHHHhHHhhCCCCCc-----hHHHHHHhhhhhcCCHHHHHHHHhhCC-----C
Q 042265 344 GVTILGALVGC-----SHAGLVDEARKLFDEMESVYGVSKEL-----KHYGCMADLLGRAGLIEEALEMIKKMP-----M 408 (490)
Q Consensus 344 ~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~ 408 (490)
+..... |+-| .+.|++++|..-|=++-+.+.-..++ .-|..|..++.+.|- .=|+.-. .
T Consensus 227 PlImGv-IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKN 300 (440)
T KOG1464|consen 227 PLIMGV-IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKN 300 (440)
T ss_pred hHHHhH-HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCC
Confidence 544443 3444 35677887765544444433222222 124445555555441 1111111 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042265 409 GGDVFVWSGLLGGCRIHGNVEIAEAAAEH 437 (490)
Q Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 437 (490)
.|.......++.+|..+ +..+-+++++.
T Consensus 301 dPEIlAMTnlv~aYQ~N-dI~eFE~Il~~ 328 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQNN-DIIEFERILKS 328 (440)
T ss_pred CHHHHHHHHHHHHHhcc-cHHHHHHHHHh
Confidence 22444556677776543 44444444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.2 Score=36.78 Aligned_cols=92 Identities=13% Similarity=0.022 Sum_probs=53.4
Q ss_pred hHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCCchHH---
Q 042265 381 KHYGCMADLLGRAGLIEEALEMIKKMPMGG-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDGGVYK--- 450 (490)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~--- 450 (490)
..+..+.+.|.+.|+.++|.+.+.++.... -...+-.++......+++..+...+.++.. ..+.+...-+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345566677777777777777777665332 334455666667777777777777777766 1222221111
Q ss_pred -HHHHHHHhcCChHHHHHHHHHH
Q 042265 451 -VLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 451 -~l~~~~~~~g~~~~A~~~~~~m 472 (490)
.-+-.+...+++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 1223344567777777766543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.04 E-value=4.1 Score=33.00 Aligned_cols=134 Identities=10% Similarity=0.071 Sum_probs=89.3
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcC--CHHHHHHHHhhCCCCCe
Q 042265 131 QTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAG--DLAHARQLFDRMPFRDA 208 (490)
Q Consensus 131 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~ 208 (490)
.+++..+.+.+++|+...+..+++.+.+.|++.....++.--+-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 5667777888999999999999999999999998888887665555544433333222211 1344555555553
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELN 272 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
..+..++..+...|++-+|+++.+...... ......++.+..+.+|...-..+++-..+.
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 256677788889999999999887753321 112244566666666766666666655553
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.01 E-value=4.5 Score=33.40 Aligned_cols=90 Identities=9% Similarity=-0.073 Sum_probs=62.7
Q ss_pred HHhhhhhcCCHHHHHHHHhhCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 042265 386 MADLLGRAGLIEEALEMIKKMPMGGDVF-----VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD 460 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (490)
+...+..+|++++|..-++.....+... +--.+.......|.+++|...++...+-.-.. .....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~-~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA-IVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH-HHHHHhhhHHHHcC
Confidence 4556677888888888887765444222 22345556778899999998888765422211 13556688899999
Q ss_pred ChHHHHHHHHHHhcCC
Q 042265 461 RWEDVVKIRRSLDAGK 476 (490)
Q Consensus 461 ~~~~A~~~~~~m~~~~ 476 (490)
+.++|+.-|++....+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999887775
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.01 E-value=11 Score=38.01 Aligned_cols=148 Identities=9% Similarity=-0.006 Sum_probs=83.7
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhCCCCC---CcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 042265 82 IIRAHTLFSSPLNAVVLFSQMRTVSIPP---DFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCV 158 (490)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 158 (490)
-|+.+.+.+.+++|++..+.-.. ..| -.......|..+.-.|+++.|-...-.|.. .+..-|..-+..+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence 35667888888999888776543 233 223456667777777888888777666643 344555555555555
Q ss_pred cCChHHHHHHHHhccc-CCchhHHHHHHHHHhcCCHHHHHHHHhhCC-------------C-------CCeehHHHHHHH
Q 042265 159 FHRLRDAQELFDEILY-RDVVSCNTLIDGYVKAGDLAHARQLFDRMP-------------F-------RDAVSWGTLVAG 217 (490)
Q Consensus 159 ~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------------~-------~~~~~~~~l~~~ 217 (490)
.++......++=.-.. -++..|..++..+.. .+...-.++..+-. + .+...-..|+..
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L 514 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL 514 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence 5554433322222111 145566666666655 33322222222211 0 022334457778
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 042265 218 YAQSDQCEEAIQLFCNMMD 236 (490)
Q Consensus 218 ~~~~g~~~~A~~~~~~m~~ 236 (490)
|...+++..|+..+-.+++
T Consensus 515 Yl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 515 YLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHccChHHHHHHHHhccC
Confidence 8888888888888776643
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.29 Score=28.75 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.+++.+...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666655
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.26 Score=27.08 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 417 GLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 417 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
.+..++.+.|++++|.+.++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555566666666666666665554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.80 E-value=12 Score=37.81 Aligned_cols=167 Identities=11% Similarity=0.060 Sum_probs=100.5
Q ss_pred HHhccCCcHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHH
Q 042265 120 ACSQLCSHSLAQTIHSQVLKLGFIC---DVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHA 196 (490)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 196 (490)
-+.+.+.+++|.++.+... |..| -......+|..+.-.|++++|-...-.|...+..-|...+.-+...++....
T Consensus 365 Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 3445567777776655432 2344 3456788899999999999999999999998888888888888888777665
Q ss_pred HHHHhhCCCC-CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 042265 197 RQLFDRMPFR-DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIR 275 (490)
Q Consensus 197 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 275 (490)
..++-.-... +...|..++..+.. .+. ..|.+.++. -+...|..+-..-+...++ .+. .
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~---Wp~~Lys~l~iisa~~~q~----------~q~--S 502 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE---WPGHLYSVLTIISATEPQI----------KQN--S 502 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh---CChhhhhhhHHHhhcchHH----------Hhh--c
Confidence 5554433332 66788888887777 222 223333321 1222333222111111111 111 1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 042265 276 VDSFLSTGLVDFYAKCGYINTAIEIFESSQEKN 308 (490)
Q Consensus 276 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 308 (490)
-+......|+..|...+++.+|...+-.+.+++
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 112222337778888888888888877776653
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.95 Score=32.25 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 324 LGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 324 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
+.-++.+-++.+....+.|++......+++|.+.+|+..|.++++.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4445667777777788999999999999999999999999999998886423 24445665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.15 E-value=16 Score=37.67 Aligned_cols=217 Identities=12% Similarity=-0.037 Sum_probs=114.6
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCChh-------hHHHH-HHHHHhcCCHHHHHHHHhccCC--------CCeehHHHH
Q 042265 252 ACARLGELEQGKNIHRYIELNQIRVDSF-------LSTGL-VDFYAKCGYINTAIEIFESSQE--------KNLFTWNAM 315 (490)
Q Consensus 252 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l 315 (490)
......++++|..+..++...-..|+.. .++.| .......|+++.|.++.+.... .....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456678888888888776653233222 12222 1233456788888877765443 245667777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHH--HhhccCcH--HHHHHHHHHhHHhhCCCCC-----chHH
Q 042265 316 LVGLAMHGLGRLSLVYFSRMIEARIKPDGVT---ILGALV--GCSHAGLV--DEARKLFDEMESVYGVSKE-----LKHY 383 (490)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~--~~~~~g~~--~~a~~~~~~~~~~~~~~~~-----~~~~ 383 (490)
..+..-.|++++|..+..+..+..-.-+... +..+.. .+..+|+. .+.+..+......+..... ..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 8888889999999888776655321223222 222222 24556633 3333334443332111111 1233
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC-----CCC---CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCCchHHH-
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP-----MGG---DV-FVWSGLLGGCRIHGNVEIAEAAAEHVMK--LKPEDGGVYKV- 451 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~-----~~~---~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~- 451 (490)
..+..++.+ .+.+..-..... ..+ +. ..+..++......|+.+.|...+.++.. ..+....-|..
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 334444443 333333222211 112 11 1223667778889999999999999988 33321112221
Q ss_pred ----HHHHHHhcCChHHHHHHHHH
Q 042265 452 ----LADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 452 ----l~~~~~~~g~~~~A~~~~~~ 471 (490)
-.......|+..+|.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 11223467888888777665
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.11 E-value=2.2 Score=35.22 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=40.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDN--IALVSALSACARLGELEQGKNIHRYIELN 272 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 272 (490)
.+..+...|.+.|+.+.|.+.|.++.+....+.. ..+..+++.....+++..+.....++...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4566677777777777777777777665444332 24456666666677777776666665543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.87 Score=32.82 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 326 RLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 326 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
-+..+-++.+....+.|++......+++|.+.+++..|.++++.++.+.+ +....|..+++-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 35566677777778899999999999999999999999999999988544 333377766653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.95 E-value=15 Score=36.87 Aligned_cols=273 Identities=12% Similarity=0.059 Sum_probs=160.1
Q ss_pred HHHHHHHHhhCCCC-CeehHHHHHHH-----HHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHccC--
Q 042265 193 LAHARQLFDRMPFR-DAVSWGTLVAG-----YAQSDQCEEAIQLFCNMMD-------LDIKPDNIALVSALSACARLG-- 257 (490)
Q Consensus 193 ~~~a~~~~~~~~~~-~~~~~~~l~~~-----~~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 257 (490)
...|.+.++..... +...-..+..+ +....+.+.|+.+|+.+.+ .|. ......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCC
Confidence 45677777665544 33333333332 3355688888888888766 442 224455666665532
Q ss_pred ---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHhccCCC-CeehHHHHHHHHH----HcCChHHH
Q 042265 258 ---ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK-CGYINTAIEIFESSQEK-NLFTWNAMLVGLA----MHGLGRLS 328 (490)
Q Consensus 258 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~A 328 (490)
+.+.|..++....+.| .|+.......+..... -.+...|.++|....+. .+..+-.+..+|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 5677888888888887 5555544333333322 24677888888876653 3334333333332 23477889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh---hh----cCCHHHHHH
Q 042265 329 LVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL---GR----AGLIEEALE 401 (490)
Q Consensus 329 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~ 401 (490)
..++++..+.| .|...--...+..+.. ++++.+.-.+..+... +.......-..+.... .. ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 99999988887 3332222223333333 6666666666665553 3322211111111111 11 235566777
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-C--ChHHHHHHHHHHhc
Q 042265 402 MIKKMPMGGDVFVWSGLLGGCRIH----GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA-D--RWEDVVKIRRSLDA 474 (490)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~ 474 (490)
.+.+....++......+...|..- .+++.|...+.++.... ......++..+... | ++..|.+++++..+
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 777777777777777777775433 46888998888887766 45667777776542 1 25778888877665
Q ss_pred C
Q 042265 475 G 475 (490)
Q Consensus 475 ~ 475 (490)
.
T Consensus 538 ~ 538 (552)
T KOG1550|consen 538 E 538 (552)
T ss_pred c
Confidence 4
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.67 Score=40.92 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=32.3
Q ss_pred CchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhC
Q 042265 91 SPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLG 141 (490)
Q Consensus 91 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 141 (490)
++++++.++..=.+.|+-||..+++.+|..+.+.+++..|.++.-.|....
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 555666666666666666666666666666666666666666655555443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.89 E-value=10 Score=32.95 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=34.8
Q ss_pred HHhhhhhcCCHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 386 MADLLGRAGLIEEALEMIKKMPMGG-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+.+-|.+.|.+..|..-+++|.+.. ....+-.+..+|...|-.++|...-+-+..-.|+++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 4445556666666555555544221 334455566667777777777766665555555554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.87 E-value=11 Score=34.10 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHccCC--hHHHHHHHHHHHHcCCCCChhhHHHHH
Q 042265 225 EEAIQLFCNMMDLDIKPDNI--ALVSALSACARLGE--LEQGKNIHRYIELNQIRVDSFLSTGLV 285 (490)
Q Consensus 225 ~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 285 (490)
+.+..+|+.+.+.|...+.. ..+.++..+....+ ..++..+++.+.+.|+++....|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 44556666666655554332 22333333222222 335666777777777776666655444
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=90.74 E-value=1.8 Score=35.98 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=56.2
Q ss_pred hhhcCCHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCCCchHHHHHHHHHhcCCh
Q 042265 390 LGRAGLIEEALEMIKKMPMGG---DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK----PEDGGVYKVLADVYANADRW 462 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~ 462 (490)
..+.|+ ++|.+.|-.+...| ++.....++..|. ..+.++++.++-+++++. ..|+.++.+|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344444 56777777777666 6666666665555 678999999999999933 23578999999999999999
Q ss_pred HHHH
Q 042265 463 EDVV 466 (490)
Q Consensus 463 ~~A~ 466 (490)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9885
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.55 Score=41.90 Aligned_cols=96 Identities=16% Similarity=-0.015 Sum_probs=71.5
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCH
Q 042265 351 LVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNV 428 (490)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 428 (490)
..-|.++|.+++|+..|..... -.+.++.++..-..+|.+..++..|..-........ -...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 4457889999999999998876 344488888888888999999888877666544221 333455555555567888
Q ss_pred HHHHHHHHHHHhhCCCCCch
Q 042265 429 EIAEAAAEHVMKLKPEDGGV 448 (490)
Q Consensus 429 ~~a~~~~~~~~~~~p~~~~~ 448 (490)
.+|.+-++.++++.|.+...
T Consensus 182 ~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHhHHHHHhhCcccHHH
Confidence 99999999999999986543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.39 Score=26.61 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 447 GVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.++..++.++.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999988654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.37 E-value=2.4 Score=36.21 Aligned_cols=63 Identities=6% Similarity=-0.140 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 413 FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 413 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..+..+..++...|++-++++....+++..|.+..+|..-+.+....=+..+|..=|.++.+.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 344455566666777777777777777777777777777777776666666666666655443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.32 E-value=3.2 Score=36.77 Aligned_cols=75 Identities=15% Similarity=0.121 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCChhhHHHH
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIEL-----NQIRVDSFLSTGL 284 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 284 (490)
++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44455555556666666666666665543 33555666666666666666666666555544 3555555554443
Q ss_pred H
Q 042265 285 V 285 (490)
Q Consensus 285 ~ 285 (490)
.
T Consensus 234 ~ 234 (280)
T COG3629 234 E 234 (280)
T ss_pred H
Confidence 3
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.43 Score=26.75 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=19.2
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 042265 135 SQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQ 166 (490)
Q Consensus 135 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 166 (490)
++.++.. |.+...|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 556666777777777777766664
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.15 E-value=1.2 Score=39.96 Aligned_cols=55 Identities=11% Similarity=0.025 Sum_probs=45.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 316 LVGLAMHGLGRLSLVYFSRMIEARIKP-DGVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
..-|.++|.+++|+.+|.+.... .| |++++..-..+|.+...+..|+.--..+..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45689999999999999987764 55 888888888999999999888877666655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.96 E-value=8.7 Score=30.75 Aligned_cols=107 Identities=17% Similarity=0.096 Sum_probs=51.4
Q ss_pred hccCcHHHHHHHHHHhHHhhCCCCCchH-HHHHHhhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 042265 355 SHAGLVDEARKLFDEMESVYGVSKELKH-YGCMADLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLGGCRIHGNVEIAE 432 (490)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 432 (490)
...++.+.+..++..+.- ..|.... -..-...+...|++.+|.++|+++...+ ....-..|+..|....+-..=.
T Consensus 21 l~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 355677777777777764 2333222 2223344567777788887777766443 2222233333343332222223
Q ss_pred HHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHH
Q 042265 433 AAAEHVMKLKPEDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 433 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
...+++++..+ ++ .-..++..+....+...|.
T Consensus 98 ~~A~evle~~~-d~-~a~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 98 RYADEVLESGA-DP-DARALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHhcCC-Ch-HHHHHHHHHHHhccccchh
Confidence 33444444444 22 2233444444444433333
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.52 Score=24.40 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=17.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH
Q 042265 448 VYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667777888888888877765
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=89.83 E-value=32 Score=37.01 Aligned_cols=245 Identities=11% Similarity=-0.008 Sum_probs=137.6
Q ss_pred CCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh-HHHHHHHHhcccCCchhHHHHHHHH
Q 042265 109 PDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRL-RDAQELFDEILYRDVVSCNTLIDGY 187 (490)
Q Consensus 109 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~l~~~~ 187 (490)
+|...-...+..+.+.+..+ +...+..+++ .++..+-...+..+.+.+.. .....+...+..+|...-...+.++
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL 708 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVL 708 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHH
Confidence 56666666677776666533 4444444443 34555555555555554322 1112222333445666666666666
Q ss_pred HhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHH-HHHHH
Q 042265 188 VKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQ-GKNIH 266 (490)
Q Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~ 266 (490)
...+.-+ ...+...+..+|...-...+.++.+.+..+. +..+.. .++...-.....++...+..+. +...+
T Consensus 709 ~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 5543211 2334455666677666677777776655432 222222 3455555666666666665432 23334
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH-HHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 042265 267 RYIELNQIRVDSFLSTGLVDFYAKCGYINTAI-EIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGV 345 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~ 345 (490)
..+.+ .++..+-...+.++.+.|..+.+. .+...+..++...-...+.++...+. +++...+..+.+ .|+..
T Consensus 781 ~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~ 853 (897)
T PRK13800 781 RALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLD 853 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHH
Confidence 44433 456778888888888888765553 34444555666666667777777765 345566655554 46666
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
.-...+.++.+.+....+...+..+.+
T Consensus 854 VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 854 VRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666777777665334456666666655
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=89.71 E-value=32 Score=36.95 Aligned_cols=47 Identities=11% Similarity=-0.022 Sum_probs=19.5
Q ss_pred cccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHH
Q 042265 172 ILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGY 218 (490)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 218 (490)
+..+|+..-..-+..+.+.++.+....+...+..++...-...+.++
T Consensus 630 L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 630 LADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL 676 (897)
T ss_pred hcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33445555555555555544433223333333333333333333333
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.42 Score=37.87 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=77.3
Q ss_pred HHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 042265 81 TIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFH 160 (490)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 160 (490)
.+++.+.+.+.++.....++.+...+...+....+.++..|++.++.+...++++. .+..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 45677778888888888999888766556677888899999998877888777762 11122345666677777
Q ss_pred ChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCC
Q 042265 161 RLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQ 223 (490)
Q Consensus 161 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 223 (490)
.+++|.-++.++...+.. +..+...++++.|.+...+.. +...|..++..+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~~--~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKVD--DPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGCS--SSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhcC--cHHHHHHHHHHHHhcCc
Confidence 777776665554221100 000112233333333333322 46677777777766654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.76 Score=25.49 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 447 GVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.+|..++.+|...|++++|+..+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46889999999999999999999988754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.05 E-value=0.76 Score=26.85 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=24.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 447 GVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.+++.|+.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3688999999999999999999998764
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.02 E-value=21 Score=35.80 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=62.5
Q ss_pred cHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh---cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 042265 359 LVDEARKLFDEMESVYGVSKELKHYGCMADLLGR---AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIA 431 (490)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 431 (490)
+.+.|..++.+..+. +. |+...+ +...+.. ..+...|.++|......+....+..+...|.. ..+...|
T Consensus 308 d~~~A~~~~~~aA~~-g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 308 DYEKALKLYTKAAEL-GN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred cHHHHHHHHHHHHhc-CC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 566677777777663 32 333222 2222222 23456777777777766666655555554432 3467778
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhc-CChHHHHHHHHHHhcCCCC
Q 042265 432 EAAAEHVMKLKPEDGGVYKVLADVYANA-DRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 478 (490)
..+++++.+.++. .+...+...+.-. ++++.+.-.+..+.+.|.+
T Consensus 384 ~~~~k~aA~~g~~--~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 384 FAYYKKAAEKGNP--SAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHccCh--hhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 8888887776632 2333333332221 6666666666666555543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=88.93 E-value=23 Score=34.14 Aligned_cols=174 Identities=14% Similarity=0.104 Sum_probs=97.0
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
|.....+++..+.....+.-+..+-.+|..-| .+...|..++.+|... ..++-..+|+++.+..+ .|+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44556667777777777777777777777754 4566777788887776 56677777887777652 34444455555
Q ss_pred HHHhcCCHHHHHHHHhccCCC------Ce---ehHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhc
Q 042265 287 FYAKCGYINTAIEIFESSQEK------NL---FTWNAMLVGLAMHGLGRLSLVYFSRMIE-ARIKPDGVTILGALVGCSH 356 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~ 356 (490)
.|.+ ++.+++..+|.++... +. ..|.-+... -..+.+..+.+..+... .|..--...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 6667776666654321 11 122222211 12334444444444433 2222233444444455666
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 357 AGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
..++.+|.+++..+.+ ....|...-..++..
T Consensus 218 ~eN~~eai~Ilk~il~--~d~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILE--HDEKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhh--hcchhhhHHHHHHHH
Confidence 6666677666666665 344444444444443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.85 E-value=0.56 Score=25.67 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 448 VYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++..++.++.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5678899999999999999999998765
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.76 E-value=2.8 Score=29.98 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=38.4
Q ss_pred hHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 042265 94 NAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLM 153 (490)
Q Consensus 94 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 153 (490)
++.+-++.+...++.|++....+.+++|-+.+++..|.++++..+... ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 445555566666677777777888888877888888888877766432 22444555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=88.74 E-value=0.86 Score=24.19 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=14.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042265 415 WSGLLGGCRIHGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 415 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 443 (490)
+..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444444555555555555555554444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.69 E-value=14 Score=31.53 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=9.2
Q ss_pred ccCChHHHHHHHHHH
Q 042265 255 RLGELEQGKNIHRYI 269 (490)
Q Consensus 255 ~~~~~~~a~~~~~~~ 269 (490)
-.+++++|.+++.+.
T Consensus 26 g~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 26 GSNKYEEAAELYERA 40 (288)
T ss_pred CCcchHHHHHHHHHH
Confidence 344677777766654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.68 E-value=4.7 Score=39.29 Aligned_cols=140 Identities=19% Similarity=0.079 Sum_probs=64.6
Q ss_pred CCCcccHHHHHHH-----HHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchh
Q 042265 73 YPSTFSYNTIIRA-----HTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVF 147 (490)
Q Consensus 73 ~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 147 (490)
+-++..|..++.. ..-.|+++.|..++..+. ....+.+...+.++|-.++|+++ .+|..
T Consensus 578 e~nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d 641 (794)
T KOG0276|consen 578 ELNVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPD 641 (794)
T ss_pred ccceEeEeeehHHHHHHHHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChh
Confidence 3445555443332 234566666655443332 22334455555555555555443 22222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHH
Q 042265 148 VLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEA 227 (490)
Q Consensus 148 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 227 (490)
-. .....+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+.. -|..|+-.+...|+.+..
T Consensus 642 ~r---Felal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 642 QR---FELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hh---hhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHH
Confidence 11 12334566776666654442 233345555555555555555555554432 244444445555554444
Q ss_pred HHHHHHHHhCC
Q 042265 228 IQLFCNMMDLD 238 (490)
Q Consensus 228 ~~~~~~m~~~~ 238 (490)
..+-....+.|
T Consensus 712 ~~la~~~~~~g 722 (794)
T KOG0276|consen 712 AVLASLAKKQG 722 (794)
T ss_pred HHHHHHHHhhc
Confidence 44444444333
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.95 Score=36.69 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 428 VEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 428 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
+++|+.-|++++.++|+...++..++.+|...+.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 5677888888888999999999999999887653
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.47 E-value=1.5 Score=27.54 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 042265 416 SGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV 448 (490)
Q Consensus 416 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 448 (490)
..+.-++.+.|++++|.+..+.+++.+|++..+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 346677899999999999999999999998743
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.29 E-value=1.1 Score=24.78 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 447 GVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.+|..++..|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36889999999999999999999987653
|
... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.23 E-value=6 Score=32.78 Aligned_cols=87 Identities=15% Similarity=0.013 Sum_probs=43.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh
Q 042265 318 GLAMHGLGRLSLVYFSRMIEARIKPDG-----VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR 392 (490)
Q Consensus 318 ~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (490)
-+..+|++++|..-|...+..- ++.. ..|..-..++.+.+.++.|+.--.+..+. .+........-..+|.+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYEK 180 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHHh
Confidence 3556666666666666666542 2211 22333334455566666666555555541 11112222222345556
Q ss_pred cCCHHHHHHHHhhCC
Q 042265 393 AGLIEEALEMIKKMP 407 (490)
Q Consensus 393 ~g~~~~A~~~~~~~~ 407 (490)
..++++|++-++++.
T Consensus 181 ~ek~eealeDyKki~ 195 (271)
T KOG4234|consen 181 MEKYEEALEDYKKIL 195 (271)
T ss_pred hhhHHHHHHHHHHHH
Confidence 666666666666554
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=87.96 E-value=4.4 Score=38.26 Aligned_cols=120 Identities=14% Similarity=0.035 Sum_probs=78.3
Q ss_pred HHHHHhcCCHHHHHH-HHhccCC--CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 042265 285 VDFYAKCGYINTAIE-IFESSQE--KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVD 361 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~-~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 361 (490)
|.--...|++..|-+ ++..+.. .++.........+...|+++.+...+...... +.....+...+++...+.|+++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 333445677666644 3333332 24444344444566789999999888766543 3445678888899999999999
Q ss_pred HHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 362 EARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
+|...-..|.. .-..+++............|-++++...|+++.
T Consensus 375 ~a~s~a~~~l~--~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 375 EALSTAEMMLS--NEIEDEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHHHhc--cccCChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 99999888887 333444444444444456678899998888754
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.69 E-value=6.7 Score=34.97 Aligned_cols=100 Identities=17% Similarity=0.091 Sum_probs=72.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC-Ce-----ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 042265 273 QIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK-NL-----FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVT 346 (490)
Q Consensus 273 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~ 346 (490)
|.+....+...++..-....+++++...+-++... +. .+-...++.+ -.=++++++.++..=++.|+.||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 44555666666776666677888888877666532 11 1111222322 33467789999888889999999999
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
+..++..+.+.+++..|.++.-.|..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999888777664
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.46 E-value=39 Score=35.07 Aligned_cols=211 Identities=12% Similarity=0.035 Sum_probs=112.5
Q ss_pred HHhcCChHHHHHHHHhc----ccCCch-------hHHHHHH-HHHhcCCHHHHHHHHhhCCC--------CCeehHHHHH
Q 042265 156 YCVFHRLRDAQELFDEI----LYRDVV-------SCNTLID-GYVKAGDLAHARQLFDRMPF--------RDAVSWGTLV 215 (490)
Q Consensus 156 ~~~~g~~~~A~~~~~~~----~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~ 215 (490)
.....++++|..++.++ ..++.. .|+.+-. .....|++++|+++-+.... .....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888776 222221 3333322 23456888888877665331 1456777888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHccCChHHH--HHHHHHHHHc---CCCC---ChhhHH
Q 042265 216 AGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSAL-----SACARLGELEQG--KNIHRYIELN---QIRV---DSFLST 282 (490)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-----~~~~~~~~~~~a--~~~~~~~~~~---~~~~---~~~~~~ 282 (490)
.+..-.|++++|..+..+..+..-.-+...+.... ..+...|+...+ ...+...... ..+. -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888999999998887776543233443332222 234555633222 2233332222 1111 123344
Q ss_pred HHHHHHHhcCCHHHHHHHHhccC------CCCe----ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----CHHHHH
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQ------EKNL----FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP----DGVTIL 348 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~------~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p----~~~~~~ 348 (490)
.+..++.+ ++.+..-..... .+.. ..+..|+......|+.++|...+.++......+ +..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 333332222211 1211 122356777788899999999988887643333 222222
Q ss_pred HHHHH--hhccCcHHHHHHHHHH
Q 042265 349 GALVG--CSHAGLVDEARKLFDE 369 (490)
Q Consensus 349 ~l~~~--~~~~g~~~~a~~~~~~ 369 (490)
..+.. -...|+.+++.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 22222 2356788777776665
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=87.33 E-value=26 Score=32.94 Aligned_cols=185 Identities=17% Similarity=0.170 Sum_probs=106.4
Q ss_pred cCCHHHHHHHHhccCCC----CeehHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCcHH
Q 042265 291 CGYINTAIEIFESSQEK----NLFTWNAMLVGL-AMHGLGRLSLVYFSRMIEARIKPDG----VTILGALVGCSHAGLVD 361 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~-~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~ 361 (490)
.|+.+++.+.+..+... ....|-.|+.+- ....++..|+++|+...-. .|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 35666666666555432 333455555443 3456777788887776542 3322 23333344456778888
Q ss_pred HHHHHHHHhHHhhCCCCCchHHHH-HHhhh---hhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042265 362 EARKLFDEMESVYGVSKELKHYGC-MADLL---GRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEH 437 (490)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 437 (490)
+...+-......|...|-..-|.. +...+ ....+.+.-..++..|....-...|..+...-.-.|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 877777777665544444333322 22222 23334455556666666444667888888888888999998888888
Q ss_pred HHhhCCCCCchHHHHHHHHH-----hcCChHHHHHHHHHHhcCCCC
Q 042265 438 VMKLKPEDGGVYKVLADVYA-----NADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 438 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~~~~~~ 478 (490)
+..+...+. .-...+..|. -..+.++|.+.++.+....+.
T Consensus 283 A~~L~~~~~-~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~ 327 (421)
T PRK12798 283 ALKLADPDS-ADAARARLYRGAALVASDDAESALEELSQIDRDKLS 327 (421)
T ss_pred HHHhccCCC-cchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence 888543322 3333333332 345577777777666544443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.26 E-value=66 Score=37.54 Aligned_cols=306 Identities=11% Similarity=0.002 Sum_probs=160.4
Q ss_pred HHHHHHhccCCcHHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh-cccCCchhHHHHHHHHHhc
Q 042265 116 FLLRACSQLCSHSLAQTIHSQV----LKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDE-ILYRDVVSCNTLIDGYVKA 190 (490)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~ 190 (490)
.+..+-.+.+.+.+|...++.- .+. ......+..+...|...+++|...-+... ...++ ...-|......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhh
Confidence 3444556778888888888873 221 12233444555589999999988777763 33333 22345556778
Q ss_pred CCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHccCChHHHHHHH
Q 042265 191 GDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVS-ALSACARLGELEQGKNIH 266 (490)
Q Consensus 191 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~ 266 (490)
|+++.|...|+.+... ...+++-++......|.++.+....+-..... .+....++. =..+--+.+++|......
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 9999999999998754 35578888888888888888877665554432 223333322 234445677777766655
Q ss_pred HHHHHcCCCCChhhHHH--HHHHHHhcC--CHHHHHHHHhccCC----C---------CeehHHHHHHHHHHcCChHHHH
Q 042265 267 RYIELNQIRVDSFLSTG--LVDFYAKCG--YINTAIEIFESSQE----K---------NLFTWNAMLVGLAMHGLGRLSL 329 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~A~~~~~~~~~----~---------~~~~~~~l~~~~~~~~~~~~A~ 329 (490)
. .. +..+|.. ++....+.. +.-.-.+.++.+.+ + -...|..++....-..--...
T Consensus 1542 ~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~- 1613 (2382)
T KOG0890|consen 1542 S---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI- 1613 (2382)
T ss_pred h---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH-
Confidence 4 11 1122211 222222211 11111111111110 0 012233333322211110000
Q ss_pred HHHHHHHHCCCCCCH------HHHHHHHHHhhccCcHHHHHHHHHHhHHhhC-----CCCCchHHHHHHhhhhhcCCHHH
Q 042265 330 VYFSRMIEARIKPDG------VTILGALVGCSHAGLVDEARKLFDEMESVYG-----VSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 330 ~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
+.. .+..++. .-|..-+.--....+..+-+--+++..-... -..-..+|....+...++|+++.
T Consensus 1614 ---~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1614 ---EEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred ---HHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 000 1112221 1122222211111111111111111111001 11234577778888888999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 399 ALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
|...+-+.....-+..+-..+......|+...|+.++++.++
T Consensus 1689 A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1689 AQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 988776655444666777778888999999999999999987
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.14 E-value=7.2 Score=32.53 Aligned_cols=73 Identities=11% Similarity=0.002 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCCHHHHH
Q 042265 225 EEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELN---QIRVDSFLSTGLVDFYAKCGYINTAI 298 (490)
Q Consensus 225 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~ 298 (490)
+.|.+.|-++...+.--++.....+...|. ..+.+++..++....+. +-.+|+.++..|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666666554444444444444443 55666677666666554 22456666667777776666666653
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.70 E-value=4.1 Score=36.15 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..+.+-.+|.+.++++.|.++.+.++.+.|+++.-+.-.+..|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 34556666888888999999999888888888877778888888888888888877776554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=86.18 E-value=42 Score=34.22 Aligned_cols=84 Identities=11% Similarity=0.125 Sum_probs=44.4
Q ss_pred CCCchhHHHHHHHhhhCC---CCCCcccHHHHHHHHh--ccCCcHHHHHHHHHHHHhCC---------CCchhHHHHHHH
Q 042265 89 FSSPLNAVVLFSQMRTVS---IPPDFYSFPFLLRACS--QLCSHSLAQTIHSQVLKLGF---------ICDVFVLNSLMH 154 (490)
Q Consensus 89 ~g~~~~A~~~~~~m~~~~---~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~ 154 (490)
.+++..|.+.++.+...- ..|-...+..++.+.. +.+..+.+.+.++.+..... .|...++..+++
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~ 231 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLD 231 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHH
Confidence 367777887777765432 1233333444444432 34555666666665533211 234555666655
Q ss_pred HHH--hcCChHHHHHHHHhc
Q 042265 155 VYC--VFHRLRDAQELFDEI 172 (490)
Q Consensus 155 ~~~--~~g~~~~A~~~~~~~ 172 (490)
.++ ..|+++.+.+.++++
T Consensus 232 l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 232 LCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 544 456666666665555
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.78 E-value=1.4 Score=26.40 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 450 KVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357788888888888888888887554
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.36 E-value=3.3 Score=36.41 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
++......|...|.+.+|.++.+++++.+|-+...+..+...+...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 445566778999999999999999999999999899999999999999777877777764
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.25 E-value=7.1 Score=28.32 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 226 EAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 226 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
+..+-+..+....+.|++....+.+++|.+.+++..|.++++-+.... .+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445556666666777888888888888888888888888887776553 222335655554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.99 E-value=7.8 Score=38.85 Aligned_cols=189 Identities=19% Similarity=0.248 Sum_probs=102.4
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH----------HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNI----------ALVSALSACARLGELEQGKNIHRYIELNQIRVD 277 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 277 (490)
..+-..++..|....+++...++.+.+++. ||.. .|...++--.+-|+-++|..+.-.+++..-+..
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~va 277 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVA 277 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCC
Confidence 345666777788888888888888887762 3221 223333333455777788777766666533333
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA 357 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 357 (490)
+..|. -+|+ +|+.|- +-+.|...+..+.|.++|++.-+ +.|+..+-..+...+...
T Consensus 278 pDm~C-------l~GR------IYKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 278 PDMYC-------LCGR------IYKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred Cceee-------eech------hhhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 33332 2222 111111 01123334555677788877665 456554322222222222
Q ss_pred Cc-HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042265 358 GL-VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAE 436 (490)
Q Consensus 358 g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 436 (490)
|. ++...++ ... | -.|-..+++.|..++..++|+-. + .+.+-.-.+++.+|++..+
T Consensus 334 G~~Fens~El----q~I-g--------mkLn~LlgrKG~leklq~YWdV~-------~---y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 334 GEHFENSLEL----QQI-G--------MKLNSLLGRKGALEKLQEYWDVA-------T---YFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred hhhccchHHH----HHH-H--------HHHHHHhhccchHHHHHHHHhHH-------H---hhhhhhhccCHHHHHHHHH
Confidence 32 1111111 110 1 12334567888888877777532 2 3344455688999999999
Q ss_pred HHHhhCCCCC
Q 042265 437 HVMKLKPEDG 446 (490)
Q Consensus 437 ~~~~~~p~~~ 446 (490)
.|.++.|+..
T Consensus 391 ~mfKLk~P~W 400 (1226)
T KOG4279|consen 391 MMFKLKPPVW 400 (1226)
T ss_pred HHhccCCcee
Confidence 9999888754
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.82 E-value=4 Score=34.80 Aligned_cols=79 Identities=10% Similarity=0.118 Sum_probs=44.3
Q ss_pred CCHHHHHHHHhh-CCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 394 GLIEEALEMIKK-MPMGGDV-FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 394 g~~~~A~~~~~~-~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
.+++.|+..+.+ +...|.. .-|..=+.++.+..+++.+..-..+++++.|+.......++........+++|+..+++
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 334444444433 3344433 23334444555566666666666666666666666666666666666666666666665
Q ss_pred H
Q 042265 472 L 472 (490)
Q Consensus 472 m 472 (490)
.
T Consensus 104 a 104 (284)
T KOG4642|consen 104 A 104 (284)
T ss_pred H
Confidence 5
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.78 E-value=4.3 Score=34.11 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=51.8
Q ss_pred HHHHHhhhhhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 383 YGCMADLLGRAGLIEEALEMIKK-MPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.+.-+..+.+.++.++|+...++ ++.+| +...-..++..++-.|++++|..-++-+-++.|+..
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 44556677788899999988765 66777 777777788889999999999999999988888754
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=84.74 E-value=4 Score=29.19 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCchHHHHHHHHHhcCChH
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE--DGGVYKVLADVYANADRWE 463 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 463 (490)
|......+...+...|++++|++.+-.+++.+|. +...-..++..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 5566666677777777777777777777775443 3445566666666666643
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=84.19 E-value=14 Score=26.83 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=31.9
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 042265 186 GYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIAL 246 (490)
Q Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 246 (490)
.+...|++++|..+.+.+..||...|.+|.. .+.|..+++..-+..|..+| .|....|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 3445566666666666665555555555433 35565666666666666555 3443333
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.55 E-value=0.67 Score=41.49 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=26.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 419 LGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 419 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..++.+.++...|++=+..+++++|+...-|-.-+.+..-.|+|++|...+....+.
T Consensus 155 ~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 155 ASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 333444444444444444444444444444444444444444444444444444433
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.36 E-value=7.6 Score=31.68 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 042265 411 DVFVWSGLLGGCRIHG-----------NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 477 (490)
...++..+..++...+ .+++|...|+++.+.+|.+. .|..-+... ++|-++..++.+++.
T Consensus 68 ~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 68 KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp -HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 3455555555554332 36778888888888999887 776655554 346666666655543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=82.51 E-value=38 Score=30.72 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--cC----cHHHHHHHHHHhHHhhCCC--CCchHHHHHHhhhhhcCCHH
Q 042265 326 RLSLVYFSRMIEARIKPDGVTILGALVGCSH--AG----LVDEARKLFDEMESVYGVS--KELKHYGCMADLLGRAGLIE 397 (490)
Q Consensus 326 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 397 (490)
++.+.+++.|.+.|..-+..+|.+....... .. ....|..+|+.|++.+.+- ++...+..++.. ..++.+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3456677788888877776666553332222 22 3556788888888865442 233333333322 333333
Q ss_pred ----HHHHHHhhCCC----CCCH-HHHHHHHHHHHhcCC--HHHHHHHHHHHHh
Q 042265 398 ----EALEMIKKMPM----GGDV-FVWSGLLGGCRIHGN--VEIAEAAAEHVMK 440 (490)
Q Consensus 398 ----~A~~~~~~~~~----~~~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~ 440 (490)
.+..+++.+.. +++. .....++..+....+ ..++.++++.+.+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~ 210 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK 210 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 34444544432 2333 333333333322222 3466777777766
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=82.26 E-value=15 Score=28.90 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=63.8
Q ss_pred HHHHHHHHHhCCCCCCCch--hHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---------CCCcccHHHHHHH
Q 042265 17 HQIHAHFLTKGLLFLSPCH--ILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---------YPSTFSYNTIIRA 85 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~ 85 (490)
..+..++.+.+ .. ++. ...|.++.-.. ..+++...+++++.+. ..+-.+|+.++.+
T Consensus 22 ~~~~~y~~~~~-~~--~~~k~~fiN~iL~hl~----------~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~S 88 (145)
T PF13762_consen 22 NSHLPYMQEEN-AS--QSTKTIFINCILNHLA----------SYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKS 88 (145)
T ss_pred HHHHHHhhhcc-cC--hhHHHHHHHHHHHHHH----------HccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHH
Confidence 34444455555 43 333 46778888777 7788888888887764 1355677788887
Q ss_pred HHcCCC-chhHHHHHHHhhhCCCCCCcccHHHHHHHHhcc
Q 042265 86 HTLFSS-PLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQL 124 (490)
Q Consensus 86 ~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 124 (490)
..+... ---+..+|.-|++.+.+++..-|..+|.++.+.
T Consensus 89 lsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 89 LSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 765555 334667777777777777777788888876654
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=81.22 E-value=9.7 Score=28.84 Aligned_cols=60 Identities=12% Similarity=0.193 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 327 LSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 327 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
+..+-++.+....+.|++......+++|.+.+|+..|.++|+.++.+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 34455666677788999999999999999999999999999998874 4444445655553
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=81.14 E-value=23 Score=27.39 Aligned_cols=70 Identities=10% Similarity=-0.030 Sum_probs=45.2
Q ss_pred CCchHHHHHHhhhhhcCCH---HHHHHHHhhCCC--CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 042265 378 KELKHYGCMADLLGRAGLI---EEALEMIKKMPM--GG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG 447 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 447 (490)
++..+--.+..++.+..+. .+-+.+|+++.. .| ...-..-+.-++.+.++++++.++.+..++.+|+|..
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4444444455566555443 345566666542 22 3334445666788899999999999999999998773
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.08 E-value=12 Score=31.62 Aligned_cols=59 Identities=15% Similarity=-0.008 Sum_probs=30.3
Q ss_pred HHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHH
Q 042265 80 NTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLK 139 (490)
Q Consensus 80 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 139 (490)
+..++.+.+.++.++++...++-.+.. +.|..+-..++..++-.|++++|..-++..-+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 334455555555555555555544432 23344455555555555666655555544433
|
|
| >cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat | Back alignment and domain information |
|---|
Probab=81.08 E-value=9.1 Score=26.89 Aligned_cols=65 Identities=15% Similarity=0.036 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHH
Q 042265 17 HQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAV 96 (490)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 96 (490)
..++....++| + -+....+.+-..-. ..|+.+.|+++++.++ ..+..|..+++++...|.-.-|.
T Consensus 22 ~~v~d~ll~~~-i---lT~~d~e~I~aa~~----------~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQG-L---LTEEDRNRIEAATE----------NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcC-C---CCHHHHHHHHHhcc----------ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 67888888888 5 34445555555444 5688999999999999 88889999999998888766554
|
Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.89 E-value=13 Score=36.40 Aligned_cols=78 Identities=12% Similarity=-0.077 Sum_probs=39.6
Q ss_pred HHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHH
Q 042265 37 LTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPF 116 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 116 (490)
.-+.+...+- +.|-.++|+.+-. |.. .-.....+.|+++.|.++..+. .+..-|..
T Consensus 616 ~rt~va~Fle----------~~g~~e~AL~~s~-----D~d---~rFelal~lgrl~iA~~la~e~------~s~~Kw~~ 671 (794)
T KOG0276|consen 616 IRTKVAHFLE----------SQGMKEQALELST-----DPD---QRFELALKLGRLDIAFDLAVEA------NSEVKWRQ 671 (794)
T ss_pred hhhhHHhHhh----------hccchHhhhhcCC-----Chh---hhhhhhhhcCcHHHHHHHHHhh------cchHHHHH
Confidence 3455556655 6666666665421 111 1122334555666665554432 13334666
Q ss_pred HHHHHhccCCcHHHHHHHHHHH
Q 042265 117 LLRACSQLCSHSLAQTIHSQVL 138 (490)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~~~ 138 (490)
|.++....+++..|.+.|....
T Consensus 672 Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 672 LGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHhhcccchhHHHHHHhhc
Confidence 6666666666666666655543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.63 E-value=21 Score=34.16 Aligned_cols=101 Identities=16% Similarity=0.042 Sum_probs=55.3
Q ss_pred HHhcCCHHHHHHHHhccCC---C---------CeehHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCCH----
Q 042265 288 YAKCGYINTAIEIFESSQE---K---------NLFTWNAMLVGLAMHGLGRLSLVYFSRMIE-------ARIKPDG---- 344 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~---~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-------~~~~p~~---- 344 (490)
+.-.|++.+|.+++....- + .-..||.|...+.+.|.+..+..+|.+..+ .|+.|..
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4445677777766643321 1 112345555555555666655555555442 3444432
Q ss_pred -------HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh
Q 042265 345 -------VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG 391 (490)
Q Consensus 345 -------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (490)
.+|+.=+ .+...|++-.|.+.|.+... -+..++..|-.|..+|.
T Consensus 330 s~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 330 SQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred hcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 2333322 24567777777777777776 34556666666666654
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.18 E-value=40 Score=29.54 Aligned_cols=59 Identities=5% Similarity=-0.101 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCC----C-------CHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 042265 212 GTLVAGYAQSDQCEEAIQLFCNMMDLDIK----P-------DNIALVSALSACARLGELEQGKNIHRYIE 270 (490)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 270 (490)
.-|...|...+.+.+..++++++..+--. . -...|..-+..|....+-.+...++++..
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 34555555556666666666555432100 0 11244444555555555555555555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.3 bits (178), Expect = 9e-14
Identities = 56/400 (14%), Positives = 110/400 (27%), Gaps = 24/400 (6%)
Query: 95 AVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154
A L R P LL+ S + Q Q + L +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 155 VYCVFHRLRDAQELFDEILYR-------DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR- 206
+ +L A L + + N ++ G+ + G + +
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 207 ---DAVSWGTLVAGYAQSDQCEEAIQ-LFCNMMDLDIKPDNIALVSALSACARLGELEQG 262
D +S+ + + DQ I+ M +K + LS R L+
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 263 KNIHRYIELNQIRVD-SFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAM 321
+ L S L D YAK G ++ + L M
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS-----YPKLHLPLKTLQCLFEKQLHM 310
Query: 322 HGLGRLSLVYFSRM-IEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKEL 380
R+ +V + + ++ L L L R+ + +E V +
Sbjct: 311 ELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLER--EVYEGR 368
Query: 381 KHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440
LL ++ L++++ +P G+ F R + ++
Sbjct: 369 FSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQ 428
Query: 441 LKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKN 480
Y+ + A+ + R+ +A +
Sbjct: 429 ALQNH---YRKYLCLLASDAEVPEPCLPRQYWEALGAPEA 465
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 1e-07
Identities = 59/386 (15%), Positives = 122/386 (31%), Gaps = 86/386 (22%)
Query: 64 ALSIFNNIPYPSTF-SYNTIIRAHTLFSSPLNAVVLF-SQMRTVSIPPDFYSFPFLLRAC 121
L + N+ + ++N + L ++ V F S T I D +S
Sbjct: 246 CLLVLLNVQNAKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 122 SQLCSHSLAQTIHSQVLKL-GFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSC 180
L L + + + L + + + + +RD +D + +
Sbjct: 304 KSL----LLKYLDCRPQDLPREVLTT----NPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 181 NTLIDGYVKAGDLAHARQLFDRMP-FRDAVS---------WGTLVAGYAQSDQCEEAIQL 230
T+I+ + + A R++FDR+ F + W ++ +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----KSDVMVVVNK 410
Query: 231 FCN--MMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRV-DSFLSTGLVD- 286
+++ K I++ S +LE +HR I ++ + +F S L+
Sbjct: 411 LHKYSLVEKQPKESTISIPSIY--LELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPP 467
Query: 287 -----FYAKCGY-INTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFS-RMIEAR 339
FY+ G+ + E + LF +V+ R +E +
Sbjct: 468 YLDQYFYSHIGHHLKNI----EHPERMTLF-----------------RMVFLDFRFLEQK 506
Query: 340 IKPDGVTILGALVGCSHAGLVD--------------EARKLFDEMESVYGVSKELKHYGC 385
I+ D G L R + ++ + + + L
Sbjct: 507 IRHDSTAWNA--SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 386 MADLLGRA------GLIEEALEMIKK 405
DLL A + EEA + +++
Sbjct: 565 T-DLLRIALMAEDEAIFEEAHKQVQR 589
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 40/297 (13%), Positives = 88/297 (29%), Gaps = 32/297 (10%)
Query: 187 YVKAGDLAHARQLFDR----MPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD 242
Y + A++ + ++ LV+ + + E + L N +
Sbjct: 210 YTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268
Query: 243 NIAL---VSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIE 299
+ L+ + EL + ++ I + D L +
Sbjct: 269 AFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT--LFVRSRFIDVLA 326
Query: 300 IFESSQEKNLFTWNAMLV-GLAMHGLGRLS--LVYFSRMIEARIKPDGVTILGALVGC-- 354
I E + + + + ++H G + + + +++ P+ A+ G
Sbjct: 327 ITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAV-GIYY 383
Query: 355 SHAGLVDEARKLFD---EMESVYGVSKELKHYGCMADLLGRAGLIEEALEM----IKKMP 407
+ EAR+ F M+ +G + G A G ++A+ +
Sbjct: 384 LCVNKISEARRYFSKSSTMDPQFGPA----WIG-FAHSFAIEGEHDQAISAYTTAARLFQ 438
Query: 408 MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWED 464
G + L GN+ +A + L D + L V N +
Sbjct: 439 --GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQT 493
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 6e-06
Identities = 29/251 (11%), Positives = 65/251 (25%), Gaps = 19/251 (7%)
Query: 225 EEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTG- 283
++ I + P+ A L Q K E+ +
Sbjct: 16 QQCINEAQRVKPSS--PERDVERDVFLYRAYLA---QRKYGVVLDEIKPSSAPELQAVRM 70
Query: 284 LVDFYAKCGYINTAIEIFESSQEKNLFTWNAML-----VGLAMHGLGRLSLVYFSRMIEA 338
++ A + + + +++ N +L +
Sbjct: 71 FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL 130
Query: 339 RIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398
V IL L +D ARK +M+ + + L +++
Sbjct: 131 ECMAMTVQILLKL------DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184
Query: 399 ALEMIKKM--PMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456
A + ++M + + +G G E AE + + L +
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244
Query: 457 ANADRWEDVVK 467
+ + +V
Sbjct: 245 QHLGKPPEVTN 255
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 67/346 (19%), Positives = 122/346 (35%), Gaps = 46/346 (13%)
Query: 145 DVFVLNSLMHVYCVFHRLRDAQELFDEILY---RDVVSCNTLIDGYVKAGDLAHARQLFD 201
+ VL L ++ RL + + + + L + Y + G L A + +
Sbjct: 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR 91
Query: 202 RM----PFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSAL-SACARL 256
P + L A + E A+Q + + L PD + S L + L
Sbjct: 92 HALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSA--LQYNPDLYCVRSDLGNLLKAL 148
Query: 257 GELEQGKNIHRY-IELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTW 312
G LE+ K + IE ++ + G V + G I AI FE + L +
Sbjct: 149 GRLEEAKACYLKAIETQPNFAVAWSNLGCV--FNAQGEIWLAIHHFEKAVTLDPNFLDAY 206
Query: 313 NAMLVGLAMHGLGRL--SLVYFSRMIEARIKPDGVTILGALVGCSHA--GLVDEARKLFD 368
+ G + ++ + R + + P+ + G L C + GL+D A +
Sbjct: 207 INL--GNVLKEARIFDRAVAAYLRALS--LSPNHAVVHGNL-ACVYYEQGLIDLAIDTYR 261
Query: 369 EMESVYGVSKELK-----HYGCMADLLGRAGLIEEALEM----IKKMPMGGDVFVWSGLL 419
+ EL+ Y +A+ L G + EA + ++ P + L
Sbjct: 262 R-------AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADSLNNL- 311
Query: 420 GGC-RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWED 464
R GN+E A +++ PE + LA V + ++
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 40/323 (12%), Positives = 94/323 (29%), Gaps = 50/323 (15%)
Query: 187 YVKAGDLAHARQLFDR----MPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD 242
+ AG LA A F P + +++ + + + A+ + + +K D
Sbjct: 13 LLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALP-DLTKV-IALKMD 69
Query: 243 NI-ALVSALSACARLGELEQG-KNIHRYIELN-------QIRVDSFLSTGLVDFYAKC-- 291
A + + G+L++ + + ++ N + + + ++
Sbjct: 70 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD 129
Query: 292 ----GYINTAIEIFESSQEKN---LFTWNAMLVGLAMHGLGRLS--LVYFSRMIEARIKP 342
AI + E G + ++K
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRELR--AECFIKEGEPRKAISDLKAAS--KLKS 185
Query: 343 DGVTILGALVGCSHA--GLVDEARKLFD----------EMESVYGVSKELKHYGCMADLL 390
D + + G + + + Y K+L A+ L
Sbjct: 186 DNTEAFYKI-STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEEL 244
Query: 391 GRAGLIEEALEM----IKKMPMGGDVFVWS-GLLGGCRIH-GNVEIAEAAAEHVMKLKPE 444
R G +A +K P + V S + C A V++++P+
Sbjct: 245 IRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304
Query: 445 DGGVYKVLADVYANADRWEDVVK 467
+ K A+ Y + +++ ++
Sbjct: 305 NVNALKDRAEAYLIEEMYDEAIQ 327
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 27/275 (9%), Positives = 68/275 (24%), Gaps = 34/275 (12%)
Query: 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNI-ALVSALSACARLGELEQGKNI 265
V+ + G + + + + C + P + A+ S L +++ +
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQR--LL 126
Query: 266 HRY---IELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGL 319
L +V + S + + + + + + + G
Sbjct: 127 PVLCQAHGLTPEQVVAIASHDGG--KQALETVQALLPVLCQAHGLTPEQVVAIASN--GG 182
Query: 320 AMHGLGRLS--LVYFSRMIEARIKPDGVTILGALVGCSHA-GLVDEARKLFD---EMESV 373
L + L + + P V + + G A V + +
Sbjct: 183 GKQALETVQRLLPVLCQAHG--LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240
Query: 374 YGVSKELKHYGCMADLLGRAGLIEEALEMIKKM----PMGGDVFVWSGLLGGCRIHGNVE 429
V+ ++ L ++ + P V + GG + V+
Sbjct: 241 QVVA-----IASNGGGKQALETVQRLLPVLCQAHGLTP--QQVVAIASNSGGKQALETVQ 293
Query: 430 IAEAAAEHVMKLKPEDGGVYKVLADVYANADRWED 464
L P+ + +
Sbjct: 294 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQR 328
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 6e-04
Identities = 26/192 (13%), Positives = 49/192 (25%), Gaps = 16/192 (8%)
Query: 284 LVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLV-----YFSRMIEA 338
D+ I+ ++ M R + F + E
Sbjct: 327 YADYEESRMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKARED 385
Query: 339 RIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398
V + AL+ + A K+F+ YG E D L
Sbjct: 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEY--VLAYIDYLSHLNEDNN 443
Query: 399 ALEMIKK------MPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV--YK 450
+ ++ +P +W+ L G++ + E+
Sbjct: 444 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETA 503
Query: 451 VLADVYANADRW 462
+L D Y D +
Sbjct: 504 LLVDRYKFMDLY 515
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 490 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.7 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.57 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.57 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.43 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.42 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.41 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.37 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.34 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.22 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.19 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.18 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.18 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.17 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.14 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.12 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.12 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.11 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.09 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.09 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.09 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.08 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.06 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.02 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.0 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.99 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.97 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.97 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.97 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.95 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.94 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.92 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.92 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.9 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.88 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.87 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.87 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.87 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.86 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.86 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.86 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.85 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.84 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.83 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.81 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.79 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.78 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.78 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.77 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.75 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.74 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.72 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.69 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.68 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.67 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.66 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.63 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.63 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.62 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.61 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.6 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.6 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.6 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.58 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.57 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.56 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.56 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.51 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.51 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.49 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.48 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.48 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.47 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.47 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.46 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.46 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.45 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.42 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.39 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.38 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.37 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.37 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.35 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.34 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.31 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.31 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.31 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.3 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.29 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.29 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.29 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.26 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.26 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.25 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.25 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.25 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.22 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.19 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.18 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.15 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.12 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.11 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.1 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.07 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.03 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.01 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.01 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.0 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.97 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.96 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.93 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.88 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.85 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.8 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.76 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.75 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.72 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.67 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.47 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.42 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.42 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.4 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.22 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.19 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.18 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.11 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.07 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.04 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.92 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.79 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.78 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.77 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.76 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.63 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.57 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.56 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.43 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.38 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.21 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.91 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.85 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.45 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.11 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.7 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.7 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 94.52 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.29 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.97 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.7 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.42 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.38 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.01 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 92.47 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 92.45 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 91.92 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.8 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.75 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.38 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.07 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.45 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.36 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.2 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 89.76 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 89.23 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.86 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.71 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 88.2 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.99 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.6 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.39 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 86.47 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.32 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 86.21 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.89 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.45 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.37 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.86 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.39 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 80.21 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=325.24 Aligned_cols=427 Identities=10% Similarity=0.009 Sum_probs=375.6
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP--YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPD 110 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 110 (490)
+++..++.++..|. +.|++++|..+|+++. .|+..+|..++.++.+.|++++|..+|+++... +++
T Consensus 82 ~~~~~~~~~~~~~~----------~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 149 (597)
T 2xpi_A 82 SREDYLRLWRHDAL----------MQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRS 149 (597)
T ss_dssp CHHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTC
T ss_pred HHHHHHHHHHHHHH----------HccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccc
Confidence 67888999999999 8999999999998875 477788899999999999999999999988653 678
Q ss_pred cccHHHHHHHHhccCCcHHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC
Q 042265 111 FYSFPFLLRACSQLCSHSLAQTIHSQVLKL---------------GFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR 175 (490)
Q Consensus 111 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 175 (490)
..+++.++.++.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999999999999853221 23456889999999999999999999999998543
Q ss_pred Cc---hhHHH--------------------------------------HHHHHHhcCCHHHHHHHHhhCCC--CCeehHH
Q 042265 176 DV---VSCNT--------------------------------------LIDGYVKAGDLAHARQLFDRMPF--RDAVSWG 212 (490)
Q Consensus 176 ~~---~~~~~--------------------------------------l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 212 (490)
++ ..+.. ++..|.+.|++++|.++|+++.. ++..+|+
T Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 309 (597)
T 2xpi_A 230 DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309 (597)
T ss_dssp CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHH
T ss_pred CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHH
Confidence 22 23222 24456688999999999999987 6899999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG 292 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (490)
.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|+.++|..+++.+.+.. +.+..++..++.+|.+.|
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999865 3467789999999999999999999999999765 678899999999999999
Q ss_pred CHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 042265 293 YINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDE 369 (490)
Q Consensus 293 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (490)
++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|++
T Consensus 388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998753 467799999999999999999999999999864 34788999999999999999999999999
Q ss_pred hHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-------CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 370 MESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-------MGGD--VFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
+.+ ..+.+..+|..++..|.+.|++++|.++|+++. ..|+ ..+|..++.+|.+.|++++|++.++++.+
T Consensus 467 ~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 467 SYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 998 455678899999999999999999999999873 2555 78999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 441 LKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
..|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=318.05 Aligned_cols=410 Identities=10% Similarity=-0.008 Sum_probs=349.6
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQ 136 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (490)
+.|.+..+...++.++.+++..|+.++..+.+.|++++|+.+|++|.+. .|+..++..++.+|.+.|++++|..+++.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6788888889999988889999999999999999999999999999863 58889999999999999999999999998
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC-------------------CchhHHHHHHHHHhcCCHHHHH
Q 042265 137 VLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR-------------------DVVSCNTLIDGYVKAGDLAHAR 197 (490)
Q Consensus 137 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~a~ 197 (490)
+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.
T Consensus 143 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 220 (597)
T 2xpi_A 143 EDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAK 220 (597)
T ss_dssp TCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred Hhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHH
Confidence 8653 788999999999999999999999999975443 3779999999999999999999
Q ss_pred HHHhhCCCC---CeehHHHH--------------------------------------HHHHHhcCChhHHHHHHHHHHh
Q 042265 198 QLFDRMPFR---DAVSWGTL--------------------------------------VAGYAQSDQCEEAIQLFCNMMD 236 (490)
Q Consensus 198 ~~~~~~~~~---~~~~~~~l--------------------------------------~~~~~~~g~~~~A~~~~~~m~~ 236 (490)
++|+++... +...+..+ +..|.+.|++++|.++|+++.+
T Consensus 221 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence 999998633 22333322 4456678999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHH
Q 042265 237 LDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWN 313 (490)
Q Consensus 237 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~ 313 (490)
. +++..++..++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|..+++++.+ .+..+|+
T Consensus 301 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 377 (597)
T 2xpi_A 301 L--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL 377 (597)
T ss_dssp G--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred C--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHH
Confidence 5 5899999999999999999999999999999887 66889999999999999999999999998753 4678999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc
Q 042265 314 AMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA 393 (490)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (490)
.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..+.+.|++++|.++|+++.+ ..+.+..++..++.+|.+.
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 454 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQHMQL 454 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHc
Confidence 99999999999999999999998853 33678999999999999999999999999998 5567889999999999999
Q ss_pred CCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCC-CchHHHHHHHHHhcCChHH
Q 042265 394 GLIEEALEMIKKMPM--GGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL------KPED-GGVYKVLADVYANADRWED 464 (490)
Q Consensus 394 g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~p~~-~~~~~~l~~~~~~~g~~~~ 464 (490)
|++++|.++|+++.. ..++.+|..++..|.+.|++++|+++++++.+. .|++ ..++..++.+|.+.|++++
T Consensus 455 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 999999999998752 238999999999999999999999999999996 5553 5689999999999999999
Q ss_pred HHHHHHHHhcCC
Q 042265 465 VVKIRRSLDAGK 476 (490)
Q Consensus 465 A~~~~~~m~~~~ 476 (490)
|.++++++.+.+
T Consensus 535 A~~~~~~~~~~~ 546 (597)
T 2xpi_A 535 AIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC
Confidence 999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-29 Score=237.81 Aligned_cols=373 Identities=14% Similarity=0.050 Sum_probs=315.1
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042265 82 IIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 161 (490)
+...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 3456778899999999998887753 2334456666777788899999999998888875 7788889999999999999
Q ss_pred hHHHHHHHHhccc--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCC--CC-CeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 042265 162 LRDAQELFDEILY--R-DVVSCNTLIDGYVKAGDLAHARQLFDRMP--FR-DAVSWGTLVAGYAQSDQCEEAIQLFCNMM 235 (490)
Q Consensus 162 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 235 (490)
+++|...|+++.. | +..+|..+..++.+.|++++|.+.|+++. .| +...+..+...+...|++++|.+.|+++.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999998843 4 44578889999999999999999998765 23 45678888889999999999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehH
Q 042265 236 DLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTW 312 (490)
Q Consensus 236 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 312 (490)
+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|++..+ .+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 763 3356788899999999999999999999999876 56678888999999999999999999987653 356788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh
Q 042265 313 NAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR 392 (490)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (490)
..+...+...|++++|++.++++.+.. +.+..++..+...+.+.|++++|...++++.+ ..+.+..++..+...+.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHH
Confidence 899999999999999999999998864 22567888999999999999999999999998 456788899999999999
Q ss_pred cCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 393 AGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 393 ~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
.|++++|.+.++++.. .| +..++..++..+.+.|++++|+..++++++..|+++.++..++.++...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999998653 34 788999999999999999999999999999999999999999998877664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-27 Score=227.05 Aligned_cols=353 Identities=16% Similarity=0.064 Sum_probs=311.3
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc--C-CchhHHHHHHHHHhcCCH
Q 042265 117 LLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY--R-DVVSCNTLIDGYVKAGDL 193 (490)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 193 (490)
+...+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++...+ | +..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 3455678899999999999999875 66777888888999999999999999988744 3 567899999999999999
Q ss_pred HHHHHHHhhCC--CC-CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 042265 194 AHARQLFDRMP--FR-DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIE 270 (490)
Q Consensus 194 ~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 270 (490)
++|.+.|+++. .| +..+|..++.++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|+++.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999875 33 56689999999999999999999999998864 2345567788889999999999999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 042265 271 LNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTI 347 (490)
Q Consensus 271 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 347 (490)
+.. +.+..++..+...+.+.|++++|...|+++.+ .+...|..+...+...|++++|+..+++..... +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 875 66788999999999999999999999998764 356688889999999999999999999998763 2257888
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH 425 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 425 (490)
..+...+...|++++|...|+++.+ ..+.+..++..+...+.+.|++++|.+.++++. ..| +..++..++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999998 455567889999999999999999999999865 223 889999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 426 GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|++++|+..++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999864
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=236.16 Aligned_cols=184 Identities=11% Similarity=0.143 Sum_probs=165.1
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHHcCCCCChh
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGE---------LEQGKNIHRYIELNQIRVDSF 279 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 279 (490)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788889999999999999999999999999999999999999987654 678899999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccC----CCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 042265 280 LSTGLVDFYAKCGYINTAIEIFESSQ----EKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS 355 (490)
Q Consensus 280 ~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 355 (490)
+|+++|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999998876 47888999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc
Q 042265 356 HAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA 393 (490)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (490)
+.|++++|.+++++|.+. +..|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999987 9999999999998888653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=234.14 Aligned_cols=188 Identities=12% Similarity=0.123 Sum_probs=165.3
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC---------cHHHHHHHHHHHHhCCCCchh
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCS---------HSLAQTIHSQVLKLGFICDVF 147 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 147 (490)
..++.+|++|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888999999999999999999999999999999999999999987654 578999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHH
Q 042265 148 VLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEA 227 (490)
Q Consensus 148 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 227 (490)
+|+.+|.+|++.|++++|.++|++|.+.. ..||..+|+.+|.+|++.|++++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---------------------------~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFG---------------------------IQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------------------------CCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------CCCccceehHHHHHHHHCCCHHHH
Confidence 99999999999999999998888875332 246777888888888888888899
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 042265 228 IQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC 291 (490)
Q Consensus 228 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 291 (490)
.++|++|.+.|+.||..||+.|+.+|++.|+.++|.+++++|.+.+..|+..||+.++..|...
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999888888753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-25 Score=217.96 Aligned_cols=393 Identities=10% Similarity=-0.037 Sum_probs=313.0
Q ss_pred cccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 042265 76 TFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHV 155 (490)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 155 (490)
...|......+.+.|++++|+..|+++.+.. |+...|..+..++...|++++|...++.+.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456677888899999999999999998864 788889999999999999999999999999876 6677889999999
Q ss_pred HHhcCChHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHH--------------------------------
Q 042265 156 YCVFHRLRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLF-------------------------------- 200 (490)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~-------------------------------- 200 (490)
+.+.|++++|...|+++... +......++..+.+......+.+.+
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999988443 2333333333333222222211111
Q ss_pred ------hhCCC---------C-CeehHHHHHHHHHh---cCChhHHHHHHHHHHh-----CCCCC--------CHHHHHH
Q 042265 201 ------DRMPF---------R-DAVSWGTLVAGYAQ---SDQCEEAIQLFCNMMD-----LDIKP--------DNIALVS 248 (490)
Q Consensus 201 ------~~~~~---------~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~-----~~~~p--------~~~~~~~ 248 (490)
..... + +...+......+.. .|++++|...|+++.+ ....| +...+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11110 1 13344455555554 8999999999999887 31122 3456778
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCCh
Q 042265 249 ALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLG 325 (490)
Q Consensus 249 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 325 (490)
+..++...|++++|...++.+.+.... ..++..+..+|...|++++|...++++.+ .+...+..+...+...|++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888999999999999999999988633 88889999999999999999999988764 3567888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhh
Q 042265 326 RLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKK 405 (490)
Q Consensus 326 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (490)
++|...++++.+... .+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...+++
T Consensus 321 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999988643 35678888899999999999999999999883 455678889999999999999999999987
Q ss_pred CCC----CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 406 MPM----GGD----VFVWSGLLGGCRI---HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 406 ~~~----~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
+.. .++ ...+..++..+.. .|++++|...++++++..|+++.++..++.+|.+.|++++|...+++..+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 642 122 4588899999999 99999999999999999999999999999999999999999999998876
Q ss_pred CC
Q 042265 475 GK 476 (490)
Q Consensus 475 ~~ 476 (490)
..
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred hc
Confidence 53
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=218.81 Aligned_cols=401 Identities=11% Similarity=-0.064 Sum_probs=322.9
Q ss_pred hHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCccc
Q 042265 36 ILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP--YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYS 113 (490)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 113 (490)
..+..+...+. +.|++++|++.|+++. .|+..+|..+..++.+.|++++|+..++++.+.+ +.+...
T Consensus 7 ~~~~~~g~~~~----------~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 75 (514)
T 2gw1_A 7 LALKDKGNQFF----------RNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKV 75 (514)
T ss_dssp HHHHHHHHHHH----------HTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred HHHHHHHHHHH----------HhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHH
Confidence 34556677788 7999999999999875 4789999999999999999999999999999864 345568
Q ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH-----------------------
Q 042265 114 FPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFD----------------------- 170 (490)
Q Consensus 114 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~----------------------- 170 (490)
+..+..++...|++++|...|+.+.+.+ +++......++..+........+.+.+.
T Consensus 76 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (514)
T 2gw1_A 76 LLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK 154 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh
Confidence 9999999999999999999999999876 4555555555554444332222222221
Q ss_pred ---------------hcc---------cC-CchhHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C
Q 042265 171 ---------------EIL---------YR-DVVSCNTLIDGYVK---AGDLAHARQLFDRMPF----------------R 206 (490)
Q Consensus 171 ---------------~~~---------~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~ 206 (490)
... .| +...+......+.. .|++++|...|+++.. +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (514)
T 2gw1_A 155 QENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234 (514)
T ss_dssp --CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred ccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccCh
Confidence 110 01 13344444444444 8999999999987644 2
Q ss_pred -CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 042265 207 -DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLV 285 (490)
Q Consensus 207 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 285 (490)
+..++..+...+...|++++|...++++.+.. |+...+..+..++...|++++|...++.+.+.. +.+..++..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 311 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHH
Confidence 35678889999999999999999999998865 447788999999999999999999999999875 66788899999
Q ss_pred HHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHH
Q 042265 286 DFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDE 362 (490)
Q Consensus 286 ~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 362 (490)
.+|...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998653 356788899999999999999999999998763 2356788889999999999999
Q ss_pred HHHHHHHhHHhhCCCCC----chHHHHHHhhhhh---cCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 042265 363 ARKLFDEMESVYGVSKE----LKHYGCMADLLGR---AGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEA 433 (490)
Q Consensus 363 a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~ 433 (490)
|...++++.+.....++ ...+..+...+.. .|++++|.+.++++. ..| +..++..+...+...|++++|..
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999875222232 3388899999999 999999999998864 223 78899999999999999999999
Q ss_pred HHHHHHhhCCCCCchHHHH
Q 042265 434 AAEHVMKLKPEDGGVYKVL 452 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l 452 (490)
.++++++..|.++..+..+
T Consensus 471 ~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 471 LFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHH
Confidence 9999999999988776655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-24 Score=203.94 Aligned_cols=346 Identities=11% Similarity=0.042 Sum_probs=217.2
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 042265 73 YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSL 152 (490)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 152 (490)
+.+...|..+...+.+.|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++.+.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 3467789999999999999999999999998753 4567788999999999999999999999999986 6678899999
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCc------hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhH
Q 042265 153 MHVYCVFHRLRDAQELFDEILYRDV------VSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEE 226 (490)
Q Consensus 153 i~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 226 (490)
..+|.+.|++++|.+.|+++...++ ..+..++..+... .+..+...+...|++++
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHH
Confidence 9999999999999999999966433 4555554432111 12223334445555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC
Q 042265 227 AIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE 306 (490)
Q Consensus 227 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 306 (490)
|...|+++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..++..++.+|...|++++|...|+++.+
T Consensus 162 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 162 AIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555432 2244445555555555555555555555555443 33444455555555555555555555544432
Q ss_pred --C-CeehHHH------------HHHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHhhccCcHHHHHHH
Q 042265 307 --K-NLFTWNA------------MLVGLAMHGLGRLSLVYFSRMIEARIKPD-----GVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 307 --~-~~~~~~~------------l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
| +...+.. +...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...
T Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 317 (450)
T 2y4t_A 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1 1222222 255666667777777777776653 233 23555666666677777777777
Q ss_pred HHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHH------------HHhcC-----C
Q 042265 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGG------------CRIHG-----N 427 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~------------~~~~~-----~ 427 (490)
++++.+. .+.+...+..+..+|...|++++|...++++. ..| +...+..+..+ |...| +
T Consensus 318 ~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~ 395 (450)
T 2y4t_A 318 CSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAK 395 (450)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCC
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCC
Confidence 7776652 33455666666667777777777777766643 223 45555555422 22233 4
Q ss_pred HHHHHHHHHH-HHhhCCCC
Q 042265 428 VEIAEAAAEH-VMKLKPED 445 (490)
Q Consensus 428 ~~~a~~~~~~-~~~~~p~~ 445 (490)
.+++.+.+++ +++..|++
T Consensus 396 ~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 396 KQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp TTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 5666777775 55566654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-24 Score=211.79 Aligned_cols=392 Identities=9% Similarity=-0.033 Sum_probs=292.7
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
....|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.++.+.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35677888889999999999999999998864 4466788889999999999999999999999886 677888999999
Q ss_pred HHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC-----------------------------
Q 042265 155 VYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPF----------------------------- 205 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------------------------- 205 (490)
++...|++++|...|+.+ ..++......+..+...+....|...++.+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 999999999999999643 32222222233334444444555555544432
Q ss_pred --------CCee---hHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHccCC
Q 042265 206 --------RDAV---SWGTLVAGYAQ--------SDQCEEAIQLFCNMMDLDIKPD--------NIALVSALSACARLGE 258 (490)
Q Consensus 206 --------~~~~---~~~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~p~--------~~~~~~l~~~~~~~~~ 258 (490)
.+.. ....+...+.. .|++++|..+++++.+.. |+ ..++..+...+...|+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhccc
Confidence 1111 22222222221 247888888888888753 33 2246666677888899
Q ss_pred hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHH
Q 042265 259 LEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRM 335 (490)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 335 (490)
+++|...++.+.+.. |+...+..+...+...|++++|...|+++.+ .+..++..+...+...|++++|...++++
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999988874 4477888888889999999999999887653 35678888888999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC----CC-
Q 042265 336 IEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM----GG- 410 (490)
Q Consensus 336 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~- 410 (490)
.+... .+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++.. .+
T Consensus 337 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 413 (537)
T 3fp2_A 337 QSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK 413 (537)
T ss_dssp HHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence 87642 24577888888888999999999999998883 455677888889999999999999998887531 11
Q ss_pred ---CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 411 ---DVFVWSGLLGGCRIH----------GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 411 ---~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
....+......+... |++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 333455556667777 999999999999999999988899999999999999999999998887643
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-23 Score=198.73 Aligned_cols=320 Identities=13% Similarity=0.054 Sum_probs=236.4
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhccc---CCchhHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeehHHHHHHHH
Q 042265 145 DVFVLNSLMHVYCVFHRLRDAQELFDEILY---RDVVSCNTLIDGYVKAGDLAHARQLFDRMP---FRDAVSWGTLVAGY 218 (490)
Q Consensus 145 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 218 (490)
+...+..+...+.+.|++++|..+|+++.. .+..+|..+..++...|++++|...|+++. ..+..++..++.+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344444444444444444444444444422 133344444444455555555555544432 22455666777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCH----HHHHHH------------HHHHHccCChHHHHHHHHHHHHcCCCCChhhHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDIKPDN----IALVSA------------LSACARLGELEQGKNIHRYIELNQIRVDSFLST 282 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (490)
.+.|++++|.+.|+++.+.. |+. ..+..+ ...+...|++++|...++.+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 77777777777777776643 332 333333 455888999999999999999876 67888999
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHH--------
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD-GVTILGA-------- 350 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l-------- 350 (490)
.++.+|.+.|++++|...|+++.+ .+..+|..++..+...|++++|+..|+++... .|+ ...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998764 46789999999999999999999999999875 343 3344433
Q ss_pred ----HHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHH
Q 042265 351 ----LVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLG 420 (490)
Q Consensus 351 ----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 420 (490)
...+...|++++|...|+++.+. .+.+ ...+..++.++.+.|++++|...++++. ..| +..+|..++.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 77889999999999999999884 2223 3478889999999999999999999864 234 8899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH------------HHhcC-----ChHHHHHHHHH
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV------------YANAD-----RWEDVVKIRRS 471 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 471 (490)
+|...|++++|+..++++++..|+++.++..++.+ |...| +.+++.+.+++
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999899888844 44455 56677777776
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-22 Score=198.56 Aligned_cols=397 Identities=13% Similarity=-0.002 Sum_probs=305.1
Q ss_pred chhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCC
Q 042265 34 CHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPD 110 (490)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 110 (490)
....+..+...+. +.|++++|++.|+++. +.+..+|..+...+.+.|++++|++.|+++.+.+ +.+
T Consensus 24 ~a~~~~~~g~~~~----------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 92 (537)
T 3fp2_A 24 YAVQLKNRGNHFF----------TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDH 92 (537)
T ss_dssp HHHHHHHHHHHHH----------HTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHH----------HhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cch
Confidence 3456777888888 8999999999999864 5678899999999999999999999999998864 445
Q ss_pred cccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC---------------
Q 042265 111 FYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR--------------- 175 (490)
Q Consensus 111 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------------- 175 (490)
...+..+..++...|++++|...|+. ... .|+.. ...+..+...+....|...++++...
T Consensus 93 ~~~~~~la~~~~~~g~~~~A~~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 167 (537)
T 3fp2_A 93 SKALLRRASANESLGNFTDAMFDLSV-LSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL 167 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH-Hhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH
Confidence 67888899999999999999999963 332 22211 12233444445556667666666332
Q ss_pred ----------------------Cch---hHHHHHHHHH--------hcCCHHHHHHHHhhCCCCCe----------ehHH
Q 042265 176 ----------------------DVV---SCNTLIDGYV--------KAGDLAHARQLFDRMPFRDA----------VSWG 212 (490)
Q Consensus 176 ----------------------~~~---~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~----------~~~~ 212 (490)
+.. ....+...+. ..|++++|..+|+++...++ .++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 247 (537)
T 3fp2_A 168 ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALC 247 (537)
T ss_dssp HHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHH
Confidence 111 1222222211 22578999999988765422 2577
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG 292 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (490)
.+...+...|++++|...++++.+. .|+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|
T Consensus 248 ~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 248 YTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 7788899999999999999999985 4667888999999999999999999999999886 667889999999999999
Q ss_pred CHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHH
Q 042265 293 YINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDE 369 (490)
Q Consensus 293 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (490)
++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999998763 356789999999999999999999999998864 33567888899999999999999999999
Q ss_pred hHHhhCCCCC----chHHHHHHhhhhhc----------CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 042265 370 MESVYGVSKE----LKHYGCMADLLGRA----------GLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEA 433 (490)
Q Consensus 370 ~~~~~~~~~~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~ 433 (490)
+.+.....++ ...+..+...+... |++++|...+++.. ..| +...+..+...+...|++++|..
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 8774211121 12234455677777 99999999999865 233 78899999999999999999999
Q ss_pred HHHHHHhhCCCCCchHH
Q 042265 434 AAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~~~ 450 (490)
.++++++..|.+.....
T Consensus 484 ~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 484 LFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999998875544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-20 Score=171.89 Aligned_cols=205 Identities=11% Similarity=-0.004 Sum_probs=135.0
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChH
Q 042265 250 LSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGR 326 (490)
Q Consensus 250 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 326 (490)
...+...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.+ .+...+..+...+...|+++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 345555666666666666665554 44555566666666666666666666655443 24455666666666667777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH------------HHHHHhhccCcHHHHHHHHHHhHHhhCCCCCc----hHHHHHHhhh
Q 042265 327 LSLVYFSRMIEARIKPDGVTIL------------GALVGCSHAGLVDEARKLFDEMESVYGVSKEL----KHYGCMADLL 390 (490)
Q Consensus 327 ~A~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~ 390 (490)
+|...+++..+.... +...+. .+...+...|++++|...++++.+. .+.+. ..+..+...+
T Consensus 206 ~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 206 LSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHH
Confidence 777777666654211 222221 2355577788888888888888874 22232 2344567778
Q ss_pred hhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 391 GRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
...|++++|...+++... .| +..++..++..+...|++++|...++++++.+|+++.++..+..+...
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 888888888888877542 33 778888888888888888888888888888888888777777766544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-19 Score=169.61 Aligned_cols=298 Identities=10% Similarity=0.019 Sum_probs=211.9
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChh
Q 042265 146 VFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCE 225 (490)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 225 (490)
+..+..+...+...|++++|...|+++.+.+ +.+..++..+...+...|+++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~----------------------------p~~~~~~~~~a~~~~~~~~~~ 54 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD----------------------------PDNYIAYYRRATVFLAMGKSK 54 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------------------cccHHHHHHHHHHHHHccCHH
Confidence 3455556666666666666666666653211 112334444444455555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CChhhHH------------HHHHHHHh
Q 042265 226 EAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIR---VDSFLST------------GLVDFYAK 290 (490)
Q Consensus 226 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~------------~l~~~~~~ 290 (490)
+|...++++.+.. +.+...+..+..++...|++++|...++.+.+.. + .+...+. .+...+..
T Consensus 55 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 55 AALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544432 1233444445555555555555555555554432 2 2222332 23678899
Q ss_pred cCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 291 CGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
.|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998763 466788899999999999999999999998864 346788899999999999999999999
Q ss_pred HHhHHhhCCCCCchHHH------------HHHhhhhhcCCHHHHHHHHhhCC-CCC-CH----HHHHHHHHHHHhcCCHH
Q 042265 368 DEMESVYGVSKELKHYG------------CMADLLGRAGLIEEALEMIKKMP-MGG-DV----FVWSGLLGGCRIHGNVE 429 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~----~~~~~l~~~~~~~~~~~ 429 (490)
+++.+. .+.+...+. .+...+.+.|++++|...++++. ..| +. ..+..+...+...|+++
T Consensus 212 ~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 212 RECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHH
Confidence 999884 333443333 23667889999999999998854 233 33 34556788899999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 430 IAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 430 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+|+..++++++..|+++.++..++.+|...|++++|.+.+++..+..
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998764
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-19 Score=171.43 Aligned_cols=367 Identities=11% Similarity=-0.048 Sum_probs=306.5
Q ss_pred CCCcccHHHHHHHHHc----CCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhc----cCCcHHHHHHHHHHHHhCCCC
Q 042265 73 YPSTFSYNTIIRAHTL----FSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQ----LCSHSLAQTIHSQVLKLGFIC 144 (490)
Q Consensus 73 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~ 144 (490)
..+..++..+...+.. .+++++|+..|++..+.| +...+..|...+.. .+++++|.+.|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 4577888888888888 899999999999998864 56677888888887 899999999999998865
Q ss_pred chhHHHHHHHHHHh----cCChHHHHHHHHhcccC-CchhHHHHHHHHHh----cCCHHHHHHHHhhCCCC-CeehHHHH
Q 042265 145 DVFVLNSLMHVYCV----FHRLRDAQELFDEILYR-DVVSCNTLIDGYVK----AGDLAHARQLFDRMPFR-DAVSWGTL 214 (490)
Q Consensus 145 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l 214 (490)
+...+..|...|.. .+++++|.+.|++..+. +...+..+...|.. .+++++|.+.|++..+. +..++..+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L 189 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL 189 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56777788888888 88999999999998665 66788888888887 88999999999886543 77888899
Q ss_pred HHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 215 VAGYAQ----SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACAR----LGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 215 ~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
...|.. .+++++|.+.|++..+.| +...+..+...+.. .++.++|..++++..+.+ +...+..+..
T Consensus 190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 263 (490)
T 2xm6_A 190 GYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGY 263 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 999988 899999999999998865 55677777777775 789999999999998765 4556777888
Q ss_pred HHHh----cCCHHHHHHHHhccCCC-CeehHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 042265 287 FYAK----CGYINTAIEIFESSQEK-NLFTWNAMLVGLAMH-----GLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH 356 (490)
Q Consensus 287 ~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 356 (490)
.|.. .+++++|...|++..+. ++..+..+...|... +++++|+..|++..+.| +...+..+...+..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFR 340 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Confidence 8888 89999999999987654 667788888888887 89999999999998875 44566667777766
Q ss_pred cC---cHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----c
Q 042265 357 AG---LVDEARKLFDEMESVYGVSKELKHYGCMADLLGR----AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI----H 425 (490)
Q Consensus 357 ~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~ 425 (490)
.| ++++|.++|++..+. .++..+..+...|.. .+++++|.++|++....+++..+..+...|.. .
T Consensus 341 ~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~ 416 (490)
T 2xm6_A 341 LGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVE 416 (490)
T ss_dssp SCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred CCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCC
Confidence 56 899999999999884 456778888888888 89999999999998777789999999999988 8
Q ss_pred CCHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHh
Q 042265 426 GNVEIAEAAAEHVMKLKPE---DGGVYKVLADVYAN 458 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 458 (490)
+++++|...|+++.+..|+ ++.+...++..+..
T Consensus 417 ~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999999998844 66666666665543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-19 Score=165.86 Aligned_cols=244 Identities=12% Similarity=0.059 Sum_probs=144.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042265 216 AGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLG-ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYI 294 (490)
Q Consensus 216 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (490)
.++...|++++|...++++.+.. +.+...+..+...+...| ++++|...++++.+.. +.+...+..+..++...|++
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 141 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEH 141 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCH
Confidence 33333344444444444433321 112333333444444444 4444444444444332 22333444444444444444
Q ss_pred HHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 042265 295 NTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEME 371 (490)
Q Consensus 295 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (490)
++|...|+++.+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.
T Consensus 142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 444444444331 123445555566666666666666666666543 2245666667777777777777777777776
Q ss_pred HhhC-------CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 372 SVYG-------VSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 372 ~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
+... .+.....+..+...|...|++++|...+++... .| +...+..+...+...|++++|...++++++..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 5311 133456777788888888888888888877542 22 67788888888999999999999999999999
Q ss_pred CCCCchHHHHHHHH-HhcCCh
Q 042265 443 PEDGGVYKVLADVY-ANADRW 462 (490)
Q Consensus 443 p~~~~~~~~l~~~~-~~~g~~ 462 (490)
|+++.++..++.++ ...|+.
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC-
T ss_pred CCchHHHHHHHHHHHHHhCch
Confidence 99888888888888 455554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.2e-18 Score=166.79 Aligned_cols=362 Identities=11% Similarity=-0.011 Sum_probs=304.3
Q ss_pred hHHHHHHHhhhCCCCCCcccHHHHHHHHhc----cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHH
Q 042265 94 NAVVLFSQMRTVSIPPDFYSFPFLLRACSQ----LCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCV----FHRLRDA 165 (490)
Q Consensus 94 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A 165 (490)
.++..++...+.| +...+..+...+.. .+++++|...|+...+.| +...+..|...|.. .++.++|
T Consensus 25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A 98 (490)
T 2xm6_A 25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQA 98 (490)
T ss_dssp CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 3455566655543 66677777777776 799999999999998865 56778888899998 8999999
Q ss_pred HHHHHhcccC-CchhHHHHHHHHHh----cCCHHHHHHHHhhCCCC-CeehHHHHHHHHHh----cCChhHHHHHHHHHH
Q 042265 166 QELFDEILYR-DVVSCNTLIDGYVK----AGDLAHARQLFDRMPFR-DAVSWGTLVAGYAQ----SDQCEEAIQLFCNMM 235 (490)
Q Consensus 166 ~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 235 (490)
.+.|++..+. +...+..+...|.. .+++++|.+.|++.... +...+..+...|.. .+++++|.+.|++..
T Consensus 99 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~ 178 (490)
T 2xm6_A 99 VIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA 178 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 9999998665 66788888888888 88999999999986644 67788889999988 889999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHhccCCC
Q 042265 236 DLDIKPDNIALVSALSACAR----LGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK----CGYINTAIEIFESSQEK 307 (490)
Q Consensus 236 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~ 307 (490)
+.| +...+..+...+.. .++.++|..++++..+.+ +...+..+...|.. .+++++|..+|++..+.
T Consensus 179 ~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 179 EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 875 66778888888887 899999999999999875 45677788888886 88999999999987654
Q ss_pred -CeehHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-----CcHHHHHHHHHHhHHhhCCC
Q 042265 308 -NLFTWNAMLVGLAM----HGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA-----GLVDEARKLFDEMESVYGVS 377 (490)
Q Consensus 308 -~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~ 377 (490)
++..+..+...|.. .+++++|+..|++..+.| +...+..+...+... +++++|...|++..+. +
T Consensus 253 ~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~-- 326 (490)
T 2xm6_A 253 GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G-- 326 (490)
T ss_dssp TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T--
T ss_pred CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C--
Confidence 66677788888887 899999999999998764 456666777777776 8999999999999884 3
Q ss_pred CCchHHHHHHhhhhhcC---CHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 378 KELKHYGCMADLLGRAG---LIEEALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
+...+..+...|...| ++++|.++|++....+++..+..+...|.. .+++++|...++++.+.. ++.++.
T Consensus 327 -~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~ 403 (490)
T 2xm6_A 327 -DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQV 403 (490)
T ss_dssp -CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred -CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHH
Confidence 4566777888887766 789999999998777899999999999998 899999999999999854 466899
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHhcCC
Q 042265 451 VLADVYAN----ADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 451 ~l~~~~~~----~g~~~~A~~~~~~m~~~~ 476 (490)
.|+.+|.+ .+++++|...|++..+.+
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99999998 899999999999988776
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.2e-20 Score=172.60 Aligned_cols=260 Identities=13% Similarity=-0.018 Sum_probs=193.1
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3445566666666666666666666666543 2344556666666666666666666666666554 4455566666666
Q ss_pred HHhcCCHHHHHHHHhccCCC---CeehHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQEK---NLFTWNA---------------MLVGLAMHGLGRLSLVYFSRMIEARIKP-DGVTIL 348 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~---------------l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~ 348 (490)
|...|++++|.+.++++.+. +...+.. .+..+...|++++|...++++.+..... +..++.
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 66666666666666654421 1111110 1333348899999999999998864221 478889
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcC
Q 042265 349 GALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHG 426 (490)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~ 426 (490)
.+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++. ..| +...+..++..+...|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999883 45567889999999999999999999998864 233 7889999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 427 NVEIAEAAAEHVMKLKPED-----------GGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 427 ~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
++++|...++++++..|++ ..++..++.+|...|++++|..++++
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 9999999999999988877 67899999999999999999998764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-19 Score=164.17 Aligned_cols=265 Identities=10% Similarity=-0.009 Sum_probs=232.3
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 042265 206 RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLV 285 (490)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 285 (490)
.+...+..++..+...|++++|.++++++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 367788889999999999999999999998764 3345566778888899999999999999999876 66788899999
Q ss_pred HHHHhcC-CHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH
Q 042265 286 DFYAKCG-YINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVD 361 (490)
Q Consensus 286 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 361 (490)
..+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.... +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 35678999999999999999999999999886432 4566777889999999999
Q ss_pred HHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-----------CCCHHHHHHHHHHHHhcCCHHH
Q 042265 362 EARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-----------GGDVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ 430 (490)
+|...++++.+ ..+.+...+..+...+...|++++|...+++... .....++..++..+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998 5566778899999999999999999999987532 2256789999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 431 AEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 431 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|+..++++++..|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999987654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.2e-18 Score=166.51 Aligned_cols=394 Identities=10% Similarity=0.009 Sum_probs=280.7
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 042265 73 YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSL 152 (490)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 152 (490)
+.+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|+++.|..+|+++++.. |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 346778888887 477888888888888888752 3455578888888888888888888888888753 577777766
Q ss_pred HHHH-HhcCChHHHHH----HHHhccc------CCchhHHHHHHHHHh---------cCCHHHHHHHHhhCCC-CCe---
Q 042265 153 MHVY-CVFHRLRDAQE----LFDEILY------RDVVSCNTLIDGYVK---------AGDLAHARQLFDRMPF-RDA--- 208 (490)
Q Consensus 153 i~~~-~~~g~~~~A~~----~~~~~~~------~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~--- 208 (490)
+... ...|+.+.|.+ +|++... .+...|...+....+ .|+++.|..+|++... |+.
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6533 34566666554 5555421 244567777666554 6788888888887553 211
Q ss_pred ehHHHHHHHH-------------HhcCChhHHHHHHHHH------HhCC---CCCCH--------HHHHHHHHHHHc---
Q 042265 209 VSWGTLVAGY-------------AQSDQCEEAIQLFCNM------MDLD---IKPDN--------IALVSALSACAR--- 255 (490)
Q Consensus 209 ~~~~~l~~~~-------------~~~g~~~~A~~~~~~m------~~~~---~~p~~--------~~~~~l~~~~~~--- 255 (490)
..|....... .+.+++..|..++.+. .+.. ++|+. ..|...+.....
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 1222221110 1235677777777653 2221 34442 344444433222
Q ss_pred -cCCh----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHhccCC---C-CeehH
Q 042265 256 -LGEL----EQGKNIHRYIELNQIRVDSFLSTGLVDFYAK-------CGYIN-------TAIEIFESSQE---K-NLFTW 312 (490)
Q Consensus 256 -~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~~~~ 312 (490)
.++. ..+..+|+++.... +.+...|..++..+.+ .|+++ +|..+|++..+ | +...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 1233 36778899988874 6678888888888876 68887 89999998774 3 46688
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh-
Q 042265 313 NAMLVGLAMHGLGRLSLVYFSRMIEARIKPD--GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL- 389 (490)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 389 (490)
..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++..+. .+.+...+...+..
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHH
Confidence 89999999999999999999999985 454 247888888888999999999999999873 33334444333322
Q ss_pred hhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc----hHHHHHHHHHhcCChH
Q 042265 390 LGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG----VYKVLADVYANADRWE 463 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~ 463 (490)
+...|+.++|..+|++.. ..| ++..|..++..+.+.|+.++|..+|+++++..|.++. .|...+......|+.+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 346899999999999754 334 7899999999999999999999999999998776654 7778888888999999
Q ss_pred HHHHHHHHHhcC
Q 042265 464 DVVKIRRSLDAG 475 (490)
Q Consensus 464 ~A~~~~~~m~~~ 475 (490)
.+..+.+++.+.
T Consensus 481 ~~~~~~~r~~~~ 492 (530)
T 2ooe_A 481 SILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-17 Score=166.74 Aligned_cols=393 Identities=10% Similarity=0.037 Sum_probs=282.0
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC-CC-----CcccHHHHHHHHHcCCC
Q 042265 18 QIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP-YP-----STFSYNTIIRAHTLFSS 91 (490)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~g~ 91 (490)
++.++..... ++-+-+|.--...++.|. ..|.+.+|+++++++. .| +...-+.++....+. +
T Consensus 969 ~Lidqv~a~a-L~e~~~PeeVs~~vKaf~----------~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D 1036 (1630)
T 1xi4_A 969 PLIDQVVQTA-LSETQDPEEVSVTVKAFM----------TADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-D 1036 (1630)
T ss_pred HHHHHHHHhh-cccccCHHHhHHHHHHHH----------hCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-C
Confidence 3444443333 332345555566677788 7788888888888764 22 234555666666666 5
Q ss_pred chhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHh
Q 042265 92 PLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDE 171 (490)
Q Consensus 92 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 171 (490)
..+..+..++.... ....+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++
T Consensus 1037 ~~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aer 1101 (1630)
T 1xi4_A 1037 RTRVMEYINRLDNY-------DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAER 1101 (1630)
T ss_pred hhhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHh
Confidence 56666665554421 13446677778888888888888742 11222222322 67888888888887
Q ss_pred cccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042265 172 ILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALS 251 (490)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 251 (490)
. .++.+|..+..++.+.|++++|++.|.+. .|...|..++.++.+.|++++|.++|...++.. ++....+.++.
T Consensus 1102 v--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1102 C--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 1175 (1630)
T ss_pred c--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHH
Confidence 6 34668889999999999999999999775 577788889999999999999999998877754 33333345888
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHH
Q 042265 252 ACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVY 331 (490)
Q Consensus 252 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 331 (490)
+|++.++++....+. + .++...+..+...|...|++++|..+|..+ ..|..+...+.+.|++++|.+.
T Consensus 1176 aYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred HHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHH
Confidence 888888887644442 1 345566667888999999999999999885 4788999999999999999998
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C
Q 042265 332 FSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G 410 (490)
Q Consensus 332 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 410 (490)
+++. .+..+|..+-.+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..... +
T Consensus 1244 arKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1244 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred HHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 8876 35688888888898899988888766543 235566778899999999999999999875432 2
Q ss_pred -CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhCC-----CCCchHHHHHHHHHhcCChHHHHH
Q 042265 411 -DVFVWSGLLGGCRIH--GNVEIAEAAAEHVMKLKP-----EDGGVYKVLADVYANADRWEDVVK 467 (490)
Q Consensus 411 -~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 467 (490)
....|..+...+.+. ++..++.+.|..-..+.| .+...|..+...|.+.|+++.|..
T Consensus 1312 aH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1312 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 556676676666654 456666666666555555 566688899999999999999884
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=168.44 Aligned_cols=261 Identities=13% Similarity=-0.053 Sum_probs=206.2
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45567777888888888888888888887754 3456677888888888888888888888887765 556777888888
Q ss_pred HHHhcCCHHHHHHHHhccCCCC-------------eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 042265 287 FYAKCGYINTAIEIFESSQEKN-------------LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIK-PDGVTILGALV 352 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~ 352 (490)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 8888888888888887765311 223345577888999999999999999886432 25788999999
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 430 (490)
.+...|++++|...++++.+ ..+.+..++..+..+|...|++++|...++++. ..| +..++..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998 455678899999999999999999999998864 234 78999999999999999999
Q ss_pred HHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCChHHHHHHHHH
Q 042265 431 AEAAAEHVMKLKPE------------DGGVYKVLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 431 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 471 (490)
|...++++++..|+ +..++..++.++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999997776 356899999999999999999888764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-18 Score=160.14 Aligned_cols=236 Identities=13% Similarity=0.142 Sum_probs=90.2
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQ 136 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (490)
+.|++++|.++++++++| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999766 49999999999999999999999652 6788999999999999999999998887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHH
Q 042265 137 VLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVA 216 (490)
Q Consensus 137 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 216 (490)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|.+++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 7764 45678899999999999999998888753 67778999999999999999999999887 47888999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 042265 217 GYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINT 296 (490)
Q Consensus 217 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 296 (490)
++.+.|++++|.+.+.++ .+..+|..++.+|...|+++.|...... +..++.-...++..|.+.|.+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHH
Confidence 999999999999988887 2678888888888888888888544332 22333334456667777777777
Q ss_pred HHHHHhccCCC---CeehHHHHHHHHHH
Q 042265 297 AIEIFESSQEK---NLFTWNAMLVGLAM 321 (490)
Q Consensus 297 A~~~~~~~~~~---~~~~~~~l~~~~~~ 321 (490)
|..+++....- ....|+-+.-+|++
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 77777665542 23345555444443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-17 Score=162.91 Aligned_cols=404 Identities=9% Similarity=0.004 Sum_probs=295.5
Q ss_pred HHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHH
Q 042265 20 HAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAV 96 (490)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 96 (490)
++..++.. |.+...|..++.. . +.|++++|..+|+++. +.+...|..++..+.+.|++++|.
T Consensus 2 le~al~~~----P~~~~~w~~l~~~-~----------~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~ 66 (530)
T 2ooe_A 2 AEKKLEEN----PYDLDAWSILIRE-A----------QNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVE 66 (530)
T ss_dssp HHHHHHHC----TTCHHHHHHHHHH-H----------HSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHhhhC----CCCHHHHHHHHHH-H----------HhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 34445554 2678899999985 6 6899999999999864 456778999999999999999999
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHH-hccCCcHHHHH----HHHHHHHh-CCC-CchhHHHHHHHHHHh---------cC
Q 042265 97 VLFSQMRTVSIPPDFYSFPFLLRAC-SQLCSHSLAQT----IHSQVLKL-GFI-CDVFVLNSLMHVYCV---------FH 160 (490)
Q Consensus 97 ~~~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~-~~~~~~~~li~~~~~---------~g 160 (490)
.+|+++.+.. |+...|...+... ...|+.+.|.+ +|+..+.. |.. ++...|...+....+ .|
T Consensus 67 ~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 144 (530)
T 2ooe_A 67 KLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQ 144 (530)
T ss_dssp HHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHH
T ss_pred HHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHh
Confidence 9999999863 6777777766533 34577776665 77776653 543 356778888877665 68
Q ss_pred ChHHHHHHHHhcccC-Cc---hhHHHHHHHH-------------HhcCCHHHHHHHHhh-------CC------CCC---
Q 042265 161 RLRDAQELFDEILYR-DV---VSCNTLIDGY-------------VKAGDLAHARQLFDR-------MP------FRD--- 207 (490)
Q Consensus 161 ~~~~A~~~~~~~~~~-~~---~~~~~l~~~~-------------~~~~~~~~a~~~~~~-------~~------~~~--- 207 (490)
++++|..+|++.++. +. ..|....... .+.++++.|..++.. +. .|+
T Consensus 145 ~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 145 RITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 899999999998652 21 2333222211 124556777765553 11 111
Q ss_pred -----eehHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------cCChH-------
Q 042265 208 -----AVSWGTLVAGYAQS----DQC----EEAIQLFCNMMDLDIKPDNIALVSALSACAR-------LGELE------- 260 (490)
Q Consensus 208 -----~~~~~~l~~~~~~~----g~~----~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-------~~~~~------- 260 (490)
...|...+...... ++. +++..+|++.+... +-+...|...+..+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 13455544333322 232 37788999988753 3466777777777765 79987
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--C-Ce-ehHHHHHHHHHHcCChHHHHHHHHHHH
Q 042265 261 QGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--K-NL-FTWNAMLVGLAMHGLGRLSLVYFSRMI 336 (490)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~ 336 (490)
+|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|.++|++..
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8999999998733356788999999999999999999999998764 3 32 478888888889999999999999998
Q ss_pred HCCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C----
Q 042265 337 EARIKPDGVTILGALVG-CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G---- 410 (490)
Q Consensus 337 ~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---- 410 (490)
+... .+...+...... +...|++++|..+|++..+. .+.++..+..++..+.+.|+.++|..+|++.... |
T Consensus 384 ~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 384 EDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp TCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred hccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 7532 223333322222 33589999999999999884 3456788999999999999999999999986432 2
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 411 -DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 411 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
....|...+......|+.+.+..+.+++.+..|+
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 3458888888889999999999999999998874
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-18 Score=155.55 Aligned_cols=379 Identities=10% Similarity=0.027 Sum_probs=182.4
Q ss_pred HHHHHHhhchhHHHHHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHH
Q 042265 4 NNFIKRCKTIKQIHQIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTII 83 (490)
Q Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li 83 (490)
..+|..|++++.+....+.+ +++.+|+.|...+. +.|++++|++.|.+. +|...|..++
T Consensus 10 ~~ll~~~~~ld~A~~fae~~---------~~~~vWs~La~A~l----------~~g~~~eAIdsfika--~D~~~y~~V~ 68 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERC---------NEPAVWSQLAKAQL----------QKGMVKEAIDSYIKA--DDPSSYMEVV 68 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhC---------CChHHHHHHHHHHH----------HcCCHHHHHHHHHcC--CCHHHHHHHH
Confidence 35677777777776666644 34459999999999 999999999999764 5677999999
Q ss_pred HHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 042265 84 RAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLR 163 (490)
Q Consensus 84 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 163 (490)
+.+...|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.++
T Consensus 69 ~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~ye 139 (449)
T 1b89_A 69 QAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYD 139 (449)
T ss_dssp ------------------------------------------CHHHHTTTTT-------CC----------------CTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHH
Confidence 9999999999999988777764 4667889999999999999999998874 477789999999999999999
Q ss_pred HHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 042265 164 DAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDN 243 (490)
Q Consensus 164 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 243 (490)
+|...|..+ ..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+ ...+
T Consensus 140 eA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~a 207 (449)
T 1b89_A 140 AAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHA 207 (449)
T ss_dssp THHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCH
T ss_pred HHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCH
Confidence 999999987 589999999999999999999999994 7899999999999999999996655542 2333
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CCHHHHHHHHhccCC--------CCeehHH
Q 042265 244 IALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC--GYINTAIEIFESSQE--------KNLFTWN 313 (490)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~--------~~~~~~~ 313 (490)
.....++..|.+.|.+++|..+++...... +-....|+.|..+|++- +++.+.++.|..-.. .+...|.
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 445578899999999999999999998776 66778888888888764 455555566554332 2567899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh
Q 042265 314 AMLVGLAMHGLGRLSLVYFSRMIEA-RIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR 392 (490)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (490)
.+...|.+.++++.|..+ |.++ ...-+...|..++.--....-+-+|..+|- .. .+...+.|+.++..
T Consensus 287 e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~-----~p~~l~~ll~~l~~ 355 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF-----KPLLLNDLLMVLSP 355 (449)
T ss_dssp HHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH-----CGGGHHHHHHHHGG
T ss_pred HHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc-----CHHHHHHHHHHHHh
Confidence 999999999999998874 4443 111223333333332222222223333332 21 22234455555555
Q ss_pred cCCHHHHHHHHhhC-------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042265 393 AGLIEEALEMIKKM-------------PMGGDVFVWSGLLGGCRIHGNVEIAEAAAE 436 (490)
Q Consensus 393 ~g~~~~A~~~~~~~-------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 436 (490)
.=+...+..+|++. ....+..+-.++-..|....+++.-....+
T Consensus 356 ~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~si~ 412 (449)
T 1b89_A 356 RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 412 (449)
T ss_dssp GCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 55555555555443 333355555566666777777776555444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-17 Score=149.41 Aligned_cols=271 Identities=10% Similarity=-0.026 Sum_probs=209.2
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC----eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChH
Q 042265 185 DGYVKAGDLAHARQLFDRMPFRD----AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELE 260 (490)
Q Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 260 (490)
+-....|++..|+..++.....+ ......+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 33455677777777777655433 23445667888888888888876644 1 3566677888888888888999
Q ss_pred HHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 042265 261 QGKNIHRYIELNQI-RVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR 339 (490)
Q Consensus 261 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 339 (490)
+|.+.++++...+. |.+...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+..
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 99999998887764 44566777788899999999999999998 4577788899999999999999999999998863
Q ss_pred CCCCHHHH---HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHH
Q 042265 340 IKPDGVTI---LGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFV 414 (490)
Q Consensus 340 ~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~ 414 (490)
|+.... ...+..+...|++++|..+|+++.+ ..+.+...++.+..++.+.|++++|.+.|+++. ..| ++.+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 554321 1223334456999999999999998 466788899999999999999999999999854 344 8899
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHH
Q 042265 415 WSGLLGGCRIHGNVEI-AEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 415 ~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
+..++..+...|+.++ +.++++++++..|+++.+.. ...+.+.++++..-|
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 9999999999999876 67899999999999984433 445555566655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-16 Score=157.60 Aligned_cols=353 Identities=12% Similarity=0.089 Sum_probs=279.9
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCC--CCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSI--PPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSL 152 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 152 (490)
++.--...+++|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..++.+...... ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHH
Confidence 333445678899999999999999999984321 01223445566666665 6666666666654221 3447
Q ss_pred HHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHH
Q 042265 153 MHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFC 232 (490)
Q Consensus 153 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 232 (490)
...+...|.+++|..+|++... .....+.++ ...+++++|.++.++.. +..+|..+..++...|++++|++.|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7888999999999999999742 222223332 27889999999999874 47889999999999999999999996
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehH
Q 042265 233 NMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTW 312 (490)
Q Consensus 233 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 312 (490)
+. -|...|..++.++.+.|++++|.+++....+.. +++...+.++.+|++.+++++...+. ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 64 467788899999999999999999999888765 44444456999999999999755554 35566778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh
Q 042265 313 NAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR 392 (490)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (490)
..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|..+..+|..
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhh
Confidence 88999999999999999999985 479999999999999999999998773 45889999999999
Q ss_pred cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc--CChHHHHHHHH
Q 042265 393 AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA--DRWEDVVKIRR 470 (490)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 470 (490)
.|++..|......+.. ++..+..++..|.+.|.+++|+.+++..+.++|.+...|..++.+|.+- ++..++.++|.
T Consensus 1263 ~~Ef~LA~~cgl~Iiv--~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHIVV--HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hhHHHHHHHHHHhhhc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998876443 5667778999999999999999999999999999999998888888764 45666666665
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-18 Score=159.93 Aligned_cols=261 Identities=10% Similarity=-0.076 Sum_probs=195.7
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445566666666667777777666666543 2345566666666666677777777776666654 4455666666666
Q ss_pred HHhcCCHHHHHHHHhccCCC---CeehHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQEK---NLFTWNAM--------------LV-GLAMHGLGRLSLVYFSRMIEARIKPDGVTILG 349 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ 349 (490)
|...|++++|.+.++++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 77777777777666654421 12222222 22 3667789999999999998864 336788888
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC
Q 042265 350 ALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGN 427 (490)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 427 (490)
+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++. ..| +...+..+...+...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999883 45567888999999999999999999998854 233 78899999999999999
Q ss_pred HHHHHHHHHHHHhhCCC------------CCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 428 VEIAEAAAEHVMKLKPE------------DGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 428 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+++|...++++++..|. ++.++..++.++.+.|++++|..++++..
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999888 67789999999999999999999987543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.5e-18 Score=160.13 Aligned_cols=307 Identities=12% Similarity=0.019 Sum_probs=150.8
Q ss_pred CChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHH-HHHHhhhCCC-CC--CcccHHHHHHHHhccCCcHHHHHHH
Q 042265 59 DPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVV-LFSQMRTVSI-PP--DFYSFPFLLRACSQLCSHSLAQTIH 134 (490)
Q Consensus 59 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~ 134 (490)
+.++.+...|+.+...+.. .+.-.|++++|++ .|++..+... .| +...+..+...+...|++++|...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4445555555554433222 2233467778877 7776554321 11 3456777777888888888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHH
Q 042265 135 SQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTL 214 (490)
Q Consensus 135 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 214 (490)
+.+.+.. +.+..++..+..++.+.|++++|...|+++.+.+ ..+..++..+
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~l 138 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK----------------------------PDNQTALMAL 138 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTCHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC----------------------------CCCHHHHHHH
Confidence 8888765 5667777777888888888888887777763321 1123344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHccCChHHHHHHHHHHHHcCCCC--C
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVS---------------ALSACARLGELEQGKNIHRYIELNQIRV--D 277 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~ 277 (490)
...+...|++++|.+.++++.+.... +...+.. .+..+...|++++|...++++.+.. +. +
T Consensus 139 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~ 216 (368)
T 1fch_A 139 AVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSID 216 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCccc
Confidence 44455555555555555554443211 1111100 1222225566666666666665553 22 3
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGC 354 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 354 (490)
..++..+..+|.+.|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 45555555555555665555555554432 234455555566666666666666666655532 22345555666666
Q ss_pred hccCcHHHHHHHHHHhHHhhCCC---------CCchHHHHHHhhhhhcCCHHHHHHHHh
Q 042265 355 SHAGLVDEARKLFDEMESVYGVS---------KELKHYGCMADLLGRAGLIEEALEMIK 404 (490)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (490)
.+.|++++|...|+++.+..... .....|..+..+|...|++++|..+++
T Consensus 296 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 66666666666666655421000 013344445555555555555544443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.7e-17 Score=156.04 Aligned_cols=378 Identities=10% Similarity=-0.057 Sum_probs=220.1
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhC-----C--CCC-CcccHHHHHHHHhccCCcHHHHHHHHHHHHhC-----
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTV-----S--IPP-DFYSFPFLLRACSQLCSHSLAQTIHSQVLKLG----- 141 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 141 (490)
....||.+...+...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556888888888899999999988876542 1 122 23467788888888888888888888776531
Q ss_pred -C-CCchhHHHHHHHHHHhc--CChHHHHHHHHhccc--C-CchhHHHHHHH---HHhcCCHHHHHHHHhhCC---CCCe
Q 042265 142 -F-ICDVFVLNSLMHVYCVF--HRLRDAQELFDEILY--R-DVVSCNTLIDG---YVKAGDLAHARQLFDRMP---FRDA 208 (490)
Q Consensus 142 -~-~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~---~~~~ 208 (490)
. .....++..+..++.+. +++++|.+.|++..+ | ++..+..+..+ +...++.++|++.+++.. ..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 0 12245555555555543 467888888888743 3 33344444443 334566666766666543 2244
Q ss_pred ehHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHH
Q 042265 209 VSWGTLVAGYAQ----SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGL 284 (490)
Q Consensus 209 ~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 284 (490)
.++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+.. |.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 555555544443 356677777777776643 3455566777777777778888877777777664 4455666666
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 285 VDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
..+|...+....+.. ... ........+..+.|...+++..+.. +.+..++..+...+...|++++|.
T Consensus 288 g~~y~~~~~~~~~~~------~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLR------ENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhHH------HHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHH
Confidence 655543221111100 000 0000111223566777777776643 223456667777888888888888
Q ss_pred HHHHHhHHhhCCCCCc--hHHHHHHh-hhhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 365 KLFDEMESVYGVSKEL--KHYGCMAD-LLGRAGLIEEALEMIKKMP-MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 365 ~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
..|+++.+. ...+.. ..+..+.. .+...|++++|+..+++.. ..|+.... .+....+..++++.++
T Consensus 355 ~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~---------~~~~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 355 YYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK---------EKMKDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH---------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH---------HHHHHHHHHHHHHHHH
Confidence 888888763 222211 11222222 2346788888888887643 33322211 1223455677888888
Q ss_pred hCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCC
Q 042265 441 LKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 477 (490)
.+|+++.++..++.+|...|++++|.+.|++..+.+-
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999987653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-18 Score=158.13 Aligned_cols=274 Identities=12% Similarity=-0.038 Sum_probs=185.7
Q ss_pred CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 042265 74 PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLM 153 (490)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 153 (490)
.+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668888888888888888888888887753 3456678888888888888888888888888775 55677888888
Q ss_pred HHHHhcCChHHHHHHHHhcccCCch---hHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHH
Q 042265 154 HVYCVFHRLRDAQELFDEILYRDVV---SCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQL 230 (490)
Q Consensus 154 ~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 230 (490)
.+|...|++++|...++++.+.++. .+..+. .....+..+...+...|++++|.+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKEL 199 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------------------------------------CCHHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHH
Confidence 8888888888888888877543221 111110 0123344556667777777777777
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---
Q 042265 231 FCNMMDLDIK-PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--- 306 (490)
Q Consensus 231 ~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 306 (490)
|+++.+.... ++...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+
T Consensus 200 ~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278 (365)
T ss_dssp HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 7777765321 146677777777777777777777777777765 55667777777777778888888777776553
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----------CCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 042265 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIK-----------PDGVTILGALVGCSHAGLVDEARKLFDEME 371 (490)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (490)
.+..++..+..+|...|++++|...|+++.+.... .+...+..+..++...|+.+.+.....+-.
T Consensus 279 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 34567777778888888888888888877653211 125677888888888888888887776543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-17 Score=149.04 Aligned_cols=246 Identities=9% Similarity=-0.000 Sum_probs=202.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDN--IALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG 292 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (490)
++-....|+++.|+..++..... .|+. .....+.+++...|+++.|...++. .-+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567789999999999876543 3443 3556778999999999999986654 23667788889999999999
Q ss_pred CHHHHHHHHhccC----CC-CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 293 YINTAIEIFESSQ----EK-NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 293 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
+.++|.+.++++. .| ++..+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 456677788999999999999999987 457788999999999999999999999
Q ss_pred HHhHHhhCCCCCchHH---HHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 368 DEMESVYGVSKELKHY---GCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
+++.+. . |+.... ..++..+...|++++|..+|+++.. .| ++..++.++.++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~-~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ-D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH-C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh-C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999985 2 443211 2233444556999999999998752 33 88999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHH-HHHHHHHHhcC
Q 042265 443 PEDGGVYKVLADVYANADRWED-VVKIRRSLDAG 475 (490)
Q Consensus 443 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 475 (490)
|+++.++..++.++...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 57888887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-16 Score=151.76 Aligned_cols=367 Identities=10% Similarity=-0.036 Sum_probs=224.9
Q ss_pred CCCChhHHHHhhccCC------------CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhC----CC--CC-CcccHHHH
Q 042265 57 TTDPLSYALSIFNNIP------------YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTV----SI--PP-DFYSFPFL 117 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~--~p-~~~~~~~l 117 (490)
..|+.++|++.|++.. +....+|+.+..+|...|++++|...+++..+. .- .+ ...++...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 5799999999997531 234568999999999999999999999987642 11 11 12345544
Q ss_pred HHHHhc--cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHhcCChHHHHHHHHhccc--C-CchhHHHHHHHHHh
Q 042265 118 LRACSQ--LCSHSLAQTIHSQVLKLGFICDVFVLNSLMHV---YCVFHRLRDAQELFDEILY--R-DVVSCNTLIDGYVK 189 (490)
Q Consensus 118 l~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 189 (490)
..++.. .+++++|...|++.++.. |.++..+..+..+ +...++.++|++.+++..+ | +...+..+...+..
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~ 221 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHK 221 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHH
Confidence 444444 457999999999999976 5566666666555 4456788889999888743 3 44566666555544
Q ss_pred ----cCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHH
Q 042265 190 ----AGDLAHARQLFDRMP---FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQG 262 (490)
Q Consensus 190 ----~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 262 (490)
.+++++|.+.+++.. ..+..++..+...|...|++++|...+++..+.. +-+...+..+..++...+....
T Consensus 222 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~- 299 (472)
T 4g1t_A 222 MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVM- 299 (472)
T ss_dssp CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHH-
T ss_pred HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhh-
Confidence 467889999998754 3467789999999999999999999999998853 3345566666665532211110
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC---CCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 042265 263 KNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ---EKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR 339 (490)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~ 339 (490)
... .. .........+..+.|...+++.. ..+...+..+...+...|++++|+..|++.....
T Consensus 300 --------~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 300 --------NLR-EN------GMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp --------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred --------hHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 000 00 00111112233566777776654 3466788889999999999999999999988864
Q ss_pred CCCCHH--HHHHHHH-HhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC-CCCC-CHHH
Q 042265 340 IKPDGV--TILGALV-GCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM-PMGG-DVFV 414 (490)
Q Consensus 340 ~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 414 (490)
..|... .+..+.. .....|+.++|+..|++..+. .|+....... ...+.+++++. ...| ++.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~ 432 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKM---------KDKLQKIAKMRLSKNGADSEA 432 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHH
Confidence 433321 1222222 234678999999999998863 3443222211 22333444332 2234 7789
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 415 WSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 415 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
|..++..+...|++++|++.|+++++..|.+|.+...+|
T Consensus 433 ~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 433 LHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 999999999999999999999999999888887766554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-16 Score=146.10 Aligned_cols=240 Identities=13% Similarity=-0.006 Sum_probs=131.6
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
+...|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45566777777788888888888888877653 3355567777777777788888888888877764 556677777777
Q ss_pred HHHhcCChHHHHHHHHhcccCCc---hhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHH-HH-HHHhcCChhHHHH
Q 042265 155 VYCVFHRLRDAQELFDEILYRDV---VSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTL-VA-GYAQSDQCEEAIQ 229 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~ 229 (490)
++...|++++|.+.++++...++ ..+..+.... ++......+ .. .+...|++++|.+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 77777777777777777643321 1111110000 000011111 11 2455566666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---
Q 042265 230 LFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--- 306 (490)
Q Consensus 230 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 306 (490)
.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|+++.+
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 666666543 2345556666666666666666666666665543 33344444444444444444444444443321
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHHH
Q 042265 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMI 336 (490)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 336 (490)
.+...+..+...+...|++++|.+.++++.
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 122333344444444444444444444433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-15 Score=135.05 Aligned_cols=227 Identities=11% Similarity=-0.018 Sum_probs=140.8
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CChhhHHHHHH
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIR--VDSFLSTGLVD 286 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 286 (490)
..|..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...++.+.+.... ++.. .
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~--- 77 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK---V--- 77 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH---H---
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH---H---
Confidence 345666666677777777777777666654 55566666666666666666666666666554210 0100 0
Q ss_pred HHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHH
Q 042265 287 FYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
....+..+...+...|++++|...+++.... .|+. ..+...|++++|...
T Consensus 78 ---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 78 ---------------------ISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHH
Confidence 0234445555555566666666666665553 2332 234445666667766
Q ss_pred HHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
++++.. ..+.+...+..+...+...|++++|...+++.. ..| +...+..++..+...|++++|+..++++++..|+
T Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 128 AEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 666665 333445566666666777777777777776643 122 5667777777777777777777777777777777
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 445 DGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++.++..++.++.+.|++++|...+++..+.
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 7777777777777777777777777776543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.2e-16 Score=136.81 Aligned_cols=235 Identities=12% Similarity=0.015 Sum_probs=171.3
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCC----HHHHHH
Q 042265 177 VVSCNTLIDGYVKAGDLAHARQLFDRMPF--RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI--KPD----NIALVS 248 (490)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~~ 248 (490)
...+..+...+...|++++|.+.|++... .+..+|..+..++...|++++|.+.+++..+... .|+ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 35788889999999999999999987532 6778899999999999999999999999887431 122 467788
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHH
Q 042265 249 ALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLS 328 (490)
Q Consensus 249 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 328 (490)
+..++...|++++|...++++.+.. |+. .. +...|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~-------------------------------~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DI-------------------------------LTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HH-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HH-------------------------------HHHHhHHHHH
Confidence 8888888999999999888888764 221 12 3334455556
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-
Q 042265 329 LVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP- 407 (490)
Q Consensus 329 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 407 (490)
...++++.... +.+...+..+...+...|++++|...++++.+ ..+.+...+..+...+...|++++|...+++..
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666555532 11334556666666777777777777777766 334456667777777777777777777777643
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCCchHHHHHH
Q 042265 408 MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK------PEDGGVYKVLAD 454 (490)
Q Consensus 408 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 454 (490)
..| +...+..+...+...|++++|...++++++.. |++..++..+..
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 223 67788888888999999999999999999877 776666655544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-16 Score=132.96 Aligned_cols=195 Identities=12% Similarity=-0.011 Sum_probs=143.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042265 275 RVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGAL 351 (490)
Q Consensus 275 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 351 (490)
|++...+..+...+.+.|++++|...|++..+ .++..+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45556666666677777777777777766543 244566677777777778888888887777653 22456677777
Q ss_pred HHhhcc-----------CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC--CCCCHHHHHHH
Q 042265 352 VGCSHA-----------GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP--MGGDVFVWSGL 418 (490)
Q Consensus 352 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 418 (490)
..+... |++++|...+++..+ ..+.+...+..+..+|...|++++|+..|++.. . .++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHH
Confidence 777777 999999999999988 345567788889999999999999999998753 3 688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 419 LGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 419 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
...+...|++++|+..++++++..|+++.++..++.++.+.|++++|.+.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.7e-16 Score=150.00 Aligned_cols=373 Identities=9% Similarity=-0.033 Sum_probs=212.4
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCc---HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 042265 82 IIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSH---SLAQTIHSQVLKLGFICDVFVLNSLMHVYCV 158 (490)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 158 (490)
+...+.+.|++++|.++|++..+.| +...+..+...+...|+. ++|...|+...+. ++..+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555666777777777777776654 333444455555555666 6777777776643 44555555554444
Q ss_pred cC-----ChHHHHHHHHhcccC-CchhHHHHHHHHHhcCCHHHH---HHHHhhCC-CCCeehHHHHHHHHHhcCChhHHH
Q 042265 159 FH-----RLRDAQELFDEILYR-DVVSCNTLIDGYVKAGDLAHA---RQLFDRMP-FRDAVSWGTLVAGYAQSDQCEEAI 228 (490)
Q Consensus 159 ~g-----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 228 (490)
.+ ++++|...|++..++ +...+..+...|...+..+++ .+.+.... ..+...+..+...|...+.++++.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 44 566777777776554 445666666666655543332 23332222 124566667777777777555444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CCHHHHHHHH
Q 042265 229 QLFCNMMDLDIKPDNIALVSALSACARLG---ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC----GYINTAIEIF 301 (490)
Q Consensus 229 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~ 301 (490)
.....+.+.-...+...+..+...|...| +.++|...|+...+.| +++...+..+..+|... +++++|...|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 44222222111122226666777777777 7777777777777776 55555556666666554 6777888887
Q ss_pred hccCCCCeehHHHHHHH-H--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC-----cHHHHHHHHHHhHHh
Q 042265 302 ESSQEKNLFTWNAMLVG-L--AMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAG-----LVDEARKLFDEMESV 373 (490)
Q Consensus 302 ~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~ 373 (490)
++....++..+..+... + ...+++++|...|++..+.| +......+...|. .| ++++|..+|++..
T Consensus 241 ~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-- 314 (452)
T 3e4b_A 241 EKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-- 314 (452)
T ss_dssp HHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--
T ss_pred HHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--
Confidence 77663355666666665 3 35678888888888877765 4555556666555 44 7888888887776
Q ss_pred hCCCCCchHHHHHHhhhhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCC
Q 042265 374 YGVSKELKHYGCMADLLGR----AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~ 445 (490)
+.++.....|...|.. ..++++|.++|++....+++.....+...|.. ..+.++|..+++++.+..+..
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 2345566666666655 34788888888877666677777777777663 457888888888887755433
Q ss_pred CchHHHHHHHH--HhcCChHHHHHHHHHHh
Q 042265 446 GGVYKVLADVY--ANADRWEDVVKIRRSLD 473 (490)
Q Consensus 446 ~~~~~~l~~~~--~~~g~~~~A~~~~~~m~ 473 (490)
....+.... ...++..+|..+.++-.
T Consensus 392 --a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 392 --ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp --HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 333333332 23345666666665544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-15 Score=134.57 Aligned_cols=241 Identities=11% Similarity=-0.063 Sum_probs=188.7
Q ss_pred hcCChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 042265 220 QSDQCEEAIQLFCNMMDLDIK---PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINT 296 (490)
Q Consensus 220 ~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 296 (490)
..|++++|++.|+++.+.... .+...+..+..++...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888875321 134567788888888899999999888888875 5677888888888999999999
Q ss_pred HHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 297 AIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 297 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
|...|+++.+ .+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998887664 35678888999999999999999999999885 455444444555567789999999999888873
Q ss_pred hCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 042265 374 YGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG------DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG 447 (490)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 447 (490)
.+++...+. ++..+...++.++|...+++..... +...+..++..+...|++++|...++++++..|++..
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 445555544 7777788888999999998866443 2578889999999999999999999999999998754
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 042265 448 VYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
. .+.++...|++++|.+.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 366788899999998876
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-15 Score=143.80 Aligned_cols=344 Identities=12% Similarity=-0.006 Sum_probs=238.1
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHHhcccCCchhHHHHHHHHHhcC-
Q 042265 116 FLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRL---RDAQELFDEILYRDVVSCNTLIDGYVKAG- 191 (490)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~- 191 (490)
.+...+.+.|++++|.++|+...+.| +...+..|...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35566778899999999999999887 334455566667778888 99999999998777778888888666655
Q ss_pred ----CHHHHHHHHhhCCCC-CeehHHHHHHHHHhcCChhH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHH
Q 042265 192 ----DLAHARQLFDRMPFR-DAVSWGTLVAGYAQSDQCEE---AIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGK 263 (490)
Q Consensus 192 ----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 263 (490)
++++|.+.|++...+ +...+..|...|...+..++ +.+.+......|. ......+...|...+.++++.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 789999999887655 66788899999988766444 4555555555442 345566777777777555544
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHhccCCC-Cee--hHHHHHHHHHHc----CChHHHHHHHH
Q 042265 264 NIHRYIELNQIRVDSFLSTGLVDFYAKCG---YINTAIEIFESSQEK-NLF--TWNAMLVGLAMH----GLGRLSLVYFS 333 (490)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~-~~~--~~~~l~~~~~~~----~~~~~A~~~~~ 333 (490)
.....+.+.-...++..+..|..+|.+.| +.++|.+.|++..+. +.. .+..+...|... +++++|...|+
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 44333333322344458888999999999 999999999887643 223 336677777554 79999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH-h--hccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcC-----CHHHHHHHHhh
Q 042265 334 RMIEARIKPDGVTILGALVG-C--SHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAG-----LIEEALEMIKK 405 (490)
Q Consensus 334 ~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~ 405 (490)
+.. .| +...+..+... + ...+++++|...|++..+. + +...+..|...|. .| ++++|.++|++
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 987 33 44555555555 3 5689999999999999885 4 6667777888887 55 99999999999
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHhcCCC
Q 042265 406 MPMGGDVFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN----ADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 406 ~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 477 (490)
.. .+++.....+...|.. ..++++|..+++++.+. .++.+...|+.+|.. ..+.++|..++++..+.|.
T Consensus 313 Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 313 AV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred Hh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88 7799999999988876 44999999999999874 445689999999985 4589999999999888774
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-15 Score=133.10 Aligned_cols=254 Identities=9% Similarity=-0.002 Sum_probs=142.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 042265 179 SCNTLIDGYVKAGDLAHARQLFDRMP---FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD--NIALVSALSAC 253 (490)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~ 253 (490)
.+......+...|++++|++.|++.. ..+...+..+..++...|++++|++.+++..+....|+ ...|..+..++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 34455566666777777777766643 22445666666677777777777777776666321111 22356666666
Q ss_pred HccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHH
Q 042265 254 ARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 254 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~ 330 (490)
...|++++|...++++.+.. +.+..++..+..+|...|++++|...|++..+. +...|..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777766666654 445556666666666666666666666665542 23344444422233345555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCc---HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 331 YFSRMIEARIKPDGVTILGALVGCSHAGL---VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 331 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
.++++.+.. +.+...+..+...+...|+ +++|...++++.+.....|+.. -..
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~---------------------- 219 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-KDE---------------------- 219 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-HHH----------------------
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-hHH----------------------
Confidence 555555432 1123333334444444444 4444444444433211111110 000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 042265 408 MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD 460 (490)
Q Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (490)
....+..+...|...|++++|.+.++++++.+|+++.+...+.......+
T Consensus 220 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 220 ---LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 12467778888999999999999999999999999988877776655443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.3e-17 Score=159.58 Aligned_cols=147 Identities=11% Similarity=0.122 Sum_probs=119.1
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCC-------CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 042265 177 VVSCNTLIDGYVKAGDLAHARQLFDRMP-------FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSA 249 (490)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 249 (490)
..+|+++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3489999999999999999999986643 679999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC-----CeehHHHHHHHHHHcC
Q 042265 250 LSACARLGEL-EQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK-----NLFTWNAMLVGLAMHG 323 (490)
Q Consensus 250 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~ 323 (490)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++......+ .+.+...|...|.+.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 788999999999999999999999998777665444444443333321 1334444555555444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-17 Score=164.01 Aligned_cols=125 Identities=12% Similarity=0.096 Sum_probs=110.9
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC-------CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP-------YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTV 105 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 105 (490)
....+||+||..|+ +.|++++|.++|++|. .||+.+||+||++|++.|++++|.++|++|.+.
T Consensus 125 ~~~~TynaLIdglc----------K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~ 194 (1134)
T 3spa_A 125 GQQQRLLAFFKCCL----------LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194 (1134)
T ss_dssp HHHHHHHHHHHHHH----------HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH----------hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 45568999999999 9999999999997652 699999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHHHHhccCCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 042265 106 SIPPDFYSFPFLLRACSQLCSH-SLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQE 167 (490)
Q Consensus 106 ~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 167 (490)
|+.||..||+++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.+
T Consensus 195 G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred CCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 9999999999999999999985 7899999999999999999999999877666543333333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=6.6e-14 Score=125.06 Aligned_cols=224 Identities=13% Similarity=-0.045 Sum_probs=121.1
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCChhhHH
Q 042265 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACAR----LGELEQGKNIHRYIELNQIRVDSFLST 282 (490)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (490)
++.++..+...+...|++++|.+.|++..+. -+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556677777777777888888887777763 244566666677777 777777777777777664 455555
Q ss_pred HHHHHHHh----cCCHHHHHHHHhccCCC-CeehHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042265 283 GLVDFYAK----CGYINTAIEIFESSQEK-NLFTWNAMLVGLAM----HGLGRLSLVYFSRMIEARIKPDGVTILGALVG 353 (490)
Q Consensus 283 ~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 353 (490)
.+...|.. .+++++|...|++..+. +...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 56666666555544332 33444455555555 555555555555555443 23334444444
Q ss_pred hhc----cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-
Q 042265 354 CSH----AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR----AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI- 424 (490)
Q Consensus 354 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~- 424 (490)
+.. .+++++|...|++..+. .+...+..+...|.. .+++++|...+++....++...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 444 45555555555554442 122333444444444 44444444444443333334444444444444
Q ss_pred ---cCCHHHHHHHHHHHHhhCC
Q 042265 425 ---HGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 425 ---~~~~~~a~~~~~~~~~~~p 443 (490)
.+++++|++.++++.+..|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 4444444444444444444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-14 Score=134.83 Aligned_cols=246 Identities=12% Similarity=0.069 Sum_probs=200.2
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGE-LEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
...|..+..++.+.|++++|++.++++++.. +-+...|..+..++...|+ +++|+..++++.+.. +.+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567788888888999999999999888754 3356678888888888886 999999999998886 667888888899
Q ss_pred HHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-cCcHHH
Q 042265 287 FYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH-AGLVDE 362 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~ 362 (490)
++...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++.... +...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999988764 36678888999999999999999999999886432 66788888888888 565466
Q ss_pred H-----HHHHHHhHHhhCCCCCchHHHHHHhhhhhcC--CHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcC--------
Q 042265 363 A-----RKLFDEMESVYGVSKELKHYGCMADLLGRAG--LIEEALEMIKKMPMGG-DVFVWSGLLGGCRIHG-------- 426 (490)
Q Consensus 363 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~-------- 426 (490)
| ...++++.. -.+.+...|..+..++...| ++++|++.++++...| +...+..++..|.+.|
T Consensus 254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 6 588888887 34556778888888888888 6899999988874444 7788888999988764
Q ss_pred -CHHHHHHHHHHH-HhhCCCCCchHHHHHHHHHh
Q 042265 427 -NVEIAEAAAEHV-MKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 427 -~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 458 (490)
..++|+.+++++ .+.+|.....|..++..+..
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258999999999 89999999888888877654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=2e-14 Score=123.46 Aligned_cols=194 Identities=14% Similarity=0.028 Sum_probs=120.8
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 042265 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVD 286 (490)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 286 (490)
+...+..+...+.+.|++++|...|++.++.. +.+...+..+..++.+.|++++|...+++..+.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 55667777777888888888888888877653 3356677777777788888888888888877775 556667777777
Q ss_pred HHHhc-----------CCHHHHHHHHhccCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042265 287 FYAKC-----------GYINTAIEIFESSQE--K-NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALV 352 (490)
Q Consensus 287 ~~~~~-----------~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 352 (490)
++... |++++|+..|++..+ | +...+..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 77776 666666666665542 2 34456666666666666666666666666654 45566666666
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM 406 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (490)
++...|++++|...|+++.+ ..+.+...+..+...+...|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666665 23444555666666666666666666666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.8e-14 Score=124.61 Aligned_cols=223 Identities=12% Similarity=-0.044 Sum_probs=188.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHhccCCC-CeehHHHHH
Q 042265 242 DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK----CGYINTAIEIFESSQEK-NLFTWNAML 316 (490)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~ 316 (490)
+...+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+. ++..+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4567778888888999999999999998883 355677888888999 99999999999887643 667888888
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 317 VGLAM----HGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH----AGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 317 ~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 88888 999999999999998875 66778888888888 89999999999999884 3 5566777888
Q ss_pred hhhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh--
Q 042265 389 LLGR----AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN-- 458 (490)
Q Consensus 389 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 458 (490)
.|.. .+++++|...+++....+++..+..+...|.. .+++++|+..++++.+..| +..+..++.+|.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8887 89999999999887666688888889999988 9999999999999998766 5578899999998
Q ss_pred --cCChHHHHHHHHHHhcCC
Q 042265 459 --ADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 459 --~g~~~~A~~~~~~m~~~~ 476 (490)
.+++++|.+.+++..+.+
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 899999999999887665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9.1e-14 Score=122.47 Aligned_cols=206 Identities=13% Similarity=0.009 Sum_probs=114.8
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~-------- 106 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNAR-------- 106 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH--------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHH--------
Confidence 3445555555666666666666666555432 2234455555555555555555555555555442 22233
Q ss_pred HHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP-DGVTILGALVGCSHAGLVDEARKL 366 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 366 (490)
.+..+...+...|++++|.+.++++...+..| +...+..+...+...|++++|...
T Consensus 107 -----------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 107 -----------------------VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp -----------------------HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33344444445555555555555554422223 334455555666666666666666
Q ss_pred HHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 367 FDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
++++.+. .+.+...+..+...+...|++++|...++++.. .| +...+..+...+...|++++|.+.++++.+..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 6666652 233455556666666666666666666665432 22 5556666666677777777777777777777776
Q ss_pred CCch
Q 042265 445 DGGV 448 (490)
Q Consensus 445 ~~~~ 448 (490)
++..
T Consensus 242 ~~~~ 245 (252)
T 2ho1_A 242 SLEY 245 (252)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 6533
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-14 Score=124.53 Aligned_cols=224 Identities=8% Similarity=-0.057 Sum_probs=147.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC--CCe----ehHHHHHHHHHHc
Q 042265 249 ALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE--KNL----FTWNAMLVGLAMH 322 (490)
Q Consensus 249 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~ 322 (490)
....+...|++++|...++++.+.. +.+...+..+..+|...|++++|...++++.+ ++. ..|..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344444455555555555544443 23334455555555555555555555544432 111 1356666677777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHH
Q 042265 323 GLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEM 402 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (490)
|++++|+..+++..+... .+...+..+...+...|++++|...+++..+ ..+.+...+..+...+...+++++|.+.
T Consensus 88 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777766432 2456777777788888888888888888776 3444556666666233344588888888
Q ss_pred HhhCC-CCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhC---CCC-----CchHHHHHHHHHhcCChHHHHHHH
Q 042265 403 IKKMP-MGG-DVFVWSGLLGGCRIHGN---VEIAEAAAEHVMKLK---PED-----GGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 403 ~~~~~-~~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
|+++. ..| +...+..+...+...|+ +++|+..++++++.. |+. ..++..++..|...|++++|.+.+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 87754 223 57777778888888887 888999999998844 432 147888999999999999999999
Q ss_pred HHHhcCC
Q 042265 470 RSLDAGK 476 (490)
Q Consensus 470 ~~m~~~~ 476 (490)
++..+..
T Consensus 245 ~~al~~~ 251 (272)
T 3u4t_A 245 KNILALD 251 (272)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9987654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.3e-15 Score=139.70 Aligned_cols=260 Identities=11% Similarity=-0.003 Sum_probs=143.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHc----C-CCCChhhHHHH
Q 042265 214 LVAGYAQSDQCEEAIQLFCNMMDLDIKPDN----IALVSALSACARLGELEQGKNIHRYIELN----Q-IRVDSFLSTGL 284 (490)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l 284 (490)
+...+...|++++|...|+++.+.+. .+. ..+..+..++...|++++|...++++.+. + .+....++..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 34444445555555555555444321 111 23444444444555555555554444332 0 01123344445
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC---------CeehHHHHHHHHHHcCC-----------------hHHHHHHHHHHHHC
Q 042265 285 VDFYAKCGYINTAIEIFESSQEK---------NLFTWNAMLVGLAMHGL-----------------GRLSLVYFSRMIEA 338 (490)
Q Consensus 285 ~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~~ 338 (490)
...|...|++++|...+++..+. ...++..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 55555555555555555443320 12244555555555666 66666665554331
Q ss_pred ----CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCCC-
Q 042265 339 ----RIKP-DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMPM- 408 (490)
Q Consensus 339 ----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 408 (490)
+-.| ...++..+...+...|++++|...+++..+.....++ ...+..+...|...|++++|.+.+++...
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1111 1235566666677777777777777776653111111 12566677777777887777777765431
Q ss_pred ---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 409 ---GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED------GGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 409 ---~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.+ ...++..+...+...|++++|...++++++..+.. ..++..++.+|.+.|++++|.+.+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 24567777777888888888888888887743332 23677788888888888888888877643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=127.25 Aligned_cols=213 Identities=11% Similarity=0.053 Sum_probs=119.4
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
...|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~----------- 89 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SS----------- 89 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Cc-----------
Confidence 3445555555566666666666666555532 2234455555555555555555555555554442 22
Q ss_pred HHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 90 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 90 --------------------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred --------------------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 23344445555556666666666666665542 224556666666777777777777777
Q ss_pred HHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042265 368 DEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-G-GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 445 (490)
+++.+. .+.+...+..+...+...|++++|.+.++++.. . .+..++..+...+...|++++|...++++++..|++
T Consensus 149 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 777662 344556666677777777777777777766431 2 256777777888888888888888888888888887
Q ss_pred CchHHHHHHHH
Q 042265 446 GGVYKVLADVY 456 (490)
Q Consensus 446 ~~~~~~l~~~~ 456 (490)
+.++..+....
T Consensus 227 ~~~~~~~~~l~ 237 (243)
T 2q7f_A 227 MLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHHHH
Confidence 76666555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.9e-13 Score=115.92 Aligned_cols=134 Identities=14% Similarity=-0.005 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 311 TWNAMLVGLAMH-GLGRLSLVYFSRMIEARIKPD-GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 311 ~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
.+..+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+..
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 155 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHH
Confidence 334444444444 555555555555544211222 334444555555555555555555555542 2223344444444
Q ss_pred hhhhcCCHHHHHHHHhhCCC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 389 LLGRAGLIEEALEMIKKMPM--G-GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.+...|++++|.+.++++.. . .+...+..+...+...|+.+.|..+++.+.+..|+++
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 44455555555544444321 1 2344444444445555555555555555555555554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-13 Score=119.61 Aligned_cols=195 Identities=11% Similarity=-0.019 Sum_probs=152.1
Q ss_pred cccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 042265 76 TFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHV 155 (490)
Q Consensus 76 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 155 (490)
...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678889999999999999999999998763 3456678888899999999999999999999875 5678888889999
Q ss_pred HHhcCChHHHHHHHHhccc--C---CchhHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhcCChhHH
Q 042265 156 YCVFHRLRDAQELFDEILY--R---DVVSCNTLIDGYVKAGDLAHARQLFDRMP---FRDAVSWGTLVAGYAQSDQCEEA 227 (490)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 227 (490)
+...|++++|.+.++++.. . +...+..+...+.+.|++++|.+.|+++. ..+...+..+...+...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998866 2 33466677777777788888877777653 22456677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 042265 228 IQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQ 273 (490)
Q Consensus 228 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 273 (490)
...++++.+.. +.+...+..+...+...|+.++|..+++.+.+..
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777776643 3455566667777777777777777777777654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=135.69 Aligned_cols=267 Identities=12% Similarity=0.032 Sum_probs=128.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C----eehHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHH
Q 042265 179 SCNTLIDGYVKAGDLAHARQLFDRMPF--R-D----AVSWGTLVAGYAQSDQCEEAIQLFCNMMDL----DIKPD-NIAL 246 (490)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~ 246 (490)
.+......+...|++++|...|+++.. | + ..++..+...+...|++++|...+++.... +-.|. ...+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 344455556666666666666655431 1 2 234555666666666666666666654332 11111 2344
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCC--------------------HHHHHHHH
Q 042265 247 VSALSACARLGELEQGKNIHRYIELNQIR-V----DSFLSTGLVDFYAKCGY--------------------INTAIEIF 301 (490)
Q Consensus 247 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~--------------------~~~A~~~~ 301 (490)
..+...+...|++++|...++++.+.... + ...++..+...|...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 55555666666666666666655543100 0 12345555555555565 55555555
Q ss_pred hccCC-----C----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhccCcHHHHHHHH
Q 042265 302 ESSQE-----K----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI-KPD----GVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 302 ~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
++..+ . ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44321 0 112344445555555555555555555544210 111 113444444555555555555555
Q ss_pred HHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 042265 368 DEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMPM----GG----DVFVWSGLLGGCRIHGNVEIAEAAA 435 (490)
Q Consensus 368 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 435 (490)
++..+.....++ ..++..+...|...|++++|.+.+++... .+ ...++..+...+...|++++|...+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 554432110111 23344455555555555555555544321 11 1334444555555555555555555
Q ss_pred HHHHhhCCCC
Q 042265 436 EHVMKLKPED 445 (490)
Q Consensus 436 ~~~~~~~p~~ 445 (490)
++++++.+..
T Consensus 331 ~~al~~~~~~ 340 (406)
T 3sf4_A 331 EKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5555555444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-14 Score=126.72 Aligned_cols=241 Identities=13% Similarity=-0.043 Sum_probs=126.7
Q ss_pred CCchhHHHHHHHhhhCCCC---CCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 042265 90 SSPLNAVVLFSQMRTVSIP---PDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQ 166 (490)
Q Consensus 90 g~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 166 (490)
|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+.. +.+..++..+..++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555443210 122334444445555555555555555555543 334444555555555555555555
Q ss_pred HHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 042265 167 ELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIAL 246 (490)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 246 (490)
..|+++...+ ..+..++..+...+...|++++|.+.|+++.+. .|+....
T Consensus 98 ~~~~~al~~~----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 147 (275)
T 1xnf_A 98 EAFDSVLELD----------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFR 147 (275)
T ss_dssp HHHHHHHHHC----------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHhcC----------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHH
Confidence 5444442211 123445556666666666666666666666653 2333333
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCC-------eehHHHHHHHH
Q 042265 247 VSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKN-------LFTWNAMLVGL 319 (490)
Q Consensus 247 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~ 319 (490)
...+..+...|++++|...++...... +++...+ .++..+...++.++|...+++..+.+ ...+..+...+
T Consensus 148 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 225 (275)
T 1xnf_A 148 SLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY 225 (275)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHH
Confidence 334444455566677776666665543 3333333 35555666666667777776665432 35666777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 320 AMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 320 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
...|++++|...|++..... |+. +.....++...|++++|.+.+
T Consensus 226 ~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 226 LSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 77788888888877777643 322 122234455667777776665
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-14 Score=130.21 Aligned_cols=228 Identities=10% Similarity=0.017 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHhccCC---CCeehHHHHHHH
Q 042265 243 NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGY-INTAIEIFESSQE---KNLFTWNAMLVG 318 (490)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~ 318 (490)
...|..+..++...|++++|+..++++++.. +.+..+|..+..++...|+ +++|+..|+++.+ .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3467778888899999999999999999987 6778899999999999997 9999999998774 366789999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh-cCCHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR-AGLIE 397 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 397 (490)
+...|++++|+..|+++++... -+...|..+..++...|++++|+..++++.+ ..+.+...|+.+..++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998643 2678899999999999999999999999998 456678889999999998 66657
Q ss_pred HH-----HHHHhhCC-CCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC--------
Q 042265 398 EA-----LEMIKKMP-MGG-DVFVWSGLLGGCRIHG--NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD-------- 460 (490)
Q Consensus 398 ~A-----~~~~~~~~-~~~-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 460 (490)
+| ++.+++.. ..| +...|..+...+...| ++++|++.++++ +..|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 47776643 344 8889999999999888 689999999998 899999999999999999874
Q ss_pred -ChHHHHHHHHHH-hcC
Q 042265 461 -RWEDVVKIRRSL-DAG 475 (490)
Q Consensus 461 -~~~~A~~~~~~m-~~~ 475 (490)
.+++|.++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 358999999998 443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-14 Score=130.84 Aligned_cols=263 Identities=11% Similarity=0.020 Sum_probs=178.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CC-CCChhhHH
Q 042265 212 GTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD----NIALVSALSACARLGELEQGKNIHRYIELN----QI-RVDSFLST 282 (490)
Q Consensus 212 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 282 (490)
......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...++++.+. +. +....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 344555666677777777776666642 112 245556666666677777777666665433 11 11244556
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-----CC----eehHHHHHHHHHHcCC--------------------hHHHHHHHH
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQE-----KN----LFTWNAMLVGLAMHGL--------------------GRLSLVYFS 333 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 333 (490)
.+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 666677777777777776665442 11 2256666777777777 777777777
Q ss_pred HHHHC----CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHh
Q 042265 334 RMIEA----RIKP-DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIK 404 (490)
Q Consensus 334 ~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (490)
+.... +..| ....+..+...+...|++++|...+++..+.....++ ...+..+...+...|++++|...++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 65432 1111 2346677777888899999999999887753211111 2367788888999999999999887
Q ss_pred hCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHHHHHHHHhcCChHHHHHHHH
Q 042265 405 KMPM----GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED------GGVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 405 ~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
+... .+ ...++..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 7531 12 25677888888999999999999999998854432 3378889999999999999999999
Q ss_pred HHhcC
Q 042265 471 SLDAG 475 (490)
Q Consensus 471 ~m~~~ 475 (490)
+..+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 88764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-12 Score=125.35 Aligned_cols=416 Identities=7% Similarity=-0.021 Sum_probs=284.6
Q ss_pred HHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCC---c
Q 042265 19 IHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSS---P 92 (490)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~ 92 (490)
.++..+..+ . .|...|..++..+. +.++++.+..+|+++. +.+...|...+..-.+.|+ +
T Consensus 54 ~lE~~l~~n-p---~d~~~W~~yi~~~~----------~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~ 119 (679)
T 4e6h_A 54 KLNDMIEEQ-P---TDIFLYVKLLKHHV----------SLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDA 119 (679)
T ss_dssp HHHHHHHHC-T---TCHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCH
T ss_pred HHHHHHHHC-c---CCHHHHHHHHHHHH----------hcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchH
Confidence 455555655 2 79999999999999 8899999999999874 4567789999999999998 9
Q ss_pred hhHHHHHHHhhhCC-CCCCcccHHHHHHHHhccCCc--------HHHHHHHHHHHH-hCC-CC-chhHHHHHHHHHHh--
Q 042265 93 LNAVVLFSQMRTVS-IPPDFYSFPFLLRACSQLCSH--------SLAQTIHSQVLK-LGF-IC-DVFVLNSLMHVYCV-- 158 (490)
Q Consensus 93 ~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~--------~~a~~~~~~~~~-~g~-~~-~~~~~~~li~~~~~-- 158 (490)
+.+..+|++..... .+|+...|...+....+.++. +.+.++|+..+. .|. .+ +...|...+.....
T Consensus 120 ~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 120 AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 99999999998763 247888888877766555543 345577877665 455 44 45688888776543
Q ss_pred -------cCChHHHHHHHHhcccCCc----hhHHH---HHHHH----------HhcCCHHHHHHHHhh-------CCC--
Q 042265 159 -------FHRLRDAQELFDEILYRDV----VSCNT---LIDGY----------VKAGDLAHARQLFDR-------MPF-- 205 (490)
Q Consensus 159 -------~g~~~~A~~~~~~~~~~~~----~~~~~---l~~~~----------~~~~~~~~a~~~~~~-------~~~-- 205 (490)
.++++.+..+|++.+.... .+|.. +...+ -...+++.|...+.+ +..
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 3457889999998865311 22322 11111 011223334444432 111
Q ss_pred ------------C--C------eehHHHHHHHHHhcC-------ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 042265 206 ------------R--D------AVSWGTLVAGYAQSD-------QCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGE 258 (490)
Q Consensus 206 ------------~--~------~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 258 (490)
| + ...|...+.---..+ ..+.+..+|++++.. ++-....|...+..+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCc
Confidence 0 0 123444444333222 123456678887765 24466677777777788888
Q ss_pred hHHHH-HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC-------------CC------------eehH
Q 042265 259 LEQGK-NIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE-------------KN------------LFTW 312 (490)
Q Consensus 259 ~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~------------~~~~ 312 (490)
.++|. .+++...... |.+...+..++....+.|+++.|.++|+++.+ |+ ...|
T Consensus 359 ~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88896 9999998754 66677788888889999999999999987653 21 2357
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh
Q 042265 313 NAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH-AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG 391 (490)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 391 (490)
...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .++.+.|..+|+...+. .+.+...+...++...
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 77777777889999999999999875111123333332222223 35689999999999985 4455666778888888
Q ss_pred hcCCHHHHHHHHhhCCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 392 RAGLIEEALEMIKKMPMG-G----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
..|+.+.|..+|++.... + ....|...+..-.+.|+.+.+..+.+++.+..|+++ ....+.
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~ 581 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFT 581 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHH
Confidence 889999999999986533 2 346788888888889999999999999999999876 333333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=124.69 Aligned_cols=197 Identities=13% Similarity=0.083 Sum_probs=152.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042265 277 DSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVG 353 (490)
Q Consensus 277 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 353 (490)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 344555566666677777777777766543 245667777888888899999999999888763 3367788888999
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHH
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIA 431 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a 431 (490)
+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...++++.. .| +...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999984 456778888999999999999999999988642 23 788999999999999999999
Q ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 432 EAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+..++++.+..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999987653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-13 Score=114.17 Aligned_cols=165 Identities=12% Similarity=0.035 Sum_probs=135.2
Q ss_pred CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHH
Q 042265 308 NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMA 387 (490)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 387 (490)
++..|..+...+...|++++|++.|++..+... -+...+..+...+...|++++|...+..+.. ..+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 345677788888888888888888888877532 2566778888888888888888888888877 3455566777778
Q ss_pred hhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHH
Q 042265 388 DLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDV 465 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 465 (490)
..+...++++.|...+++.. ..| +...+..+...+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88888888988888887754 233 7888888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 042265 466 VKIRRSLDAG 475 (490)
Q Consensus 466 ~~~~~~m~~~ 475 (490)
.+.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999988765
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-13 Score=117.19 Aligned_cols=196 Identities=11% Similarity=-0.051 Sum_probs=156.8
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGC 354 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 354 (490)
..++..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.... +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44455555555566666666665554432 234566777777888888888888888887753 33677888899999
Q ss_pred hcc-CcHHHHHHHHHHhHHhhCCCC-CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 042265 355 SHA-GLVDEARKLFDEMESVYGVSK-ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 355 ~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 430 (490)
... |++++|...++++.+. +..| +...+..+...+...|++++|...++++. ..| +...+..++..+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 999 9999999999999873 3333 35778889999999999999999998864 233 78899999999999999999
Q ss_pred HHHHHHHHHhhCC-CCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 431 AEAAAEHVMKLKP-EDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 431 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|...++++++..| +++..+..++..+...|+.++|..+++.+.+.
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999 88888988899999999999999999998754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=133.21 Aligned_cols=212 Identities=8% Similarity=-0.029 Sum_probs=154.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHh
Q 042265 224 CEEAIQLFCNMMDLDIKPDNIALVSALSACARLGEL-EQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFE 302 (490)
Q Consensus 224 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 302 (490)
+++++..+++..... +.+...+..+..++...|++ ++|...++++.+.. +.
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~-------------------------- 135 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PE-------------------------- 135 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TT--------------------------
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CC--------------------------
Confidence 455555555444322 23444555555555556666 66666655555543 22
Q ss_pred ccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc---------CcHHHHHHHHHHhHHh
Q 042265 303 SSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA---------GLVDEARKLFDEMESV 373 (490)
Q Consensus 303 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~ 373 (490)
+...|..+...|...|++++|...|++..+. .|+...+..+...+... |++++|...++++.+
T Consensus 136 -----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~- 207 (474)
T 4abn_A 136 -----LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ- 207 (474)
T ss_dssp -----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-
T ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH-
Confidence 3345555666666667777777777777664 45667777777777777 888888888888887
Q ss_pred hCCCCCchHHHHHHhhhhhc--------CCHHHHHHHHhhCCC-C----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 374 YGVSKELKHYGCMADLLGRA--------GLIEEALEMIKKMPM-G----GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~-~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
-.+.+...+..+..+|... |++++|++.|++... . .+...|..+..+|...|++++|+..++++++
T Consensus 208 -~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 208 -MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp -HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455677788888888887 888888888887542 3 3888999999999999999999999999999
Q ss_pred hCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 441 LKPEDGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 441 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
.+|+++.++..++.++...|++++|.+.++++
T Consensus 287 l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 287 LDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999765443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-13 Score=128.91 Aligned_cols=94 Identities=15% Similarity=0.006 Sum_probs=50.9
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc-----ccHHHHHHHHhccCCcHHHHHHHHHHHHh----CCC-Cch
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF-----YSFPFLLRACSQLCSHSLAQTIHSQVLKL----GFI-CDV 146 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~-~~~ 146 (490)
..+......+...|++++|+..|++..+.+ |+. ..+..+...+...|+++.|...+++..+. +-+ ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455556666666666666666666542 221 34555555666666666666666655432 111 113
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhc
Q 042265 147 FVLNSLMHVYCVFHRLRDAQELFDEI 172 (490)
Q Consensus 147 ~~~~~li~~~~~~g~~~~A~~~~~~~ 172 (490)
.++..+...+...|++++|...+++.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~a 113 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRH 113 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555555666666666555554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=130.74 Aligned_cols=267 Identities=14% Similarity=0.052 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhcccC--C-c----hhHHHHHHHHHhcCCHHHHHHHHhhCCCC---------Ceeh
Q 042265 147 FVLNSLMHVYCVFHRLRDAQELFDEILYR--D-V----VSCNTLIDGYVKAGDLAHARQLFDRMPFR---------DAVS 210 (490)
Q Consensus 147 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~ 210 (490)
..+..+...+...|++++|...|+++.+. + . ..+..+...+...|++++|...+++.... ...+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455666777788888888888776432 1 1 24555555555566666665555443210 1234
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHH
Q 042265 211 WGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQ-IRVDSFLSTGLVDFYA 289 (490)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 289 (490)
+..+...|...|++++|...+++..+... +.+ .+....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHH
Confidence 44445555555555555555544433100 000 0112233444444555
Q ss_pred hcCC-----------------HHHHHHHHhccCC-------C--CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CC
Q 042265 290 KCGY-----------------INTAIEIFESSQE-------K--NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI-KP 342 (490)
Q Consensus 290 ~~~~-----------------~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p 342 (490)
..|+ +++|.+.+++..+ + ....+..+...+...|++++|...+++..+... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5555 5555544443321 0 123566666777777777777777777654210 01
Q ss_pred C----HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC----CchHHHHHHhhhhhcCCHHHHHHHHhhCCCC----C
Q 042265 343 D----GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSK----ELKHYGCMADLLGRAGLIEEALEMIKKMPMG----G 410 (490)
Q Consensus 343 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~ 410 (490)
+ ...+..+...+...|++++|...+++..+...... ...++..+...|...|++++|...+++.... +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 23667777788888888888888888766321111 1456777888888999999998888775421 1
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 411 ----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 411 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
...++..+...+...|++++|...+++++++.+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 3457788888999999999999999999987653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.9e-13 Score=123.99 Aligned_cols=227 Identities=11% Similarity=-0.055 Sum_probs=126.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC------CCChhhHH
Q 042265 214 LVAGYAQSDQCEEAIQLFCNMMDL----DIKP-DNIALVSALSACARLGELEQGKNIHRYIELNQI------RVDSFLST 282 (490)
Q Consensus 214 l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 282 (490)
....+...|++++|...|++..+. +-.+ ...++..+..++...|++++|...+.+..+... +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566677777777777776553 1111 223566666677777777777777766655311 11123455
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-----CC----eehHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQE-----KN----LFTWNAMLVGLAMHGLGRLSLVYFSRMIEA----RI-KPDGVTIL 348 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~~~~ 348 (490)
.+..+|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 566666666666666666655432 11 125556666666677777777766666551 22 22344566
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhh---CCCCCchHHHHHHhhhhhcCC---HHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 042265 349 GALVGCSHAGLVDEARKLFDEMESVY---GVSKELKHYGCMADLLGRAGL---IEEALEMIKKMPMGG-DVFVWSGLLGG 421 (490)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~~ 421 (490)
.+...+...|++++|...+++..+.. +.+.....+..+...|...|+ +++|+.++++....+ ....+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 66666777777777777776665421 111112223445555556666 556666666554332 23344455555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 042265 422 CRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~ 440 (490)
|...|++++|...++++++
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666555
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-11 Score=119.38 Aligned_cols=401 Identities=9% Similarity=-0.004 Sum_probs=278.5
Q ss_pred CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC---cHHHHHHHHHHHHhC-CCCchhH
Q 042265 73 YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCS---HSLAQTIHSQVLKLG-FICDVFV 148 (490)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~g-~~~~~~~ 148 (490)
+-|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.++ ++.+..+|+..+... .+|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 468899999999999999999999999999986 35556678888888888888 999999999998864 1488999
Q ss_pred HHHHHHHHHhcCCh--------HHHHHHHHhcc------cC-CchhHHHHHHHHH---------hcCCHHHHHHHHhhCC
Q 042265 149 LNSLMHVYCVFHRL--------RDAQELFDEIL------YR-DVVSCNTLIDGYV---------KAGDLAHARQLFDRMP 204 (490)
Q Consensus 149 ~~~li~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~ 204 (490)
|...+....+.++. +...++|+..+ .+ +...|...+.... ..++++.+.++|++..
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888877666554 33446777653 23 3457777776543 2345788899998866
Q ss_pred CCCe----ehH---HHHHHHH----------HhcCChhHHHHHHHHHHh--CCC----C-----------C-----C---
Q 042265 205 FRDA----VSW---GTLVAGY----------AQSDQCEEAIQLFCNMMD--LDI----K-----------P-----D--- 242 (490)
Q Consensus 205 ~~~~----~~~---~~l~~~~----------~~~g~~~~A~~~~~~m~~--~~~----~-----------p-----~--- 242 (490)
.-.. .+| ..+.... -...+++.|...+.++.. .++ + | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 3211 122 1221111 011223444455544321 111 1 1 1
Q ss_pred HHHHHHHHHHHHccC-------ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH-HHHhccCC--C-Ceeh
Q 042265 243 NIALVSALSACARLG-------ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAI-EIFESSQE--K-NLFT 311 (490)
Q Consensus 243 ~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~--~-~~~~ 311 (490)
...|...+..--..+ ..+.+..+|++++... +....+|...+..+...|+.++|. .+|++... | +...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 123333333222222 1234567788888764 668888999999899999999996 99987764 3 4456
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHhhccCcHHHHHHHHHHh
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEAR---------IKPD------------GVTILGALVGCSHAGLVDEARKLFDEM 370 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~---------~~p~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (490)
|-..+....+.|+++.|.++|+++.... -.|+ ...|...+....+.|+.+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777888889999999999999987631 0132 235777777777889999999999999
Q ss_pred HHhhCCCCCchHHHHHHhhhhhc-CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---
Q 042265 371 ESVYGVSKELKHYGCMADLLGRA-GLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE--- 444 (490)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--- 444 (490)
.+. ........|...+..-.+. ++.+.|.++|+... ..| +...|...+......|+.+.|..+|+++++..|+
T Consensus 461 ~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 873 1222344454444433344 45899999998754 223 7777888888888899999999999999997773
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 445 DGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 445 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
....|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44578888888889999999999999998764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-11 Score=111.74 Aligned_cols=219 Identities=9% Similarity=-0.023 Sum_probs=155.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------ccCCh-------HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042265 225 EEAIQLFCNMMDLDIKPDNIALVSALSACA-------RLGEL-------EQGKNIHRYIELNQIRVDSFLSTGLVDFYAK 290 (490)
Q Consensus 225 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 290 (490)
++|...|++++... +-+...|..++..+. ..|+. ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777776642 334555655555554 34665 7778888877763114455677777777888
Q ss_pred cCCHHHHHHHHhccCC--C-Cee-hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-hccCcHHHHHH
Q 042265 291 CGYINTAIEIFESSQE--K-NLF-TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGC-SHAGLVDEARK 365 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~~~~a~~ 365 (490)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888877654 2 233 677788888888888888888888887532 2344444333222 23688999999
Q ss_pred HHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC----CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042265 366 LFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM----GG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVM 439 (490)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 439 (490)
+|++..+. .+.+...+..++..+.+.|++++|..+|++... .| ....|..++..+.+.|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99988874 345677788888888888999999999887653 22 56788888888888999999999999999
Q ss_pred hhCCCCCc
Q 042265 440 KLKPEDGG 447 (490)
Q Consensus 440 ~~~p~~~~ 447 (490)
+..|++..
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 98887653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=124.38 Aligned_cols=165 Identities=17% Similarity=0.103 Sum_probs=107.7
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc------C-
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDL-------DIKPDNIALVSALSACARLGELEQGKNIHRYIELN------Q- 273 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 273 (490)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456778888888889999999888888762 22234456778888888899999999888887764 1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC-------C----CeehHHHHHHHHHHcCChHHHHHHHHHHHHC----
Q 042265 274 IRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE-------K----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA---- 338 (490)
Q Consensus 274 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---- 338 (490)
.+....++..+...|...|++++|...++++.+ + ....+..+...+...|++++|++.++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 123355667777777788888887777765442 1 1234555566666666666666666665543
Q ss_pred --CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 339 --RIKP-DGVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 339 --~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
+..| ...++..+...+...|++++|...++++.+
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112 123455555566666666666666666654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-12 Score=118.69 Aligned_cols=275 Identities=13% Similarity=0.027 Sum_probs=139.9
Q ss_pred HHHHHHhccCCcHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcC
Q 042265 116 FLLRACSQLCSHSLAQTIHSQVLKLGFICD----VFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAG 191 (490)
Q Consensus 116 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (490)
.....+...|++++|...++++.+.. +.+ ...+..+...+...|++++|.+.+++.... ..+.+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----------~~~~~ 77 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL-----------ARTIG 77 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHHHT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------hhccc
Confidence 34455666677777777777777654 223 345666677777777777777776664211 00000
Q ss_pred CHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------
Q 042265 192 DLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDI-KPD----NIALVSALSACARLGE-------- 258 (490)
Q Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~-------- 258 (490)
+... ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 78 ~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (338)
T 3ro2_A 78 DQLG-----------EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146 (338)
T ss_dssp CHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC
T ss_pred ccHH-----------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhh
Confidence 0000 123344555556666666666666655443210 011 2244555555555565
Q ss_pred ------------hHHHHHHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHH
Q 042265 259 ------------LEQGKNIHRYIELN----QI-RVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAM 321 (490)
Q Consensus 259 ------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 321 (490)
+++|...+++..+. +. +....++..+...+...|+++
T Consensus 147 ~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------------- 200 (338)
T 3ro2_A 147 DTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR-------------------------- 200 (338)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH--------------------------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHH--------------------------
Confidence 55555555444322 10 011123333344444444444
Q ss_pred cCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhh
Q 042265 322 HGLGRLSLVYFSRMIEA----RI-KPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGR 392 (490)
Q Consensus 322 ~~~~~~A~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 392 (490)
+|...+++..+. +. .....++..+...+...|++++|...+++..+......+ ..++..+...+..
T Consensus 201 -----~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 201 -----DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 444444433321 00 001124455555555666666666666655442111111 3345556666666
Q ss_pred cCCHHHHHHHHhhCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 393 AGLIEEALEMIKKMPM----GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 393 ~g~~~~A~~~~~~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
.|++++|...+++... .+ ...++..+...+...|++++|...+++++++.+.
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6777666666655421 11 2446677778888888888888888888876553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-12 Score=107.91 Aligned_cols=167 Identities=10% Similarity=-0.015 Sum_probs=122.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042265 277 DSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVG 353 (490)
Q Consensus 277 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 353 (490)
++.+|..+...|.+.|++++|++.|++..+ .++.++..+...+...|++++|...+........ .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 344555556666666666666666655442 2445666666777777777777777777766532 245566666677
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIA 431 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 431 (490)
+...++++.|...+.+..+ ..+.+...+..+...|.+.|++++|++.|++.. ..| +..++..++.++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7788888888888888877 445567778888888888899999988888754 234 788899999999999999999
Q ss_pred HHHHHHHHhhCCCCC
Q 042265 432 EAAAEHVMKLKPEDG 446 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~ 446 (490)
++.++++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999988754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-10 Score=109.13 Aligned_cols=161 Identities=15% Similarity=0.041 Sum_probs=71.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHH----
Q 042265 313 NAMLVGLAMHGLGRLSLVYFSRMIEARIK--P--DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYG---- 384 (490)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~--p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---- 384 (490)
..+...+...|++++|...+++....... + ...++..+...+...|++++|...+++.............+.
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 33444455555555555555554432111 0 123344444455555555555555555543211111111111
Q ss_pred -HHHhhhhhcCCHHHHHHHHhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHHH
Q 042265 385 -CMADLLGRAGLIEEALEMIKKMPMGG------DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED------GGVYKV 451 (490)
Q Consensus 385 -~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~ 451 (490)
..+..+...|++++|...+++..... ....+..+...+...|++++|...++++.+..+.. ..++..
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 11222445555555555555543211 12233444555555556666665555555422110 123444
Q ss_pred HHHHHHhcCChHHHHHHHHHHh
Q 042265 452 LADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 452 l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
++.++...|+.++|...+++..
T Consensus 299 la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 5555555566655555555443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-12 Score=129.25 Aligned_cols=163 Identities=17% Similarity=0.105 Sum_probs=138.5
Q ss_pred eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 309 LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
..+|+.+...+.+.|++++|++.|++.++... -+...+..+..++.+.|++++|++.|+++.+. .+.+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45677788888888888888888888877532 24677888888888899999999999988873 4456778888999
Q ss_pred hhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHH
Q 042265 389 LLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
+|...|++++|++.|++.. ..| +...+..+...+...|++++|+..|+++++++|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 9999999999999998754 334 88899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 042265 467 KIRRSLDA 474 (490)
Q Consensus 467 ~~~~~m~~ 474 (490)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-11 Score=109.57 Aligned_cols=212 Identities=11% Similarity=0.018 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCH-------HHHHHHHhccCC---C-CeehHHHHHHHHHH
Q 042265 260 EQGKNIHRYIELNQIRVDSFLSTGLVDFYAK-------CGYI-------NTAIEIFESSQE---K-NLFTWNAMLVGLAM 321 (490)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 321 (490)
++|..+|+++.+.. +.++..|..++..+.. .|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999988875 6778888888887763 5886 899999998765 3 45589999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhh-hcCCHHH
Q 042265 322 HGLGRLSLVYFSRMIEARIKPD-GV-TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLG-RAGLIEE 398 (490)
Q Consensus 322 ~~~~~~A~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 398 (490)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+++.+ ..+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 454 33 788888999999999999999999997 33455555554443322 3699999
Q ss_pred HHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-CCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 399 ALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL---KPE-DGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 399 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
|.++|++.. ..| +...|..++..+.+.|++++|..+|+++++. .|+ ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999998864 223 7899999999999999999999999999995 443 5568888999999999999999999998
Q ss_pred hcCC
Q 042265 473 DAGK 476 (490)
Q Consensus 473 ~~~~ 476 (490)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-11 Score=112.79 Aligned_cols=227 Identities=11% Similarity=-0.028 Sum_probs=131.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-----C-CChhhH
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDI-KPD----NIALVSALSACARLGELEQGKNIHRYIELNQI-----R-VDSFLS 281 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~ 281 (490)
.....+...|++++|+..|++..+... .++ ...+..+..++...|+++.|...+.+..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344455667777777777776654311 112 23556666667777777777777766654310 0 113345
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC-----CC----eehHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 042265 282 TGLVDFYAKCGYINTAIEIFESSQE-----KN----LFTWNAMLVGLAMHGLGRLSLVYFSRMIE-----ARIKPDGVTI 347 (490)
Q Consensus 282 ~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~~p~~~~~ 347 (490)
..+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+ .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 5666666666666666666655432 11 23455666666777777777777766655 32 1224566
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC---chHHHHHHhhhhhcCC---HHHHHHHHhhCCCCC-CHHHHHHHHH
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMESVYGVSKE---LKHYGCMADLLGRAGL---IEEALEMIKKMPMGG-DVFVWSGLLG 420 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~l~~ 420 (490)
..+...+.+.|++++|...+++..+......+ ...+..+...+...|+ +++|+..+++....+ ....+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 66677777777777777777777664221111 2234445555556666 666666666644332 2334455666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 042265 421 GCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~ 440 (490)
.|...|++++|...++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.9e-12 Score=117.90 Aligned_cols=230 Identities=8% Similarity=-0.072 Sum_probs=120.4
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHh----CCCC-chhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcC
Q 042265 117 LLRACSQLCSHSLAQTIHSQVLKL----GFIC-DVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAG 191 (490)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (490)
....+...|++++|...+++..+. +-++ ...++..+..++...|++++|...+++..+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~----------------- 171 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE----------------- 171 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 334455667777777777766653 1111 234566666666667777766666655421
Q ss_pred CHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCChHHHH
Q 042265 192 DLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDL----DIKP-DNIALVSALSACARLGELEQGK 263 (490)
Q Consensus 192 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~ 263 (490)
++...... ...+++.+...|...|++++|.+.+++..+. +-.+ ...++..+..++...|++++|.
T Consensus 172 -------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 172 -------IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp -------HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 11111100 1234555555555556666665555554432 1000 1124555556666666666666
Q ss_pred HHHHHHHHc----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHhccCC-----CCe---ehHHHHHHHHHHcCC---hHH
Q 042265 264 NIHRYIELN----QI-RVDSFLSTGLVDFYAKCGYINTAIEIFESSQE-----KNL---FTWNAMLVGLAMHGL---GRL 327 (490)
Q Consensus 264 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~---~~~~~l~~~~~~~~~---~~~ 327 (490)
..+++..+. +. +....++..+..+|.+.|++++|...+++..+ .+. ..+..+...+...|+ .++
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 666555542 22 33344555566666666666666666655432 111 123445555566666 555
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 328 SLVYFSRMIEARIKP-DGVTILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 328 A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
|+.++++. +..| ....+..+...|...|++++|...+++..+.
T Consensus 325 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 325 FFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55555443 2222 2235556667777777777777777776653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.2e-12 Score=120.50 Aligned_cols=210 Identities=12% Similarity=0.014 Sum_probs=120.5
Q ss_pred chhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHH
Q 042265 92 PLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSH-SLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFD 170 (490)
Q Consensus 92 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 170 (490)
+++++..++...... +.+...+..+...+...|++ ++|.+.|++.++.. +.+...+..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555544332 23445566666666777777 77777777776664 4456667777777777777777777777
Q ss_pred hccc--CCchhHHHHHHHHHhc---------CCHHHHHHHHhhCC---CCCeehHHHHHHHHHhc--------CChhHHH
Q 042265 171 EILY--RDVVSCNTLIDGYVKA---------GDLAHARQLFDRMP---FRDAVSWGTLVAGYAQS--------DQCEEAI 228 (490)
Q Consensus 171 ~~~~--~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~--------g~~~~A~ 228 (490)
+..+ |+...+..+...+... |++++|++.|++.. ..+...|..+..+|... |++++|+
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 6633 3444555555555555 66666666665533 22445555566666555 5566666
Q ss_pred HHHHHHHhCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcc
Q 042265 229 QLFCNMMDLDIK--PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 229 ~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
+.|++..+.... -+...+..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+.++
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666665553210 244555555566666666666666666655554 334445555555555555555555554443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-11 Score=102.14 Aligned_cols=159 Identities=14% Similarity=0.078 Sum_probs=92.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 042265 280 LSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSH 356 (490)
Q Consensus 280 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 356 (490)
.+..+...+...|++++|...++++.+. +...+..+...+...|++++|...++++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------------ 71 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD------------------ 71 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Confidence 4445555566666666666666655432 2334444444555555555555555554443
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 357 AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP--MGGDVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
.+.+...+..+...+...|++++|.+.++++. ...+...+..++..+...|++++|...
T Consensus 72 -------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 72 -------------------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp -------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 22233344444444445555555555544432 112555666667777777777777777
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 435 AEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++++.+..|.++.++..++.++...|++++|.+.+++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 77777777777777777777777777777777777776544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=117.55 Aligned_cols=254 Identities=12% Similarity=0.049 Sum_probs=148.2
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCC---CC-CeehHHHHHHHHHh
Q 042265 145 DVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMP---FR-DAVSWGTLVAGYAQ 220 (490)
Q Consensus 145 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~-~~~~~~~l~~~~~~ 220 (490)
+..++..+...+...|++++|..+++++.+. +.... .+ ...++..+...|..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------------------~~~~~~~~~~~~~~~~~~la~~~~~ 81 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALED------------------------LEKTSGHDHPDVATMLNILALVYRD 81 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------HHHHHCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------------------HHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666654320 00000 00 23456667777777
Q ss_pred cCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCChhhHHHHHH
Q 042265 221 SDQCEEAIQLFCNMMDL------DIKP-DNIALVSALSACARLGELEQGKNIHRYIELN------QI-RVDSFLSTGLVD 286 (490)
Q Consensus 221 ~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~ 286 (490)
.|++++|...+++..+. +-.| ....+..+...+...|++++|...++++.+. +. +....++..+..
T Consensus 82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 77777777777776653 1122 3456778888888899999999888887764 21 234566788899
Q ss_pred HHHhcCCHHHHHHHHhccCC-------C----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 042265 287 FYAKCGYINTAIEIFESSQE-------K----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS 355 (490)
Q Consensus 287 ~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 355 (490)
.|...|++++|.+.++++.+ + ...++..+...+...|++++|...++++.+.. |+. .+..+-.
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~~--- 235 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVDD--- 235 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC-------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCCc---
Confidence 99999999999999887643 1 23467888899999999999999999987631 100 0000000
Q ss_pred ccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHH
Q 042265 356 HAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G-DVFVWSGLLGGCRIHGNVEIAEA 433 (490)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~ 433 (490)
....... ....+..+...+...+.+.++...++..... | ...++..+...|...|++++|..
T Consensus 236 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 299 (311)
T 3nf1_A 236 ENKPIWM----------------HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299 (311)
T ss_dssp --CCHHH----------------HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred chHHHHH----------------HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 0000000 0001111222233344445555555554432 2 55667777777888888888888
Q ss_pred HHHHHHhhCCC
Q 042265 434 AAEHVMKLKPE 444 (490)
Q Consensus 434 ~~~~~~~~~p~ 444 (490)
.+++++++.|.
T Consensus 300 ~~~~al~l~~~ 310 (311)
T 3nf1_A 300 LEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhhc
Confidence 88888776653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-11 Score=104.74 Aligned_cols=190 Identities=13% Similarity=-0.041 Sum_probs=96.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHhccCC----CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042265 277 DSFLSTGLVDFYAKCGYINTAIEIFESSQE----KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALV 352 (490)
Q Consensus 277 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 352 (490)
++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+.... +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 345555555566666666666666654432 33444444555555666666666666655554211 3344555555
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCc-------hHHHHHHhhhhhcCCHHHHHHHHhhCCC-CCC---HHHHHHHHHH
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKEL-------KHYGCMADLLGRAGLIEEALEMIKKMPM-GGD---VFVWSGLLGG 421 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~l~~~ 421 (490)
.+...|++++|...+++..+. .+.+. ..|..+...+...|++++|++.|++... .|+ ...+..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 555666666666666665552 22223 2344445555555555555555554332 222 2344444444
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+.. .+...++++..+.+.+...+.. ......+.+++|...+++..+..
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 432 2233344444444433322222 22233444599999999887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=8e-11 Score=101.77 Aligned_cols=206 Identities=11% Similarity=0.010 Sum_probs=160.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHH
Q 042265 241 PDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLV 317 (490)
Q Consensus 241 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~ 317 (490)
.|...+......+...|++++|...|++..+...+++...+..+..++...|++++|+..|++..+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567888899999999999999999999999874478888888999999999999999999987643 4567888999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC--CchHHHHHHh
Q 042265 318 GLAMHGLGRLSLVYFSRMIEARIKPDG-------VTILGALVGCSHAGLVDEARKLFDEMESVYGVSK--ELKHYGCMAD 388 (490)
Q Consensus 318 ~~~~~~~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 388 (490)
.+...|++++|+..+++..+... .+. ..|..+...+...|++++|...|+++.+ ..+. +...+..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 99999999999999999988532 234 4577777888899999999999999987 3333 4667778888
Q ss_pred hhhhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 042265 389 LLGRAGLIEEALEMIKKMPM--GGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (490)
+|...|+. .++++.. ..+...+.... ....+.+++|+..+++++++.|+++.+...+..+.
T Consensus 162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 88766543 2232221 11344443333 34456799999999999999999987777666543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-11 Score=113.61 Aligned_cols=303 Identities=10% Similarity=0.013 Sum_probs=156.2
Q ss_pred CchhHHHHHHHhh--ccCCcCCCCCCCCCChhHHHHhhccCCC--------CCcccHHHHHHH--HHcCCCchhHH----
Q 042265 33 PCHILTTILYAIT--TFKPISSASSPTTDPLSYALSIFNNIPY--------PSTFSYNTIIRA--HTLFSSPLNAV---- 96 (490)
Q Consensus 33 ~~~~~~~~l~~~~--~~~~~~~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~---- 96 (490)
|+..+.+.|-.+| . +.+++++|.++++++.. ++...|-.++.. ..-.+.+..+.
T Consensus 8 ~~~~v~~~l~~wy~~i----------~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~ 77 (378)
T 3q15_A 8 PSSRVGVKINEWYKMI----------RQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGN 77 (378)
T ss_dssp CHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC------
T ss_pred cHHHHHHHHHHHHHHH----------HHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCccccccc
Confidence 7889999999999 6 89999999999876531 223333333332 11112222222
Q ss_pred -----HHHHHhhhCCCCCCc-c---cHHHHHHHHhccCCcHHHHHHHHHHHHhCC-CC----chhHHHHHHHHHHhcCCh
Q 042265 97 -----VLFSQMRTVSIPPDF-Y---SFPFLLRACSQLCSHSLAQTIHSQVLKLGF-IC----DVFVLNSLMHVYCVFHRL 162 (490)
Q Consensus 97 -----~~~~~m~~~~~~p~~-~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~~~~~g~~ 162 (490)
+.++.+.....+.+. . .+......+...|++++|...+++..+... .+ ...++..+..+|...|++
T Consensus 78 ~~~~~~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~ 157 (378)
T 3q15_A 78 RPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQT 157 (378)
T ss_dssp --CHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCc
Confidence 444444322101010 0 112223344566777777777777665310 01 234556666667777777
Q ss_pred HHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhC--
Q 042265 163 RDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDL-- 237 (490)
Q Consensus 163 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-- 237 (490)
+.|...+++..+ ++...... ...+++.+..+|...|++++|.+.|++..+.
T Consensus 158 ~~A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 213 (378)
T 3q15_A 158 HVSMYHILQALD------------------------IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAM 213 (378)
T ss_dssp HHHHHHHHHHHH------------------------HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH------------------------HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 777666655421 11111110 1234455555556666666666555554431
Q ss_pred --CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC----
Q 042265 238 --DIKP-DNIALVSALSACARLGELEQGKNIHRYIELN----QIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---- 306 (490)
Q Consensus 238 --~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---- 306 (490)
+..+ ...++..+..++...|++++|...+++..+. +.+....++..+..+|.+.|++++|...+++..+
T Consensus 214 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 214 DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 1111 1224555566666666666666666665541 2123345555666666666666666666654331
Q ss_pred -CCe---ehHHHHHHHHHHcCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 307 -KNL---FTWNAMLVGLAMHGL---GRLSLVYFSRMIEARIKPD-GVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 307 -~~~---~~~~~l~~~~~~~~~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
.+. ..+..+...+...++ ..+|+..+++ .+..|+ ...+..+...|...|++++|...|++..+
T Consensus 294 ~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 294 RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 123334444445555 5555555544 222222 23445566677777777777777777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=7.6e-11 Score=97.94 Aligned_cols=168 Identities=15% Similarity=0.062 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHH
Q 042265 243 NIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGL 319 (490)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 319 (490)
...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+ .+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3467778888999999999999999987764 56788899999999999999999999987653 3556677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHH
Q 042265 320 AMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEA 399 (490)
Q Consensus 320 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 399 (490)
...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+. .+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~---------------------- 141 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RP---------------------- 141 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT----------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--Cc----------------------
Confidence 77788888877777776642 234555566666666666666666666666552 11
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 400 LEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.+...+..++..+...|++++|...++++++..|++.
T Consensus 142 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 142 ----------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred ----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 1455566677777777888888888888877777665
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-09 Score=100.04 Aligned_cols=267 Identities=12% Similarity=0.023 Sum_probs=156.5
Q ss_pred HHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc-----cHHHHHHHHhccCCcHHHHHHHHHHHHhCC-CCc----hhHHH
Q 042265 81 TIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY-----SFPFLLRACSQLCSHSLAQTIHSQVLKLGF-ICD----VFVLN 150 (490)
Q Consensus 81 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~ 150 (490)
.....+...|++++|...+++..... +++.. .+..+...+...|+++.|...+++..+... .++ ..++.
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 34445667888888888888877653 22211 344555666777888888888877665310 111 12245
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CeehHHHHHHHHHhcCChhH
Q 042265 151 SLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR----DAVSWGTLVAGYAQSDQCEE 226 (490)
Q Consensus 151 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~ 226 (490)
.+...+...|++++|...+++... +......+ ....+..+...+...|++++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 153 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQ------------------------LINEQHLEQLPMHEFLVRIRAQLLWAWARLDE 153 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH------------------------HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH------------------------HHHHhccccCcHHHHHHHHHHHHHHHhcCHHH
Confidence 556666677777777766655421 11111111 12345566777778888888
Q ss_pred HHHHHHHHHhCCCC--C--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHHhcCCHHH
Q 042265 227 AIQLFCNMMDLDIK--P--DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDS-FLST-----GLVDFYAKCGYINT 296 (490)
Q Consensus 227 A~~~~~~m~~~~~~--p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~ 296 (490)
|...+++..+.... + ....+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++
T Consensus 154 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 154 AEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 88888776653211 1 2345667777788888888888888877654212111 1111 23344667888888
Q ss_pred HHHHHhccCCCCe-------ehHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCcHHHHH
Q 042265 297 AIEIFESSQEKNL-------FTWNAMLVGLAMHGLGRLSLVYFSRMIEA----RIKPDG-VTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 297 A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~~~~g~~~~a~ 364 (490)
|...+++...+.. ..+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|.
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 313 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ 313 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence 8888877765321 13445566677777777777777766432 111111 14444455566667777777
Q ss_pred HHHHHhHH
Q 042265 365 KLFDEMES 372 (490)
Q Consensus 365 ~~~~~~~~ 372 (490)
..+++...
T Consensus 314 ~~l~~al~ 321 (373)
T 1hz4_A 314 RVLLDALK 321 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-10 Score=103.66 Aligned_cols=198 Identities=13% Similarity=0.115 Sum_probs=129.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCC-------C----CeehHHHHHHHHHHcCChHHHHHHHHHHHHC------CC
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQE-------K----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA------RI 340 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~ 340 (490)
..++..+...|...|++++|...++++.+ + ...++..+...+...|++++|...+++.... .-
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 34455555555566666666555554331 1 2346788888999999999999999988764 11
Q ss_pred -CCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh-----C-CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-----
Q 042265 341 -KPDGVTILGALVGCSHAGLVDEARKLFDEMESVY-----G-VSKELKHYGCMADLLGRAGLIEEALEMIKKMPM----- 408 (490)
Q Consensus 341 -~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 408 (490)
+....++..+...+...|++++|...++++.+.. . .+....++..+...|...|++++|...+++...
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2235677788888999999999999999987631 1 222356778888999999999999998876531
Q ss_pred -----CC-CHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 409 -----GG-DVFVWSGLLGGCRIHG------NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 409 -----~~-~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.+ ....+..+.......+ .+..+...++......|....++..++.+|...|++++|..++++..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 2233333333333322 2333444444333344555668889999999999999999999988653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-10 Score=102.88 Aligned_cols=162 Identities=12% Similarity=-0.037 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHhhcc-CcHHHHHHHHHHhHHhhCCCCC----c
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARI---KP--DGVTILGALVGCSHA-GLVDEARKLFDEMESVYGVSKE----L 380 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~ 380 (490)
+|+.+..+|...|++++|+..+++..+... .+ ...++..+...|... |++++|...|++..+......+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344445555555555555555554433110 00 023555666666664 7777777777776653111111 2
Q ss_pred hHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC---CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch---
Q 042265 381 KHYGCMADLLGRAGLIEEALEMIKKMPM-GG---DV-----FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV--- 448 (490)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--- 448 (490)
.++..+...+.+.|++++|+..|++... .| .. ..+..++.++...|++++|+..++++++++|.....
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 3566677777777777777777776431 11 11 256666777777888888888888888877765432
Q ss_pred --HHHHHHHHH--hcCChHHHHHHHHHH
Q 042265 449 --YKVLADVYA--NADRWEDVVKIRRSL 472 (490)
Q Consensus 449 --~~~l~~~~~--~~g~~~~A~~~~~~m 472 (490)
+..++.++. ..+++++|+..|+++
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 334555554 345677777777654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-10 Score=113.78 Aligned_cols=162 Identities=9% Similarity=-0.045 Sum_probs=106.6
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
..+|+.|..+|.+.|++++|++.|++.++.. +-+...+..+..++.+.|++++|...|+++.+.. +.+...+..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4456666777777777777777777666642 2234566666677777777777777777766664 4456666677777
Q ss_pred HHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
|.+.|++++|++.|++..+ .+...|+.+..+|...|++++|++.|++..+... -+...+..+...+...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhcccHHHHH
Confidence 7777777777777766543 2455677777777777777777777777766421 14556667777777777777777
Q ss_pred HHHHHhHH
Q 042265 365 KLFDEMES 372 (490)
Q Consensus 365 ~~~~~~~~ 372 (490)
+.++++.+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.18 E-value=6.1e-10 Score=99.33 Aligned_cols=197 Identities=14% Similarity=0.041 Sum_probs=109.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHc------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHhccCC-------C---
Q 042265 245 ALVSALSACARLGELEQGKNIHRYIELN------QI-RVDSFLSTGLVDFYAKCGYINTAIEIFESSQE-------K--- 307 (490)
Q Consensus 245 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--- 307 (490)
.+..+..++...|++++|...++++.+. +- +....++..+..+|...|++++|...|++..+ +
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 4444455555555555555555544433 11 12233445555555555555555555544331 1
Q ss_pred -CeehHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh-----
Q 042265 308 -NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA------RIKP-DGVTILGALVGCSHAGLVDEARKLFDEMESVY----- 374 (490)
Q Consensus 308 -~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 374 (490)
...++..+...+...|++++|...++++.+. +-.| ...++..+...+...|++++|...++++.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 1235566666777777777777777776553 1122 24567778888888899999998888877631
Q ss_pred -CCCC-CchHHHHHHhhhhh------cCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 042265 375 -GVSK-ELKHYGCMADLLGR------AGLIEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKL 441 (490)
Q Consensus 375 -~~~~-~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 441 (490)
...+ ....+..+...+.. ...+.++...++...... ...++..+...|...|++++|...++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 22333333333332 233455555555554332 5667888999999999999999999998874
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-09 Score=93.99 Aligned_cols=238 Identities=10% Similarity=-0.019 Sum_probs=150.2
Q ss_pred hcCCHHHHHHHHhhCCCCCee-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 042265 189 KAGDLAHARQLFDRMPFRDAV-SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHR 267 (490)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 267 (490)
-.|.+..++.-..++...+.. .-.-+.++|...|++... ..-.|....+..+...+ ..+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHH
Confidence 345555555544444322222 222234666666665531 11223333333333332 222 556666
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC-----CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 042265 268 YIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK-----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKP 342 (490)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p 342 (490)
+..+.+ +++......+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 665554 444555557777788888888888888776432 3446667788888999999999999998774 55
Q ss_pred -----CHHHHHHHHHHh--hccC--cHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-----
Q 042265 343 -----DGVTILGALVGC--SHAG--LVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM----- 408 (490)
Q Consensus 343 -----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----- 408 (490)
+..+...+..++ ...| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 355666666662 2234 899999999998763 34422333444478889999999999876543
Q ss_pred ------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 042265 409 ------GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV 448 (490)
Q Consensus 409 ------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 448 (490)
.| ++.++..++......|+ +|.++++++.+..|+++.+
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 13 77777677777667787 8899999999999999833
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=6.3e-10 Score=100.06 Aligned_cols=218 Identities=9% Similarity=-0.064 Sum_probs=130.5
Q ss_pred CHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCChHHHHHHH
Q 042265 192 DLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDL----DIKPD-NIALVSALSACARLGELEQGKNIH 266 (490)
Q Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 266 (490)
++++|...|++. +..|...|++++|.+.|.+..+. |-+++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367776665543 66677778888888777776542 21111 346666777777777777777776
Q ss_pred HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC-CC-
Q 042265 267 RYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMH-GLGRLSLVYFSRMIEARIK-PD- 343 (490)
Q Consensus 267 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~~~~-p~- 343 (490)
++..+. +...|+...+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 665543 1112222221 12355566666664 7777777777766542110 01
Q ss_pred ---HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCch-----HHHHHHhhhhhcCCHHHHHHHHhhCCC-CCC---
Q 042265 344 ---GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELK-----HYGCMADLLGRAGLIEEALEMIKKMPM-GGD--- 411 (490)
Q Consensus 344 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--- 411 (490)
..++..+...+...|++++|...|+++.+.....+... .+..+..++...|++++|...+++... .|+
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 24566777778888888888888888776411112211 456677777788888888888877543 231
Q ss_pred ---HHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCC
Q 042265 412 ---VFVWSGLLGGCR--IHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 412 ---~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...+..++.++. ..+++++|+..|+++.+++|...
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 123444555554 45678888888877777777544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-09 Score=92.63 Aligned_cols=184 Identities=9% Similarity=-0.007 Sum_probs=121.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCC--CC----eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHH
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQE--KN----LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDG--VTILG 349 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~ 349 (490)
...+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|+++.+....... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455567778888888888888887663 32 235667777888888888888888888775322111 13333
Q ss_pred HHHHhhc------------------cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCC
Q 042265 350 ALVGCSH------------------AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGD 411 (490)
Q Consensus 350 l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (490)
+..++.. .|++++|...|+++.+ ..|.+............ .... .
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~----~~~~-----------~ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVF----LKDR-----------L 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHH----HHHH-----------H
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHH----HHHH-----------H
Confidence 3444432 4567777777777765 23333333222111100 0000 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC---chHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 042265 412 VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG---GVYKVLADVYANADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 478 (490)
......+...+.+.|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 01123456778899999999999999999999876 56889999999999999999999998876543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=85.38 Aligned_cols=126 Identities=13% Similarity=0.176 Sum_probs=79.4
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhc
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP--MGGDVFVWSGLLGGCRIH 425 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 425 (490)
..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|...++++. ...+...+..++..+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444444555555555555555442 22334444455555555555555555555432 112555666677777788
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 426 GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|++++|...++++.+..|.++.++..++.++.+.|++++|...++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888888888888877777777778888888888888888888777654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.9e-09 Score=89.87 Aligned_cols=162 Identities=9% Similarity=-0.086 Sum_probs=131.1
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC----cHHHHHHHHHHhHHhhCCCCCchH
Q 042265 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAG----LVDEARKLFDEMESVYGVSKELKH 382 (490)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~ 382 (490)
.++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|++..+. .++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 355666677777777888888888888888765 55667777777777 6 899999999998774 35666
Q ss_pred HHHHHhhhhh----cCCHHHHHHHHhhCCCCCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 383 YGCMADLLGR----AGLIEEALEMIKKMPMGGD----VFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 383 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
+..|...|.. .+++++|.++|++....++ +..+..|...|.. .+++++|+.+++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 7778888876 7899999999998776665 8889999999988 88999999999999988 66677899
Q ss_pred HHHHHHHhc-C-----ChHHHHHHHHHHhcCCC
Q 042265 451 VLADVYANA-D-----RWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 451 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 477 (490)
.|+.+|... | ++++|...+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999999887764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.1e-10 Score=98.42 Aligned_cols=181 Identities=12% Similarity=-0.017 Sum_probs=98.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--C-C---eehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHHHHHH
Q 042265 281 STGLVDFYAKCGYINTAIEIFESSQE--K-N---LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI-KPD-GVTILGALV 352 (490)
Q Consensus 281 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~-~~~~~~l~~ 352 (490)
+..+...+.+.|++++|...|+++.+ | + ...+..+..++...|++++|+..|++..+... .|. ...+..+..
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 33334444444444444444444332 1 1 22344444455555555555555555554321 111 223334444
Q ss_pred Hhhc--------cCcHHHHHHHHHHhHHhhCCCCCchHH-----------------HHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 353 GCSH--------AGLVDEARKLFDEMESVYGVSKELKHY-----------------GCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 353 ~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
++.. .|++++|...|+++.+. .+.+.... ..+...|.+.|++++|+..|+++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4444 55666666666665553 12222222 456777888888888888887753
Q ss_pred -CCC----CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCCc---hHHHHHHHHHhcCChH
Q 042265 408 -MGG----DVFVWSGLLGGCRIH----------GNVEIAEAAAEHVMKLKPEDGG---VYKVLADVYANADRWE 463 (490)
Q Consensus 408 -~~~----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~ 463 (490)
..| ....+..++.+|... |++++|+..++++++..|+++. +...+...+.+.|+++
T Consensus 176 ~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 176 DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 222 345677777777755 8889999999999999998863 3334444444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=115.88 Aligned_cols=145 Identities=15% Similarity=-0.059 Sum_probs=68.7
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
..+..+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+ -.+.+...+..+..+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAAT 510 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHH
Confidence 344444444555555555555555544432 11334444444445555555555555555544 223334444445555
Q ss_pred hhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 390 LGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
|.+.|++++ .+.|++.. ..| +...+..+..++.+.|++++|+..++++++.+|++..++..++.++..
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 555555555 54444432 122 444555555555555555555555555555555554455555555444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=8.9e-09 Score=90.92 Aligned_cols=240 Identities=13% Similarity=0.008 Sum_probs=167.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYI 294 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (490)
++-..-.|++..++.-..++. ..........+.+++...|+.+.. ..-.|....+..+.. |...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc--
Confidence 445566799988887433321 122233444556778777776531 111233333443333 33333
Q ss_pred HHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccCcHHHHHHHHHHh
Q 042265 295 NTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI-KPDGVTILGALVGCSHAGLVDEARKLFDEM 370 (490)
Q Consensus 295 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (490)
|+..|++..+ ++..++..+..++...|++++|++++.+.+..+. .-+...+..+++.+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776653 4455666788889999999999999999877654 235667888899999999999999999999
Q ss_pred HHhhCCCC-----CchHHHHHHhh--hhh--cCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 371 ESVYGVSK-----ELKHYGCMADL--LGR--AGLIEEALEMIKKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 371 ~~~~~~~~-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.+. .| +..+...++.+ ... .+++++|..+|+++...+ +..+...+..++...|++++|++.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 874 34 24455555555 333 349999999999987554 433444455589999999999999998877
Q ss_pred h----------CCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 441 L----------KPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 441 ~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
. +|+++.++..++......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5 58899898788777777887 8899999987764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.3e-11 Score=94.48 Aligned_cols=140 Identities=11% Similarity=-0.047 Sum_probs=95.5
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCH
Q 042265 318 GLAMHGLGRLSLVYFSRMIEARIKPD-GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLI 396 (490)
Q Consensus 318 ~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (490)
.+...|++++|+..++..... .|+ ...+..+...|.+.|++++|.+.|+++.+ -.+.+...|..+..+|...|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 344456666666666665432 222 23344566667777777777777777776 3445666777777777777777
Q ss_pred HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 397 EEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEA-AAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 397 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
++|...|++.. ..| ++..+..+...+.+.|++++|.+ +++++++++|+++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777643 234 67788888888888888876555 4588888888888888888888777764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.09 E-value=7.8e-08 Score=92.66 Aligned_cols=370 Identities=9% Similarity=-0.068 Sum_probs=211.8
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC--CCCcccHHHHHHHHHcCCC-chhHHHHHHHhhhC-CCC
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP--YPSTFSYNTIIRAHTLFSS-PLNAVVLFSQMRTV-SIP 108 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-~~~ 108 (490)
.-..+|...+..+- .|+++.|..+|++.. .|++..|...+....+.++ .+....+|+..... |..
T Consensus 13 ~aR~vyer~l~~~P-----------~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d 81 (493)
T 2uy1_A 13 SPSAIMEHARRLYM-----------SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY 81 (493)
T ss_dssp CHHHHHHHHHHHHH-----------TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHCC-----------CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC
Confidence 45567777777777 377888888887643 3677778777777666653 35566777766653 322
Q ss_pred C-CcccHHHHHHHHh----ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHH
Q 042265 109 P-DFYSFPFLLRACS----QLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTL 183 (490)
Q Consensus 109 p-~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 183 (490)
| +...|...+..+. ..++.+.+..+|+..+......-...|......-. ......+..++.+... .|..
T Consensus 82 ~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~-~~~~~~~~~~~~~~~~----~y~~- 155 (493)
T 2uy1_A 82 WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFEL-ELNKITGKKIVGDTLP----IFQS- 155 (493)
T ss_dssp TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH-HHCHHHHHHHHHHHHH----HHHH-
T ss_pred cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHH-HhccccHHHHHHHHhH----HHHH-
Confidence 2 3445555555443 23566777778887776321111222322222111 1112222222222110 0000
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcC--C-----hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 042265 184 IDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSD--Q-----CEEAIQLFCNMMDLDIKPDNIALVSALSACARL 256 (490)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 256 (490)
+ ...++++..++.. .+...|...+.--...+ - .+.+..+|++++... +.+...|...+..+.+.
T Consensus 156 --a---r~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 156 --S---FQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp --H---HHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred --H---HHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 0 0001222222221 12234544444322211 1 345677888877753 44566777777777888
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH-HHHHhccC--C-------C---CeehHHHHHHHHHHcC
Q 042265 257 GELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTA-IEIFESSQ--E-------K---NLFTWNAMLVGLAMHG 323 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~--~-------~---~~~~~~~l~~~~~~~~ 323 (490)
|+.+.|..++++.... |.+...+.. |....+.++. ..+.+... . + ....|...+....+.+
T Consensus 227 ~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp TCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence 9999999999998887 444433332 2222111111 11222111 0 0 1235666666666788
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHH
Q 042265 324 LGRLSLVYFSRMIEARIKPDGVTILGALVGCSH-AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEM 402 (490)
Q Consensus 324 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (490)
+.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.+ +.++..+...++.....|+.+.|..+
T Consensus 301 ~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l 376 (493)
T 2uy1_A 301 GLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARAL 376 (493)
T ss_dssp CHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 899999999998 32 12344444432222122 346999999999999853 33445566678888889999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 403 IKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 403 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
|+++.. ....|...+..-...|+.+.+..+++++.+
T Consensus 377 ~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 377 FKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999842 678888888888889999999999999886
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-09 Score=96.04 Aligned_cols=169 Identities=11% Similarity=-0.041 Sum_probs=135.8
Q ss_pred CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCC-CchH
Q 042265 307 KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD---GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSK-ELKH 382 (490)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ 382 (490)
.+...+..+...+...|++++|+..|+++.+.... + ...+..+..++...|++++|...|+++.+.+...| ....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35566777888899999999999999999886322 2 56778888899999999999999999998532222 2456
Q ss_pred HHHHHhhhhh--------cCCHHHHHHHHhhCC-CCC-CHHHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 042265 383 YGCMADLLGR--------AGLIEEALEMIKKMP-MGG-DVFVW-----------------SGLLGGCRIHGNVEIAEAAA 435 (490)
Q Consensus 383 ~~~l~~~~~~--------~g~~~~A~~~~~~~~-~~~-~~~~~-----------------~~l~~~~~~~~~~~~a~~~~ 435 (490)
+..+..++.. .|++++|...|+++. ..| +.... ..+...+...|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7778888888 999999999998864 223 22222 56678899999999999999
Q ss_pred HHHHhhCCCCC---chHHHHHHHHHhc----------CChHHHHHHHHHHhcCC
Q 042265 436 EHVMKLKPEDG---GVYKVLADVYANA----------DRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 436 ~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~ 476 (490)
+++++..|+++ .++..++.+|... |++++|...++++.+..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 99999999854 4788999999877 89999999999987653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-09 Score=96.68 Aligned_cols=175 Identities=8% Similarity=-0.049 Sum_probs=136.9
Q ss_pred HHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh
Q 042265 295 NTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVY 374 (490)
Q Consensus 295 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (490)
+.....+......+...+..+...+...|++++|...|++..+... -+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 3344444444444555666777888899999999999999887632 25677888888999999999999999998764
Q ss_pred CCCCCchHH-HHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CchH
Q 042265 375 GVSKELKHY-GCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED--GGVY 449 (490)
Q Consensus 375 ~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~ 449 (490)
.|+.... ......+...++.++|.+.+++.. ..| +...+..+...+...|++++|+..++++++.+|++ ..++
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 2343322 223334667788888888887754 344 88999999999999999999999999999999988 7789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 042265 450 KVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
..++.++...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999999988754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.9e-09 Score=82.19 Aligned_cols=131 Identities=15% Similarity=0.187 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46667778888888888888888887753 235667777888888889999999999988873 345666778888888
Q ss_pred hhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 391 GRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
...|++++|.+.++++.. .| +...+..++..+...|++++|...++++++..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999998887542 22 6788888999999999999999999999998875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.9e-10 Score=90.18 Aligned_cols=124 Identities=12% Similarity=-0.054 Sum_probs=103.3
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC
Q 042265 350 ALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGN 427 (490)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 427 (490)
|...+...|++++|+..++.... ..+.+...+..+...|.+.|++++|++.|++.. ..| ++.+|..+...+...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 44556778999999999998875 333345566779999999999999999999864 344 89999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHH-HHHHhcC
Q 042265 428 VEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKI-RRSLDAG 475 (490)
Q Consensus 428 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 475 (490)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887765 5776553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.4e-09 Score=105.00 Aligned_cols=160 Identities=10% Similarity=0.011 Sum_probs=123.7
Q ss_pred cCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 291 CGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
.|++++|.+.|++..+. +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999987753 45678889999999999999999999998864 235778888999999999999999999
Q ss_pred HHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhC
Q 042265 368 DEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH---GNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 442 (490)
++..+. .+.+...+..+..+|.+.|++++|.+.+++.. ..| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999883 45567888999999999999999999998854 233 788899999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 042265 443 PEDGGVYKVLA 453 (490)
Q Consensus 443 p~~~~~~~~l~ 453 (490)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887776
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=88.50 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=95.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh-hhhc
Q 042265 315 MLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL-LGRA 393 (490)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 393 (490)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+. . |++..+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~-p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--Y-QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--G-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--c-CChHHHHHHHHHHHHhh
Confidence 3444445555555555555443321 113344555555555555555555555555442 1 122222111111 1111
Q ss_pred CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--CchHHHHHHHHHhcCChHHHHHHH
Q 042265 394 GLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED--GGVYKVLADVYANADRWEDVVKIR 469 (490)
Q Consensus 394 g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 469 (490)
+...+|...+++.. ..| +...+..+...+...|++++|+..++++++.+|+. +.++..++.++...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 22223555565533 234 78888999999999999999999999999999875 458999999999999999999999
Q ss_pred HHHh
Q 042265 470 RSLD 473 (490)
Q Consensus 470 ~~m~ 473 (490)
++..
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.97 E-value=7.6e-09 Score=93.71 Aligned_cols=218 Identities=11% Similarity=0.046 Sum_probs=135.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 042265 221 SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACAR-LGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIE 299 (490)
Q Consensus 221 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 299 (490)
.|++++|.+++++..+... .. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4566677777766554211 00 111 35555555555443 234555566666665
Q ss_pred HHhccCCC-----C----eehHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhccCcHHHHHH
Q 042265 300 IFESSQEK-----N----LFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR---IKPD--GVTILGALVGCSHAGLVDEARK 365 (490)
Q Consensus 300 ~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---~~p~--~~~~~~l~~~~~~~g~~~~a~~ 365 (490)
.|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 55543321 1 2356667777778888888888887765421 1111 3466777777877 99999999
Q ss_pred HHHHhHHhhCCCC----CchHHHHHHhhhhhcCCHHHHHHHHhhCCC----CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 042265 366 LFDEMESVYGVSK----ELKHYGCMADLLGRAGLIEEALEMIKKMPM----GGD----VFVWSGLLGGCRIHGNVEIAEA 433 (490)
Q Consensus 366 ~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~~l~~~~~~~~~~~~a~~ 433 (490)
.|++..+...... ...++..+...|.+.|++++|+..|++... .++ ...+..++..+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9888876421111 135677788888899999999988887542 122 2356666777778899999999
Q ss_pred HHHHHHhhCCCCCch-----HHHHHHHHHhcCChHHHHH
Q 042265 434 AAEHVMKLKPEDGGV-----YKVLADVYANADRWEDVVK 467 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 467 (490)
.+++++ ..|..... ...++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 88875533 33445544 5677665555
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.97 E-value=9.1e-09 Score=87.31 Aligned_cols=182 Identities=8% Similarity=-0.036 Sum_probs=122.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCC
Q 042265 245 ALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGL 324 (490)
Q Consensus 245 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 324 (490)
.+......+...|++++|...|++..+.. |.+...+... ..... ..........+..++...|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~~~~----------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NVDKN----------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HSCTT----------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hhcch----------hhhhHHHHHHHHHHHHHCCC
Confidence 34445556667788888888888777653 2222222110 00000 00011223447788889999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC--HHHHHHH
Q 042265 325 GRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL--IEEALEM 402 (490)
Q Consensus 325 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~ 402 (490)
+++|+..|++..+... -+...+..+...+...|++++|...|+++.+ -.|.+...+..+...|...|. .+.+...
T Consensus 70 ~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 70 YDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999999888642 2667888888999999999999999999988 445667788888888766554 4456667
Q ss_pred HhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042265 403 IKKMPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 403 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 445 (490)
++.....+ ....+.....++...|++++|+..|++++++.|++
T Consensus 147 ~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 147 YKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 77665332 22344556666778899999999999999999974
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-08 Score=102.39 Aligned_cols=168 Identities=13% Similarity=-0.030 Sum_probs=87.7
Q ss_pred HccCChHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHc
Q 042265 254 ARLGELEQGKNIHRYIE--------LNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMH 322 (490)
Q Consensus 254 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~ 322 (490)
...|++++|...++++. +.. +.+...+..+..+|...|++++|.+.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 44555555555555555 222 33445555555555566666666655555442 2344555555555666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHH
Q 042265 323 GLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEM 402 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 402 (490)
|++++|+..|++..+... -+...+..+..++.+.|++++ .+.|+++.+ -.+.+...+..+..++.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666555321 133445555555556666666 666666555 2333445555566666666666666666
Q ss_pred HhhCCC-CC-CHHHHHHHHHHHHhcC
Q 042265 403 IKKMPM-GG-DVFVWSGLLGGCRIHG 426 (490)
Q Consensus 403 ~~~~~~-~~-~~~~~~~l~~~~~~~~ 426 (490)
|++... .| +...+..+..++...+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHhhcccCcccHHHHHHHHHHHHccC
Confidence 665442 22 3445555555544433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.95 E-value=8.1e-10 Score=87.95 Aligned_cols=98 Identities=13% Similarity=-0.068 Sum_probs=85.2
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (490)
+...+..+...+.+.|++++|...|++.. ..| ++..|..+..++...|++++|+..|+++++++|+++.++..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 44567778888889999999999998864 334 8889999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhcCC
Q 042265 457 ANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~~ 476 (490)
.+.|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999887653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.94 E-value=9.9e-08 Score=85.68 Aligned_cols=159 Identities=6% Similarity=-0.003 Sum_probs=119.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCc----hHHHH
Q 042265 315 MLVGLAMHGLGRLSLVYFSRMIEARI-KPDGV----TILGALVGCSHAGLVDEARKLFDEMESVYGVSKEL----KHYGC 385 (490)
Q Consensus 315 l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 385 (490)
.+..+...|++++|...+++...... .|+.. .+..+...+...|++++|...++++.+.....++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667888999999999988876422 22221 23345666777889999999999988731222232 26888
Q ss_pred HHhhhhhcCCHHHHHHHHhhCC-------CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHH
Q 042265 386 MADLLGRAGLIEEALEMIKKMP-------MGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED------GGVYK 450 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~-------~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 450 (490)
+...|...|++++|...++++. ..+ ...++..++..|.+.|++++|+..+++++++.+.. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999998887754 211 44578899999999999999999999999844332 45788
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHh
Q 042265 451 VLADVYANADR-WEDVVKIRRSLD 473 (490)
Q Consensus 451 ~l~~~~~~~g~-~~~A~~~~~~m~ 473 (490)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999988765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.7e-07 Score=79.75 Aligned_cols=230 Identities=10% Similarity=0.039 Sum_probs=159.5
Q ss_pred HhcCC-hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCChhhHHHHHHHH----Hh
Q 042265 219 AQSDQ-CEEAIQLFCNMMDLDIKPD-NIALVSALSACARLG--ELEQGKNIHRYIELNQIRVDSFLSTGLVDFY----AK 290 (490)
Q Consensus 219 ~~~g~-~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~ 290 (490)
.+.|. .++|++++++++.. .|+ ...++.--.++...+ ++++++..++.+.... +-+..+|+.-...+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 34444 46888988888875 344 445676677777777 8889999888888876 55555665544444 44
Q ss_pred c---CCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc---
Q 042265 291 C---GYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGR--LSLVYFSRMIEARIKPDGVTILGALVGCSHAGL--- 359 (490)
Q Consensus 291 ~---~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--- 359 (490)
. +++++++++++++.+ .|..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 4 678888888877764 35567777666777777777 888888888876543 55666655555555555
Q ss_pred ---HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH-HHHHHhhCCC-----CCCHHHHHHHHHHHHhcCCHHH
Q 042265 360 ---VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE-ALEMIKKMPM-----GGDVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 360 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~ 430 (490)
++++.+.++.+.. ..+-|...|+.+...+.+.|+..+ +..+..++.. ..++..+..++..+.+.|+.++
T Consensus 199 ~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 199 DNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 7888888888877 456677777777777777777544 4445555442 1277778888888888888888
Q ss_pred HHHHHHHHHh-hCCCCCchHHHHHH
Q 042265 431 AEAAAEHVMK-LKPEDGGVYKVLAD 454 (490)
Q Consensus 431 a~~~~~~~~~-~~p~~~~~~~~l~~ 454 (490)
|+++++.+.+ .+|.+...|...+.
T Consensus 277 A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 277 SRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHHHHh
Confidence 8888888886 78877766655443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-08 Score=78.05 Aligned_cols=108 Identities=11% Similarity=0.006 Sum_probs=73.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCR 423 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 423 (490)
.+......+.+.|++++|.+.|++..+ -.+.+...|..+..+|.+.|++++|+..+++.. ..| +...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 455556666677777777777777766 344556666667777777777777777776643 222 6677777777777
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
..|++++|++.|+++++++|+++.++..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777777666666544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.4e-08 Score=100.51 Aligned_cols=148 Identities=9% Similarity=-0.082 Sum_probs=90.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHH
Q 042265 256 LGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYF 332 (490)
Q Consensus 256 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 332 (490)
.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777777777776654 44566777777777777777777777776654 24556777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc---CCHHHHHHHHhhCC
Q 042265 333 SRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA---GLIEEALEMIKKMP 407 (490)
Q Consensus 333 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~ 407 (490)
++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+...+... |++++|.+.+++..
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 7777653 224566777777777777777777777777763 344556667777777777 77777777776643
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.90 E-value=9.2e-09 Score=93.17 Aligned_cols=196 Identities=9% Similarity=-0.044 Sum_probs=149.2
Q ss_pred ccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHH
Q 042265 255 RLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK-CGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFS 333 (490)
Q Consensus 255 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 333 (490)
..|++++|.+++++..+... .. +.+ .++++.|...|.+ ....|...|++++|...|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 35778889999988876531 11 112 4788888888765 3567889999999999998
Q ss_pred HHHHCCC---CC--CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHh
Q 042265 334 RMIEARI---KP--DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIK 404 (490)
Q Consensus 334 ~m~~~~~---~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (490)
+..+... .+ -..+|..+...|...|++++|...|++..+.+....+ ..++..+...|.. |++++|++.++
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8765311 11 1347888888899999999999999988764221111 3567788889988 99999999998
Q ss_pred hCCC----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC------chHHHHHHHHHhcCChHHHHHHHH
Q 042265 405 KMPM----GG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG------GVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 405 ~~~~----~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
+... .+ ...++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7531 11 256788899999999999999999999999765543 256677888888999999999999
Q ss_pred HHh
Q 042265 471 SLD 473 (490)
Q Consensus 471 ~m~ 473 (490)
+..
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.88 E-value=7.7e-08 Score=81.74 Aligned_cols=171 Identities=16% Similarity=0.025 Sum_probs=112.8
Q ss_pred hHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----ChHHHHHHH
Q 042265 94 NAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFH----RLRDAQELF 169 (490)
Q Consensus 94 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 169 (490)
+|++.|++..+.| +...+..+...+...+++++|...|+...+.| +...+..|...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666543 55566666666666777777777777776654 44555566666665 5 677777777
Q ss_pred HhcccC-CchhHHHHHHHHHh----cCCHHHHHHHHhhCCCCC-----eehHHHHHHHHHh----cCChhHHHHHHHHHH
Q 042265 170 DEILYR-DVVSCNTLIDGYVK----AGDLAHARQLFDRMPFRD-----AVSWGTLVAGYAQ----SDQCEEAIQLFCNMM 235 (490)
Q Consensus 170 ~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~g~~~~A~~~~~~m~ 235 (490)
++..++ +...+..+...|.. .+++++|.+.|++..+.+ +.++..|...|.. .+++++|.++|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 776554 45566666666665 667777777777755442 4677777777777 777888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHcc------CChHHHHHHHHHHHHcC
Q 042265 236 DLDIKPDNIALVSALSACARL------GELEQGKNIHRYIELNQ 273 (490)
Q Consensus 236 ~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~ 273 (490)
+. ..+...+..+...|... .+.++|..+++...+.|
T Consensus 157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 75 22344556666666432 27888888888877776
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=3.1e-09 Score=84.61 Aligned_cols=98 Identities=10% Similarity=-0.002 Sum_probs=44.7
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHh
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRI 424 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~ 424 (490)
+..+...+...|++++|...|+++.. ..+.+...+..+..+|...|++++|+..|++.. ..| ++..+..+..++..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 33344444455555555555555444 223334444444444444455555544444432 111 34444444444444
Q ss_pred cCCHHHHHHHHHHHHhhCCCCC
Q 042265 425 HGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 425 ~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.|++++|+..|+++++..|+++
T Consensus 102 ~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 102 XGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCG
T ss_pred cCCHHHHHHHHHHHHHHCcCCC
Confidence 4555555555555444444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=8.5e-08 Score=85.77 Aligned_cols=164 Identities=6% Similarity=-0.031 Sum_probs=119.2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC--CeehHH-HHH
Q 042265 240 KPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK--NLFTWN-AML 316 (490)
Q Consensus 240 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~-~l~ 316 (490)
+.+...+..+...+...|++++|...++++.+.. |.+...+..+..++.+.|++++|...++++... +..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3344566777788888899999999999888876 667788888889999999999999999988753 322221 222
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCH
Q 042265 317 VGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLI 396 (490)
Q Consensus 317 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 396 (490)
..+...++.++|+..+++..... +.+...+..+...+...|++++|...|+++.+......+...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 23556777788888888887753 23567777788888888888888888888887411112256677777777777877
Q ss_pred HHHHHHHhh
Q 042265 397 EEALEMIKK 405 (490)
Q Consensus 397 ~~A~~~~~~ 405 (490)
++|...+++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 777776654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-08 Score=83.96 Aligned_cols=184 Identities=11% Similarity=-0.038 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHhccCC--CC-ee---hHH
Q 042265 242 DNIALVSALSACARLGELEQGKNIHRYIELNQIRV--DSFLSTGLVDFYAKCGYINTAIEIFESSQE--KN-LF---TWN 313 (490)
Q Consensus 242 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~---~~~ 313 (490)
+...+..+...+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ |+ .. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44556677788899999999999999999874211 135778889999999999999999998764 32 22 455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCcHHHHHHHHHHhHHhh
Q 042265 314 AMLVGLAM------------------HGLGRLSLVYFSRMIEARIKPDGV-TILGALVGCSHAGLVDEARKLFDEMESVY 374 (490)
Q Consensus 314 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (490)
.+..++.. .|++++|...|+++++. .|+.. ....... . ..+...+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l------~~~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----L------VFLKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----H------HHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----H------HHHHHHHHH--
Confidence 55555554 57899999999999886 34432 2211111 0 011111111
Q ss_pred CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 375 GVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-D---VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
....+...|.+.|++++|+..|+++. ..| + ...+..+..++.+.|++++|++.++++....|++.
T Consensus 149 -------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 149 -------YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -------HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -------HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 12346777889999999999998865 233 2 35788889999999999999999999988888765
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-07 Score=91.49 Aligned_cols=374 Identities=9% Similarity=-0.048 Sum_probs=221.0
Q ss_pred CCC-ChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCC-cHHHHHHH
Q 042265 57 TTD-PLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCS-HSLAQTIH 134 (490)
Q Consensus 57 ~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~ 134 (490)
+.| +++.|+.+|++.. ..+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 556 3777777776643 11111 8999999999999874 4788888888887776663 45677788
Q ss_pred HHHHHh-CC-CCchhHHHHHHHHHHh----cCChHHHHHHHHhcccCCchhHHHHHHHHH---hcCCHHHHHHHHhhCCC
Q 042265 135 SQVLKL-GF-ICDVFVLNSLMHVYCV----FHRLRDAQELFDEILYRDVVSCNTLIDGYV---KAGDLAHARQLFDRMPF 205 (490)
Q Consensus 135 ~~~~~~-g~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~ 205 (490)
+..+.. |. +.+..+|...+..+.. .++.+.+.++|++.+......+..+-..|. +..+...+.+++.+
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~--- 148 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGD--- 148 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHH---
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHH---
Confidence 887764 42 3466788887776542 467888999999886532222222222221 11122222222221
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc--CC-----hHHHHHHHHHHHHcCCCCCh
Q 042265 206 RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARL--GE-----LEQGKNIHRYIELNQIRVDS 278 (490)
Q Consensus 206 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~ 278 (490)
. .+.+..|..+++++...-...+...|...+.--... +- .+.+..+|++++... +.+.
T Consensus 149 ------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~ 213 (493)
T 2uy1_A 149 ------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAE 213 (493)
T ss_dssp ------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCH
T ss_pred ------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCH
Confidence 1 122333444444433210001223444433332221 11 345677899988764 6678
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCC---CHHH
Q 042265 279 FLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEAR---------IKP---DGVT 346 (490)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~---------~~p---~~~~ 346 (490)
.+|...+..+.+.|+.+.|..+|++.... +..... -..|....+.++. ++.+.+.- ..+ ....
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l-~~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFL-SLYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHH-HHHHHHHTTCTHH---HHHHHHHTC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHH-HHHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHH
Confidence 88988999999999999999999875532 221111 1122222121221 22222210 011 1244
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc-CCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA-GLIEEALEMIKKMPM-GG-DVFVWSGLLGGCR 423 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~ 423 (490)
|...+....+.++.+.|..+|+++ .. ...+...|...+..-... ++.+.|..+|+.... -| ++..|...+....
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 666666666778899999999999 42 223444454333332233 369999999987542 23 5566777777788
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
..|+.+.|..+++++ +.....|...+..-...|+.+.+..++++..+
T Consensus 366 ~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 366 RIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999998 33556788888888888999999998888764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.3e-08 Score=83.06 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=11.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMD 236 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~ 236 (490)
...+...|++++|+..|++.++
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455555555555555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.5e-07 Score=82.51 Aligned_cols=214 Identities=13% Similarity=0.055 Sum_probs=171.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHhccCC---CCeehHHHHHHHH----HHc---CC
Q 042265 257 GELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG--YINTAIEIFESSQE---KNLFTWNAMLVGL----AMH---GL 324 (490)
Q Consensus 257 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 324 (490)
...++|+...+.++..+ |-+..+++.-..++...+ ++++++++++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 44568999999999887 667778888888888888 99999999998774 3556777665555 555 78
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHH--HHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC------H
Q 042265 325 GRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVD--EARKLFDEMESVYGVSKELKHYGCMADLLGRAGL------I 396 (490)
Q Consensus 325 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 396 (490)
+++++.+++++.+...+ +...|..-.-.+.+.|.++ ++.+.++++.+ ..+.|...|+.-..++...|+ +
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhH
Confidence 99999999999986433 6677777666677778887 99999999998 456677777776666666666 8
Q ss_pred HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhC---CCCCchHHHHHHHHHhcCChHHHHHHHH
Q 042265 397 EEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNV-EIAEAAAEHVMKLK---PEDGGVYKVLADVYANADRWEDVVKIRR 470 (490)
Q Consensus 397 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 470 (490)
+++++.++++. ..| |...|+.+...+.+.|+. +.+..+++++.+.+ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 88999888754 344 999999999888888874 44666888777765 8888899999999999999999999999
Q ss_pred HHhc
Q 042265 471 SLDA 474 (490)
Q Consensus 471 ~m~~ 474 (490)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=5.9e-08 Score=82.49 Aligned_cols=130 Identities=15% Similarity=-0.061 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
.+..+...+...|++++|...|++. +.|+...+..+...+...|++++|...+++..+. .+.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 3456677788899999999988876 3667888888888899999999999999998873 455677888888889
Q ss_pred hhcCCHHHHHHHHhhCCC-CC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 391 GRAGLIEEALEMIKKMPM-GG-----------------DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~-~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...|++++|.+.|++... .| ....+..+..++...|++++|...++++++..|.+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 999999999988887542 11 237788888888999999999999999999888763
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.84 E-value=4.8e-08 Score=79.21 Aligned_cols=127 Identities=13% Similarity=0.050 Sum_probs=98.4
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGC 422 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 422 (490)
..+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...+++.. ..| +...+..++..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555666677778888888888877763 34456677777788888888888888887643 223 778888899999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCChHHHHHHHHHHh
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV--YANADRWEDVVKIRRSLD 473 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~ 473 (490)
...|++++|...++++++..|.+...+..+..+ +.+.|++++|.+.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999999988777555544 778899999999988764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-08 Score=82.10 Aligned_cols=152 Identities=13% Similarity=-0.043 Sum_probs=99.1
Q ss_pred HHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCC---CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCccc
Q 042265 37 LTTILYAITTFKPISSASSPTTDPLSYALSIFNNIP---YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYS 113 (490)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 113 (490)
....+...+. +.|++++|...|++.. +.+...|..+...+.+.|++++|+..|++..+.. |+...
T Consensus 8 ~~~~~a~~~~----------~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~ 75 (176)
T 2r5s_A 8 QLLKQVSELL----------QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSY 75 (176)
T ss_dssp THHHHHHHHH----------HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHH
T ss_pred HHHHHHHHHH----------HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHH
Confidence 4455566666 6888999999888875 3566778888888888999999998888877643 43332
Q ss_pred HHHHHHH-HhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCC-----chhHHHHHHHH
Q 042265 114 FPFLLRA-CSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRD-----VVSCNTLIDGY 187 (490)
Q Consensus 114 ~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~ 187 (490)
+..+... +...++...+...++...+.. |.+...+..+..++...|++++|...|+++...+ ...+..+...+
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence 2222111 122233345677777777764 5567777788888888888888888887775432 22455555555
Q ss_pred HhcCCHHHHHHHHh
Q 042265 188 VKAGDLAHARQLFD 201 (490)
Q Consensus 188 ~~~~~~~~a~~~~~ 201 (490)
...|+.++|...|+
T Consensus 155 ~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 155 SALGQGNAIASKYR 168 (176)
T ss_dssp HHHCSSCHHHHHHH
T ss_pred HHhCCCCcHHHHHH
Confidence 55555555555444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.6e-08 Score=86.84 Aligned_cols=162 Identities=7% Similarity=-0.018 Sum_probs=116.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chH
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDG-----VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKH 382 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 382 (490)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++..+......+ ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344566677888888888888877765322111 12333455567788999999999888753111112 347
Q ss_pred HHHHHhhhhhcCCHHHHHHHHhhCC----CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--C----Cc
Q 042265 383 YGCMADLLGRAGLIEEALEMIKKMP----MGG-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE--D----GG 447 (490)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~----~~ 447 (490)
++.+...|...|++++|...+++.. ..+ ...++..++..|...|++++|+..++++++..+. + ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 7888889999999999998887653 122 2268888999999999999999999999884332 1 35
Q ss_pred hHHHHHHHHHhcCChHHH-HHHHHHHh
Q 042265 448 VYKVLADVYANADRWEDV-VKIRRSLD 473 (490)
Q Consensus 448 ~~~~l~~~~~~~g~~~~A-~~~~~~m~ 473 (490)
+|..++.+|.+.|++++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788999999999999999 77677654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-08 Score=77.27 Aligned_cols=96 Identities=8% Similarity=-0.003 Sum_probs=87.6
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
...+......|.+.|++++|++.|++.. ..| +...|..+..++.+.|++++|+..++++++++|+++.+|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3456778889999999999999999854 344 89999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhcC
Q 042265 458 NADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~ 475 (490)
..|++++|.+.|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.81 E-value=9.4e-08 Score=81.20 Aligned_cols=145 Identities=13% Similarity=-0.041 Sum_probs=112.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc
Q 042265 280 LSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGL 359 (490)
Q Consensus 280 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 359 (490)
.+..+...+...|++++|...|++...++...+..+...+...|++++|+..+++..... +.+...+..+...+...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345677788889999999999999888888888889999999999999999999888764 3356778888888999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCc----------------hHHHHHHhhhhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHH
Q 042265 360 VDEARKLFDEMESVYGVSKEL----------------KHYGCMADLLGRAGLIEEALEMIKKMP-MGGDVFVWSGLLGGC 422 (490)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~ 422 (490)
+++|...|+++.+. .+.+. ..+..+..+|...|++++|.+.|++.. ..|+.
T Consensus 87 ~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------- 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP---------- 154 (213)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG----------
T ss_pred HHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc----------
Confidence 99999999998873 33333 677888888999999999999998754 33332
Q ss_pred HhcCCHHHHHHHHHHH
Q 042265 423 RIHGNVEIAEAAAEHV 438 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~ 438 (490)
..+..+.+...+++.
T Consensus 155 -~~~~~~~a~~~~~~~ 169 (213)
T 1hh8_A 155 -RHSKIDKAMECVWKQ 169 (213)
T ss_dssp -GGGHHHHHHHHHHTT
T ss_pred -ccchHHHHHHHHHhc
Confidence 234555565555543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.7e-08 Score=75.83 Aligned_cols=116 Identities=11% Similarity=0.009 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHH
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGG 421 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 421 (490)
...+..+...+...|++++|...+++..+ ..+.+...+..+...+...|++++|.+.+++.. ..| +...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34555555666666666666666666665 333455566666666666777777776666543 122 67778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
+...|++++|+..++++++..|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999999888888888888888877654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.78 E-value=6.8e-08 Score=73.86 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC--CCCHHHHHHHHHH
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM--GGDVFVWSGLLGG 421 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~ 421 (490)
...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|..+++++.. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 455666667777777888888887777763 344556677777777788888888887776542 2267788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcC
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANAD 460 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 460 (490)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999988888888888776554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=90.25 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=39.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc-CChHHHHHHHHHHhcC
Q 042265 425 HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA-DRWEDVVKIRRSLDAG 475 (490)
Q Consensus 425 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 475 (490)
.|++++|++.++++++.+|++......+...+.+. +++++|.++|++..+.
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 57888888888888888887776666666666655 6788888888877653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=5.2e-08 Score=75.23 Aligned_cols=117 Identities=8% Similarity=-0.047 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHH
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGG 421 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 421 (490)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...+++.. ..| +...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345566666777778888888888887763 34456677777788888888888888887644 223 67788888999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 042265 422 CRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRW 462 (490)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (490)
+...|++++|...++++++..|+++..+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999988999999999888875
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-08 Score=79.05 Aligned_cols=89 Identities=12% Similarity=-0.027 Sum_probs=44.3
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 042265 385 CMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRW 462 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (490)
.+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++.+|+++..+..++.+|...|++
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 34444444455555555444432 122 4444555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHh
Q 042265 463 EDVVKIRRSLD 473 (490)
Q Consensus 463 ~~A~~~~~~m~ 473 (490)
++|.+.+++..
T Consensus 103 ~~A~~~~~~al 113 (142)
T 2xcb_A 103 DGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.9e-08 Score=82.84 Aligned_cols=126 Identities=13% Similarity=0.035 Sum_probs=85.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh-hhhcCCH-
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL-LGRAGLI- 396 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 396 (490)
+...|++++|...+++..... +.+...+..+...+...|++++|...|+++.+. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 345677777888887777653 235567777777777888888888888887763 33455666667777 6677777
Q ss_pred -HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 042265 397 -EEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG 447 (490)
Q Consensus 397 -~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 447 (490)
++|...+++.. ..| +...+..+...+...|++++|+..++++++..|+++.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 78877777654 223 6677777777777888888888888888887777664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=9.7e-08 Score=87.46 Aligned_cols=126 Identities=16% Similarity=0.034 Sum_probs=94.7
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC---------------chHHHHHHhhhhhcCCHHHHHHHHhhCC-CC
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKE---------------LKHYGCMADLLGRAGLIEEALEMIKKMP-MG 409 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 409 (490)
.+..+...+.+.|++++|...|++..+. .+.+ ...|..+..+|.+.|++++|+..+++.. ..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444444455555555555555555542 1111 3567778888888888888888887754 23
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHH-HHHHHHHh
Q 042265 410 G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDV-VKIRRSLD 473 (490)
Q Consensus 410 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 473 (490)
| +...+..+..++...|++++|+..|+++++++|++..++..++.++.+.|++++| ...+++|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 7888999999999999999999999999999999999999999999999999998 44566653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=72.99 Aligned_cols=90 Identities=10% Similarity=-0.034 Sum_probs=45.9
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
..+...+.+.|++++|+..|++.. ..| +...|..+..++...|++++|+..++++++.+|+++.++..++.++...|+
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence 334444444455555554444432 112 445555555555555555555555555555555555555555555555555
Q ss_pred hHHHHHHHHHHh
Q 042265 462 WEDVVKIRRSLD 473 (490)
Q Consensus 462 ~~~A~~~~~~m~ 473 (490)
+++|...+++..
T Consensus 88 ~~~A~~~~~~al 99 (126)
T 3upv_A 88 YASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.68 E-value=9.6e-08 Score=71.45 Aligned_cols=99 Identities=13% Similarity=0.051 Sum_probs=84.1
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CCchHHHHHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE--DGGVYKVLAD 454 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 454 (490)
+...+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|+..++++++..|. +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 45566777788888888888888887754 222 7788888999999999999999999999999999 8889999999
Q ss_pred HHHhc-CChHHHHHHHHHHhcCCC
Q 042265 455 VYANA-DRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 455 ~~~~~-g~~~~A~~~~~~m~~~~~ 477 (490)
++.+. |++++|.+.+++..+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999999887654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=7.2e-07 Score=80.02 Aligned_cols=212 Identities=9% Similarity=0.066 Sum_probs=129.3
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCccc---HHHHHHHHHcCCCchh
Q 042265 18 QIHAHFLTKGLLFLSPCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFS---YNTIIRAHTLFSSPLN 94 (490)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~ 94 (490)
..+..+.... .. |+..+...+...+. =.++ .+|..-...+... +...+..+...|++++
T Consensus 32 ~~~s~~e~g~-~~--~~~~~l~~i~~~l~------------~~~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~ 93 (293)
T 3u3w_A 32 SEVSRIESGA-VY--PSMDILQGIAAKLQ------------IPII---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKE 93 (293)
T ss_dssp HHHHHHHTTS-CC--CCHHHHHHHHHHHT------------CCTH---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCC-CC--CCHHHHHHHHHHhC------------cCHH---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHH
Confidence 3444444433 44 88888888888887 1222 2333333232332 3344677889999999
Q ss_pred HHHHHHHhhhCCC-CCCcc----cHHHHHHHHhccCCcHHHHHHHHHHHHhCCC-Cc----hhHHHHHHHHHHhcCChHH
Q 042265 95 AVVLFSQMRTVSI-PPDFY----SFPFLLRACSQLCSHSLAQTIHSQVLKLGFI-CD----VFVLNSLMHVYCVFHRLRD 164 (490)
Q Consensus 95 A~~~~~~m~~~~~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~ 164 (490)
|..++++..+... .|+.. .+..+...+...+++++|...++...+.... ++ ..+++.+..+|...|++++
T Consensus 94 a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~ 173 (293)
T 3u3w_A 94 IYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKK 173 (293)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999887421 12211 2334566667778999999999998884322 22 2367888888888888888
Q ss_pred HHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHhC----
Q 042265 165 AQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDL---- 237 (490)
Q Consensus 165 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---- 237 (490)
|...|+++.+ .++..... ...++..+...|.+.|++++|++.+++..+.
T Consensus 174 A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 174 GIDLFEQILK------------------------QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHH------------------------HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH------------------------HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 8888877531 11111110 1235566666777777777777776665532
Q ss_pred CCCCC-HHHHHHHHHHHHccCC-hHHHHHHHHHHHH
Q 042265 238 DIKPD-NIALVSALSACARLGE-LEQGKNIHRYIEL 271 (490)
Q Consensus 238 ~~~p~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~ 271 (490)
+..+. ...|..+..++...|+ .++|...++++..
T Consensus 230 ~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 22222 4566777777777774 4777777776654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.67 E-value=8.6e-08 Score=83.54 Aligned_cols=192 Identities=13% Similarity=-0.072 Sum_probs=108.8
Q ss_pred ccCChHHHHHHHHHHHHcCCCCChhhHHHH-------HHHHHhcCCHHHHHHHHhccCCC---------C----------
Q 042265 255 RLGELEQGKNIHRYIELNQIRVDSFLSTGL-------VDFYAKCGYINTAIEIFESSQEK---------N---------- 308 (490)
Q Consensus 255 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~---------~---------- 308 (490)
..++.+.|.+.|.++.+.. |-....|..+ ...+.+.++..+++..+....+- +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4566677777777766664 4445555555 34444444444444444333321 1
Q ss_pred -----eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC--ch
Q 042265 309 -----LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE--LK 381 (490)
Q Consensus 309 -----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 381 (490)
...+-.+...+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+...+. . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 0112334555666777777777776665432 33333333444566777777777777654431 1 111 22
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMPMGG-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVL 452 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 452 (490)
.+..+..++...|++++|++.|++....+ ..........++.+.|+.++|...|+++...+|. ..+...|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 45566777777777777777777654222 2335566666677777888888888887777776 5444444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.7e-07 Score=79.15 Aligned_cols=170 Identities=8% Similarity=0.005 Sum_probs=95.7
Q ss_pred ccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc------ccHHHHHHHHhccCCcHHHHHHHHHHHHhCCC---Cc--
Q 042265 77 FSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF------YSFPFLLRACSQLCSHSLAQTIHSQVLKLGFI---CD-- 145 (490)
Q Consensus 77 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---~~-- 145 (490)
..+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...++...+.... +.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34555666677777777777777766654211 11 11223334445556667776666666543211 11
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHHHhcC
Q 042265 146 VFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGYAQSD 222 (490)
Q Consensus 146 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g 222 (490)
..+++.+...|...|++++|...+++.. ++++..... ...++..+...|...|
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal------------------------~~~~~~~~~~~~~~~~~~nlg~~y~~~~ 210 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQIL------------------------KQLEALHDNEEFDVKVRYNHAKALYLDS 210 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------------HHHHHSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------HHHHhcCccccchHHHHHhHHHHHHHHh
Confidence 2355555666666666666666555532 111111111 1246677777788888
Q ss_pred ChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCChHHH-HHHHHHHHH
Q 042265 223 QCEEAIQLFCNMMDL----DIKP-DNIALVSALSACARLGELEQG-KNIHRYIEL 271 (490)
Q Consensus 223 ~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 271 (490)
++++|+..+++..+. +... -..+|..+..++...|+.++| ...+++...
T Consensus 211 ~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 211 RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 888888887776542 1111 145667777777888888887 666665543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-07 Score=77.24 Aligned_cols=96 Identities=10% Similarity=-0.036 Sum_probs=72.2
Q ss_pred hHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 381 KHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
..+..+..+|...|++++|+..+++.. ..| +...+..+..++...|++++|+..++++++..|.++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 566777778888888888888887754 223 788889999999999999999999999999999999999999999999
Q ss_pred cCChHHHH-HHHHHHhcCC
Q 042265 459 ADRWEDVV-KIRRSLDAGK 476 (490)
Q Consensus 459 ~g~~~~A~-~~~~~m~~~~ 476 (490)
.++.+++. ..++.|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 98888877 5566665443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=9.4e-08 Score=72.94 Aligned_cols=95 Identities=16% Similarity=0.001 Sum_probs=82.8
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA 459 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (490)
.+..+...+.+.|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34556777888999999999998864 334 8889999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCC
Q 042265 460 DRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 460 g~~~~A~~~~~~m~~~~ 476 (490)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-05 Score=70.45 Aligned_cols=231 Identities=11% Similarity=0.031 Sum_probs=147.6
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-C-C
Q 042265 217 GYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLG-ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC-G-Y 293 (490)
Q Consensus 217 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 293 (490)
...+.+..++|++++++++... +-+...++.--.++...| .+++++.+++.+.... +-+..+|+.-..++.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 3344555678888888888753 224445666666666667 5888888888888776 56667777666666666 6 7
Q ss_pred HHHHHHHHhccCCC---CeehHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc---
Q 042265 294 INTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGR--------LSLVYFSRMIEARIKPDGVTILGALVGCSHAGL--- 359 (490)
Q Consensus 294 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~--- 359 (490)
+++++++++++.+. |..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccccc
Confidence 88888888887764 4445555554554545555 788888888876433 66677766666666664
Q ss_pred ----HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCH--------------------HHHHHHHhhCCCC------
Q 042265 360 ----VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLI--------------------EEALEMIKKMPMG------ 409 (490)
Q Consensus 360 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~------ 409 (490)
++++.+.++++.. ..+-|...|+.+-..+.+.|+. .+..+...++...
T Consensus 220 ~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT 297 (349)
T ss_dssp CHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred chHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence 6778888888776 4556667777666666666553 2333333333221
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCCchHHHH
Q 042265 410 --GDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK-LKPEDGGVYKVL 452 (490)
Q Consensus 410 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l 452 (490)
+++..+..++..|...|+.++|.++++.+.+ .+|-....|...
T Consensus 298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 2666667777777777777777777777763 666555444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=8.2e-08 Score=76.28 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=86.9
Q ss_pred CCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 378 KELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
.+...+..+...+...|++++|...|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 355667778888999999999999998864 334 888999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHhcC
Q 042265 456 YANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 456 ~~~~g~~~~A~~~~~~m~~~ 475 (490)
|...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-07 Score=72.27 Aligned_cols=100 Identities=14% Similarity=-0.079 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHH
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLG 420 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 420 (490)
+...+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|...+++.. ..| +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3445555555555666666666666655552 23334445555555555555555555554432 112 4455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
++...|++++|+..++++++..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555554444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.9e-07 Score=68.74 Aligned_cols=108 Identities=14% Similarity=0.049 Sum_probs=59.8
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCR 423 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 423 (490)
.+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|...+++.. ..| +...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444445555556666666666655552 23344455555555555555555555555432 112 4555666666666
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 424 IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
..|++++|...++++.+..|+++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666665555554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.3e-07 Score=80.88 Aligned_cols=182 Identities=12% Similarity=-0.030 Sum_probs=136.2
Q ss_pred hcCCHHHHHHHHhccCCC---CeehHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCC----------------
Q 042265 290 KCGYINTAIEIFESSQEK---NLFTWNAM-------LVGLAMHGLGRLSLVYFSRMIEARIKPD---------------- 343 (490)
Q Consensus 290 ~~~~~~~A~~~~~~~~~~---~~~~~~~l-------~~~~~~~~~~~~A~~~~~~m~~~~~~p~---------------- 343 (490)
..++...|.+.|.++.+- ....|..+ ...+...++..+++..+.+-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 578999999999988753 34567766 4555555555555555554433 2222
Q ss_pred ------HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCC----HH
Q 042265 344 ------GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGD----VF 413 (490)
Q Consensus 344 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~ 413 (490)
......+...+...|++++|.+.|+.+.. +- |+......+...+.+.+++++|+..|+.....++ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~--~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV--AG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC--TT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 12233455667889999999999999886 32 3332666677789999999999999997765543 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKLK--PE-DGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.+..+..++...|++++|+..|+++.... |. .+......+.++.+.|+.++|..+|+++.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77888999999999999999999998633 54 44578899999999999999999999998754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-07 Score=76.31 Aligned_cols=110 Identities=14% Similarity=-0.010 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHH
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLG 420 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 420 (490)
+...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|+..+++.. ..| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4567778888899999999999999999983 45577888999999999999999999998854 233 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
++...|++++|+..+++++++.|++...+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 9999999999999999999999999876655443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=72.88 Aligned_cols=92 Identities=7% Similarity=-0.027 Sum_probs=54.7
Q ss_pred HHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc-------hHHHHH
Q 042265 383 YGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG-------VYKVLA 453 (490)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 453 (490)
+..+...+.+.|++++|++.|++.. ..| +...|..+..+|...|++++|++.+++++++.|++.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3445555556666666666665532 222 5566666666666666666666666666665555432 455556
Q ss_pred HHHHhcCChHHHHHHHHHHhc
Q 042265 454 DVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~m~~ 474 (490)
.++...|++++|++.|++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 666666666666666666544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.4e-07 Score=70.83 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=88.8
Q ss_pred CCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 377 SKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
+.+...+..+...+...|++++|.+.+++.. ..| +...+..+...+...|++++|+..++++++..|.++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3445677888999999999999999999854 333 88899999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHhcC
Q 042265 455 VYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 455 ~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.2e-07 Score=76.38 Aligned_cols=83 Identities=12% Similarity=-0.072 Sum_probs=37.3
Q ss_pred hcCCHHHHHH---HHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhhccCcHH
Q 042265 290 KCGYINTAIE---IFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA----RIKP-DGVTILGALVGCSHAGLVD 361 (490)
Q Consensus 290 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 361 (490)
..|++++|.+ .+..-.......+..+...+...|++++|...+++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455566655 443322223344555555555555555555555554431 1111 1233444444455555555
Q ss_pred HHHHHHHHhHH
Q 042265 362 EARKLFDEMES 372 (490)
Q Consensus 362 ~a~~~~~~~~~ 372 (490)
+|...+++..+
T Consensus 84 ~A~~~~~~al~ 94 (203)
T 3gw4_A 84 AARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=5.1e-07 Score=69.35 Aligned_cols=111 Identities=11% Similarity=-0.064 Sum_probs=85.5
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGC 422 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 422 (490)
..+..+...+...|++++|...|++..+ ..+.+...+..+..+|.+.|++++|+..+++.. ..| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4455666667778888888888888777 345566777788888888888888888887754 233 788888999999
Q ss_pred HhcCCHHHHHHHHHHHHhhC------CCCCchHHHHHHHHH
Q 042265 423 RIHGNVEIAEAAAEHVMKLK------PEDGGVYKVLADVYA 457 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 457 (490)
...|++++|+..++++++.. |.+..+...+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999988 877766666665543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.1e-07 Score=75.41 Aligned_cols=121 Identities=6% Similarity=0.056 Sum_probs=99.0
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHH-HHhcCCH--
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGG-CRIHGNV-- 428 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~~~~-- 428 (490)
+...|++++|...+++..+ ..+.+...+..+...|...|++++|...|++.. ..| +...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 4567888999999998887 345677888889999999999999999998854 223 77888888888 7788998
Q ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 429 EIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 429 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
++|+..++++++..|+++.++..++.+|...|++++|...+++..+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999999999999899999999999999999999999988764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.6e-07 Score=73.37 Aligned_cols=92 Identities=10% Similarity=0.042 Sum_probs=44.1
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA 459 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (490)
.+..+...+.+.|++++|+..|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34444444445555555555544432 112 4444444444455555555555555555555555444455555555555
Q ss_pred CChHHHHHHHHHHh
Q 042265 460 DRWEDVVKIRRSLD 473 (490)
Q Consensus 460 g~~~~A~~~~~~m~ 473 (490)
|++++|...|++..
T Consensus 93 g~~~~A~~~~~~al 106 (164)
T 3sz7_A 93 ADYKGAKEAYEKGI 106 (164)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 55555555544443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-07 Score=72.95 Aligned_cols=107 Identities=16% Similarity=0.040 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGC 422 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 422 (490)
..+..+...+...|++++|...|+++.. ..+.+...+..+..+|...|++++|...|++.. ..| ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3444556667778888888888888877 345567777788888888888888888887754 223 777888899999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
...|++++|+..++++++..|+++.......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 9999999999999999999998875554433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-07 Score=83.69 Aligned_cols=97 Identities=10% Similarity=-0.088 Sum_probs=68.7
Q ss_pred CcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 75 STFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...++...+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556667777777788888888887777643 2245566677777777778888877777777654 556667777777
Q ss_pred HHHhcCChHHHHHHHHhcc
Q 042265 155 VYCVFHRLRDAQELFDEIL 173 (490)
Q Consensus 155 ~~~~~g~~~~A~~~~~~~~ 173 (490)
++...|++++|...|++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 7777777777777777763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=5.3e-07 Score=71.56 Aligned_cols=100 Identities=12% Similarity=-0.034 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGC 422 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 422 (490)
..+..+...+.+.|++++|...|+++.+ -.|.+...|..+..+|...|++++|+..|++.. ..| ++..|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3455566667778888888888888777 345566777778888888888888888887753 233 677888888889
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
...|++++|+..|++++++.|+++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999888754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-06 Score=66.21 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=87.0
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
...+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|...++++++..|+++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4556778888999999999999999864 233 88899999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhcCC
Q 042265 458 NADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~~ 476 (490)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999987654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.51 E-value=5e-07 Score=75.87 Aligned_cols=64 Identities=16% Similarity=0.004 Sum_probs=32.4
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDL----DIKP-DNIALVSALSACARLGELEQGKNIHRYIEL 271 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 271 (490)
..++..+...+...|++++|...+++..+. +..| ....+..+...+...|++++|...+++..+
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 94 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERE 94 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555556666666666665555431 1111 123444555555555666666555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.49 E-value=6.8e-07 Score=68.11 Aligned_cols=97 Identities=13% Similarity=0.222 Sum_probs=87.1
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
...+..+...+...|++++|.+.++++.. .| +..++..++..+...|++++|+..++++.+..|.++.++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 46678888999999999999999988642 23 78889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHhcCC
Q 042265 458 NADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 458 ~~g~~~~A~~~~~~m~~~~ 476 (490)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999987653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=9.4e-05 Score=66.69 Aligned_cols=174 Identities=11% Similarity=0.007 Sum_probs=101.7
Q ss_pred HcCCCchhHHHHHHHhhhCCCCCCcc-cHHHHHHHHhccC-CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-Ch
Q 042265 87 TLFSSPLNAVVLFSQMRTVSIPPDFY-SFPFLLRACSQLC-SHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVF-H-RL 162 (490)
Q Consensus 87 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g-~~ 162 (490)
.+.+..++|+++++++.... |+.. .|+.--..+...| .+++++.+++.++... +.+..+|+.-..++.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 34445556777777777643 4433 3554444455555 4777777777777664 55666666666665555 5 66
Q ss_pred HHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChh--------HHHHHHHHH
Q 042265 163 RDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCE--------EAIQLFCNM 234 (490)
Q Consensus 163 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m 234 (490)
++++++++++.+.|+.. ..+|+.-.-.+.+.|.++ ++++.++++
T Consensus 142 ~~EL~~~~k~L~~dpkN----------------------------y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKN----------------------------YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp HHHHHHHHHHTSSCTTC----------------------------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC----------------------------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 66666666665544332 222322222222223333 777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHccCC-------hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 042265 235 MDLDIKPDNIALVSALSACARLGE-------LEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGY 293 (490)
Q Consensus 235 ~~~~~~p~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 293 (490)
++.. +-|...|+.....+.+.+. ++++.+.++++.... +-|...|+-+-..+.+.|+
T Consensus 194 I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 194 LRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 7754 3366667666666666665 567777777777665 6666777666655555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=68.36 Aligned_cols=99 Identities=9% Similarity=-0.049 Sum_probs=83.7
Q ss_pred CCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 377 SKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
+.+...+..+...+...|++++|...|++.. ..| +...+..+...+...|++++|+..++++++..|+++.++..++.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3456778888888999999999999988754 233 78888888888999999999999999999999998888999999
Q ss_pred HHHhcCChHHHHHHHHHHhcC
Q 042265 455 VYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 455 ~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+|...|++++|...+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999887654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-07 Score=71.42 Aligned_cols=89 Identities=11% Similarity=-0.000 Sum_probs=40.6
Q ss_pred cCcHHHHHHHHHHhHHhhC--CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 042265 357 AGLVDEARKLFDEMESVYG--VSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAE 432 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~ 432 (490)
.|++++|+..|+++.+. + .+.+...+..+..+|...|++++|.+.|++.. ..| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555542 1 12233444445555555555555555554432 112 4444555555555555555555
Q ss_pred HHHHHHHhhCCCCC
Q 042265 433 AAAEHVMKLKPEDG 446 (490)
Q Consensus 433 ~~~~~~~~~~p~~~ 446 (490)
..++++++..|+++
T Consensus 82 ~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 82 ELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCCcH
Confidence 55555555555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-06 Score=68.04 Aligned_cols=110 Identities=12% Similarity=-0.007 Sum_probs=66.0
Q ss_pred CHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHH
Q 042265 343 DGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWS 416 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 416 (490)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|...+++.. ..| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 3455566666666677777777777766642 233 4555566666666666666666665533 122 555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 417 GLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 417 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
.+..++...|++++|...++++++..|++..++..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 666666666666666666666666666665555544444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.2e-06 Score=69.13 Aligned_cols=127 Identities=13% Similarity=-0.056 Sum_probs=93.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhh
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLL 390 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (490)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 45566677778888888888888877653 235667777778888888888888888888873 455667788888888
Q ss_pred hhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHh
Q 042265 391 GRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGG--CRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~ 440 (490)
...|++++|...+++... .| +...+..+..+ +...|++++|+..+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888877542 23 55555433333 7778899999998888765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-06 Score=68.53 Aligned_cols=98 Identities=10% Similarity=0.002 Sum_probs=73.8
Q ss_pred CCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHH
Q 042265 378 KELKHYGCMADLLGRAGLIEEALEMIKKMP-MGGD----VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVL 452 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 452 (490)
.+...+..+...+...|++++|.+.|++.. ..|+ ...+..+...+...|++++|+..++++++..|+++..+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 455666777777778888888888887743 3344 56777777778888888888888888888888777777888
Q ss_pred HHHHHhcCChHHHHHHHHHHhcC
Q 042265 453 ADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+.+|...|++++|...+++..+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888888888888888777654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-06 Score=83.69 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=75.9
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
...|..+..+|.+.|++++|+..+++.. ..| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3567778888888999999998888754 223 78899999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHH-HHHHHhc
Q 042265 458 NADRWEDVVK-IRRSLDA 474 (490)
Q Consensus 458 ~~g~~~~A~~-~~~~m~~ 474 (490)
+.|+++++.+ .+++|..
T Consensus 397 ~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 9999988774 4555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.43 E-value=4e-07 Score=87.55 Aligned_cols=118 Identities=14% Similarity=0.072 Sum_probs=95.7
Q ss_pred HHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 042265 352 VGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVE 429 (490)
Q Consensus 352 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~ 429 (490)
..+.+.|++++|.+.|+++.+. .+.+...+..+..+|.+.|++++|++.+++.. ..| +...+..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3456778888888888888873 44567788888888899999999998888754 333 7889999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchHHHHHHH--HHhcCChHHHHHHHHH
Q 042265 430 IAEAAAEHVMKLKPEDGGVYKVLADV--YANADRWEDVVKIRRS 471 (490)
Q Consensus 430 ~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 471 (490)
+|++.++++++..|++..++..++.+ +.+.|++++|.+.+++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999888 8889999999999883
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-06 Score=67.19 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=87.6
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (490)
+...+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|+..++++++..|+++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45567788889999999999999998854 233 7889999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHhcCC
Q 042265 457 ANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~~ 476 (490)
...|++++|...+++..+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999987653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=68.79 Aligned_cols=107 Identities=15% Similarity=0.105 Sum_probs=75.4
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLGGCR 423 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~ 423 (490)
..+......+.+.|++++|...|++..+.....|+.. .....| +...|..+..++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-----------------------a~~~~~~~a~a~~n~g~al~ 68 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-----------------------AFDHAGFDAFCHAGLAEALA 68 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-----------------------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-----------------------hhhhccchHHHHHHHHHHHH
Confidence 3444555566677788888888777776421112110 000000 3347888888888
Q ss_pred hcCCHHHHHHHHHHHHhh-------CCCCCchH----HHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 424 IHGNVEIAEAAAEHVMKL-------KPEDGGVY----KVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
+.|++++|+..+++++++ +|++..+| +..+.++...|++++|+..|++..+
T Consensus 69 ~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 69 GLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888888888888888888 99888888 8899999999999999999888753
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=9.2e-06 Score=77.19 Aligned_cols=161 Identities=7% Similarity=-0.168 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHhhccCcHHHHHHHHHHhHHhh---CCCC-CchHH
Q 042265 313 NAMLVGLAMHGLGRLSLVYFSRMIEA-RIKPDG----VTILGALVGCSHAGLVDEARKLFDEMESVY---GVSK-ELKHY 383 (490)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~m~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~ 383 (490)
..++..|...|++++|.+.+.++... +..++. ...+.+-..+...|++++|..+++...... +..+ ...++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 44555555566666666555554431 011111 112222233445566677766666654321 1111 23355
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC----Cch
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP-------MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK---PED----GGV 448 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~~ 448 (490)
..+...|...|++++|..+++++. .++ ...++..++..|...|++++|..++++++... +.+ ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 566777777777777776665432 111 34566667777777777777777777776622 221 124
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHh
Q 042265 449 YKVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 449 ~~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+..++..+...|++++|...+.+..
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555666667777777777665553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.37 E-value=9e-07 Score=71.45 Aligned_cols=103 Identities=12% Similarity=-0.016 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhC----------------CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMESVYG----------------VSKELKHYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
...+......+.+.|++++|...|.+...... .+.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44566677778888888888888888876310 11123455666666666677777766666543
Q ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 408 -MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 408 -~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
..| +...|..++.++...|++++|+..++++++++|+++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 222 566666666666677777777777777777666665
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.6e-06 Score=66.65 Aligned_cols=109 Identities=11% Similarity=-0.041 Sum_probs=67.0
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-----CC----HHHHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-----GD----VFVWS 416 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~----~~~~~ 416 (490)
.+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...+++.... ++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444445555556666666666665552 2334455555555666666666666655553211 11 56677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 417 GLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 417 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
.+...+...|++++|...++++++..| ++.....+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 788888888888888888888888877 4556666655543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=7.2e-05 Score=67.10 Aligned_cols=228 Identities=9% Similarity=0.023 Sum_probs=114.2
Q ss_pred hcCChh-HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 220 QSDQCE-EAIQLFCNMMDLDIKPDNI-ALVSALSACARLGE----------LEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 220 ~~g~~~-~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
+.|.++ +|+++++.++.. .|+.. .++.--..+...+. ++++..+++.+.... |-+..+|+--.-+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444443 567777776654 33332 23332222222221 455666666666554 4555555555555
Q ss_pred HHhcC--CHHHHHHHHhccCC---CCeehHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc----
Q 042265 288 YAKCG--YINTAIEIFESSQE---KNLFTWNAMLVGLAMHGL-GRLSLVYFSRMIEARIKPDGVTILGALVGCSHA---- 357 (490)
Q Consensus 288 ~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---- 357 (490)
+.+.+ .+++++.+++++.+ .|..+|+.-.-.+...|. ++++++.++++++..+. |...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 55555 36666666666553 244555555555556666 46777777777665432 444444443333322
Q ss_pred ----------CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc-----------CCHHHHHHHHhhCC-CCC-CHHH
Q 042265 358 ----------GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRA-----------GLIEEALEMIKKMP-MGG-DVFV 414 (490)
Q Consensus 358 ----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~-~~~-~~~~ 414 (490)
+.++++.+.+..... ..|-|...|+.+-..+.+. +.++++++.++++. ..| +...
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~ 274 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWC 274 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchH
Confidence 346666666666665 3444555555444444333 23455555554432 222 2222
Q ss_pred HHHHHH---HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 415 WSGLLG---GCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 415 ~~~l~~---~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
+..++. +....|..++....+.++.+++|....-|.-+.
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 222111 111345556666666666666666554444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-06 Score=66.57 Aligned_cols=99 Identities=11% Similarity=-0.003 Sum_probs=64.6
Q ss_pred HHHHHhhccCcHHHHHHHHHHhHHhhCCCCCc---hHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-C---HHHHHHHHH
Q 042265 349 GALVGCSHAGLVDEARKLFDEMESVYGVSKEL---KHYGCMADLLGRAGLIEEALEMIKKMP-MGG-D---VFVWSGLLG 420 (490)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---~~~~~~l~~ 420 (490)
.+...+...|++++|...|+.+.+. .+.+. ..+..+..++...|++++|...++++. ..| + ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3445566777788888877777763 22233 356666777777777777777776643 222 3 556666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPEDGGVY 449 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 449 (490)
++...|++++|+..++++++..|+++.+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 77777777777777777777777665433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.31 E-value=5e-06 Score=76.02 Aligned_cols=129 Identities=8% Similarity=-0.124 Sum_probs=89.9
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhC
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPD--------------GVTILGALVGCSHAGLVDEARKLFDEMESVYG 375 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 375 (490)
..+..+...+.+.|++++|+..|++......... ...+..+..++.+.|++++|...++++.+ -
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--L 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 3455555666666666666666666665422211 36777777788888888888888888887 3
Q ss_pred CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 042265 376 VSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIA-EAAAEHVMK 440 (490)
Q Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 440 (490)
.+.+...+..+..+|...|++++|...|++.. ..| +...+..+...+...|+.++| ...++++..
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888888888887754 233 677788888888888888877 446666554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-06 Score=66.12 Aligned_cols=97 Identities=11% Similarity=0.040 Sum_probs=67.4
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH 425 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 425 (490)
..+...+.+.|++++|...++++.+ ..+.+...+..+..++...|++++|+..|++.. ..| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444556677778888877777776 344566677777777778888888888777643 233 677788888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCC
Q 042265 426 GNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~ 446 (490)
|++++|+..++++++.+|.+.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=73.24 Aligned_cols=138 Identities=15% Similarity=-0.032 Sum_probs=87.9
Q ss_pred CCCChhHHHHhhccCCC---CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCc----------------ccHHHH
Q 042265 57 TTDPLSYALSIFNNIPY---PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDF----------------YSFPFL 117 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l 117 (490)
..|+++++.+.++.... .....+..+...+.+.|++++|+..|++..+.. +.+. ..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHH
Confidence 56788888888875432 245567788889999999999999999998753 1122 456666
Q ss_pred HHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc--C-CchhHHHHHHHHHhcCCHH
Q 042265 118 LRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY--R-DVVSCNTLIDGYVKAGDLA 194 (490)
Q Consensus 118 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 194 (490)
..++...|++++|...++..++.. +.+...+..+..++...|++++|...|++... | +...+..+..++...++.+
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 173 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR 173 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777764 55666777777777777777777777776632 2 3344444444444444443
Q ss_pred HH
Q 042265 195 HA 196 (490)
Q Consensus 195 ~a 196 (490)
++
T Consensus 174 ~~ 175 (198)
T 2fbn_A 174 KK 175 (198)
T ss_dssp C-
T ss_pred HH
Confidence 33
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.6e-06 Score=63.14 Aligned_cols=91 Identities=13% Similarity=0.017 Sum_probs=63.2
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCCC-CC-CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---CchHHHHHHHH
Q 042265 385 CMADLLGRAGLIEEALEMIKKMPM-GG-DV---FVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED---GGVYKVLADVY 456 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 456 (490)
.+...+...|++++|...|+++.. .| +. ..+..+..++...|++++|+..++++++..|++ +.++..++.++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 455666677777777777776432 22 22 466667777777777777777777777777777 55577777777
Q ss_pred HhcCChHHHHHHHHHHhcC
Q 042265 457 ANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~ 475 (490)
...|++++|...++++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3e-06 Score=78.48 Aligned_cols=90 Identities=13% Similarity=0.025 Sum_probs=78.6
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (490)
+...|..+..+|.+.|++++|++.+++.. ..| +...+..+..+|...|++++|+..+++++++.|++..++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45677888889999999999999998854 334 7889999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHH
Q 042265 457 ANADRWEDVVKI 468 (490)
Q Consensus 457 ~~~g~~~~A~~~ 468 (490)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999888887654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.9e-06 Score=66.27 Aligned_cols=97 Identities=10% Similarity=0.129 Sum_probs=84.7
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------CchHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED-------GGVYK 450 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 450 (490)
...+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|+..++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3456778889999999999999998864 223 78889999999999999999999999999987766 67899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 451 VLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.++.++.+.|++++|.+.+++..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999988753
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00014 Score=65.28 Aligned_cols=217 Identities=14% Similarity=0.042 Sum_probs=153.2
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHhccCC---CCeehHHHHHHHHH
Q 042265 255 RLGEL-EQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGY----------INTAIEIFESSQE---KNLFTWNAMLVGLA 320 (490)
Q Consensus 255 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 320 (490)
+.|.+ ++|......+...+ |-+..+|+.--..+...+. +++++.+++.+.. .+..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44554 47899999998776 4555556554444433333 5778888877664 36678887777777
Q ss_pred HcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc-HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhc----
Q 042265 321 MHG--LGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGL-VDEARKLFDEMESVYGVSKELKHYGCMADLLGRA---- 393 (490)
Q Consensus 321 ~~~--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 393 (490)
..+ .+++++.+++++.+.... |...|+.-...+...|. ++++.+.++.+.+ ..+.|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhcc
Confidence 777 489999999999987533 66777766666667777 6899999999998 4566777777666665544
Q ss_pred ----------CCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 394 ----------GLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH-----------GNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 394 ----------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
+.++++++.+++.. ..| |...|+-+-..+... +.++++++.++++++..|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 45788888887754 444 888887666665554 4578999999999999998853333
Q ss_pred HHHHH---HHhcCChHHHHHHHHHHhcC
Q 042265 451 VLADV---YANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 451 ~l~~~---~~~~g~~~~A~~~~~~m~~~ 475 (490)
.++.. ....|..+++...+.++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 33322 22467788899999888653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.4e-06 Score=61.60 Aligned_cols=100 Identities=10% Similarity=-0.075 Sum_probs=76.5
Q ss_pred CCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCC--chhHHHH
Q 042265 74 PSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFIC--DVFVLNS 151 (490)
Q Consensus 74 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~ 151 (490)
.+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 456677778888888888888888888887653 3345567777778888888888888888888764 44 5777788
Q ss_pred HHHHHHhc-CChHHHHHHHHhcccC
Q 042265 152 LMHVYCVF-HRLRDAQELFDEILYR 175 (490)
Q Consensus 152 li~~~~~~-g~~~~A~~~~~~~~~~ 175 (490)
+..++.+. |++++|.+.+++....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 88888888 8888888888877543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.26 E-value=6.4e-06 Score=65.90 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=74.2
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCCC----CC----CHHHH
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMPM----GG----DVFVW 415 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----~~~~~ 415 (490)
..+...+...|++++|...+++..+.....++ ...+..+...+...|++++|.+.+++... .+ ....+
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 33344444445555555554444332100011 12344455555555666655555554321 11 24456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCC------CCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 416 SGLLGGCRIHGNVEIAEAAAEHVMKLKPE------DGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 416 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
..+...+...|++++|...++++++..+. ...++..++.++...|++++|.+.+++..+
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 67777788888888888888888773221 134677888888899999999998887654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.4e-06 Score=68.83 Aligned_cols=92 Identities=12% Similarity=0.037 Sum_probs=58.5
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCCCC-------------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMPMG-------------------G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 443 (490)
......+.+.|++++|+..|++.... | +...|..+..++.+.|++++|+..++++++++|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 34555566666777666666553211 1 334566666666677777777777777777777
Q ss_pred CCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 444 EDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 444 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+++.+|..++.+|...|++++|...+++..+.
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 76666777777777777777777766665543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-06 Score=79.08 Aligned_cols=147 Identities=11% Similarity=-0.013 Sum_probs=79.8
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 34556666667778888888888777664 343321 223344444332221 1367788899
Q ss_pred hhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH-HhcCChHHHH
Q 042265 390 LGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY-ANADRWEDVV 466 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 466 (490)
|.+.|++++|+..+++.. ..| +...|..+..+|...|++++|+..|+++++++|+++.++..+..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998754 233 8889999999999999999999999999999999998888888774 4556788888
Q ss_pred HHHHHHhcCC
Q 042265 467 KIRRSLDAGK 476 (490)
Q Consensus 467 ~~~~~m~~~~ 476 (490)
..|++|....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8998887654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.6e-06 Score=64.04 Aligned_cols=96 Identities=9% Similarity=-0.017 Sum_probs=55.2
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC--------CHHHHHH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG--------DVFVWSG 417 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--------~~~~~~~ 417 (490)
+..+...+.+.|++++|+..|++..+ -.|.+...|..+..+|...|++++|++.+++... .| -..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 33344444455555555555555544 2233344445555555555555555555544321 00 1235667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
+..++...|++++|++.|+++++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 778888899999999999999887774
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00024 Score=67.26 Aligned_cols=162 Identities=9% Similarity=-0.139 Sum_probs=91.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHc----CCC-CChhh
Q 042265 211 WGTLVAGYAQSDQCEEAIQLFCNMMDLDI-KPDN----IALVSALSACARLGELEQGKNIHRYIELN----QIR-VDSFL 280 (490)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 280 (490)
+..++..|...|++++|.+.+..+...-. .++. ...+.+...+...|+.+.+..++...... +.. .-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566666666666666666666543210 1111 11222233334556677777666665432 111 12345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC----C-----CeehHHHHHHHHHHcCChHHHHHHHHHHHHC--CC-CC-C--HH
Q 042265 281 STGLVDFYAKCGYINTAIEIFESSQE----K-----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA--RI-KP-D--GV 345 (490)
Q Consensus 281 ~~~l~~~~~~~~~~~~A~~~~~~~~~----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~-~p-~--~~ 345 (490)
+..+...|...|++++|..+++++.. . ....+..++..|...|++++|...+++.... .. .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 56677777777777777777665431 1 1235666777777777777777777766532 11 11 1 23
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
.+..+...+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455556666777788887777766654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.2e-05 Score=74.88 Aligned_cols=167 Identities=10% Similarity=-0.021 Sum_probs=125.6
Q ss_pred HHHHHHHhccCC---CCeehHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC--c
Q 042265 295 NTAIEIFESSQE---KNLFTWNAMLVGLAMHGL----------GRLSLVYFSRMIEARIKPDGVTILGALVGCSHAG--L 359 (490)
Q Consensus 295 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~ 359 (490)
++|++.++++.. .+..+|+.--.++...|+ ++++++.++++.+...+ +..+|..-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccccc
Confidence 344555554442 133345544444444444 78888888888876433 5667777667777778 7
Q ss_pred HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcC-CHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhc-----------
Q 042265 360 VDEARKLFDEMESVYGVSKELKHYGCMADLLGRAG-LIEEALEMIKKMPMG-G-DVFVWSGLLGGCRIH----------- 425 (490)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~----------- 425 (490)
++++.+.++++.+ ..+.+...|+.-..++.+.| .++++++.++++... | +...|+.....+...
T Consensus 125 ~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 7999999999998 45667788888888888888 889999998886643 4 888888888776653
Q ss_pred ---CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHH
Q 042265 426 ---GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWED 464 (490)
Q Consensus 426 ---~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 464 (490)
+.++++++.+++++..+|++..+|..+...+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888555
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.4e-07 Score=67.80 Aligned_cols=84 Identities=24% Similarity=0.175 Sum_probs=67.2
Q ss_pred hcCCHHHHHHHHhhCCCC----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHH
Q 042265 392 RAGLIEEALEMIKKMPMG----G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
..|++++|+..|++.... | +...+..+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357788888888876544 4 66778888888999999999999999999999999889999999999999999999
Q ss_pred HHHHHHhcC
Q 042265 467 KIRRSLDAG 475 (490)
Q Consensus 467 ~~~~~m~~~ 475 (490)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 998887654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.18 E-value=1e-05 Score=59.06 Aligned_cols=64 Identities=25% Similarity=0.265 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
++..+..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778888888888899999999999999999998888889999999999999999988887764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-05 Score=76.87 Aligned_cols=124 Identities=12% Similarity=0.033 Sum_probs=97.5
Q ss_pred HhhccCcHHHHHHHHHHhHHhhC--CCC----CchHHHHHHhhhhhcCCHHHHHHHHhhCC---------CCC-CHHHHH
Q 042265 353 GCSHAGLVDEARKLFDEMESVYG--VSK----ELKHYGCMADLLGRAGLIEEALEMIKKMP---------MGG-DVFVWS 416 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~ 416 (490)
.+..+|++++|+.++++..+... +.+ ...+++.|..+|...|++++|..++++.. .+| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578999999998888766421 222 23567888999999999999988887642 233 456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCCch---HHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 417 GLLGGCRIHGNVEIAEAAAEHVMK-----LKPEDGGV---YKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 417 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.|...|..+|++++|+.+++++++ +.|+++.+ ...+..++...|++++|..++++++++-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 67888754 4577788889999999999999998643
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=9.3e-06 Score=64.90 Aligned_cols=131 Identities=11% Similarity=-0.013 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC----chH
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEARI-KPD----GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE----LKH 382 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 382 (490)
+..+...+...|++++|+..+++..+... .++ ..++..+...+...|++++|...+++..+.....++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444555555556665555555443210 011 134555666666777777777777766543111111 334
Q ss_pred HHHHHhhhhhcCCHHHHHHHHhhCC----CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 042265 383 YGCMADLLGRAGLIEEALEMIKKMP----MGG----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK 442 (490)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 442 (490)
+..+...+...|++++|.+.+++.. ..+ ....+..+...+...|++++|.+.++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666677777777777777776543 111 34567778888899999999999999988743
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.5e-05 Score=60.83 Aligned_cols=112 Identities=8% Similarity=-0.138 Sum_probs=71.2
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 042265 358 GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEA 433 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 433 (490)
+++++|.+.|++..+. + .+. .. |...|...+.+++|.++|++....+++..+..+...|.. .+++++|.+
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4566666666666653 3 222 22 555666666666677666665555666666667766666 667777777
Q ss_pred HHHHHHhhCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHhcCCC
Q 042265 434 AAEHVMKLKPEDGGVYKVLADVYAN----ADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 434 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 477 (490)
+++++.+. .++.++..|+..|.. .+++++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777664 344566777777776 6677777777777666653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=6.1e-07 Score=66.99 Aligned_cols=93 Identities=11% Similarity=0.000 Sum_probs=73.8
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------CchHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED------GGVYK 450 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 450 (490)
+...+..+...+...|++++|.+.+++.. ..| +...+..+..++...|++++|+..++++++..|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34556677777888888888888887753 233 78888899999999999999999999999999998 66778
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 042265 451 VLADVYANADRWEDVVKIRRS 471 (490)
Q Consensus 451 ~l~~~~~~~g~~~~A~~~~~~ 471 (490)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877777655543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.10 E-value=5.4e-06 Score=65.14 Aligned_cols=116 Identities=14% Similarity=0.006 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-C-----CH-----HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIK-P-----DG-----VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE 379 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~-p-----~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 379 (490)
.+......+.+.|++++|+..|++.++.... | +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l------ 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY------ 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 4556677788999999999999999885322 1 11 14555555555555555555555554431
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhh-CCCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKK-MPMGG-DVFVW----SGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
|++ ....| +...| .....++...|++++|+..|++++++.|.+......+.
T Consensus 87 -----------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 87 -----------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp -----------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred -----------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 111 12244 56677 88999999999999999999999999999887665554
Q ss_pred HH
Q 042265 454 DV 455 (490)
Q Consensus 454 ~~ 455 (490)
.+
T Consensus 144 ~~ 145 (159)
T 2hr2_A 144 RM 145 (159)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.07 E-value=9.5e-06 Score=74.21 Aligned_cols=152 Identities=13% Similarity=-0.043 Sum_probs=83.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 042265 278 SFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA 357 (490)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 357 (490)
...+..+...+.+.|++++|...|++....++... .+...++.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34577788889999999999999998664322211 1222333333332221 13677788888999
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHH-HHhcCCHHHHHHH
Q 042265 358 GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGG-CRIHGNVEIAEAA 434 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~-~~~~~~~~~a~~~ 434 (490)
|++++|...++++.+ ..+.+...+..+..+|...|++++|...|++... .| +...+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 3456778888999999999999999999998753 34 55566666655 3455677888999
Q ss_pred HHHHHhhCCCCC
Q 042265 435 AEHVMKLKPEDG 446 (490)
Q Consensus 435 ~~~~~~~~p~~~ 446 (490)
++++....|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999888765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.2e-05 Score=58.82 Aligned_cols=79 Identities=11% Similarity=0.049 Sum_probs=38.4
Q ss_pred HHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 363 ARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
|...|++..+ ..+.+...+..+...|...|++++|...+++.. ..| +...|..+..++...|++++|+..++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444444 223344445555555555555555555554432 112 444555555555555555555555555555
Q ss_pred hCC
Q 042265 441 LKP 443 (490)
Q Consensus 441 ~~p 443 (490)
..|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.01 E-value=8.8e-06 Score=78.18 Aligned_cols=84 Identities=14% Similarity=0.061 Sum_probs=39.9
Q ss_pred HHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHH
Q 042265 288 YAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEAR 364 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 364 (490)
+.+.|++++|.+.|++..+ .+...|..+..++.+.|++++|++.+++..+... .+...+..+..++...|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 4444555555555544332 1334444455555555555555555555544321 13344444444455555555555
Q ss_pred HHHHHhHH
Q 042265 365 KLFDEMES 372 (490)
Q Consensus 365 ~~~~~~~~ 372 (490)
+.|+++.+
T Consensus 95 ~~~~~al~ 102 (477)
T 1wao_1 95 RDYETVVK 102 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.01 E-value=1.3e-05 Score=56.96 Aligned_cols=81 Identities=15% Similarity=0.227 Sum_probs=60.5
Q ss_pred chHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHH
Q 042265 380 LKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYA 457 (490)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 457 (490)
...+..+...+...|++++|...+++.. ..| +...+..+...+...|++++|+..++++++..|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3455566667777777777777776643 222 67777888888888888999999999988888888888888888776
Q ss_pred hcC
Q 042265 458 NAD 460 (490)
Q Consensus 458 ~~g 460 (490)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.00 E-value=1.5e-05 Score=73.82 Aligned_cols=113 Identities=5% Similarity=-0.066 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC-CHHHHHHHHHHH
Q 042265 344 GVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG-DVFVWSGLLGGC 422 (490)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~ 422 (490)
...+..+...+.+.|++++|...|+++.+.. +. .. .....+++. ...| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~------~~----~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG------SR----AAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH------HH----HHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hc------Cc----cccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3456666677777888888888887776621 00 00 000111111 0112 667889999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 423 RIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.+.|++++|+..++++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=3.8e-06 Score=65.84 Aligned_cols=85 Identities=11% Similarity=0.055 Sum_probs=64.6
Q ss_pred hcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 042265 392 RAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGN----------VEIAEAAAEHVMKLKPEDGGVYKVLADVYANA 459 (490)
Q Consensus 392 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (490)
+.+++++|.+.+++.. ..| ++..|..+..++...++ +++|+..|+++++++|++..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 4445566666665533 233 66666666666665554 57999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHhcCC
Q 042265 460 D-----------RWEDVVKIRRSLDAGK 476 (490)
Q Consensus 460 g-----------~~~~A~~~~~~m~~~~ 476 (490)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999987653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1e-07 Score=87.06 Aligned_cols=251 Identities=12% Similarity=0.063 Sum_probs=182.4
Q ss_pred ChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHH
Q 042265 60 PLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLK 139 (490)
Q Consensus 60 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 139 (490)
++++|.+..++... +..|..|..+....++..+|++.|-+. -|+..|..++.++.+.|.++.-..++....+
T Consensus 40 ~ldRa~eyA~~~n~--p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCC--CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCC--ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34444444444433 467999999999999999998766332 3677899999999999999999998887766
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCC---------------
Q 042265 140 LGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMP--------------- 204 (490)
Q Consensus 140 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------- 204 (490)
.. .++.+=+.|+-+|++.++..+..+++ ..|+......+.+-|...|.++.|.-+|..+.
T Consensus 112 ~~--ke~~IDteLi~ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y 186 (624)
T 3lvg_A 112 KA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY 186 (624)
T ss_dssp TC--CSTTTTHHHHHHHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred Hh--cccccHHHHHHHHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 53 44455568999999999987654443 33666667788888999999999988887764
Q ss_pred ---------CCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 042265 205 ---------FRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIR 275 (490)
Q Consensus 205 ---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 275 (490)
..++.||-.+-.+|...+.+.-|.-.--.++- .|| ....++..|.+.|.+++-+.+++.-.... .
T Consensus 187 q~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-r 260 (624)
T 3lvg_A 187 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-R 260 (624)
T ss_dssp GSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-T
T ss_pred HHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-c
Confidence 12788999999999999998877655444432 222 12345666788899999888888776543 5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHhccCC----C-------CeehHHHHHHHHHHcCChHHHHH
Q 042265 276 VDSFLSTGLVDFYAKCGYINTAIEIFESSQE----K-------NLFTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 276 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~~ 330 (490)
....+|+.|.-.|++- ++++..+.++..-. | ....|.-++-.|.+-.+++.|..
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 6778888888888875 56666666654332 2 44578888888888888887654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.93 E-value=5.8e-05 Score=53.84 Aligned_cols=71 Identities=10% Similarity=0.041 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCCCCCc
Q 042265 411 DVFVWSGLLGGCRIHGN---VEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIKKNAG 482 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 482 (490)
++..+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+.... +|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 77788888888765544 699999999999999999999999999999999999999999999988655 554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00011 Score=70.07 Aligned_cols=121 Identities=9% Similarity=-0.125 Sum_probs=71.6
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 042265 208 AVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPD--------------NIALVSALSACARLGELEQGKNIHRYIELNQ 273 (490)
Q Consensus 208 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 273 (490)
...|..+...+.+.|++++|+..|++.++...... ...|..+..++.+.|++++|...++++.+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44677788888888888888888888876421111 3556666666666666666666666666654
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHH
Q 042265 274 IRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSL 329 (490)
Q Consensus 274 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 329 (490)
+.+...+..+..+|...|++++|+..|+++.+- +...+..+..++...++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555554431 3344444555555544444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00027 Score=54.90 Aligned_cols=112 Identities=11% Similarity=-0.066 Sum_probs=94.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh----cCCHHH
Q 042265 323 GLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR----AGLIEE 398 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 398 (490)
+++++|.+.|++..+.| .|... +...|...+.+++|.++|++..+. .++.....|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999887 34443 667777888899999999999884 456777788888887 899999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 042265 399 ALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 443 (490)
|.++|++....+++..+..+...|.. .++.++|..+++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999998777899999999999998 8999999999999988643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=8.6e-05 Score=54.92 Aligned_cols=66 Identities=8% Similarity=-0.036 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+...+..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788889999999999999999999999999999999999999999999999999999988654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00016 Score=69.16 Aligned_cols=127 Identities=8% Similarity=-0.058 Sum_probs=67.1
Q ss_pred HHhcCChhHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----CCCCChhhHHHHH
Q 042265 218 YAQSDQCEEAIQLFCNMMDL---DIKP----DNIALVSALSACARLGELEQGKNIHRYIELN-----QIRVDSFLSTGLV 285 (490)
Q Consensus 218 ~~~~g~~~~A~~~~~~m~~~---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~ 285 (490)
+..+|++++|+.++++.++. -+.| ...+++.|..+|...|++++|..++++.++. | +..+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~------ 391 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH-HNNAQ------ 391 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-TTCHH------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC-CCCHH------
Confidence 44567777777777665442 1111 1235566666666666666666666655432 1 11110
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHhhccC
Q 042265 286 DFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIE-----ARI-KPD-GVTILGALVGCSHAG 358 (490)
Q Consensus 286 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~~~-~p~-~~~~~~l~~~~~~~g 358 (490)
-..+++.|...|...|++++|+.++++..+ .|. .|+ ..+...+-.++...+
T Consensus 392 ----------------------~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 392 ----------------------LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 012344445555555555555555544432 221 121 234455556666778
Q ss_pred cHHHHHHHHHHhHHh
Q 042265 359 LVDEARKLFDEMESV 373 (490)
Q Consensus 359 ~~~~a~~~~~~~~~~ 373 (490)
.+++|+..|.++.+.
T Consensus 450 ~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 450 MFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888887663
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=3.2e-05 Score=60.66 Aligned_cols=109 Identities=9% Similarity=0.046 Sum_probs=64.5
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC----------HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhc
Q 042265 358 GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL----------IEEALEMIKKMP-MGG-DVFVWSGLLGGCRIH 425 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 425 (490)
+.+++|.+.++...+ -.+.+...|..+..++...++ +++|+..|++.. ..| +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445555555555554 233344555555555554443 346666666533 233 666777777777665
Q ss_pred -----------CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 426 -----------GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 426 -----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|++++|++.|+++++++|++. .|...+.. .++|.++.-.+...
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHHHHHHHHHS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHhccCccccc
Confidence 589999999999999999986 44333222 24455554444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00012 Score=51.76 Aligned_cols=65 Identities=12% Similarity=0.244 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+...+..+...+...|++++|+..++++++..|.++.++..++.++.+.|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45678888889999999999999999999999999999999999999999999999999998765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0004 Score=67.95 Aligned_cols=150 Identities=9% Similarity=-0.033 Sum_probs=120.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCc----------HHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh
Q 042265 323 GLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGL----------VDEARKLFDEMESVYGVSKELKHYGCMADLLGR 392 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (490)
...++|++.++++...... +...|+.--..+...|+ ++++.+.++.+.+ ..+.+..+|..-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3456789999999986322 34455555555555565 8999999999998 566778888888888888
Q ss_pred cC--CHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc--------
Q 042265 393 AG--LIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHG-NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA-------- 459 (490)
Q Consensus 393 ~g--~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------- 459 (490)
.| +++++++.++++.. .| +...|+.-...+.+.| .++++++.++++++.+|.+..+|+..+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 89 77999999998752 23 8999999888888889 899999999999999999999999999998874
Q ss_pred ------CChHHHHHHHHHHhcC
Q 042265 460 ------DRWEDVVKIRRSLDAG 475 (490)
Q Consensus 460 ------g~~~~A~~~~~~m~~~ 475 (490)
++++++.+.+++....
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHhh
Confidence 5578898888877653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.67 E-value=9.9e-05 Score=55.18 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=52.2
Q ss_pred HHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 399 ALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 399 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
|++.|++.. ..| +...+..+...+...|++++|+..++++++.+|++..++..++.+|...|++++|...+++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444432 223 6667777777777777777777777777777777777777777777777777777777776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00034 Score=65.70 Aligned_cols=82 Identities=15% Similarity=0.050 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHhhCC---------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCCc---hHHHHHH
Q 042265 393 AGLIEEALEMIKKMP---------MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK-----LKPEDGG---VYKVLAD 454 (490)
Q Consensus 393 ~g~~~~A~~~~~~~~---------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~ 454 (490)
.|++++|..++++.. .+| -..+++.++.+|...|++++|+.+++++++ ..|+++. +++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 466777776665431 122 346788888889999999999999999887 5566654 5778899
Q ss_pred HHHhcCChHHHHHHHHHHhc
Q 042265 455 VYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 455 ~~~~~g~~~~A~~~~~~m~~ 474 (490)
+|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999887653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00016 Score=52.22 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=59.0
Q ss_pred HHhhhhhcCCHHHHHHHHhhCC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 042265 386 MADLLGRAGLIEEALEMIKKMP-MGG-DVF-VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRW 462 (490)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (490)
....+.+.|++++|.+.+++.. ..| +.. .+..+..++...|++++|+..++++++.+|++..++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4556677888888888887754 233 667 88888888999999999999999999999998866632 445
Q ss_pred HHHHHHHHHH
Q 042265 463 EDVVKIRRSL 472 (490)
Q Consensus 463 ~~A~~~~~~m 472 (490)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5566555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00047 Score=64.81 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=61.2
Q ss_pred hhhhhcCCHHHHHHHHhhCCC---------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCCc---hH
Q 042265 388 DLLGRAGLIEEALEMIKKMPM---------GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK-----LKPEDGG---VY 449 (490)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~---------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~ 449 (490)
..+.+.|++++|+.++++... +| ...+++.++..|...|++++|+.+++++++ ..|+++. ++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 334466777777777765321 11 345677888888888888888888888876 4555553 57
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHh
Q 042265 450 KVLADVYANADRWEDVVKIRRSLD 473 (490)
Q Consensus 450 ~~l~~~~~~~g~~~~A~~~~~~m~ 473 (490)
+.|+.+|...|++++|..++++..
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 788888888888888888887765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00043 Score=49.89 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=54.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCc-hHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDGG-VYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.+..+...|++++|+..++++++..|+++. ++..++.+|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456688899999999999999999999998 99999999999999999999999987654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00045 Score=63.62 Aligned_cols=144 Identities=10% Similarity=0.002 Sum_probs=111.7
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY 112 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 112 (490)
..|.+|+.|...+. +.|.+.+|+..|=+. .|+..|..+|.+..+.|.+++-+..+.-.++.. -++.
T Consensus 52 n~p~VWs~LgkAqL----------~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~ 117 (624)
T 3lvg_A 52 NEPAVWSQLAKAQL----------QKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESY 117 (624)
T ss_dssp CCCCCSSSHHHHTT----------TSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTT
T ss_pred CCccHHHHHHHHHH----------ccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccc
Confidence 57889999999999 889999998877554 456788999999999999999999988777653 3444
Q ss_pred cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhc--------------------
Q 042265 113 SFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEI-------------------- 172 (490)
Q Consensus 113 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------------------- 172 (490)
.=+.|+-+|++.++..+.++++. .||..-...+.+-|...|.++.|.-+|..+
T Consensus 118 IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 118 VETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp TTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSST
T ss_pred cHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 55789999999998877655432 466666777888888888888888887766
Q ss_pred ----ccCCchhHHHHHHHHHhcCCHHHHH
Q 042265 173 ----LYRDVVSCNTLIDGYVKAGDLAHAR 197 (490)
Q Consensus 173 ----~~~~~~~~~~l~~~~~~~~~~~~a~ 197 (490)
...++.+|..+-.+|...+.+.-|.
T Consensus 191 daArKAns~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 191 DGARKANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp TTTTTCCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHHhcCChhHHHHHHHHHhCchHHHHHH
Confidence 1126778998888888777665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0012 Score=62.00 Aligned_cols=93 Identities=13% Similarity=-0.047 Sum_probs=70.3
Q ss_pred ccCcHHHHHHHHHHhHHhh--CCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCC---------CCC-CHHHHHHHH
Q 042265 356 HAGLVDEARKLFDEMESVY--GVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMP---------MGG-DVFVWSGLL 419 (490)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~~l~ 419 (490)
..|++++|+.++++..+.. -+.|+ ..+++.|..+|...|++++|..++++.. .+| ...+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578888888888776531 12222 3567888888888999999888887642 233 456789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----hCCCCCch
Q 042265 420 GGCRIHGNVEIAEAAAEHVMK-----LKPEDGGV 448 (490)
Q Consensus 420 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~ 448 (490)
..|..+|++++|+.+++++++ ..|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999988 67888743
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.037 Score=56.90 Aligned_cols=165 Identities=16% Similarity=0.062 Sum_probs=106.6
Q ss_pred HhccCCcHHHHH-HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHH
Q 042265 121 CSQLCSHSLAQT-IHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQL 199 (490)
Q Consensus 121 ~~~~~~~~~a~~-~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 199 (490)
....++++.|.+ ++.. + ++......++..+.+.|..+.|+++.+.- ..-.......|+++.|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHH
Confidence 344677777765 4311 1 11223367777788888888888765321 1223445678999999998
Q ss_pred HhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChh
Q 042265 200 FDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSF 279 (490)
Q Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 279 (490)
.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++.+.....|.
T Consensus 675 ~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----- 738 (814)
T 3mkq_A 675 LTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK----- 738 (814)
T ss_dssp HTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----
T ss_pred HHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-----
Confidence 87764 567899999999999999999999988743 33455555557777776666655555441
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHH
Q 042265 280 LSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSR 334 (490)
Q Consensus 280 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 334 (490)
++....+|.+.|++++|.+++. +.+++++|..+-+.
T Consensus 739 -~~~A~~~~~~~g~~~~a~~~~~------------------~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 739 -FNLAFNAYWIAGDIQGAKDLLI------------------KSQRFSEAAFLGST 774 (814)
T ss_dssp -HHHHHHHHHHHTCHHHHHHHHH------------------HTTCHHHHHHHHHH
T ss_pred -hHHHHHHHHHcCCHHHHHHHHH------------------HcCChHHHHHHHHH
Confidence 2334445666777777766554 45666666665443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0014 Score=47.34 Aligned_cols=61 Identities=15% Similarity=0.012 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 311 TWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 311 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
.+..+...+...|++++|+..|++..+.... +...|..+..++...|++++|.+.|++..+
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444444444444444444443211 233444444444445555555554444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.004 Score=58.49 Aligned_cols=100 Identities=14% Similarity=-0.024 Sum_probs=75.9
Q ss_pred HHHhhccCcHHHHHHHHHHhHHhh--CCCCC----chHHHHHHhhhhhcCCHHHHHHHHhhCC---------CCC-CHHH
Q 042265 351 LVGCSHAGLVDEARKLFDEMESVY--GVSKE----LKHYGCMADLLGRAGLIEEALEMIKKMP---------MGG-DVFV 414 (490)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~ 414 (490)
+..+...|++++|+..+++..+.. -+.|+ ..+++.++.+|...|++++|+.++++.. .+| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444567789999999988887531 12232 3467888888999999999988887642 233 4567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCCchHH
Q 042265 415 WSGLLGGCRIHGNVEIAEAAAEHVMK-----LKPEDGGVYK 450 (490)
Q Consensus 415 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 450 (490)
++.+...|...|++++|+.+++++++ ..|+++.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 88999999999999999999999988 6888875443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0053 Score=55.37 Aligned_cols=64 Identities=11% Similarity=0.008 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++.++..+...+...|++++|+..+++++.++|+ ...|..++.++.-.|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5555555555555556666666666666665543 334455566666666666666666555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.02 Score=51.61 Aligned_cols=75 Identities=15% Similarity=0.022 Sum_probs=62.0
Q ss_pred CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 375 GVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
..+.++..|..+...+...|++++|...++++. ..|+...|..+...+.-.|++++|.+.++++..++|..+ +|.
T Consensus 272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~ 347 (372)
T 3ly7_A 272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLY 347 (372)
T ss_dssp GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHH
T ss_pred cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHH
Confidence 346677788888777777899999999998854 346777887888889999999999999999999999765 544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0042 Score=53.65 Aligned_cols=87 Identities=16% Similarity=0.070 Sum_probs=61.4
Q ss_pred HHHHHHHhhCC-CCC---CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCC-CchHHHHHHHHHhc-CChHHH
Q 042265 397 EEALEMIKKMP-MGG---DVFVWSGLLGGCRI-----HGNVEIAEAAAEHVMKLKPED-GGVYKVLADVYANA-DRWEDV 465 (490)
Q Consensus 397 ~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 465 (490)
..|...+++.. ..| +...|..++..|.. -|+.++|.++|+++++++|+. ..++...+..++.. |+.++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 44555555532 233 35566677777776 388888888888888888864 78888888888774 888888
Q ss_pred HHHHHHHhcCCCCCCCce
Q 042265 466 VKIRRSLDAGKIKKNAGC 483 (490)
Q Consensus 466 ~~~~~~m~~~~~~~~~~~ 483 (490)
.+.+++..+.....+|+.
T Consensus 260 ~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 260 DEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHcCCCCCCCCh
Confidence 888888887766655553
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.46 Score=46.55 Aligned_cols=114 Identities=11% Similarity=-0.069 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 323 GLGRLSLVYFSRMIEARIKPDGVT----ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
.+.+.|...+........ .+... ...+.......+...++...+...... ..+.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 477888888877765332 22222 222333334445344555555554332 2333333344444556788888
Q ss_pred HHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 399 ALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 399 A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
|...|+.|...+ ...-..=+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888887543 344344456667778888888888888865
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0049 Score=44.83 Aligned_cols=70 Identities=13% Similarity=0.015 Sum_probs=50.2
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHH
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP---------MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLA 453 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 453 (490)
..+...+.+.|+++.|..+|+... ..+...++..+..++.+.|+++.|...++++++..|+++.+...+.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 345555555555555555554422 1125678889999999999999999999999999999986655543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0048 Score=47.74 Aligned_cols=90 Identities=13% Similarity=-0.032 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcC---CHHHHHHHHhhCCCC--C--CHHHHHHHHHHHHhcCCHHHH
Q 042265 359 LVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAG---LIEEALEMIKKMPMG--G--DVFVWSGLLGGCRIHGNVEIA 431 (490)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a 431 (490)
....+++-|.+..+ .-+++..+...+..++++.+ +.++++.+|+++... | ....+..+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 34455555555544 23356666666666676666 455677776664422 2 345667778889999999999
Q ss_pred HHHHHHHHhhCCCCCchHH
Q 042265 432 EAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~~~~~ 450 (490)
.+.++.+++.+|++..+..
T Consensus 91 ~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 9999999999998874443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.059 Score=55.42 Aligned_cols=155 Identities=16% Similarity=0.136 Sum_probs=83.8
Q ss_pred HHHHhcCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 042265 216 AGYAQSDQCEEAIQ-LFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYI 294 (490)
Q Consensus 216 ~~~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (490)
......+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 33445666776655 3311 1 1122235555666666777776655421 11 112334567788
Q ss_pred HHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhh
Q 042265 295 NTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVY 374 (490)
Q Consensus 295 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (490)
+.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+.....
T Consensus 669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~- 736 (814)
T 3mkq_A 669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT- 736 (814)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 88888776653 456788888888888888888888877642 223333344455555544444443332
Q ss_pred CCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC
Q 042265 375 GVSKELKHYGCMADLLGRAGLIEEALEMIKKM 406 (490)
Q Consensus 375 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (490)
+ .++....+|.+.|++++|.+++.++
T Consensus 737 ~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 737 G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1 1223333445556666665555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.15 Score=38.07 Aligned_cols=141 Identities=9% Similarity=-0.001 Sum_probs=101.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
+.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+.+.+. .+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHH
Confidence 34568888888888877763 355667777776666677777777777776533222 3444444
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 042265 399 ALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 478 (490)
....+-.+.. +....+..+..+..+|+-+.-.+++..++.-.|.++.....++.+|.+.|+..+|.+++++.-+.|++
T Consensus 80 Vi~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4444444332 44556667778889999999999999987777777889999999999999999999999999988875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0037 Score=48.41 Aligned_cols=80 Identities=10% Similarity=-0.097 Sum_probs=64.7
Q ss_pred HHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC-C-CCCchHHHHHHHHHhcCChHHHHHH
Q 042265 396 IEEALEMIKKMP--MGGDVFVWSGLLGGCRIHG---NVEIAEAAAEHVMKLK-P-EDGGVYKVLADVYANADRWEDVVKI 468 (490)
Q Consensus 396 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 468 (490)
...+.+.|.+.. ..++..+...+..++.+.+ +.++++.+++...+.+ | ++...++.|+.+|.+.|++++|.++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 344455554432 2348899999999999988 6679999999999987 7 5677899999999999999999999
Q ss_pred HHHHhcC
Q 042265 469 RRSLDAG 475 (490)
Q Consensus 469 ~~~m~~~ 475 (490)
++.+.+.
T Consensus 94 ~~~lL~i 100 (152)
T 1pc2_A 94 VRGLLQT 100 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9998754
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.026 Score=39.83 Aligned_cols=70 Identities=9% Similarity=-0.073 Sum_probs=54.7
Q ss_pred CCCchHHHHHHhhhhhcCC---HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 377 SKELKHYGCMADLLGRAGL---IEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
+.++..+..+..++...++ .++|..++++.. ..| ++.....+...+.+.|++++|+..|+++++.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4566677777777754444 688888888754 333 888888889999999999999999999999888844
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.014 Score=42.28 Aligned_cols=65 Identities=9% Similarity=-0.060 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLK-------PEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++.-...++..+.+.|+++.|+..++++++.. +....++..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34556778888999999999999999999832 234567899999999999999999999988754
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.34 Score=38.44 Aligned_cols=98 Identities=10% Similarity=0.112 Sum_probs=46.5
Q ss_pred hcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 042265 189 KAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRY 268 (490)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 268 (490)
+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|...|+.++...+-+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 344555554444433 2344566666666666666666666655432 22333334445555554444444
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhc
Q 042265 269 IELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFES 303 (490)
Q Consensus 269 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 303 (490)
....| -++.....+.-.|+++++.++|.+
T Consensus 86 A~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 86 AQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43333 123333334445555555555543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.094 Score=38.94 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=63.7
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH---HHHHHhhCCCCC----CHHHHHHHHHHHHhcCCHHH
Q 042265 358 GLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE---ALEMIKKMPMGG----DVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 430 (490)
.....+.+-|.+.... +. ++..+--.+..++.+.....+ ++.+++++.... .......+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445555666655553 33 666666667777777776665 777887765443 23445567778999999999
Q ss_pred HHHHHHHHHhhCCCCCchHH
Q 042265 431 AEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 431 a~~~~~~~~~~~p~~~~~~~ 450 (490)
|.+.++.+++..|++..+..
T Consensus 93 A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH
Confidence 99999999999999875543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.38 Score=35.93 Aligned_cols=147 Identities=11% Similarity=-0.073 Sum_probs=93.2
Q ss_pred cHHHHHHH--HhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC-CchhHHHHHHHHHh
Q 042265 113 SFPFLLRA--CSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR-DVVSCNTLIDGYVK 189 (490)
Q Consensus 113 ~~~~ll~~--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~ 189 (490)
+...|+.+ ..-.|..++..++..+...+. +..-+|-+|--....-+-+-..++++.+-+. |. ..
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~ 73 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DK 73 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GG
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------Hh
Confidence 34444444 234467777777766666532 3344444444444445555555555554222 21 23
Q ss_pred cCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 042265 190 AGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYI 269 (490)
Q Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 269 (490)
+|++......+-.+.. +....+..+.....+|.-++-.+++.++... .+|++.....+..+|.+.|+..++.+++.++
T Consensus 74 C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 4555555555555432 4556677778888889999888888886543 4778888888889999999999999999888
Q ss_pred HHcCC
Q 042265 270 ELNQI 274 (490)
Q Consensus 270 ~~~~~ 274 (490)
.+.|+
T Consensus 152 C~kG~ 156 (172)
T 1wy6_A 152 CKKGE 156 (172)
T ss_dssp HHTTC
T ss_pred HHhhh
Confidence 88875
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.064 Score=53.55 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=50.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 418 LLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 418 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
-...|...|+++.|+.+.++++..-|.+..+|..|+.+|...|+|+.|+-.+..+
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445778899999999999999999999999999999999999999999999887
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.96 Score=35.87 Aligned_cols=44 Identities=14% Similarity=0.343 Sum_probs=21.4
Q ss_pred hcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHH
Q 042265 290 KCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRM 335 (490)
Q Consensus 290 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 335 (490)
..|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344455554444433 23344555555555555555555555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.70 E-value=4.4 Score=41.51 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcc
Q 042265 149 LNSLMHVYCVFHRLRDAQELFDEIL 173 (490)
Q Consensus 149 ~~~li~~~~~~g~~~~A~~~~~~~~ 173 (490)
|..+++++.+.++.+.+.++|.++.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666677777777777777764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.067 Score=49.41 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhc-----CCCCCCCce
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDA-----GKIKKNAGC 483 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 483 (490)
....++..+...|++++++..++.+...+|-+...+..++.+|.+.|+..+|.+.|+++.+ .|+.|.|.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455677788899999999999999999999988999999999999999999999988753 488887754
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=94.52 E-value=1.6 Score=35.58 Aligned_cols=158 Identities=12% Similarity=-0.005 Sum_probs=74.8
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQ 136 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (490)
...+...--.+++.+..++...-...+..+.+.+..+....+.+.+ . .++...-...+.++...++.+.. ..+..
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~ 83 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDERAV-EPLIK 83 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGGGH-HHHHH
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHHHH-HHHHH
Confidence 4444455555555556666666666667776666544333333333 2 24444444455555555544332 22222
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHH
Q 042265 137 VLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVA 216 (490)
Q Consensus 137 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 216 (490)
+.. .++..+-...+.++.+.++.+....+.+.+..++...-...+.++.+.++.+....+...+..++...-...+.
T Consensus 84 ~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~ 160 (201)
T 3ltj_A 84 ALK---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAAD 160 (201)
T ss_dssp HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHc---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 35555666666666666654433333343344444444444555554444333333333333333333333333
Q ss_pred HHHhcC
Q 042265 217 GYAQSD 222 (490)
Q Consensus 217 ~~~~~g 222 (490)
++.+.|
T Consensus 161 aL~~~~ 166 (201)
T 3ltj_A 161 ALGEIG 166 (201)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 333333
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.08 Score=39.33 Aligned_cols=67 Identities=12% Similarity=-0.119 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 409 GGDVFVWSGLLGGCRIHGNVEI---AEAAAEHVMKLK-P-EDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.++..+-..+..++.+..+... ++.+++...+.. | ........|+.++.+.|+|++|.+.++.+.+.
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3578888889999999887766 899999988866 5 45567889999999999999999999988754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.65 Score=43.65 Aligned_cols=248 Identities=10% Similarity=0.027 Sum_probs=130.6
Q ss_pred CChhHHHHhhccCC---------CCCcccHHHHHHHHHcCCCchhHHHHHHHhhhC-CCCCCcccHHHHHHHH----hcc
Q 042265 59 DPLSYALSIFNNIP---------YPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTV-SIPPDFYSFPFLLRAC----SQL 124 (490)
Q Consensus 59 g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~----~~~ 124 (490)
|+++.|++.+-.+. .........++..+...|+++...+.+..+.+. |..+. ....+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 66777777663332 123445667888888888888887777666543 32221 222333322 222
Q ss_pred CCcHHHH--HHHHHHHH--hC-CCC---chhHHHHHHHHHHhcCChHHHHHHHHhccc----C-----CchhHHHHHHHH
Q 042265 125 CSHSLAQ--TIHSQVLK--LG-FIC---DVFVLNSLMHVYCVFHRLRDAQELFDEILY----R-----DVVSCNTLIDGY 187 (490)
Q Consensus 125 ~~~~~a~--~~~~~~~~--~g-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~l~~~~ 187 (490)
...+... .+.+.+.. .| +.. .......|...+...|++.+|..++..+.. . -...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222211 11111100 11 111 122345677888888888888888888732 1 123566677778
Q ss_pred HhcCCHHHHHHHHhhCCC-----C-C----eehHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHH----HHHHH
Q 042265 188 VKAGDLAHARQLFDRMPF-----R-D----AVSWGTLVAGYAQSDQCEEAIQLFCNMMDL-DIKPDNIALV----SALSA 252 (490)
Q Consensus 188 ~~~~~~~~a~~~~~~~~~-----~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~----~l~~~ 252 (490)
...+|+..|..++.++.. + + ...+...+..+...+++.+|.+.|.+..+. ....|...+. .++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 888888888887776531 1 1 234566677777888888888877776542 1111222111 11111
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc--CCHHHHHHHHhccCCCC
Q 042265 253 CARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKC--GYINTAIEIFESSQEKN 308 (490)
Q Consensus 253 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~ 308 (490)
..-.+....-..+.........-++...+..++.+|... .+++...+.|+....++
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 111111111122222222222234566777777777654 45677777777655543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.70 E-value=0.46 Score=36.31 Aligned_cols=110 Identities=9% Similarity=0.018 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHhhccCcH------HHHHHHHHHhHHhhCCCCCchH-HHHHHh------hhhhcCCHHHHHHHHhhCC--
Q 042265 343 DGVTILGALVGCSHAGLV------DEARKLFDEMESVYGVSKELKH-YGCMAD------LLGRAGLIEEALEMIKKMP-- 407 (490)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~-~~~l~~------~~~~~g~~~~A~~~~~~~~-- 407 (490)
|..+|-..+....+.|++ ++..++|+++.. .++|+... +...+. .+...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344555555555555555 566666666666 45554311 111111 1123367777777776653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHH
Q 042265 408 MGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 408 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
.+.-+..|-.....-.++|+.+.|.+++.+++...|.+...+...+.
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 22246677777777788999999999999999988876655554443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.5 Score=40.88 Aligned_cols=65 Identities=14% Similarity=0.011 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHcCC
Q 042265 210 SWGTLVAGYAQS-----DQCEEAIQLFCNMMDLDIKPDNIALVSALSACARL-GELEQGKNIHRYIELNQI 274 (490)
Q Consensus 210 ~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~ 274 (490)
.|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.+.+.+.+++......
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 455555555552 55666666666555532111244444455555543 555555555555555543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.38 E-value=0.62 Score=35.62 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=74.8
Q ss_pred CCCCcccHHHHHHHHHcCCCc------hhHHHHHHHhhhCCCCCCcc-cHHHHHHH------HhccCCcHHHHHHHHHHH
Q 042265 72 PYPSTFSYNTIIRAHTLFSSP------LNAVVLFSQMRTVSIPPDFY-SFPFLLRA------CSQLCSHSLAQTIHSQVL 138 (490)
Q Consensus 72 ~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~-~~~~ll~~------~~~~~~~~~a~~~~~~~~ 138 (490)
.+.|..+|-..+..+-+.|++ ++..++|++.... ++|+.. .|...+.. +...++.++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356788999999998888999 8899999988874 566542 22222211 123379999999999998
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc
Q 042265 139 KLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY 174 (490)
Q Consensus 139 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 174 (490)
+.+ +.=..+|......-.+.|++..|.+++.+...
T Consensus 88 ~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 88 ANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 763 33377888888888899999999999988744
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.01 E-value=0.5 Score=33.10 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 324 LGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 324 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++++.++.+ ..+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHHH
Confidence 44566777777878889999999999999999999999999999999885 33345567776653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.47 E-value=1.6 Score=33.10 Aligned_cols=72 Identities=11% Similarity=0.059 Sum_probs=48.1
Q ss_pred CCCchHHHHHHhhhhhcCCHH---HHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 042265 377 SKELKHYGCMADLLGRAGLIE---EALEMIKKMP-MGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV 448 (490)
Q Consensus 377 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 448 (490)
.|+..+--.+..++.+....+ +++.+++++. ..| .......+.-++.+.|++++|.++.+.+++..|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 466666666667777666554 4666666643 222 33445556677888888888888888888888887633
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=92.45 E-value=3.8 Score=33.53 Aligned_cols=121 Identities=14% Similarity=-0.015 Sum_probs=48.0
Q ss_pred HHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCC
Q 042265 64 ALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFI 143 (490)
Q Consensus 64 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 143 (490)
...+.+.+..++...-...+..+.+.|..+....+ ..+... +|...-...+.++...++.+.. ..+..+.. .
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L-~~~l~~---~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~ 92 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPL-IKALKD---EDAWVRRAAADALGQIGDERAV-EPLIKALK---D 92 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHH-HHHTTC---SCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---C
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHH-HHHHcC---CCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---C
Confidence 33333444445544444555555555543322222 222221 3443334444444444433222 22222221 3
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCC
Q 042265 144 CDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGD 192 (490)
Q Consensus 144 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (490)
++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.++
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 4444444455555555443333333333333344343344444444443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=91.92 E-value=11 Score=38.63 Aligned_cols=263 Identities=12% Similarity=0.007 Sum_probs=128.5
Q ss_pred HHcCCCchhHHHHHHHhhhCCCCCCccc--HHHHHHHHhccCCcHHHHHHHHHHHHhCC-------CCchhHHHHHHHHH
Q 042265 86 HTLFSSPLNAVVLFSQMRTVSIPPDFYS--FPFLLRACSQLCSHSLAQTIHSQVLKLGF-------ICDVFVLNSLMHVY 156 (490)
Q Consensus 86 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-------~~~~~~~~~li~~~ 156 (490)
....|+.++++.++......+...+... =..+.-+....|..+.+..++...+...- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456666667666655443210112111 11222233445555567776666554321 01111222233333
Q ss_pred HhcCC-hHHHHHHHHhccc-CCchh--HH--HHHHHHHhcCCHHHHHHHHhhCCCC-Ceeh--HHHHHHHHHhcCChhHH
Q 042265 157 CVFHR-LRDAQELFDEILY-RDVVS--CN--TLIDGYVKAGDLAHARQLFDRMPFR-DAVS--WGTLVAGYAQSDQCEEA 227 (490)
Q Consensus 157 ~~~g~-~~~A~~~~~~~~~-~~~~~--~~--~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--~~~l~~~~~~~g~~~~A 227 (490)
+-.|. -+++.+.+..+.. .+..+ .. ++...+.-.|+-+....++..+.+. +... ...+.-++...|+.+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 33343 2345555555443 33221 11 2233344567777666666654322 2222 23334445577888888
Q ss_pred HHHHHHHHhCCCCCCHHHHH---HHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhcc
Q 042265 228 IQLFCNMMDLDIKPDNIALV---SALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 228 ~~~~~~m~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
..+.+.+.... .|. .-|. .+.-+|+-.|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+
T Consensus 544 ~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 544 DDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp HHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 88888877632 222 2232 33446677888877777888877653 223332233333444466666677777655
Q ss_pred CC-CCeehHH--HHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 042265 305 QE-KNLFTWN--AMLVGLAMHGLG-RLSLVYFSRMIEARIKPDGVTILGALVGC 354 (490)
Q Consensus 305 ~~-~~~~~~~--~l~~~~~~~~~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 354 (490)
.+ .|+.+-. .+..+....|.. .+++.++..+.. .++..+-...+.++
T Consensus 621 ~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 621 SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 43 3433322 233333444443 567778888764 34555444433333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.80 E-value=1.1 Score=34.88 Aligned_cols=25 Identities=8% Similarity=-0.116 Sum_probs=13.3
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHhH
Q 042265 347 ILGALVGCSHAGLVDEARKLFDEME 371 (490)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (490)
+..+.+++...+++..|...|++..
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3444455555555555555555543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.75 E-value=0.6 Score=34.82 Aligned_cols=70 Identities=10% Similarity=0.035 Sum_probs=39.7
Q ss_pred CCchHHHHHHhhhhhcCCH---HHHHHHHhhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc
Q 042265 378 KELKHYGCMADLLGRAGLI---EEALEMIKKMP-MGG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG 447 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 447 (490)
|++.+--.+..++.+.... .+++.+++++. ..| ....+.-+.-++.+.|++++|.+..+.+++..|++..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4444444455555555444 34555555543 222 2344555666677777777777777777777777653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.59 Score=36.46 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH
Q 042265 447 GVYKVLADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 447 ~~~~~l~~~~~~~g~~~~A~~~~~~m 472 (490)
..-..++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 46677999999999999999999865
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.07 E-value=6.7 Score=41.94 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcc
Q 042265 282 TGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 282 ~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
-.+..+|...|++++|.+.|++.
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 33455555666666666666554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.45 E-value=1.2 Score=33.11 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 324 LGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 324 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
|.-+..+-++.+....+.|++......+++|.+.+|+..|.++++.++.+ ..+....|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 34456666777777889999999999999999999999999999999985 44445667777653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.36 E-value=8.8 Score=33.71 Aligned_cols=167 Identities=13% Similarity=0.081 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCCHHHHHHHHHHHHcc
Q 042265 181 NTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQL----FCNMMDLDIKPDNIALVSALSACARL 256 (490)
Q Consensus 181 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~~~~~ 256 (490)
.++..-|.+.+++++|++++.. -...+.+.|++..|-++ ++-..+.+++++......++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3445556666777777666533 23345556776655553 44555667888888777777776553
Q ss_pred CChH-HHHHHHHHH----HHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHc---CChH
Q 042265 257 GELE-QGKNIHRYI----ELNQ--IRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMH---GLGR 326 (490)
Q Consensus 257 ~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 326 (490)
...+ .-.++.+.+ .+.| ..-++.....+...|.+.|++.+|+..|-.....++..+..++--+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 3211 112233333 3332 2346788889999999999999999988633322344444444333332 3222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHh
Q 042265 327 LSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESV 373 (490)
Q Consensus 327 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (490)
++ +...-..++. |.-.|+...|..+++...+.
T Consensus 186 e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 TV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred hH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 22 1112222333 44578999999998887654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.20 E-value=11 Score=34.49 Aligned_cols=90 Identities=17% Similarity=0.056 Sum_probs=50.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHccCChHHHHHHHHHHHHc--CCCCChhhHH---
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPD-----NIALVSALSACARLGELEQGKNIHRYIELN--QIRVDSFLST--- 282 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~--- 282 (490)
-++..|...|++.+|.+++.++.+.--..| ...+..-+..|...+++.++...+...... .+.+++.+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 466777778888888777777765311111 123444556667777777777777666543 2223332221
Q ss_pred -HHHHHHH-hcCCHHHHHHHHh
Q 042265 283 -GLVDFYA-KCGYINTAIEIFE 302 (490)
Q Consensus 283 -~l~~~~~-~~~~~~~A~~~~~ 302 (490)
.-...+. ..+++..|...|-
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ 205 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFY 205 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHH
Confidence 1222344 5677777766553
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=89.76 E-value=7.2 Score=31.81 Aligned_cols=18 Identities=6% Similarity=-0.081 Sum_probs=8.2
Q ss_pred CchhHHHHHHHHHHhcCC
Q 042265 144 CDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 144 ~~~~~~~~li~~~~~~g~ 161 (490)
++..+-...+..+.+.|.
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444444444444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=89.23 E-value=11 Score=33.32 Aligned_cols=144 Identities=17% Similarity=0.093 Sum_probs=68.2
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhhccCc
Q 042265 284 LVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYF----SRMIEARIKPDGVTILGALVGCSHAGL 359 (490)
Q Consensus 284 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~m~~~~~~p~~~~~~~l~~~~~~~g~ 359 (490)
+..=|.+.+++++|++++-. -...+.+.|+...|.++. +-..+.+++++......++..+.....
T Consensus 41 i~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~ 109 (336)
T 3lpz_A 41 VAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQP 109 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence 33335556666666655422 122334445544443332 334445566666666555555543332
Q ss_pred --HHHHHHHHHHhHH---hhC--CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHH---------------
Q 042265 360 --VDEARKLFDEMES---VYG--VSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSG--------------- 417 (490)
Q Consensus 360 --~~~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------- 417 (490)
.+. ..+.+++.+ .+| ..-++.....+...|.+.+++.+|...|-- ...+++..+..
T Consensus 110 ~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~~s~~~~a~mL~ew~~~~~~~e~d 187 (336)
T 3lpz_A 110 GEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL-GTKESPEVLARMEYEWYKQDESHTAP 187 (336)
T ss_dssp TCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-SCTTHHHHHHHHHHHHHHTSCGGGHH
T ss_pred CCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-cCCchHHHHHHHHHHHHHhcCCccHH
Confidence 111 122222211 112 223555666667777777777777665521 11111122211
Q ss_pred -----HHHHHHhcCCHHHHHHHHHHHHh
Q 042265 418 -----LLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 418 -----l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.+--|...++...|..+++...+
T Consensus 188 lfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 188 LYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22225566788888877666554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.86 E-value=2.6 Score=29.58 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=41.2
Q ss_pred hhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 93 LNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 93 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
-+..+-++.+....+.|++....+.+++|-+.+++..|.++++.++..- .+...+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3455556666666777788888888888888888888888887766543 334455665543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.71 E-value=3.3 Score=41.48 Aligned_cols=55 Identities=11% Similarity=-0.129 Sum_probs=44.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccC
Q 042265 250 LSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQ 305 (490)
Q Consensus 250 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 305 (490)
...|...|+++-|..+-++..... |.+..+|..|..+|...|+++.|+-.++.++
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344567788888988888888775 6678888899999999999999988887765
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=88.20 E-value=21 Score=35.02 Aligned_cols=341 Identities=7% Similarity=-0.136 Sum_probs=164.3
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQ 136 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (490)
+.+++...+.++.. ++.+...-.....+....|+..+|....+.+-..| .........++..+
T Consensus 84 ~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~--------------- 146 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVW--------------- 146 (618)
T ss_dssp HTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHH---------------
T ss_pred hCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHH---------------
Confidence 45566666665554 33334334445555555666555555555554443 12222333333333
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC--CeehHHHH
Q 042265 137 VLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFR--DAVSWGTL 214 (490)
Q Consensus 137 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l 214 (490)
.+.| ..+....-.-+......|+...|..+...+..........++....+ ...+.......... +...+...
T Consensus 147 -~~~g-~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~ 221 (618)
T 1qsa_A 147 -RASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTGATDFTRQMAAVA 221 (618)
T ss_dssp -HHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSCCCHHHHHHHHHH
T ss_pred -HHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccCCChhhHHHHHHH
Confidence 3333 11221122223344445555555555555421111122333333222 22223333222111 11112222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042265 215 VAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALV----SALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK 290 (490)
Q Consensus 215 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 290 (490)
+.-+.+ .+.+.|...+....+.. ..+..... .+.......+...++...+...... ..+.......+....+
T Consensus 222 ~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr 297 (618)
T 1qsa_A 222 FASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALG 297 (618)
T ss_dssp HHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHH
T ss_pred HHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHH
Confidence 333333 37788988888876543 22333222 2222333445355666666654443 2344444555555667
Q ss_pred cCCHHHHHHHHhccCCCC---eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 291 CGYINTAIEIFESSQEKN---LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
.|+++.|...|+.+.... ....-=+..++...|+.++|..+|..+... .+ -|..+.. .+.|....
T Consensus 298 ~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lAa--~~Lg~~~~----- 365 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGEEYE----- 365 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTCCCC-----
T ss_pred CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHHH--HHcCCCCC-----
Confidence 899999999999887642 223344566777889999999999888642 12 2333322 12221000
Q ss_pred HHhHHhhCCCCC-ch-----HHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042265 368 DEMESVYGVSKE-LK-----HYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHV 438 (490)
Q Consensus 368 ~~~~~~~~~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 438 (490)
. ......+. .. .--.-+..+...|....|...+..+....+......+.......|.++.++....+.
T Consensus 366 --~-~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 366 --L-KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp --C-CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred --C-CCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 0 00000010 00 011224456677888888877776554445444445555566777777777655443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.99 E-value=3.5 Score=31.17 Aligned_cols=68 Identities=7% Similarity=-0.080 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 408 MGGDVFVWSGLLGGCRIHGNV---EIAEAAAEHVMKLKPE-DGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 408 ~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
..++..+--.+..++.+..+. .+++.+++...+..|. .......|+.++.+.|+|++|.++.+.+.+.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345667777777777766544 4677777777776663 3446667777888888888888877777554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.60 E-value=14 Score=32.44 Aligned_cols=147 Identities=10% Similarity=0.055 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHhhccC
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVY----FSRMIEARIKPDGVTILGALVGCSHAG 358 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~~~~~g 358 (490)
++..-|.+.+++++|.+++.. -...+.++|++..|-++ .+...+.+++++......++..+..-.
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 344446666777777766532 12334555665555443 444455677777777777766654422
Q ss_pred cHH-HHHHHHHHhHHh---hC--CCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC----------------CC--CCHHH
Q 042265 359 LVD-EARKLFDEMESV---YG--VSKELKHYGCMADLLGRAGLIEEALEMIKKMP----------------MG--GDVFV 414 (490)
Q Consensus 359 ~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------~~--~~~~~ 414 (490)
.-+ .-.++.+++.+- .+ ..-++.....+...|.+.|++.+|...|-.-. .. +.+..
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch
Confidence 100 112233333221 12 22356677778888888888888877553111 11 21111
Q ss_pred HH----HHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 415 WS----GLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 415 ~~----~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
.. ..+--|...|+...|..+++...+
T Consensus 187 ~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 187 VAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 11 112225567888888888887654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.39 E-value=3.9 Score=37.54 Aligned_cols=71 Identities=7% Similarity=-0.070 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCChhhHH
Q 042265 211 WGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIEL-----NQIRVDSFLST 282 (490)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 282 (490)
...++..+...|++++|...+..+.... +.+...+..+|.++.+.|+..+|...|+...+ .|+.|+..+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3456677778888888888888877653 45777888888888888988888888877644 47778776544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=86.47 E-value=3.1 Score=31.05 Aligned_cols=67 Identities=7% Similarity=-0.069 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhhCCC-CCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 409 GGDVFVWSGLLGGCRIHGNV---EIAEAAAEHVMKLKPE-DGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 409 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
.+++.+--.+..++.+..+. .+++.+++...+..|. ....+..|+.++.+.|++++|.++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34666666666666665543 4567777777666663 3455667777777777777777777766543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.32 E-value=21 Score=38.13 Aligned_cols=60 Identities=5% Similarity=-0.058 Sum_probs=32.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHhcc
Q 042265 245 ALVSALSACARLGELEQGKNIHRYIELNQIRVDS----FLSTGLVDFYAKCGYINTAIEIFESS 304 (490)
Q Consensus 245 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~ 304 (490)
-|..++..+.+.+..+.+.++-..+.+...+.+. ..|..+.+.+...|++++|...+-.+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 4555555666666666666555555543211111 14555566666666666666655444
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=86.21 E-value=12 Score=30.17 Aligned_cols=9 Identities=22% Similarity=0.099 Sum_probs=3.4
Q ss_pred HHHHHHHcC
Q 042265 315 MLVGLAMHG 323 (490)
Q Consensus 315 l~~~~~~~~ 323 (490)
.+.++...|
T Consensus 158 A~~aL~~~~ 166 (201)
T 3ltj_A 158 AADALGEIG 166 (201)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 333333333
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.89 E-value=7.9 Score=27.00 Aligned_cols=86 Identities=16% Similarity=0.073 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHH
Q 042265 258 ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIE 337 (490)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 337 (490)
..++|..|-+.+...+. ...+-.+-+..+.+.|++++|..+.+...-||...|-++.. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666666552 22222333446778899999999988888888888876644 477888888888777776
Q ss_pred CCCCCCHHHHH
Q 042265 338 ARIKPDGVTIL 348 (490)
Q Consensus 338 ~~~~p~~~~~~ 348 (490)
.| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 34444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.45 E-value=21 Score=31.59 Aligned_cols=165 Identities=13% Similarity=0.018 Sum_probs=92.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHccC
Q 042265 182 TLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLF----CNMMDLDIKPDNIALVSALSACARLG 257 (490)
Q Consensus 182 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~~~~~l~~~~~~~~ 257 (490)
++..-|.+.+++++|++++.. -...+.+.|+...+-++- +-+.+.++++|......++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 344556666666666665432 223344556655544443 44455677777777777777766554
Q ss_pred ChH-HHHHHHHHH----HHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHH
Q 042265 258 ELE-QGKNIHRYI----ELNQ--IRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLV 330 (490)
Q Consensus 258 ~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 330 (490)
.-+ .-..+.+.+ .+.| ..-|+.....+...|.+.+++.+|+..|--..++++..+..++--+...+...+
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e--- 185 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT--- 185 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG---
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc---
Confidence 321 112233332 2222 345677888899999999999999998853333333455444443333332211
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHH
Q 042265 331 YFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMES 372 (490)
Q Consensus 331 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (490)
++...-..++. |...++...|...++...+
T Consensus 186 -----------~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -----------APLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------HHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 12223333333 4457888888887777665
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.37 E-value=8.5 Score=26.91 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHH
Q 042265 258 ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIE 337 (490)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 337 (490)
..++|..|-+.+...+. ...+-.+-+..+.+.|++++|..+.+...-||...|-+|.. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45666666666665542 22222233445677888888888888888888888776644 366777777777767666
Q ss_pred CCCCCCHHHH
Q 042265 338 ARIKPDGVTI 347 (490)
Q Consensus 338 ~~~~p~~~~~ 347 (490)
.| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3343333
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.86 E-value=5.7 Score=29.59 Aligned_cols=60 Identities=15% Similarity=0.079 Sum_probs=43.0
Q ss_pred hHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 94 NAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 94 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
+..+-++.+...++.|++......+++|-+.+|+..|.++++-++..- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 445556666666778888888888888888888888888888876653 444556666654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.39 E-value=3.8 Score=34.92 Aligned_cols=58 Identities=24% Similarity=0.258 Sum_probs=47.9
Q ss_pred hhhhcCCHHHHHHHHhh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 389 LLGRAGLIEEALEMIKK-MPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.+.+.|++++|++.... ++..| |...-..++..++-.|++++|..-++...+++|...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 45678899999887754 66777 888888889999999999999999999999998644
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.21 E-value=38 Score=31.56 Aligned_cols=96 Identities=9% Similarity=-0.064 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHhhccCcHHHHHHHHHHhHHh-hCCCCCc----h
Q 042265 312 WNAMLVGLAMHGLGRLSLVYFSRMIEA--RIKPD---GVTILGALVGCSHAGLVDEARKLFDEMESV-YGVSKEL----K 381 (490)
Q Consensus 312 ~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~----~ 381 (490)
...|...+...|++.+|..++..+... |..+. ...+..-++.|...+++.+|..++.++... ....+++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 356778888999999999999988642 32222 235566777889999999999999987542 1222222 3
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP 407 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (490)
.+...+..+...+++.+|.+.|.++-
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55677778888999999988876653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 490 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.68 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.32 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.23 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.19 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.17 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.15 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.13 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.04 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.89 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.78 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.76 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.71 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.69 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.66 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.66 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.59 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.58 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.57 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.56 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.51 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.35 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.32 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.3 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.27 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.26 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.25 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.25 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.19 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.15 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.15 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.15 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.14 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.04 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.92 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.92 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.73 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.69 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.68 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.64 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.49 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.36 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.35 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.34 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.29 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.68 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.07 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.05 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.94 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.85 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.63 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.86 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.8 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.6e-23 Score=195.29 Aligned_cols=373 Identities=14% Similarity=0.051 Sum_probs=301.1
Q ss_pred HHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 042265 82 IIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHR 161 (490)
Q Consensus 82 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 161 (490)
+...+.+.|++++|++.|+++.+.. +-+...+..+..++.+.|++++|...++..++.. |.+..++..+..++.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 3456778899999999999988753 2345678888888889999999999999998876 6677888899999999999
Q ss_pred hHHHHHHHHhcccC---CchhHHHHHHHHHhcCCHHHHHHHHhhC---CCCCeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 042265 162 LRDAQELFDEILYR---DVVSCNTLIDGYVKAGDLAHARQLFDRM---PFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMM 235 (490)
Q Consensus 162 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 235 (490)
+++|...+...... +...+..........+....+....... ..................+....+...+....
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence 99999999888543 3333444444444445544444444332 23345566666777778888888888888877
Q ss_pred hCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehH
Q 042265 236 DLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTW 312 (490)
Q Consensus 236 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~ 312 (490)
... +-+...+..+...+...|+.++|...++...+.. +.+...+..+...+...|++++|...+++... .+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH
Confidence 653 3356677888888999999999999999988875 56677888899999999999999999987653 456678
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh
Q 042265 313 NAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR 392 (490)
Q Consensus 313 ~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 392 (490)
..+...+...|++++|+..|++..+... -+..++..+...+...|++++|.+.++.... ..+.+...+..+...+..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHH
Confidence 8888999999999999999999988632 2567888889999999999999999999987 566777888999999999
Q ss_pred cCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 393 AGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 393 ~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
.|++++|++.+++.. ..| ++.++..++..+...|++++|+..++++++++|+++.++..++.+|.+.|+
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999854 455 788899999999999999999999999999999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.1e-21 Score=182.64 Aligned_cols=353 Identities=16% Similarity=0.065 Sum_probs=296.2
Q ss_pred HHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc--C-CchhHHHHHHHHHhcCCH
Q 042265 117 LLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY--R-DVVSCNTLIDGYVKAGDL 193 (490)
Q Consensus 117 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~ 193 (490)
+...+.+.|++++|.+.++++.+.. |-+...+..+..++.+.|++++|...++++++ | +..+|..+...+.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 3455678899999999999999875 66788999999999999999999999999854 3 556889999999999999
Q ss_pred HHHHHHHhhCCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 042265 194 AHARQLFDRMPF---RDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIE 270 (490)
Q Consensus 194 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 270 (490)
++|.+.+..... .+...+..........+....+........... .................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 999999988653 244555566666667777777777776665544 3344455566666778888888888888877
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 042265 271 LNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTI 347 (490)
Q Consensus 271 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 347 (490)
... +.+...+..+...+...|++++|...+++..+ .+...|..+...+...|++++|+..+++..... ..+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 765 56677888899999999999999999987653 356688889999999999999999999988864 3456778
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CC-CCHHHHHHHHHHHHhc
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MG-GDVFVWSGLLGGCRIH 425 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~ 425 (490)
..+...+.+.|++++|...|+++.+ ..+.+...+..+...+...|++++|.+.++... .. .+...+..+...+...
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 8888999999999999999999987 455677889999999999999999999998754 22 3888899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 426 GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.|++..+.
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=7.6e-15 Score=132.53 Aligned_cols=252 Identities=14% Similarity=0.006 Sum_probs=165.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG 292 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 292 (490)
.....+.+.|++++|+..|+++++.. +-+...|..+..++...|++++|...+.++.+.. |.+...+..++.+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 34445556666666666666665543 2234455555566666666666666666655554 344555555566666666
Q ss_pred CHHHHHHHHhccCCC------------------CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHH
Q 042265 293 YINTAIEIFESSQEK------------------NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARI-KPDGVTILGALVG 353 (490)
Q Consensus 293 ~~~~A~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~ 353 (490)
++++|.+.+++.... +.......+..+...+...+|...+.+...... .++...+..+...
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 666666655543211 001111122234455667788888887776432 3356677778888
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIA 431 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 431 (490)
+...|++++|...+++.... .+.+...+..+...|...|++++|.+.+++.. ..| +..++..++.+|.+.|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 259 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 259 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998873 44567788889999999999999999998754 234 788899999999999999999
Q ss_pred HHHHHHHHhhCCCCCc-----------hHHHHHHHHHhcCChHHHHHH
Q 042265 432 EAAAEHVMKLKPEDGG-----------VYKVLADVYANADRWEDVVKI 468 (490)
Q Consensus 432 ~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~~ 468 (490)
+..|++++++.|++.. .+..+..++...|+.+.+...
T Consensus 260 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 260 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998887654 345566677777776655433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.5e-15 Score=134.80 Aligned_cols=224 Identities=15% Similarity=0.030 Sum_probs=187.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCC
Q 042265 248 SALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGL 324 (490)
Q Consensus 248 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 324 (490)
.....+.+.|++++|...|+++.+.. |.+...+..+..+|...|++++|...|++..+ .+...|..+...|...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccc
Confidence 45667889999999999999999886 66788999999999999999999999988663 356788889999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 325 GRLSLVYFSRMIEARIKPDGVT----------------ILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 325 ~~~A~~~~~~m~~~~~~p~~~~----------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
+++|.+.+++..... |+... ....+..+...+...+|...+.++.+......+...+..+..
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~ 180 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 180 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 999999999988742 22110 111122334456788899999888775334456677888999
Q ss_pred hhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHH
Q 042265 389 LLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVV 466 (490)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 466 (490)
.+...|++++|...+++.. ..| +...|..++..+...|++++|++.++++++.+|+++.++..++.+|.+.|++++|+
T Consensus 181 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 181 LFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999854 334 78899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 042265 467 KIRRSLDA 474 (490)
Q Consensus 467 ~~~~~m~~ 474 (490)
+.|++..+
T Consensus 261 ~~~~~al~ 268 (323)
T d1fcha_ 261 EHFLEALN 268 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=3.1e-10 Score=102.88 Aligned_cols=159 Identities=15% Similarity=0.039 Sum_probs=73.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC-----chHHH
Q 042265 314 AMLVGLAMHGLGRLSLVYFSRMIEAR----IKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE-----LKHYG 384 (490)
Q Consensus 314 ~l~~~~~~~~~~~~A~~~~~~m~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~ 384 (490)
.+...+...|+++.+...+....... .......+......+...++...+...+.+.......... ...+.
T Consensus 138 ~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (366)
T d1hz4a_ 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 217 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHH
Confidence 34444555555555555555544321 1111223333334444555555555555444332111111 11233
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCCCC-C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------hCCCCCchHHHH
Q 042265 385 CMADLLGRAGLIEEALEMIKKMPMG-G-----DVFVWSGLLGGCRIHGNVEIAEAAAEHVMK------LKPEDGGVYKVL 452 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~l 452 (490)
.+...+...|++++|...+++.... + ....+..+...+...|++++|...+++++. ..|....++..+
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 297 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHH
Confidence 3444455555666665555543311 1 233444455555556666666666655543 122233345555
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 042265 453 ADVYANADRWEDVVKIRRSL 472 (490)
Q Consensus 453 ~~~~~~~g~~~~A~~~~~~m 472 (490)
+.+|.+.|++++|.+.+++.
T Consensus 298 a~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55666666666666655554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=1.7e-10 Score=99.71 Aligned_cols=220 Identities=12% Similarity=-0.040 Sum_probs=137.6
Q ss_pred hhHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042265 224 CEEAIQLFCNMMDLDI-KP--DNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEI 300 (490)
Q Consensus 224 ~~~A~~~~~~m~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 300 (490)
.+.++.-+++...... .+ ...++..+..++.+.|++++|...|++..+.. |.++.++..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 4455555666554321 11 12356666777788888888888888887775 56677788888888888888888888
Q ss_pred HhccCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCC
Q 042265 301 FESSQE--K-NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVS 377 (490)
Q Consensus 301 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 377 (490)
|+++.+ | +..++..+..++...|++++|...|++..+... .+......+..++.+.+..+.+..+....... .
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---D 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---C
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---c
Confidence 877663 2 455777788888888999999999888877532 23444333444445555555555555554442 2
Q ss_pred CCchHHHHHHhhhhhcCC----HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 042265 378 KELKHYGCMADLLGRAGL----IEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVY 449 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 449 (490)
+....++ ++..+..... .+.+...+.... ..| ...++..+...+...|++++|+..|++++..+|++...|
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 2222222 2222222222 222222221111 011 345677788899999999999999999999999876444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=7e-11 Score=106.50 Aligned_cols=232 Identities=6% Similarity=-0.099 Sum_probs=168.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCChhhH-HHHHHHHHhcCCH
Q 042265 218 YAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLG--ELEQGKNIHRYIELNQIRVDSFLS-TGLVDFYAKCGYI 294 (490)
Q Consensus 218 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~ 294 (490)
+...|++++|+.+++...+.. +-+...+..+..++...+ +++++...+..+.+.. +.+...+ ......+...+.+
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhcccc
Confidence 344566778888888887753 335556666666666554 4788888888888875 4445544 4455677788999
Q ss_pred HHHHHHHhccCCC---CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhH
Q 042265 295 NTAIEIFESSQEK---NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEME 371 (490)
Q Consensus 295 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (490)
++|+..++.+.+. +...|+.+...+...|++++|...++..... .|+. ......+...+..+++...+....
T Consensus 161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHH
Confidence 9999999888764 4567788888888888888776655544332 1211 122233445566677788888777
Q ss_pred HhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchH
Q 042265 372 SVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMG-G-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVY 449 (490)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 449 (490)
. ..+++...+..++..+...|+.++|...+.+.... | +..++..++..+...|++++|++.++++++++|.+...|
T Consensus 236 ~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 236 L--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp H--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred H--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 6 45566666777788888899999999999876543 4 677888899999999999999999999999999988888
Q ss_pred HHHHHHHHh
Q 042265 450 KVLADVYAN 458 (490)
Q Consensus 450 ~~l~~~~~~ 458 (490)
..|...+.-
T Consensus 314 ~~L~~~~~~ 322 (334)
T d1dcea1 314 DDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhH
Confidence 888776653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.7e-09 Score=94.65 Aligned_cols=241 Identities=11% Similarity=0.092 Sum_probs=156.6
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLG-ELEQGKNIHRYIELNQIRVDSFLSTGLVDF 287 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 287 (490)
.+|+.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|...++.+.+.. +-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 356677777888888888988888888853 234556677777777765 4788888888888776 6677888888888
Q ss_pred HHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc------C
Q 042265 288 YAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHA------G 358 (490)
Q Consensus 288 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------g 358 (490)
+.+.|++++|+..++++.+ .+...|..+...+...|++++|++.++++++..+. +...|+.+...+.+. +
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 8888888888888887764 35677888888888888888888888888876422 455565554443333 3
Q ss_pred cHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhC---C-CCCCHHHHHHHHHHHHhc--CC-----
Q 042265 359 LVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKM---P-MGGDVFVWSGLLGGCRIH--GN----- 427 (490)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~-~~~~~~~~~~l~~~~~~~--~~----- 427 (490)
.+++|.+.+.++.+ ..+.+...|..+...+...| .+++.+.++.. . ...+...+..++..|... ++
T Consensus 201 ~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~ 277 (315)
T d2h6fa1 201 VLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277 (315)
T ss_dssp HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred hhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 46778888887776 34456666666665554433 34444444332 2 222556666666655432 22
Q ss_pred --HHHHHHHHHHHHh-hCCCCCchHHHHHHH
Q 042265 428 --VEIAEAAAEHVMK-LKPEDGGVYKVLADV 455 (490)
Q Consensus 428 --~~~a~~~~~~~~~-~~p~~~~~~~~l~~~ 455 (490)
+++|..+++...+ .+|-....|..++..
T Consensus 278 ~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~ 308 (315)
T d2h6fa1 278 DILNKALELCEILAKEKDTIRKEYWRYIGRS 308 (315)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444444332 455444344444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=2.2e-09 Score=97.05 Aligned_cols=257 Identities=10% Similarity=-0.038 Sum_probs=149.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCCC---h
Q 042265 211 WGTLVAGYAQSDQCEEAIQLFCNMMDLD----IKP-DNIALVSALSACARLGELEQGKNIHRYIELN----QIRVD---S 278 (490)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~ 278 (490)
+..+..++...|++++|...|++..+.. ..+ ....+..+...+...|++..+...+...... ..+.. .
T Consensus 54 ~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~ 133 (366)
T d1hz4a_ 54 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 133 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHH
Confidence 4445555555566666666555544311 001 1123344445555666666666655554432 11111 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHhccCC----C----CeehHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC----H
Q 042265 279 FLSTGLVDFYAKCGYINTAIEIFESSQE----K----NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEA--RIKPD----G 344 (490)
Q Consensus 279 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--~~~p~----~ 344 (490)
..+..+...+...|+++.+...+..... . ....+......+...++...+...+.+.... ..... .
T Consensus 134 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~ 213 (366)
T d1hz4a_ 134 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 213 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH
Confidence 2344455566666777666666654331 0 1223444555566777777777776665431 11111 1
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCC---chHHHHHHhhhhhcCCHHHHHHHHhhCC-------CCC-CHH
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKE---LKHYGCMADLLGRAGLIEEALEMIKKMP-------MGG-DVF 413 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~ 413 (490)
..+..+...+...|++++|...++..... ....+ ...+..+...+...|++++|...+++.. ..| ...
T Consensus 214 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 214 NANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 23445556677888999999988887653 21111 2344557788888999999988887653 122 455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---------CchHHHHHHHHHhcCChHHHHHH
Q 042265 414 VWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED---------GGVYKVLADVYANADRWEDVVKI 468 (490)
Q Consensus 414 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~ 468 (490)
.+..+...+...|++++|.+.+++++++.+.. ...+..++..+...++.+++..-
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 77788888999999999999999998843321 12344555666677777776543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=1.2e-09 Score=96.87 Aligned_cols=225 Identities=10% Similarity=0.058 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHhccCC---CCeehHHHHHHHH
Q 042265 244 IALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCG-YINTAIEIFESSQE---KNLFTWNAMLVGL 319 (490)
Q Consensus 244 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 319 (490)
..++.+...+.+.+..++|+..++++++.. |-+...|+....++...| ++++|+..++++.+ .+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 356667777888899999999999999987 778888999999988876 59999999998763 4677899999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC----
Q 042265 320 AMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL---- 395 (490)
Q Consensus 320 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 395 (490)
...|++++|+..++++.+... -+...|..+...+...|++++|.+.++++.+ -.+.+...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccchh
Confidence 999999999999999998642 3678899999999999999999999999998 345566777777766665554
Q ss_pred --HHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc--hHHHHHHHHHhc--CC------
Q 042265 396 --IEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG--VYKVLADVYANA--DR------ 461 (490)
Q Consensus 396 --~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~--g~------ 461 (490)
+++|++.+.+.. ..| +...|..+...+... ..+++.+.++.+.++.|+... .+..++..|... +.
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 678888887643 445 788888777765544 468889999999998887544 445666666543 33
Q ss_pred -hHHHHHHHHHHh
Q 042265 462 -WEDVVKIRRSLD 473 (490)
Q Consensus 462 -~~~A~~~~~~m~ 473 (490)
+++|.++++.+.
T Consensus 279 ~~~ka~~l~~~l~ 291 (315)
T d2h6fa1 279 ILNKALELCEILA 291 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 455555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=3.2e-09 Score=94.05 Aligned_cols=186 Identities=9% Similarity=-0.023 Sum_probs=135.5
Q ss_pred ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCC---C-eehHHHHHHHHHHcCChHHHHHHHH
Q 042265 258 ELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEK---N-LFTWNAMLVGLAMHGLGRLSLVYFS 333 (490)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~A~~~~~ 333 (490)
..+++..++++..+...+.+...+..++..+.+.|+++.|..+|+++.+. + ...|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34677788888877655566667777888888888888888888876542 2 2357777888888888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHH-hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCC----
Q 042265 334 RMIEARIKPDGVTILGALVG-CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPM---- 408 (490)
Q Consensus 334 ~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 408 (490)
++.+.+.. +...|...... +...|+.+.|..+|+.+.+ ..+.+...+...++.+.+.|+++.|..+|++...
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~--~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 88776433 33333333322 3345788888888888887 3455677788888888888888888888887431
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 409 GG--DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 409 ~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
.| ....|...+..-...|+.+.+..+++++.+..|...
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 21 456788888877888899888888888888777664
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=3.4e-09 Score=93.83 Aligned_cols=182 Identities=10% Similarity=0.008 Sum_probs=145.2
Q ss_pred CCHHHHHHHHhccCC----CCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 292 GYINTAIEIFESSQE----KNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 292 ~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
+..++|..+|++..+ .+...|...+..+...|+.+.|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 345778888887543 3556788888889999999999999999987644434557888899999999999999999
Q ss_pred HHhHHhhCCCCCchHHHHHHhh-hhhcCCHHHHHHHHhhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 042265 368 DEMESVYGVSKELKHYGCMADL-LGRAGLIEEALEMIKKMPM-GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPE 444 (490)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 444 (490)
+++.+ ..+.+...|...+.. +...|+.+.|..+|+.+.. .| +...|..++..+...|+.+.|..+|+++++..|.
T Consensus 158 ~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99987 444455555555443 3446899999999998653 23 7889999999999999999999999999997665
Q ss_pred CC----chHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 445 DG----GVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 445 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
++ ..|...+..-...|+.+.+.++++++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44 36788888888899999999999988653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=3.2e-09 Score=91.44 Aligned_cols=212 Identities=11% Similarity=-0.061 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHhccCC---CCeehHHHHHHHHHHcCChHHHHHHH
Q 042265 259 LEQGKNIHRYIELNQIRV---DSFLSTGLVDFYAKCGYINTAIEIFESSQE---KNLFTWNAMLVGLAMHGLGRLSLVYF 332 (490)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 332 (490)
.+.+..-+++........ ...++..+..+|.+.|++++|+..|++..+ .++.+|+.+..++...|++++|+..|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 345555556665542111 234677788999999999999999998763 46788999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhh---CCCC
Q 042265 333 SRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKK---MPMG 409 (490)
Q Consensus 333 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~ 409 (490)
+++.+.... +..++..+..++...|++++|...|+...+. .+.+......+...+.+.+..+.+..+... ....
T Consensus 95 ~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 95 DSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred hHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 999986432 4567888888999999999999999999884 344454444455555566655554444333 2222
Q ss_pred CCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 410 GDVFVWSGLLGGCR----IHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 410 ~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+. .+. ++..+. ..+..+.+...+.......|....++..++..|...|++++|.+.|++..+..
T Consensus 172 ~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 172 QW--GWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp ST--HHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hh--hhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 21 111 222222 22334445555555555667666788999999999999999999999987654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=1.6e-08 Score=90.62 Aligned_cols=251 Identities=12% Similarity=-0.002 Sum_probs=168.4
Q ss_pred HHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCccc-HHHH---HHHHh-------ccCCcHHHHHHHHHHHHhCCCCchh
Q 042265 79 YNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYS-FPFL---LRACS-------QLCSHSLAQTIHSQVLKLGFICDVF 147 (490)
Q Consensus 79 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l---l~~~~-------~~~~~~~a~~~~~~~~~~g~~~~~~ 147 (490)
+..++....+.+..++|++++++..+. .|+..+ |+.. +.... ..|++++|...++...+.. |.+..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~ 108 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG 108 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence 344444444445568999999999875 466553 3322 22222 2345788999999998876 67788
Q ss_pred HHHHHHHHHHhcCC--hHHHHHHHHhcccC---CchhHH-HHHHHHHhcCCHHHHHHHHhhCCCC---CeehHHHHHHHH
Q 042265 148 VLNSLMHVYCVFHR--LRDAQELFDEILYR---DVVSCN-TLIDGYVKAGDLAHARQLFDRMPFR---DAVSWGTLVAGY 218 (490)
Q Consensus 148 ~~~~li~~~~~~g~--~~~A~~~~~~~~~~---~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~ 218 (490)
.|..+..++...++ .++|...++++... +...+. .....+...+.+++|+..++.+... +..+|+.+..++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~ 188 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL 188 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 88888888777664 78999999988543 344444 3446677789999999999887754 566788888999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 042265 219 AQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAI 298 (490)
Q Consensus 219 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 298 (490)
.+.|++++|...+....+. .|+. ......+...+..+++...+....... +++...+..++..+...++.++|.
T Consensus 189 ~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 262 (334)
T d1dcea1 189 PQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESC 262 (334)
T ss_dssp HHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHH
Confidence 9999988876665544432 1211 122333445566667777777766654 455555666666677777777777
Q ss_pred HHHhccCCCCe---ehHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 042265 299 EIFESSQEKNL---FTWNAMLVGLAMHGLGRLSLVYFSRMIEA 338 (490)
Q Consensus 299 ~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 338 (490)
..+.+..+.++ .++..+...+...|+.++|.+.+++..+.
T Consensus 263 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 263 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777766544 45555666677777777777777777664
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.78 E-value=1.5e-08 Score=83.41 Aligned_cols=120 Identities=13% Similarity=-0.085 Sum_probs=88.2
Q ss_pred CCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHH
Q 042265 342 PDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLL 419 (490)
Q Consensus 342 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~ 419 (490)
|+...+......+.+.|++++|+..|+++.+ -.|.++..|..+..+|.+.|++++|+..|++.. ..| +..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 6666777777788888888888888888877 345667778888888888888888888887754 334 677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChH
Q 042265 420 GGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWE 463 (490)
Q Consensus 420 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (490)
.+|...|++++|+..|++++++.|++...+...+..+...+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~ 123 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888877765555554454444444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=5.7e-08 Score=71.73 Aligned_cols=100 Identities=15% Similarity=0.050 Sum_probs=52.3
Q ss_pred HhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 042265 353 GCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 430 (490)
.+...|++++|...|+++.+ -.+.+...|..+..+|...|++++|+..+++.. ..| ++..|..++.++...|++++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 34455555555555555554 233444455555555555555555555555432 122 55555555555555555555
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHH
Q 042265 431 AEAAAEHVMKLKPEDGGVYKVLAD 454 (490)
Q Consensus 431 a~~~~~~~~~~~p~~~~~~~~l~~ 454 (490)
|+..++++++.+|+++.++..+..
T Consensus 90 A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 90 AKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHH
Confidence 555555555555555544444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=4.1e-08 Score=72.50 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=83.8
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 042265 385 CMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRW 462 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (490)
.-...+.+.|++++|+..|++.. ..| ++..|..+..++...|++++|+..++++++++|+++..|..++.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 34667889999999999999864 344 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 042265 463 EDVVKIRRSLDAGK 476 (490)
Q Consensus 463 ~~A~~~~~~m~~~~ 476 (490)
++|...+++..+..
T Consensus 88 ~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.69 E-value=2e-08 Score=73.63 Aligned_cols=89 Identities=17% Similarity=0.021 Sum_probs=80.8
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR 461 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 461 (490)
-.+...+.+.|++++|...|++.. ..| ++..|..++.++.+.|++++|+..++++++++|+++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 346677888999999999998854 344 899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH
Q 042265 462 WEDVVKIRRSL 472 (490)
Q Consensus 462 ~~~A~~~~~~m 472 (490)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=4.8e-08 Score=80.21 Aligned_cols=94 Identities=9% Similarity=-0.091 Sum_probs=59.1
Q ss_pred ehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhh
Q 042265 310 FTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADL 389 (490)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 389 (490)
..+......+.+.|++++|+..|++.+... +.+...|..+..+|.+.|++++|...|+++.+ -.+-+...|..+..+
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQC 81 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 344455566667777777777776666643 22455666666666777777777777776664 233345566666777
Q ss_pred hhhcCCHHHHHHHHhhC
Q 042265 390 LGRAGLIEEALEMIKKM 406 (490)
Q Consensus 390 ~~~~g~~~~A~~~~~~~ 406 (490)
|...|++++|+..|++.
T Consensus 82 ~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 82 QLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 77777777777666653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.9e-07 Score=73.19 Aligned_cols=117 Identities=15% Similarity=0.065 Sum_probs=95.9
Q ss_pred HHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCC
Q 042265 350 ALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGN 427 (490)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 427 (490)
....+.+.|++++|...|+++.+. .+.+...|..+..+|...|++++|...|++.. ..| +...|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345577899999999999999883 46677888889999999999999999998864 234 88899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHH--hcCChHHHHHH
Q 042265 428 VEIAEAAAEHVMKLKPEDGGVYKVLADVYA--NADRWEDVVKI 468 (490)
Q Consensus 428 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~ 468 (490)
+++|+..+++++++.|+++.++..+..+.. ..+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999988877766543 34456666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=2.6e-07 Score=74.83 Aligned_cols=124 Identities=15% Similarity=-0.048 Sum_probs=101.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC
Q 042265 316 LVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL 395 (490)
Q Consensus 316 ~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 395 (490)
...+...|+++.|++.|+++ .+|+..++..+..++...|++++|.+.|++..+ -.+.+...|..+..++.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhcc
Confidence 45567889999999988764 356778888899999999999999999999988 456677888889999999999
Q ss_pred HHHHHHHHhhCC----CCC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 042265 396 IEEALEMIKKMP----MGG--------------DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED 445 (490)
Q Consensus 396 ~~~A~~~~~~~~----~~~--------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 445 (490)
+++|.+.|++.. ..+ ...++..+..++.+.|++++|.+.++++++..|..
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999998887742 111 24567778888899999999999999999988864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.5e-06 Score=70.29 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=42.0
Q ss_pred HHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeehHHHHHHHHHhcCChhHHHHHHH
Q 042265 156 YCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMP---FRDAVSWGTLVAGYAQSDQCEEAIQLFC 232 (490)
Q Consensus 156 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 232 (490)
+...|+++.|++.|+++.+++..+|..+..++...|++++|++.|++.. +.+...|..+..++.+.|++++|++.|+
T Consensus 15 ~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~ 94 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 94 (192)
T ss_dssp HHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 4445555555555555554555555555555555555555555555433 2234455555555555555555555555
Q ss_pred HHH
Q 042265 233 NMM 235 (490)
Q Consensus 233 ~m~ 235 (490)
+.+
T Consensus 95 kAl 97 (192)
T d1hh8a_ 95 EAL 97 (192)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=1.3e-06 Score=75.96 Aligned_cols=59 Identities=12% Similarity=0.005 Sum_probs=36.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 042265 213 TLVAGYAQSDQCEEAIQLFCNMMDL----DIKPD-NIALVSALSACARLGELEQGKNIHRYIEL 271 (490)
Q Consensus 213 ~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 271 (490)
.....|...|++++|.+.|.++.+. +-+++ ..+|..+..+|.+.|++++|...++...+
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~ 105 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ 105 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence 3456667777777777777666542 11111 23566667777777777777777666544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.5e-07 Score=69.57 Aligned_cols=106 Identities=12% Similarity=-0.034 Sum_probs=84.7
Q ss_pred HHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCC---HHHHHHHHhhCCCC-CC---HHHHHHHHH
Q 042265 348 LGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGL---IEEALEMIKKMPMG-GD---VFVWSGLLG 420 (490)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~-~~---~~~~~~l~~ 420 (490)
..++..+...+++++|++.|++... ..+.++.++..+..++.+.++ +++|+++++++... |+ ..++..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 4567777888999999999999998 456677888888888877554 45699999986543 32 347888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 421 GCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 421 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
+|.+.|++++|++.|+++++++|++..+.......
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999998666555433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=8.1e-07 Score=77.35 Aligned_cols=53 Identities=8% Similarity=-0.116 Sum_probs=25.3
Q ss_pred HHhccCCcHHHHHHHHHHHHh----CCC-CchhHHHHHHHHHHhcCChHHHHHHHHhc
Q 042265 120 ACSQLCSHSLAQTIHSQVLKL----GFI-CDVFVLNSLMHVYCVFHRLRDAQELFDEI 172 (490)
Q Consensus 120 ~~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 172 (490)
.|...|++++|.+.|.+..+. +-+ .-..+|..+..+|.+.|++++|.+.+++.
T Consensus 46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a 103 (290)
T d1qqea_ 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103 (290)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence 344455555555555554432 101 11234555555555566666655555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.57 E-value=7.2e-06 Score=70.05 Aligned_cols=230 Identities=13% Similarity=-0.012 Sum_probs=132.8
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCChhhHH
Q 042265 207 DAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACAR----LGELEQGKNIHRYIELNQIRVDSFLST 282 (490)
Q Consensus 207 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 282 (490)
|+..+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...+..++....+.+. +....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhh
Confidence 34455666666777777777777777776655 33444444444443 3455556555555554431 11122
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh----hccC
Q 042265 283 GLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGC----SHAG 358 (490)
Q Consensus 283 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~----~~~g 358 (490)
.+...+... ....++.+.|...++.....|.... ...+...+ ....
T Consensus 75 ~l~~~~~~~---------------------------~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~ 124 (265)
T d1ouva_ 75 LLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTR 124 (265)
T ss_dssp HHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCC
T ss_pred ccccccccc---------------------------cccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccc
Confidence 222221110 0113455666666666665543211 11111111 2234
Q ss_pred cHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh----cCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 042265 359 LVDEARKLFDEMESVYGVSKELKHYGCMADLLGR----AGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEI 430 (490)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 430 (490)
....+...+...... .+...+..+...|.. ..+...+..+++.....+++.....+...+.. ..+++.
T Consensus 125 ~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp CHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred hhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhh
Confidence 555666666655542 344455556555553 45666777777776666677777777777665 568889
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHhcCCCC
Q 042265 431 AEAAAEHVMKLKPEDGGVYKVLADVYAN----ADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 431 a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 478 (490)
|+.+|+++.+.. ++.++..|+..|.+ ..+.++|.++|++..+.|..
T Consensus 201 A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 201 ALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 999999888864 34578888888875 33788899998888776643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.4e-07 Score=73.95 Aligned_cols=92 Identities=11% Similarity=-0.005 Sum_probs=83.3
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCCh
Q 042265 385 CMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRW 462 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 462 (490)
.....|.+.|++++|+..|++.. ..| +...|..+..++...|++++|++.|+++++++|.+..+|..++.++...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 34567889999999999999864 334 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 042265 463 EDVVKIRRSLDAGK 476 (490)
Q Consensus 463 ~~A~~~~~~m~~~~ 476 (490)
++|...+++.....
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999987653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=9.4e-07 Score=69.89 Aligned_cols=84 Identities=17% Similarity=0.026 Sum_probs=71.1
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA 459 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (490)
+|+.+..+|.+.|++++|+..+++.. ..| ++..+..++.++...|++++|+..|+++++++|+++.+...+..+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 46678888999999999999998754 345 8899999999999999999999999999999999998888888887666
Q ss_pred CChHHH
Q 042265 460 DRWEDV 465 (490)
Q Consensus 460 g~~~~A 465 (490)
+...+.
T Consensus 144 ~~~~~~ 149 (170)
T d1p5qa1 144 RRQLAR 149 (170)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=5.2e-08 Score=92.06 Aligned_cols=96 Identities=13% Similarity=-0.033 Sum_probs=41.7
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHh
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYAN 458 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 458 (490)
+...+..+...+.+.|+.++|...+++.........+..++..+...|++++|+..|++++++.|++..+|+.|+.++..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34444555555556666666555444322111223455555566666666666666666666666666666666666666
Q ss_pred cCChHHHHHHHHHHhc
Q 042265 459 ADRWEDVVKIRRSLDA 474 (490)
Q Consensus 459 ~g~~~~A~~~~~~m~~ 474 (490)
.|+..+|...|.+...
T Consensus 199 ~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIA 214 (497)
T ss_dssp TTCHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHh
Confidence 6666666666665544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.35 E-value=0.00015 Score=61.52 Aligned_cols=228 Identities=13% Similarity=-0.036 Sum_probs=136.9
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-CeehHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042265 176 DVVSCNTLIDGYVKAGDLAHARQLFDRMPFR-DAVSWGTLVAGYAQ----SDQCEEAIQLFCNMMDLDIKPDNIALVSAL 250 (490)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 250 (490)
|+..+..+...+.+.+|+++|.+.|++..+. +..++..|...|.. ..+...|...+....+.+ +......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 4567778888888999999999999987544 67777788888876 668899999999988766 223333343
Q ss_pred HHHH----ccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChH
Q 042265 251 SACA----RLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGR 326 (490)
Q Consensus 251 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 326 (490)
..+. ..++.+.|...++...+.|.. .....+...+.... .......
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~---------------------------~~~~~~~ 127 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGK---------------------------VVTRDFK 127 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCS---------------------------SSCCCHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCC---------------------------cccchhH
Confidence 3332 246778888888888776621 11222222222100 0112233
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh----cCCHHH
Q 042265 327 LSLVYFSRMIEARIKPDGVTILGALVGCSH----AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR----AGLIEE 398 (490)
Q Consensus 327 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 398 (490)
.+...+...... .+...+..+...+.. ..+...+...++...+. .+......+...|.. ..++++
T Consensus 128 ~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 128 KAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp HHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhh
Confidence 344444443332 133333334443332 34455555555555542 233334444444443 457778
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 042265 399 ALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 443 (490)
|..+|++....+++..+..|...|.. .++.++|.++|+++.+..+
T Consensus 201 A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 201 ALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 88888776666677777777777664 3477788888888777554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.32 E-value=0.00068 Score=58.80 Aligned_cols=143 Identities=14% Similarity=0.083 Sum_probs=82.9
Q ss_pred CchhHHHHHHHhhccCCcCCCCCCCCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcc
Q 042265 33 PCHILTTILYAITTFKPISSASSPTTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFY 112 (490)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 112 (490)
|+..--..+...|- +.|.++.|..++..+. -|..++..+.+.++++.|.+++.+. -+..
T Consensus 12 ~n~~d~~~i~~~c~----------~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~ 70 (336)
T d1b89a_ 12 PNNAHIQQVGDRCY----------DEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTR 70 (336)
T ss_dssp C--------------------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHH
T ss_pred CCcCCHHHHHHHHH----------HCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHH
Confidence 55555566677777 7888888888887654 5667777788888888887776644 2455
Q ss_pred cHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhccc---CCchhHHHHHHHHHh
Q 042265 113 SFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILY---RDVVSCNTLIDGYVK 189 (490)
Q Consensus 113 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 189 (490)
+|..+...|.+......+ .+...+...++.....++..|-..|.+++...+++.... .+...++.++..|++
T Consensus 71 ~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 71 TWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence 777777777766555443 222333345556666778888888888888888886533 355567777777776
Q ss_pred cCCHHHHHHHHhh
Q 042265 190 AGDLAHARQLFDR 202 (490)
Q Consensus 190 ~~~~~~a~~~~~~ 202 (490)
.+ .++..+.+..
T Consensus 146 ~~-~~kl~e~l~~ 157 (336)
T d1b89a_ 146 FK-PQKMREHLEL 157 (336)
T ss_dssp TC-HHHHHHHHHH
T ss_pred hC-hHHHHHHHHh
Confidence 54 3444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.30 E-value=1.2e-05 Score=63.24 Aligned_cols=92 Identities=11% Similarity=0.003 Sum_probs=73.8
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhc
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANA 459 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 459 (490)
+|..+..+|.+.|++++|+..+++.. ..| +...|..++.++...|++++|+..|+++++++|+++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 45667888899999999999998754 234 8889999999999999999999999999999999998888888877666
Q ss_pred CChH-HHHHHHHHHh
Q 042265 460 DRWE-DVVKIRRSLD 473 (490)
Q Consensus 460 g~~~-~A~~~~~~m~ 473 (490)
+... ...+++.+|-
T Consensus 146 ~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 146 KEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHH
Confidence 6543 3445555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.29 E-value=3e-06 Score=66.88 Aligned_cols=87 Identities=13% Similarity=0.024 Sum_probs=67.5
Q ss_pred CchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHH
Q 042265 379 ELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVY 456 (490)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 456 (490)
....+..+..++.+.|++++|+..+++.. ..| ++..|..++.++...|++++|+..|+++++++|++..+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34456677888888899999998888754 334 8888888889999999999999999999999998888887777776
Q ss_pred HhcCChHHH
Q 042265 457 ANADRWEDV 465 (490)
Q Consensus 457 ~~~g~~~~A 465 (490)
.+.....++
T Consensus 156 ~~l~~~~~~ 164 (169)
T d1ihga1 156 QKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=4e-06 Score=66.14 Aligned_cols=112 Identities=6% Similarity=-0.070 Sum_probs=80.9
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIH 425 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (490)
.+......+.+.|++++|...|.+........+.... ........+ ...+|..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~------------~~~~~~~~~-------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN------------EEAQKAQAL-------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS------------HHHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch------------HHHhhhchh-------HHHHHHHHHHHHHhh
Confidence 3444455667778888888888777763221111100 000000000 134677788899999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 426 GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
|++++|+..++++++++|+++.++..++.+|...|++++|...|++..+..
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999987653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=2.2e-06 Score=64.03 Aligned_cols=92 Identities=11% Similarity=0.142 Sum_probs=73.5
Q ss_pred HHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCc-------hHHHHH
Q 042265 383 YGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGG-------VYKVLA 453 (490)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 453 (490)
+..+...+.+.|++++|+..|++.. ..| +...+..+..+|.+.|++++|++.++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 4456777888888888888887754 333 7888999999999999999999999999998887765 445566
Q ss_pred HHHHhcCChHHHHHHHHHHhc
Q 042265 454 DVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 454 ~~~~~~g~~~~A~~~~~~m~~ 474 (490)
..+...+++++|.+.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677778899999999987654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.25 E-value=4.5e-06 Score=64.50 Aligned_cols=74 Identities=14% Similarity=0.037 Sum_probs=46.1
Q ss_pred HHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 382 HYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
+|..+..+|.+.|++++|++.+++.. ..| +..+|..++.++...|++++|+..|+++++++|++..+...+..+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44556666666666666666666533 233 666666666666667777777777777776666666555554444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.25 E-value=0.0011 Score=57.41 Aligned_cols=137 Identities=11% Similarity=0.048 Sum_probs=84.8
Q ss_pred CCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHH
Q 042265 108 PPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGY 187 (490)
Q Consensus 108 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 187 (490)
.||..--..+...|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. .+..+|..+...+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l 79 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFAC 79 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHH
Confidence 3666666677788888899999988887542 2556778888889999888887755 3566888888888
Q ss_pred HhcCCHHHHHHHHhhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 042265 188 VKAGDLAHARQLFDRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLG 257 (490)
Q Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 257 (490)
.+......+.-+ ......++.....++..|-..|.+++...+++..... -.++...++.++..|++.+
T Consensus 80 ~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 80 VDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 877766554322 2222224455567888888888888888888876643 2456667778888777754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.19 E-value=6.1e-06 Score=59.81 Aligned_cols=92 Identities=11% Similarity=-0.113 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 042265 210 SWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYA 289 (490)
Q Consensus 210 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 289 (490)
.+-.+...+.+.|++++|+..|++.++.. +-+...|..+..++.+.|++++|...++++.+.. |.+..++..+..+|.
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~ 95 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 95 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHH
Confidence 34456677788888888888888887754 2356677888888888888888888888888776 666777788888888
Q ss_pred hcCCHHHHHHHHhc
Q 042265 290 KCGYINTAIEIFES 303 (490)
Q Consensus 290 ~~~~~~~A~~~~~~ 303 (490)
..|++++|.+.+++
T Consensus 96 ~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 96 NEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHH
Confidence 88888888877765
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.15 E-value=4.7e-06 Score=64.38 Aligned_cols=113 Identities=12% Similarity=-0.025 Sum_probs=80.4
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 042265 346 TILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIH 425 (490)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (490)
.+..-...+.+.|++.+|...|.++.......+... .......... ....++..+..+|.+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--------------DQILLDKKKN----IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--------------CHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh--------------hHHHHHhhhh----HHHHHHhhHHHHHHHh
Confidence 344445556677778888777777765311111100 0000000000 0234677899999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 426 GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
|++++|++.++++++++|.+..+|..++.++...|++++|...|++..+..
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999987653
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.15 E-value=4.6e-06 Score=66.12 Aligned_cols=119 Identities=15% Similarity=0.105 Sum_probs=84.5
Q ss_pred HHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHH-HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042265 352 VGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIE-EALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEI 430 (490)
Q Consensus 352 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (490)
......|++++|.+.|.+....+ +-+... .+ ..+.+- .-..-++. . ....+..++..+...|++++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~--rG~~l~------~~-~~~~w~~~~r~~l~~---~-~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREW--RGPVLD------DL-RDFQFVEPFATALVE---D-KVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC--CSSTTG------GG-TTSTTHHHHHHHHHH---H-HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC--cccccc------cC-cchHHHHHHHHHHHH---H-HHHHHHHHHHHHHHCCCchH
Confidence 44567888888888888887632 111100 00 001111 00111111 0 34567788899999999999
Q ss_pred HHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHh-----cCCCCCCCce
Q 042265 431 AEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLD-----AGKIKKNAGC 483 (490)
Q Consensus 431 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 483 (490)
|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++. +.|+.|.|.+
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999999999999999999999999999999999999999974 3588887754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=2.4e-06 Score=62.96 Aligned_cols=93 Identities=10% Similarity=-0.049 Sum_probs=77.9
Q ss_pred HHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCC--CchHHHHHHHH
Q 042265 384 GCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHG---NVEIAEAAAEHVMKLKPED--GGVYKVLADVY 456 (490)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 456 (490)
..++..+...+++++|.+.|++.. ..| ++.++..++.++.+.+ ++++|+.+++++++.+|.+ ..++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 457778888999999999999865 333 8899999999998755 4557999999999987755 34788999999
Q ss_pred HhcCChHHHHHHHHHHhcCC
Q 042265 457 ANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 457 ~~~g~~~~A~~~~~~m~~~~ 476 (490)
.+.|++++|.+.|+++.+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999998743
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.14 E-value=4e-06 Score=66.15 Aligned_cols=65 Identities=5% Similarity=-0.030 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
....+..+..++.+.|++++|+..++++++++|+++.+|..++.+|.+.|++++|...|++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55677888899999999999999999999999999999999999999999999999999998864
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.04 E-value=1.7e-05 Score=62.19 Aligned_cols=113 Identities=9% Similarity=-0.063 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 042265 345 VTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI 424 (490)
Q Consensus 345 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (490)
..+......+.+.|++.+|...|++........+....- .......+ ...+|..+..+|.+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~------------~~~~~~~~-------~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK------------ESKASESF-------LLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH------------HHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh------------hhhhcchh-------HHHHHHhHHHHHHH
Confidence 344555556667777777777777666532211111000 00000000 23457778888999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 425 HGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 425 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
.|++++|+..++++++++|++..+|..++.+|...|++++|...|+++.+..
T Consensus 77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999987653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.92 E-value=5.2e-06 Score=63.35 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=46.2
Q ss_pred HHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChH
Q 042265 397 EEALEMIKKMP-MGG-DVFVWSGLLGGCRIHG-----------NVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWE 463 (490)
Q Consensus 397 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 463 (490)
++|+..|++.. ..| +..+|..++.+|...| ++++|.+.|+++++++|++...+..|... .
T Consensus 58 ~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ 130 (145)
T d1zu2a1 58 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------A 130 (145)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------H
Confidence 44444444432 222 5555555555554433 46889999999999999998666566554 3
Q ss_pred HHHHHHHHHhcCCC
Q 042265 464 DVVKIRRSLDAGKI 477 (490)
Q Consensus 464 ~A~~~~~~m~~~~~ 477 (490)
+|.+++.+..++|+
T Consensus 131 ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 131 KAPQLHAEAYKQGL 144 (145)
T ss_dssp THHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhc
Confidence 56666666666654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.00015 Score=53.62 Aligned_cols=101 Identities=6% Similarity=0.040 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042265 211 WGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK 290 (490)
Q Consensus 211 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 290 (490)
+..+...+.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|...++++++.. +.+...+..+..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~--- 81 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKA--- 81 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHH---
Confidence 4456667777788888888887777754 3356677777777777777777777777776543 2222223323322
Q ss_pred cCCHHHHHHHHhccCCCCeehHHHHHHHHHHcCChHHHHHHHHHHHH
Q 042265 291 CGYINTAIEIFESSQEKNLFTWNAMLVGLAMHGLGRLSLVYFSRMIE 337 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 337 (490)
|..+...+...+++++|++.|++...
T Consensus 82 ---------------------~~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 82 ---------------------YARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp ---------------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 33344555566667777777766554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=5.6e-05 Score=52.54 Aligned_cols=71 Identities=13% Similarity=0.014 Sum_probs=53.3
Q ss_pred HHHhhhhhcCCHHHHHHHHhhCC----C----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHH
Q 042265 385 CMADLLGRAGLIEEALEMIKKMP----M----GG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADV 455 (490)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~----~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 455 (490)
.+...+.+.|++++|..+|++.. . .+ ...++..+..++.+.|++++|+..++++++++|+++.++..+...
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 45556666666666666665432 1 11 356788899999999999999999999999999999888877543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.69 E-value=1.3e-05 Score=61.00 Aligned_cols=50 Identities=8% Similarity=0.109 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCC-----------hHHHHHHHHHHhcC
Q 042265 426 GNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADR-----------WEDVVKIRRSLDAG 475 (490)
Q Consensus 426 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~ 475 (490)
+.+++|+..++++++++|+++.+|..++.+|...|+ +++|.+.|++..+.
T Consensus 55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 456899999999999999999999999999987654 68888888887654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.68 E-value=7.8e-05 Score=57.46 Aligned_cols=63 Identities=11% Similarity=0.005 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----------CchHHHHHHHHHhcCChHHHHHHHHHHhc
Q 042265 412 VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED-----------GGVYKVLADVYANADRWEDVVKIRRSLDA 474 (490)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 474 (490)
...|+.+..+|...|++++|...+++++++.|.. ..++..++.+|...|++++|.+.|++..+
T Consensus 55 a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 55 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888999999999999999988743321 12577889999999999999999998764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.64 E-value=0.00014 Score=61.34 Aligned_cols=129 Identities=12% Similarity=0.006 Sum_probs=89.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
..+.|++++|+..+++.++.. +-+...+..+...++..|++++|...++...+. .+.+...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 346789999999999998864 336788888999999999999999999998873 33344555555555555555554
Q ss_pred HHHHHhh--CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHH
Q 042265 399 ALEMIKK--MPMGG-DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYK 450 (490)
Q Consensus 399 A~~~~~~--~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 450 (490)
+..-... ....| +...+......+...|+.++|.+.++++.+..|..+..++
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 4333222 11222 2333444455678889999999999999999888775543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=1.5e-05 Score=74.78 Aligned_cols=130 Identities=12% Similarity=0.056 Sum_probs=68.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 042265 221 SDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAKCGYINTAIEI 300 (490)
Q Consensus 221 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 300 (490)
.+.++.|+..+....+.. +++...+..+...+.+.|+.+.|...+....+.. ...++..+...+...|++++|...
T Consensus 99 ~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHH
Confidence 344555555444433321 2344466677777778888888887776665432 134566778888888888888888
Q ss_pred HhccCC--C-CeehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 042265 301 FESSQE--K-NLFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCS 355 (490)
Q Consensus 301 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 355 (490)
|++..+ | +...|+.+...+...|+..+|+..|.+..... .|...++..|...+.
T Consensus 175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence 887653 3 55688888888888888888888888887753 456667777766554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.00015 Score=50.33 Aligned_cols=65 Identities=11% Similarity=-0.057 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------CchHHHHHHHHHhcCChHHHHHHHHHHhcCC
Q 042265 412 VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPED-------GGVYKVLADVYANADRWEDVVKIRRSLDAGK 476 (490)
Q Consensus 412 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 476 (490)
+..+..++..+.+.|+++.|+..++++++..|.+ ..++..++.+|.+.|++++|...++++.+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 4455678889999999999999999999865543 3478899999999999999999999987653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.36 E-value=4.9e-05 Score=64.10 Aligned_cols=120 Identities=15% Similarity=0.018 Sum_probs=87.1
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMP-MGG-DVFVWSGLLGGCRIHGNVEIA 431 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 431 (490)
..+.|++++|...+++..+ ..|.+...+..++..|+..|++++|.+.++... ..| +...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4567999999999999998 677788999999999999999999999999865 334 556666665555544444433
Q ss_pred HHHHHHHHh-hCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 432 EAAAEHVMK-LKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 432 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
......... ..|++...+...+..+.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 322222111 23433344556677788999999999999988765
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.35 E-value=0.00094 Score=51.08 Aligned_cols=93 Identities=16% Similarity=-0.012 Sum_probs=55.8
Q ss_pred hhccCcHHHHHHHHHHhHHhhCCCCC----------chHHHHHHhhhhhcCCHHHHHHHHhhCC--------CCC-----
Q 042265 354 CSHAGLVDEARKLFDEMESVYGVSKE----------LKHYGCMADLLGRAGLIEEALEMIKKMP--------MGG----- 410 (490)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~----- 410 (490)
+...|++++|+..|++..+.....|+ ...|+.+..+|...|++++|...+++.. ..+
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 33445555555555555443221121 1345556666666666666665554421 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCC
Q 042265 411 DVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDG 446 (490)
Q Consensus 411 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 446 (490)
....+..+..+|...|++++|+..|++++++.|...
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 233567788999999999999999999999655443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.052 Score=49.20 Aligned_cols=80 Identities=14% Similarity=-0.009 Sum_probs=40.4
Q ss_pred cCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 042265 357 AGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGG--DVFVWSGLLGGCRIHGNVEIAEAA 434 (490)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 434 (490)
.+..+.+...+...... ..+.......+......+++..+...++.+...+ ...-..=+..++...|+.+.|...
T Consensus 265 ~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 44445555555544432 1222333333334445566666666666665443 233334455556666666666666
Q ss_pred HHHHH
Q 042265 435 AEHVM 439 (490)
Q Consensus 435 ~~~~~ 439 (490)
|..+.
T Consensus 342 ~~~~a 346 (450)
T d1qsaa1 342 LHQLM 346 (450)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.29 E-value=0.00088 Score=52.49 Aligned_cols=71 Identities=7% Similarity=-0.059 Sum_probs=53.5
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----cCCCCChhh
Q 042265 209 VSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIEL-----NQIRVDSFL 280 (490)
Q Consensus 209 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 280 (490)
..+..++.++...|++++|+..++.+++.. +-+...|..++.++...|+.++|.+.|+++.+ .|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 456677788888888888888888887754 34667788888888888888888888877643 477777654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.68 E-value=0.012 Score=43.21 Aligned_cols=111 Identities=8% Similarity=-0.130 Sum_probs=66.8
Q ss_pred cHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 042265 359 LVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEAA 434 (490)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 434 (490)
|+++|.++|++..+. +. ......|.. ....+.++|.+++++....+++.....+...|.. ..+.++|.++
T Consensus 8 d~~~A~~~~~kaa~~-g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL-NE---MFGCLSLVS--NSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHT-TC---TTHHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-CC---hhhhhhhcc--ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHH
Confidence 455666666665553 32 122222222 2334566777777666555666666666666553 4567788888
Q ss_pred HHHHHhhCCCCCchHHHHHHHHHh----cCChHHHHHHHHHHhcCCC
Q 042265 435 AEHVMKLKPEDGGVYKVLADVYAN----ADRWEDVVKIRRSLDAGKI 477 (490)
Q Consensus 435 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 477 (490)
|+++.+.. ++.+...|+..|.. ..+.++|.+++++..+.|.
T Consensus 82 ~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 82 YSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 88877643 33466777777766 3467788888887776664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.07 E-value=0.052 Score=39.48 Aligned_cols=112 Identities=11% Similarity=-0.073 Sum_probs=79.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhh----cCCHHH
Q 042265 323 GLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGR----AGLIEE 398 (490)
Q Consensus 323 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 398 (490)
.++++|+++|++..+.|.. . ....+. .....+.++|.+++++..+. + ++.....|...|.. ..+.++
T Consensus 7 kd~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHH
Confidence 3567888888888777632 2 222222 34456788999999888774 3 34444555555543 457889
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCC
Q 042265 399 ALEMIKKMPMGGDVFVWSGLLGGCRI----HGNVEIAEAAAEHVMKLKP 443 (490)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 443 (490)
|.++|++....+++.....|...|.. ..+.++|.++++++.+...
T Consensus 78 A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 78 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 99999988777788888888887765 4689999999999887443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.05 E-value=0.13 Score=35.97 Aligned_cols=141 Identities=9% Similarity=-0.016 Sum_probs=99.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHhhhhhcCCHHH
Q 042265 319 LAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMADLLGRAGLIEE 398 (490)
Q Consensus 319 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 398 (490)
+...|..++..+++.+.... .+..-|+.++.-....-+-+-..++++.+-+.+.+.|-.. ...++.++...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhcc---
Confidence 45568888888888887763 3556677777777777777777888887766433333221 1223333333321
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCchHHHHHHHHHhcCChHHHHHHHHHHhcCCCC
Q 042265 399 ALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGVYKVLADVYANADRWEDVVKIRRSLDAGKIK 478 (490)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 478 (490)
+...++..+.....+|+-+.-.++++.+.+-...++.....++.+|.+.|...++.+++.+.-++|++
T Consensus 85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 34455666777888999999999999988855556778999999999999999999999999888864
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.94 E-value=0.53 Score=42.15 Aligned_cols=343 Identities=7% Similarity=-0.118 Sum_probs=195.0
Q ss_pred CCCChhHHHHhhccCCCCCcccHHHHHHHHHcCCCchhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHH
Q 042265 57 TTDPLSYALSIFNNIPYPSTFSYNTIIRAHTLFSSPLNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQ 136 (490)
Q Consensus 57 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 136 (490)
+.++++.....+..-+ ++...-.....+....|+...|...+..+-..|. -..+....++..
T Consensus 84 ~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-----------------~~p~~c~~l~~~ 145 (450)
T d1qsaa1 84 RREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-----------------SQPNACDKLFSV 145 (450)
T ss_dssp HTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-----------------CCCTHHHHHHHH
T ss_pred hccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-----------------CCchHHHHHHHH
Confidence 4566666555554322 2333334555666666666666666655554431 122223334444
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCeehHHHHHH
Q 042265 137 VLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYRDVVSCNTLIDGYVKAGDLAHARQLFDRMPFRDAVSWGTLVA 216 (490)
Q Consensus 137 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 216 (490)
+.+.| ..+...+-.-+......|+...|..+...+...........+........+ ........ .+......+..
T Consensus 146 ~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~---~~~~~~~~-~~~~~~~~~~~ 220 (450)
T d1qsaa1 146 WRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTTG-ATDFTRQMAAV 220 (450)
T ss_dssp HHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHSC-CCHHHHHHHHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhH---HHHHhcCC-CChhhhHHHHH
Confidence 44444 445555555666666778888888887776554444555555554433333 22222222 22222222333
Q ss_pred HHHh--cCChhHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHccCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 042265 217 GYAQ--SDQCEEAIQLFCNMMDLDIKPDNIALVS----ALSACARLGELEQGKNIHRYIELNQIRVDSFLSTGLVDFYAK 290 (490)
Q Consensus 217 ~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 290 (490)
++.+ ..+.+.|...+........ .+...... +.......+..+.+..++......+ .+.......+.....
T Consensus 221 ~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~ 297 (450)
T d1qsaa1 221 AFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALG 297 (450)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHH
Confidence 3322 3578888888888765432 22222222 2223344566778888777766554 344455556666777
Q ss_pred cCCHHHHHHHHhccCCCC---eehHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHH
Q 042265 291 CGYINTAIEIFESSQEKN---LFTWNAMLVGLAMHGLGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLF 367 (490)
Q Consensus 291 ~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (490)
.+++..+...++.+.... ..-.-=+..++...|+.+.|...|..... .++ -|..|... +.|..-.
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~~----- 365 (450)
T d1qsaa1 298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAAQ--RIGEEYE----- 365 (450)
T ss_dssp HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHHH--HTTCCCC-----
T ss_pred cCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHHH--HcCCCCC-----
Confidence 899999999999887532 23334567888899999999999998864 233 33333222 1221100
Q ss_pred HHhHHhhCCCCC-chH-----HHHHHhhhhhcCCHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042265 368 DEMESVYGVSKE-LKH-----YGCMADLLGRAGLIEEALEMIKKMPMGGDVFVWSGLLGGCRIHGNVEIAEAAAEHVMK 440 (490)
Q Consensus 368 ~~~~~~~~~~~~-~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 440 (490)
+... ..+.+ ... -..-+..+...|+...|.+.+..+....+......+.....+.|.++.|+....++..
T Consensus 366 --~~~~-~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 366 --LKID-KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp --CCCC-CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred --CCcC-CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence 0000 00000 011 1123556778899999999888766555777778888888999999999988877643
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.85 E-value=0.16 Score=35.47 Aligned_cols=138 Identities=10% Similarity=-0.074 Sum_probs=86.1
Q ss_pred hccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHHhcccC-CchhHHHHHHHHHhcCCHHHHHHHH
Q 042265 122 SQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMHVYCVFHRLRDAQELFDEILYR-DVVSCNTLIDGYVKAGDLAHARQLF 200 (490)
Q Consensus 122 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 200 (490)
...|..++..+++.+...+. +..-||-+|--....-+-+...++++.+-+. |. ..++++......+
T Consensus 13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDl----------s~C~Nlk~vv~C~ 79 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECG 79 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHH
T ss_pred HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCc----------hhhhcHHHHHHHH
Confidence 34466666666666666532 3344444444444455555555555554221 21 1233444444444
Q ss_pred hhCCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 042265 201 DRMPFRDAVSWGTLVAGYAQSDQCEEAIQLFCNMMDLDIKPDNIALVSALSACARLGELEQGKNIHRYIELNQI 274 (490)
Q Consensus 201 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 274 (490)
-.+.. +....+..+....++|+-+.-.+++.++.+.+ +|++.....+..+|-+.|...++..++.++.+.|+
T Consensus 80 ~~~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 80 VINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 33322 34556667778888888888888888877654 77888888888899999999999888888888874
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.63 E-value=0.025 Score=40.04 Aligned_cols=71 Identities=11% Similarity=0.031 Sum_probs=42.8
Q ss_pred CCchHHHHHHhhhhhc---CCHHHHHHHHhhCC-CCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCCch
Q 042265 378 KELKHYGCMADLLGRA---GLIEEALEMIKKMP-MGG-D-VFVWSGLLGGCRIHGNVEIAEAAAEHVMKLKPEDGGV 448 (490)
Q Consensus 378 ~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~-~~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 448 (490)
++..+--....++.+. .+.++++.+|+++. ..| + ...+..+..+|.+.|++++|.+.++++++++|++..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 3344444445555544 34456777776654 222 2 2455666777777777777777777777777777643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.86 E-value=0.13 Score=36.27 Aligned_cols=66 Identities=6% Similarity=-0.092 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCCCC-chHHHHHHHHHhcCChHHHHHHHHHHhcC
Q 042265 410 GDVFVWSGLLGGCRIHG---NVEIAEAAAEHVMKLKPEDG-GVYKVLADVYANADRWEDVVKIRRSLDAG 475 (490)
Q Consensus 410 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 475 (490)
+.+.+--.+..++.++. +.++++.+++++.+.+|.+. ..+..|+.+|.+.|++++|.+.++++.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46667667777777654 45688888888888887654 57788888888999999999888887654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.80 E-value=0.27 Score=32.48 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCcHHHHHHHHHHhHHhhCCCCCchHHHHHHh
Q 042265 324 LGRLSLVYFSRMIEARIKPDGVTILGALVGCSHAGLVDEARKLFDEMESVYGVSKELKHYGCMAD 388 (490)
Q Consensus 324 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (490)
+.-++.+-++.+....+.|++......+++|.+.+++..|.++++.++.+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 44566677777777889999999999999999999999999999999885 3344556766654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.04 E-value=1.2 Score=29.33 Aligned_cols=61 Identities=15% Similarity=0.074 Sum_probs=41.7
Q ss_pred hhHHHHHHHhhhCCCCCCcccHHHHHHHHhccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 042265 93 LNAVVLFSQMRTVSIPPDFYSFPFLLRACSQLCSHSLAQTIHSQVLKLGFICDVFVLNSLMH 154 (490)
Q Consensus 93 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 154 (490)
-++.+-++.+....+.|++....+.+++|-+.+++..|.++++..+... .++...|..+++
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 3455566666666777888888888888888888888888887776543 344556655543
|