Citrus Sinensis ID: 042298

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MSLCCAQAATGKVFLDERTKLSATTLNKNNNVKREDDTRVTSLSFGISEAAGGLRNGKCNFSPRPRPLLCRISQLEVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQDSP
Secondary Structure (PSIPRED)
ccccccccccccEEEcccccccHHHcccccccccccccEEEEEccccccccccccccccccccccccccccccHHHHHccHHHHHHHHHHHHHHcHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccEEEccccHccHHHHccccccccccccEEEEccccccHcccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHccHEEEEccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mslccaqaatgKVFLDERTKLSATtlnknnnvkreddtrvtSLSFGiseaagglrngkcnfsprprpllcrisqlevadlapstsAAYGILLLLGGLFAFAksaskgslfggLTGAALMASAFFlmqspdtkAIGDALGFGSAFLFSSVFGIRLVatqrpipagpllglSTCALAVFISAYLQDSP
Flexible Loop (DISEMBL)
mslccaqaatgkvfldertklsattlnknnnvkreddtrvtSLSFGiseaagglrngkcnFSPRPRPLLCRISQLEVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQDSP
Low Complexity Region (SEG)
MSLCCAQAATGKVFLDERTKLSATTLNKNNNVKREDDTRVTSLSFGISEAAGGLRNGKCNFSPRPRPLLCRISQLEVADLAPSTSAAYGIllllgglfafaKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQDSP
Disordered region (IsUnstruct)
***CCAQAATGKVFLD****************************FGISEAAGGLRNGKCNFSPRPRPLLCRISQLEVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYL****
Disordered Region (DISOPRED)
*******AATGKVFLDERTKLSATTLNKNNNVKREDDTRVTSL**********************************ADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQD**
Disordered Region (DISEMBL)
MSLCCAQAATGKVFLDERTKLSATTLNKNNNVKREDDTRVTSLSFGISEAAGGLRNGKCNFSPRPRPLLCRISQLEVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQDSP
Disordered Region (DISPRO)
*SLCCAQAATGKVFLDERTKLSATTLNKNNNVKREDDTRVTSLSFGISEA**************PRPLLCRISQLEVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQDS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSLCCAQAATGKVFLDERTKLSATTLNKNNNVKREDDTRVTSLSFGISEAAGGLRNGKCNFSPRPRPLLCRISQLEVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQDSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
118488581	175	unknown [Populus trichocarpa]	0.639	0.68	0.745	8e-42
224117688	171	predicted protein [Populus trichocarpa]	0.693	0.754	0.688	4e-39
225426466	661	PREDICTED: wall-associated receptor kina	0.580	0.163	0.740	2e-36
297742498	436	unnamed protein product [Vitis vinifera]	0.580	0.247	0.740	2e-36
21327035	189	putative protein kinase [Saussurea medus	0.612	0.603	0.646	2e-30
125549432	160	hypothetical protein OsI_17074 [Oryza sa	0.655	0.762	0.607	5e-29
116309683	160	H0404F02.7 [Oryza sativa Indica Group]	0.655	0.762	0.607	6e-29
297846312	525	hypothetical protein ARALYDRAFT_313871 [	0.763	0.270	0.535	6e-29
297603221	160	Os04g0577800 [Oryza sativa Japonica Grou	0.655	0.762	0.607	2e-28
12322574	528	protein kinase, putative [Arabidopsis th	0.591	0.208	0.627	2e-28

>gi|118488581|gb|ABK96103.1| unknown [Populus trichocarpa]

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 91/122 (74%), Positives = 107/122 (87%), Gaps = 3/122 (2%)

Query: 64  RPRPLLCRISQLEVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAF 123
           R R L C+    ++AD+AP TSAAYG++LL GGLFAF+KS SKGSLFGGLTGAA+M +A+
Sbjct: 51  RGRSLGCKC---QLADIAPVTSAAYGVILLGGGLFAFSKSGSKGSLFGGLTGAAVMGTAY 107

Query: 124 FLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQ 183
           FLMQ+P+TKAIGD+LGFGSAFLFSSVFGIRL ATQ+ IP+G LLGLS CALAVFI+AYLQ
Sbjct: 108 FLMQAPETKAIGDSLGFGSAFLFSSVFGIRLAATQKLIPSGLLLGLSICALAVFIAAYLQ 167

Query: 184 DS 185
           DS
Sbjct: 168 DS 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117688|ref|XP_002317643.1| predicted protein [Populus trichocarpa] gi|222860708|gb|EEE98255.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/138 (68%), Positives = 112/138 (81%), Gaps = 9/138 (6%)

Query: 54  LRNGKCNFSP-----RPRPLLCRISQLEVADLAPSTSAAYGILLLLGGLFAFAKSASKGS 108
           LRNG+ + S      + R L C+    ++ADLAP TSAAYG++LL GGLFAF KS SKGS
Sbjct: 36  LRNGRRSNSSATCISKRRRLGCKC---QLADLAPVTSAAYGVILLGGGLFAFGKSGSKGS 92

Query: 109 LFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLG 168
           LFGGLTGAALM +A+FLMQ+P+TKAIGD+LGFGSAFLFSSVFGIRL ATQ+ IP+G LL 
Sbjct: 93  LFGGLTGAALMGTAYFLMQAPETKAIGDSLGFGSAFLFSSVFGIRLAATQKLIPSGLLLV 152

Query: 169 LSTCALAVFISAY-LQDS 185
           LS CAL+VFISAY LQD+
Sbjct: 153 LSICALSVFISAYLLQDN 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426466|ref|XP_002270815.1| PREDICTED: wall-associated receptor kinase-like 10-like [Vitis vinifera]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 93/108 (86%)

Query: 77  VADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGD 136
           ++DLAP+TSAAYG +LL GG+FA+ +S SKGSLFGG TGAALMA+A+ LMQ P TK IGD
Sbjct: 546 LSDLAPATSAAYGAMLLGGGVFAYTRSGSKGSLFGGFTGAALMATAYLLMQVPKTKDIGD 605

Query: 137 ALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQD 184
           ALGFGSAFLFSSVFGIRL AT++ +P+G LLGLS  AL VFISAYLQD
Sbjct: 606 ALGFGSAFLFSSVFGIRLAATRKLVPSGLLLGLSIFALTVFISAYLQD 653

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742498|emb|CBI34647.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (396), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 93/108 (86%)

Query: 77  VADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGD 136
           ++DLAP+TSAAYG +LL GG+FA+ +S SKGSLFGG TGAALMA+A+ LMQ P TK IGD
Sbjct: 321 LSDLAPATSAAYGAMLLGGGVFAYTRSGSKGSLFGGFTGAALMATAYLLMQVPKTKDIGD 380

Query: 137 ALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQD 184
           ALGFGSAFLFSSVFGIRL AT++ +P+G LLGLS  AL VFISAYLQD
Sbjct: 381 ALGFGSAFLFSSVFGIRLAATRKLVPSGLLLGLSIFALTVFISAYLQD 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21327035|gb|AAM48132.1|AF509337_1 putative protein kinase [Saussurea medusa]

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 91/116 (78%), Gaps = 2/116 (1%)

Query: 69  LCRISQLEVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQS 128
           LC+ SQL V D AP+ SA Y +LLL GGLFA+ KS SKGSLFGGLTGAAL++ A++LMQ+
Sbjct: 74  LCK-SQL-VQDFAPAASAGYAVLLLGGGLFAYNKSGSKGSLFGGLTGAALLSIAYYLMQA 131

Query: 129 PDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQD 184
           P+TK  GDAL FG++ LF+ +FGIRL AT++ IPAG LLGLS    AV  SAYLQD
Sbjct: 132 PETKETGDALAFGASLLFACIFGIRLAATRKVIPAGFLLGLSISLTAVTYSAYLQD 187

Source: Saussurea medusa

Species: Saussurea medusa

Genus: Saussurea

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125549432|gb|EAY95254.1| hypothetical protein OsI_17074 [Oryza sativa Indica Group]

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 99/130 (76%), Gaps = 8/130 (6%)

Query: 63  PRP----RPLLCRISQL----EVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLT 114
           PRP    RP   R   L     V++LAP+ SAAYG+LLL GG FA+ +S SKGS+FGGL+
Sbjct: 29  PRPSAVARPGRSRRRALLRCSAVSELAPTASAAYGVLLLGGGAFAYVRSGSKGSIFGGLS 88

Query: 115 GAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCAL 174
           G+ALM  A++LMQSP+TKA+GDA+GFGSAFLF+SVFGIRL  T++ +P+G LL LS  AL
Sbjct: 89  GSALMGIAYYLMQSPETKALGDAVGFGSAFLFASVFGIRLYNTRKLVPSGLLLVLSLGAL 148

Query: 175 AVFISAYLQD 184
            VF SAY+QD
Sbjct: 149 GVFYSAYMQD 158

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116309683|emb|CAH66731.1| H0404F02.7 [Oryza sativa Indica Group]

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 99/130 (76%), Gaps = 8/130 (6%)

Query: 63  PRP----RPLLCRISQL----EVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLT 114
           PRP    RP   R   L     V++LAP+ SAAYG+LLL GG FA+ +S SKGS+FGGL+
Sbjct: 29  PRPSAVARPGRSRRRALLRCSAVSELAPTASAAYGVLLLGGGAFAYVRSGSKGSIFGGLS 88

Query: 115 GAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCAL 174
           G+ALM  A++LMQSP+TKA+GDA+GFGSAFLF+SVFGIRL  T++ +P+G LL LS  AL
Sbjct: 89  GSALMGIAYYLMQSPETKALGDAVGFGSAFLFASVFGIRLYNTRKLVPSGLLLVLSLGAL 148

Query: 175 AVFISAYLQD 184
            VF SAY+QD
Sbjct: 149 GVFYSAYMQD 158

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297846312|ref|XP_002891037.1| hypothetical protein ARALYDRAFT_313871 [Arabidopsis lyrata subsp. lyrata] gi|297336879|gb|EFH67296.1| hypothetical protein ARALYDRAFT_313871 [Arabidopsis lyrata subsp. lyrata]

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/153 (53%), Positives = 108/153 (70%), Gaps = 11/153 (7%)

Query: 40  VTSLSFGISEAAGGLRN--GKCNFSPRPRP-----LLCRISQLEVADLAPSTSAAYGILL 92
           V S   G S + GG RN  G  N S + +      L C+    E+++LAP  SA YG+LL
Sbjct: 364 VRSTKLGRSVSNGG-RNWSGLTNLSEKSKTERGNGLSCKA---ELSELAPVVSATYGVLL 419

Query: 93  LLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGI 152
           L GGLFA++KS SKGSLFGGLTG+ LMASA++L QSP+T+ +GD +G G+AFLFSSVFG 
Sbjct: 420 LGGGLFAYSKSGSKGSLFGGLTGSVLMASAYYLTQSPETRVLGDTIGLGAAFLFSSVFGF 479

Query: 153 RLVATQRPIPAGPLLGLSTCALAVFISAYLQDS 185
           RL ++++P+PAGPLL LS   L+ F+ AY+ DS
Sbjct: 480 RLASSRKPVPAGPLLLLSIGMLSFFVMAYMHDS 512

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297603221|ref|NP_001053635.2| Os04g0577800 [Oryza sativa Japonica Group] gi|215769422|dbj|BAH01651.1| unnamed protein product [Oryza sativa Japonica Group] gi|255675710|dbj|BAF15549.2| Os04g0577800 [Oryza sativa Japonica Group]

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 98/130 (75%), Gaps = 8/130 (6%)

Query: 63  PRP----RPLLCRISQL----EVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLT 114
           PRP    RP   R   L     V++LAP+ SAAYG LLL GG FA+ +S SKGS+FGGL+
Sbjct: 29  PRPSAVARPGRSRRRALLRCSAVSELAPTASAAYGALLLGGGAFAYVRSGSKGSIFGGLS 88

Query: 115 GAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCAL 174
           G+ALM  A++LMQSP+TKA+GDA+GFGSAFLF+SVFGIRL  T++ +P+G LL LS  AL
Sbjct: 89  GSALMGIAYYLMQSPETKALGDAVGFGSAFLFASVFGIRLYNTRKLVPSGLLLVLSLGAL 148

Query: 175 AVFISAYLQD 184
            VF SAY+QD
Sbjct: 149 GVFYSAYMQD 158

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12322574|gb|AAG51288.1|AC027035_11 protein kinase, putative [Arabidopsis thaliana]

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/110 (62%), Positives = 91/110 (82%)

Query: 76  EVADLAPSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIG 135
           E+++LAP  SA YG+LLL GGLFA++KS SKGSLFGGLTG+ LMASA+FL +SP+T+ +G
Sbjct: 406 ELSELAPVVSATYGVLLLGGGLFAYSKSGSKGSLFGGLTGSVLMASAYFLTKSPETRVLG 465

Query: 136 DALGFGSAFLFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQDS 185
           D +G G+AFLFSSVFG RL ++++P+PAGPLL LS   L+ F+ AY+ DS
Sbjct: 466 DTIGLGAAFLFSSVFGFRLASSRKPVPAGPLLLLSIGMLSFFVMAYMHDS 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
TAIR|locus:505006165	177	AT1G33265 "AT1G33265" [Arabido	0.768	0.807	0.480	2.7e-29

TAIR|locus:505006165 AT1G33265 "AT1G33265" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 73/152 (48%), Positives = 97/152 (63%)

Query:    40 VTSLSFGISEAAGGLRN--GKCNFSPRPRPL----LCRISQLEVADLAPSTSAAYGIXXX 93
             V S   G S + GG RN  G    S + +      LC   + E+++LAP  SA YG+   
Sbjct:    16 VRSTKLGRSVSNGG-RNWSGLTKLSEKSKTKRGNGLC--CKAELSELAPVVSATYGVLLL 72

Query:    94 XXXXXXXXKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIR 153
                     KS SKGSLFGGLTG+ LMASA+FL +SP+T+ +GD +G G+AFLFSSVFG R
Sbjct:    73 GGGLFAYSKSGSKGSLFGGLTGSVLMASAYFLTKSPETRVLGDTIGLGAAFLFSSVFGFR 132

Query:   154 LVATQRPIPAGPLLGLSTCALAVFISAYLQDS 185
             L ++++P+PAGPLL LS   L+ F+ AY+ DS
Sbjct:   133 LASSRKPVPAGPLLLLSIGMLSFFVMAYMHDS 164


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      186       175   0.00078  109 3  11 22  0.39    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  512 (54 KB)
  Total size of DFA:  113 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.03u 0.16s 14.19t   Elapsed:  00:00:01
  Total cpu time:  14.03u 0.16s 14.19t   Elapsed:  00:00:01
  Start:  Fri May 10 02:10:29 2013   End:  Fri May 10 02:10:30 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	186
pfam03647	96	pfam03647, Tmemb_14, Transmembrane proteins 14C	2e-12
COG5548	105	COG5548, COG5548, Small integral membrane protein	7e-07

>gnl|CDD|202717 pfam03647, Tmemb_14, Transmembrane proteins 14C

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 85  SAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAF 144
             AY  L+ +GG+  +AK+ S  SL  GL   AL+    +L+        G  L   ++ 
Sbjct: 4   GIAYAALVAIGGIMGYAKAGSVPSLIAGLIFGALLGYGAYLLSQNQPY--GLELALLASA 61

Query: 145 LFSSVFGIRLVATQRPIPAGPLLGLSTCALAVFI 178
           + + V G R + T++ +PAG +LGLS   LA + 
Sbjct: 62  VLAGVMGPRYIKTRKFMPAGLVLGLSAAMLAFYY 95

This family of short membrane proteins are as yet uncharacterized. Length = 96

>gnl|CDD|227835 COG5548, COG5548, Small integral membrane protein [Function unknown]

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 4/87 (4%)

Query: 87  AYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLF 146
           A  +L  +GGL  + +  S+ SL  G+    L+  A +L     T  +  A    SA L 
Sbjct: 9   ALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQGQTWGLILATV-VSAALL 67

Query: 147 SSVFGIRLVATQRPIPAG--PLLGLST 171
              F +RLV +++P+PAG   L G+ +
Sbjct: 68  VF-FALRLVRSRKPVPAGLTTLGGMLS 93

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
KOG4267	110	consensus Predicted membrane protein [Function unk	99.92
PF03647	96	Tmemb_14: Transmembrane proteins 14C; InterPro: IP	99.91
COG5548	105	Small integral membrane protein [Function unknown]	99.85

>KOG4267 consensus Predicted membrane protein [Function unknown]

Probab=99.92  E-value=4.4e-25  Score=171.92  Aligned_cols=95  Identities=26%  Similarity=0.406  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHHHHHHHh-cCCCCchhhHHHHHH-HHHHHHHHHHHHHHhcCC
Q 042298           82 PSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLM-QSPDTKAIGDALGFG-SAFLFSSVFGIRLVATQR  159 (186)
Q Consensus        82 ~~~g~~Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~~g~~ll-~~~~~~~~G~~Lal~-iS~vL~~vmg~R~~kTrK  159 (186)
                      ..++++|++|+.+||+|||.|+||+|||++|+..+++++.+++.+ +++   +.+..+++. +|++|+.+|++||.+|||
T Consensus         4 ~~f~~~y~~Lv~~GGliGY~kkgSi~SL~aGl~~G~l~g~~s~~l~~~~---~~~~~~~l~~~s~~L~gvmg~R~~~s~K   80 (110)
T KOG4267|consen    4 DCFGIPYAALVTVGGLIGYLKKGSIPSLAAGLLFGALAGYGSYLLSRDK---KGGSLVALGGTSAALLGVMGQRFYRSRK   80 (110)
T ss_pred             hhhhhhHHHHHHhcceeeeeecCCcchHHHHHHHHHHHHHHHHHhhcCC---CcCchhHHHHHHHHHHHHHhhhhhccCC
Confidence            368999999999999999999999999999986667777666666 443   334566677 799999999999999999


Q ss_pred             CcchhHHHHHHHHHHHHHHHH
Q 042298          160 PIPAGPLLGLSTCALAVFISA  180 (186)
Q Consensus       160 ~MPAGLvaiLSl~ml~~fy~~  180 (186)
                      +||+|+++.+|++|+ +||.+
T Consensus        81 ~mPaglva~~s~~m~-~~Y~y  100 (110)
T KOG4267|consen   81 IMPAGLVAGISLLMT-CFYLY  100 (110)
T ss_pred             ccchHHHHHHHHHHH-HHHHH
Confidence            999999999999999 55544

>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised

Probab=99.91  E-value=3e-25  Score=167.23  Aligned_cols=91  Identities=32%  Similarity=0.495  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCcch
Q 042298           84 TSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPIPA  163 (186)
Q Consensus        84 ~g~~Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~~g~~ll~~~~~~~~G~~Lal~iS~vL~~vmg~R~~kTrK~MPA  163 (186)
                      ++++|++++++||++||+|+||+|||++|+..++++..+.++.+  +++++++.+++++|++|+.+|++||.||+|+||+
T Consensus         3 ~~~~y~~ll~~GG~~Gy~k~gS~~SLiaG~~~G~ll~~~~~~~~--~~~~~~~~~~l~~s~~L~~~m~~R~~~t~k~~Pa   80 (96)
T PF03647_consen    3 LAIPYGALLAVGGIMGYVKKGSKPSLIAGVGFGALLLYAGYLSL--TNQKWGSELALAISAVLAGVMGYRYIKTRKFMPA   80 (96)
T ss_dssp             HCHHHHHHHHHHHHHHCTSS--CHCHHHHHHHHHHHHHHHCCCS---STHHCCHHHHHHHHHHHHCCTSSS-SSSSSCCC
T ss_pred             hhHHHHHHHHHhhHHHhHhccchhHHHHHHHHHHHHHHHHHHhh--ccCCccHHHHHHHHHHHHHHHHHHHHHcCCCccH
Confidence            56899999999999999999999999999755555555555444  2247899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHH
Q 042298          164 GPLLGLSTCALAV  176 (186)
Q Consensus       164 GLvaiLSl~ml~~  176 (186)
                      |+++++|.+|+++
T Consensus        81 gl~~~~s~~~~~~   93 (96)
T PF03647_consen   81 GLMALLSGAMLAF   93 (96)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999943

; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.

>COG5548 Small integral membrane protein [Function unknown]

Probab=99.85  E-value=2e-21  Score=149.30  Aligned_cols=98  Identities=23%  Similarity=0.373  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHH-HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 042298           83 STSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMA-SAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPI  161 (186)
Q Consensus        83 ~~g~~Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~-~g~~ll~~~~~~~~G~~Lal~iS~vL~~vmg~R~~kTrK~M  161 (186)
                      -.+++|+.|..+||+|||.||+|++||++|++.|++++ ++|++++++   ++|+++++..|++|.++++.|+++|||||
T Consensus         5 ~~A~~ls~L~tiGGliGY~rk~S~vSL~sG~~~G~~~~~A~yL~~~g~---~~Gl~~A~~~s~~Ll~~~~~R~~~sRKpv   81 (105)
T COG5548           5 TAAIALSMLATIGGLIGYFRKNSQVSLLSGVFSGLLLFVAAYLQLQGQ---TWGLILATVVSAALLVFFALRLVRSRKPV   81 (105)
T ss_pred             hHHHHHHHHHHhhhHHHHHhcCCchhhHHHHHHhHHHHHHHHHHHcCc---ccCeehHHHHHHHHHHhcchhccccCCCc
Confidence            35788999999999999999999999999987666666 555555665   68999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhcc
Q 042298          162 PAGPLLGLSTCALAVFISAYLQD  184 (186)
Q Consensus       162 PAGLvaiLSl~ml~~fy~~ylq~  184 (186)
                      |+++++ ++.....+||..|.+.
T Consensus        82 P~~Lt~-lgg~~s~y~y~~~~~~  103 (105)
T COG5548          82 PAGLTT-LGGMLSLYVYVNQMVA  103 (105)
T ss_pred             chHHHH-Hhhhhhhhheeeeecc
Confidence            999988 5555555888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
2los_A	121	Transmembrane protein 14C; paramagnetic relaxation	4e-11
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	9e-10

>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens} Length = 121

 Score = 56.6 bits (136), Expect = 4e-11
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 3/99 (3%)

Query: 87  AYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLF 146
            Y  L+  GG+  + K+ S  SL  GL   +L     + +           +   ++   
Sbjct: 25  GYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQ---DPRNVWVFLATSGTL 81

Query: 147 SSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYLQDS 185
           + + G+R   + + +PAG + G S   +A    +     
Sbjct: 82  AGIMGMRFYHSGKFMPAGLIAGASLLMVAKVGVSMFNRP 120

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A Length = 108

 Score = 52.8 bits (126), Expect = 9e-10
 Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 87  AYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLF 146
            Y  L+  G +F + +     SL  GL    L     + + +         +   +AF  
Sbjct: 16  GYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYGAYRVSNDKR---DVKVSLFTAFFL 72

Query: 147 SSVFGIRLVATQRPIPAGPLLGLSTCALAVFISAYL 182
           +++ G+R   +++ +PAG + GLS   +   +   L
Sbjct: 73  ATIMGVRFKRSKKIMPAGLVAGLSLMMILRLVLLLL 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	99.85
2los_A	121	Transmembrane protein 14C; paramagnetic relaxation	99.84

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A

Probab=99.85  E-value=3.4e-26  Score=175.91  Aligned_cols=94  Identities=21%  Similarity=0.421  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 042298           82 PSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPI  161 (186)
Q Consensus        82 ~~~g~~Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~~g~~ll~~~~~~~~G~~Lal~iS~vL~~vmg~R~~kTrK~M  161 (186)
                      .+.+++||+++++||++||+|+||+|||++|+..+++++.+.++++++  ++ ++++++++|++|+++|++||++|+|+|
T Consensus        11 ~~~~~~yg~Ll~~GGi~GY~k~gS~~SL~aG~~~G~ll~~~~~~~~~~--~~-~~~l~l~~S~~L~~~m~~R~~~t~K~m   87 (108)
T 2loo_A           11 DLIGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYGAYRVSND--KR-DVKVSLFTAFFLATIMGVRFKRSKKIM   87 (108)
Confidence            567899999999999999999999999999986666667666655332  23 889999999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHH
Q 042298          162 PAGPLLGLSTCALAVFIS  179 (186)
Q Consensus       162 PAGLvaiLSl~ml~~fy~  179 (186)
                      |+|+++++|++|+ +||.
T Consensus        88 PaGl~a~lS~~m~-~~y~  104 (108)
T 2loo_A           88 PAGLVAGLSLMMI-LRLV  104 (108)
Confidence            9999999999999 5554

>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}

Probab=99.84  E-value=5.1e-26  Score=178.24  Aligned_cols=99  Identities=19%  Similarity=0.260  Sum_probs=83.3

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhcCChhHhHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 042298           82 PSTSAAYGILLLLGGLFAFAKSASKGSLFGGLTGAALMASAFFLMQSPDTKAIGDALGFGSAFLFSSVFGIRLVATQRPI  161 (186)
Q Consensus        82 ~~~g~~Yg~LlavGGi~GYvKkGS~pSLiaGl~ggaLl~~g~~ll~~~~~~~~G~~Lal~iS~vL~~vmg~R~~kTrK~M  161 (186)
                      .+.+++||+|+++||++||+|+||+|||++|+..|++++.+.++++++.  + +.++++++|++|+++|+.||++|+|+|
T Consensus        20 ~~~~~~yg~Ll~~GGiiGY~k~gS~~SLiaGl~~G~l~~~~a~~~~~~~--~-~~~l~l~~S~~L~~~mg~R~~~t~K~m   96 (121)
T 2los_A           20 HWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDP--R-NVWVFLATSGTLAGIMGMRFYHSGKFM   96 (121)
Confidence            5688999999999999999999999999999866666776666664332  2 567888999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHhc
Q 042298          162 PAGPLLGLSTCALAVFISAYLQ  183 (186)
Q Consensus       162 PAGLvaiLSl~ml~~fy~~ylq  183 (186)
                      |+|+++++|++|++.+...+++
T Consensus        97 PaGlva~lS~~m~~~~~~~ll~  118 (121)
T 2los_A           97 PAGLIAGASLLMVAKVGVSMFN  118 (121)
Confidence            9999999999999544444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00