Citrus Sinensis ID: 042316

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90
Protein Sequence
MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALVSSNNKVREEKAKQSEESMRKVIYLSSWGPY
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccHHHHHHHHHHHHHccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcEEEEEcccccc
Coil and Loop (DISEMBL)
MSSTSRAWMVAASVAAVEVLKDqgfcrwnypirLIHQHAKNSLRSVSQAKKLSTSSSALVSSNNKVREEKAKQSEESMRKVIYLSSWGPY
Flexible Loop (DISEMBL)
MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKlstsssalvssnnkvreekakqseesmrkviylsswgpy
Low Complexity Region (SEG)
MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRsvsqakklstsssalvssNNKVREEKAKQSEESMRKVIYLSSWGPY
Disordered region (IsUnstruct)
******AWMVAASVAAVEVLKDQGFCRWNYPIRLIHQH****************************************************
Disordered Region (DISOPRED)
******A*MVAASVAAVEVLKDQGFCRWNYPIRLI*********************************************VIYLSSWGPY
Disordered Region (DISEMBL)
*********VAASVAAVEVLKDQGFCRWNYPIRLIHQHAK*************************************MRKVIYLSSWGPY
Disordered Region (DISPRO)
*****RAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRS******************************ESMRKVIYLSSWGPY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALVSSNNKVREEKAKQSEESMRKVIYLSSWGPY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
118489034	88	unknown [Populus trichocarpa x Populus d	0.977	1.0	0.7	1e-27
224145559	88	predicted protein [Populus trichocarpa]	0.966	0.988	0.707	1e-27
225447663	88	PREDICTED: uncharacterized protein LOC10	0.966	0.988	0.752	3e-26
225447661	88	PREDICTED: uncharacterized protein LOC10	0.966	0.988	0.752	6e-26
225447651	88	PREDICTED: uncharacterized protein LOC10	0.966	0.988	0.707	9e-26
225447653	88	PREDICTED: uncharacterized protein LOC10	0.966	0.988	0.707	1e-25
225447665	87	PREDICTED: uncharacterized protein LOC10	0.955	0.988	0.685	2e-25
225447667	88	PREDICTED: uncharacterized protein LOC10	0.966	0.988	0.707	2e-25
225447649	88	PREDICTED: uncharacterized protein LOC10	0.966	0.988	0.696	2e-25
225447659	88	PREDICTED: uncharacterized protein LOC10	0.966	0.988	0.730	3e-25

>gi|118489034|gb|ABK96324.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/90 (70%), Positives = 77/90 (85%), Gaps = 2/90 (2%)

Query: 1  MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALV 60
          MSS S+AW+VAA+V  VE LKDQGFCRWNY +R +HQHAKN + S SQAKKLS+SSSA++
Sbjct: 1  MSSASKAWLVAAAVGGVEALKDQGFCRWNYTLRSLHQHAKNHVGSASQAKKLSSSSSAMI 60

Query: 61 SSNNKVREEKAKQSEESMRKVIYLSSWGPY 90
          S  NKV++ +AKQSEES+RKV+YLS WGPY
Sbjct: 61 S--NKVKDVRAKQSEESLRKVMYLSCWGPY 88

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145559|ref|XP_002325686.1| predicted protein [Populus trichocarpa] gi|222862561|gb|EEF00068.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 76/89 (85%), Gaps = 2/89 (2%)

Query: 1  MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALV 60
          MSS S+AW+VAA++  VE LKDQGFCRWNY +R +H HAKN +RS SQAKKLS+SSSA++
Sbjct: 1  MSSASKAWLVAAAIGGVEALKDQGFCRWNYTLRSLHHHAKNHVRSASQAKKLSSSSSAMI 60

Query: 61 SSNNKVREEKAKQSEESMRKVIYLSSWGP 89
          S  N V+EEKAKQSEES+RKV+YLS WGP
Sbjct: 61 S--NIVKEEKAKQSEESLRKVMYLSCWGP 87

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447663|ref|XP_002275464.1| PREDICTED: uncharacterized protein LOC100252779 [Vitis vinifera]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/89 (75%), Positives = 77/89 (86%), Gaps = 2/89 (2%)

Query: 1  MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALV 60
          MS   +AW+VAASV AVE LKDQGFCRWNY +R IHQHAKN+LRS SQAKKLS+SSSA+V
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQAKKLSSSSSAMV 60

Query: 61 SSNNKVREEKAKQSEESMRKVIYLSSWGP 89
          SS  +VR+EKAKQSEES+R V+YLS WGP
Sbjct: 61 SS--RVRDEKAKQSEESLRTVMYLSCWGP 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447661|ref|XP_002275421.1| PREDICTED: uncharacterized protein LOC100257932 [Vitis vinifera]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/89 (75%), Positives = 77/89 (86%), Gaps = 2/89 (2%)

Query: 1  MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALV 60
          MS   +AW+VAASV AVE LKDQGFCRWNY +R IHQHAKN+LRS SQAKKLS+SSSA+V
Sbjct: 1  MSHMRKAWIVAASVGAVEALKDQGFCRWNYTMRSIHQHAKNNLRSFSQAKKLSSSSSAMV 60

Query: 61 SSNNKVREEKAKQSEESMRKVIYLSSWGP 89
          SS  +VR+EKAKQSEES+R V+YLS WGP
Sbjct: 61 SS--RVRDEKAKQSEESLRTVMYLSCWGP 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447651|ref|XP_002274988.1| PREDICTED: uncharacterized protein LOC100256196 [Vitis vinifera]

 Score =  120 bits (301), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 74/89 (83%), Gaps = 2/89 (2%)

Query: 1  MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALV 60
          MS   +AW+VAASV AVE LKDQGFCRWNY +R IHQHAK +LRS +QAKKLS+SSSA  
Sbjct: 1  MSHVGKAWLVAASVGAVEALKDQGFCRWNYTLRSIHQHAKTNLRSFAQAKKLSSSSSA-- 58

Query: 61 SSNNKVREEKAKQSEESMRKVIYLSSWGP 89
            +++VREEKAKQSEES+R V+YLS WGP
Sbjct: 59 MVSSRVREEKAKQSEESLRTVMYLSCWGP 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447653|ref|XP_002275082.1| PREDICTED: uncharacterized protein LOC100251039 [Vitis vinifera] gi|225447655|ref|XP_002275274.1| PREDICTED: uncharacterized protein LOC100245897 [Vitis vinifera]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 74/89 (83%), Gaps = 2/89 (2%)

Query: 1  MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALV 60
          MS   +AW+VAASV AVE LKDQGFCRWNY +R IHQHAK +LRS +QAKKLS+SSSA  
Sbjct: 1  MSHMGKAWLVAASVGAVEALKDQGFCRWNYTLRSIHQHAKTNLRSFAQAKKLSSSSSA-- 58

Query: 61 SSNNKVREEKAKQSEESMRKVIYLSSWGP 89
            +++VREEKAKQSEES+R V+YLS WGP
Sbjct: 59 MVSSRVREEKAKQSEESLRTVMYLSCWGP 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447665|ref|XP_002275507.1| PREDICTED: uncharacterized protein LOC100247673 [Vitis vinifera]

 Score =  120 bits (300), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 73/89 (82%), Gaps = 3/89 (3%)

Query: 1  MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALV 60
          MS   +AW+VAASV AVE LKDQGFCRWNY +R IHQHA+NSLRS SQ KKLS+SS+   
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTMRSIHQHARNSLRSFSQVKKLSSSSA--- 57

Query: 61 SSNNKVREEKAKQSEESMRKVIYLSSWGP 89
            +++VR+EKAKQSEES+R V+YLS WGP
Sbjct: 58 MVSSRVRDEKAKQSEESLRTVMYLSCWGP 86

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447667|ref|XP_002275551.1| PREDICTED: uncharacterized protein LOC100242538 [Vitis vinifera]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 74/89 (83%), Gaps = 2/89 (2%)

Query: 1  MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALV 60
          MS   +AWMVAASV AVE LKDQGFCRWNY +R IHQHAK +LRS S+AKKLS+SSSA  
Sbjct: 1  MSHMGKAWMVAASVGAVEALKDQGFCRWNYTMRSIHQHAKTNLRSFSRAKKLSSSSSA-- 58

Query: 61 SSNNKVREEKAKQSEESMRKVIYLSSWGP 89
            +++VR+EKAKQSEES+R V+YLS WGP
Sbjct: 59 MVSSRVRDEKAKQSEESLRTVMYLSCWGP 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447649|ref|XP_002274919.1| PREDICTED: uncharacterized protein LOC100261290 [Vitis vinifera]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 74/89 (83%), Gaps = 2/89 (2%)

Query: 1  MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALV 60
          MS   +AW+VAASV AVE LKDQGFCRWNY +R IHQHAK +LRS +QAKKLS+SSSA  
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKTNLRSFTQAKKLSSSSSA-- 58

Query: 61 SSNNKVREEKAKQSEESMRKVIYLSSWGP 89
            +++VR+EKAKQSEES+R V+YLS WGP
Sbjct: 59 MVSSRVRDEKAKQSEESLRTVMYLSCWGP 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447659|ref|XP_002275321.1| PREDICTED: uncharacterized protein LOC100263064 [Vitis vinifera]

 Score =  119 bits (297), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 77/89 (86%), Gaps = 2/89 (2%)

Query: 1  MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALV 60
          MS   +AW+VAASV AVE LKDQGFCRWNY +R IHQHAKN+LRS SQA+KLS+SSSA+V
Sbjct: 1  MSHMRKAWVVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQARKLSSSSSAMV 60

Query: 61 SSNNKVREEKAKQSEESMRKVIYLSSWGP 89
          SS  ++R+EKAKQSEES+R V+YLS WGP
Sbjct: 61 SS--RMRDEKAKQSEESLRTVMYLSCWGP 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	90
TAIR|locus:2122799	90	AT4G10270 "AT4G10270" [Arabido	0.977	0.977	0.477	2.8e-18
TAIR|locus:1005716386	83	AT4G10265 "AT4G10265" [Arabido	0.9	0.975	0.477	7.7e-16
TAIR|locus:2134188	95	AT4G33560 "AT4G33560" [Arabido	0.922	0.873	0.349	4.7e-09
TAIR|locus:2053395	196	AT2G14070 "AT2G14070" [Arabido	0.9	0.413	0.311	6.7e-06

TAIR|locus:2122799 AT4G10270 "AT4G10270" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 43/90 (47%), Positives = 57/90 (63%)

Query:     1 MSSTSRAWMVAASVAAVEVLKDQ-GFCRWNYPIRLIHQHAKNSLRXXXXXXXXXXXXXXX 59
             MSSTS+AW VA S+ AVE LKDQ G CRWNY +R ++QH +N++R               
Sbjct:     1 MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query:    60 XXXNNKVREEKAKQSEESMRKVIYLSSWGP 89
                ++    EKAK++EES+R V+YLS WGP
Sbjct:    61 AVTSSG-ESEKAKKAEESLRTVMYLSCWGP 89

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:1005716386 AT4G10265 "AT4G10265" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 43/90 (47%), Positives = 52/90 (57%)

Query:     1 MSSTSRAWMVAASVAAVEVLKDQ-GFCRWNYPIRLIHQHAKNSLRXXXXXXXXXXXXXXX 59
             MSS S+ WMVAAS+ AVE LKDQ G CRWNY IR  +Q+ +N+LR               
Sbjct:     1 MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query:    60 XXXNNKVREEKAKQSEESMRKVIYLSSWGP 89
                       K KQ+EES+R V+YLS WGP
Sbjct:    61 T--------NKTKQAEESLRTVMYLSCWGP 82

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2134188 AT4G33560 "AT4G33560" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 29/83 (34%), Positives = 40/83 (48%)

Query:     7 AWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRXXXXXXXXXXXXXXXXXXNNKV 66
             +W VA ++AAVEVLKDQG  RWNY  RL+H+ A   +R                  + + 
Sbjct:     8 SWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67

Query:    67 REEKAKQSEESMRKVIYLSSWGP 89
             +       E S  K + LS +GP
Sbjct:    68 KPLSTTPFETSFEKAMGLSCFGP 90

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

TAIR|locus:2053395 AT2G14070 "AT2G14070" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 6.7e-06, P = 6.7e-06
 Identities = 28/90 (31%), Positives = 43/90 (47%)

Query:     2 SSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRXXXXXXXXXXXXXXXXX 61
             S+   +WMVA ++AAVE        RWNYP+R  ++  +  LR                 
Sbjct:   109 STRHTSWMVATAIAAVET-------RWNYPLRFFNKDVRARLRAIAVTSRPPSSASSSSS 161

Query:    62 XN-NKVREEKAK-QSEESMRKVIYLSSWGP 89
              + + V+E     +SE SM +V+ LS +GP
Sbjct:   162 SSADLVKENHPMPKSEASMERVMCLSCFGP 191


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.125   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       90        72   0.00091  102 3  11 22  0.48    28
                                                     29  0.43    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  108 KB (2073 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.81u 0.11s 7.92t   Elapsed:  00:00:01
  Total cpu time:  7.81u 0.11s 7.92t   Elapsed:  00:00:01
  Start:  Tue May 21 00:19:36 2013   End:  Tue May 21 00:19:37 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	90
PLN00165	88	PLN00165, PLN00165, hypothetical protein; Provisio	1e-35
pfam12609	78	pfam12609, DUF3774, Wound-induced protein	8e-25

>gnl|CDD|165732 PLN00165, PLN00165, hypothetical protein; Provisional

 Score =  115 bits (289), Expect = 1e-35
 Identities = 68/89 (76%), Positives = 77/89 (86%), Gaps = 2/89 (2%)

Query: 1  MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALV 60
          MS   +AW+VAASV AVE LKDQGFCRWNY +R IHQHAKN+LRS SQAKKLS+SSSA+V
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQAKKLSSSSSAMV 60

Query: 61 SSNNKVREEKAKQSEESMRKVIYLSSWGP 89
          SS  +VREEKAKQSEES+R V+YLS WGP
Sbjct: 61 SS--RVREEKAKQSEESLRTVMYLSCWGP 87

Length = 88

>gnl|CDD|221661 pfam12609, DUF3774, Wound-induced protein

 Score = 87.9 bits (218), Expect = 8e-25
 Identities = 50/81 (61%), Positives = 59/81 (72%), Gaps = 4/81 (4%)

Query: 10 VAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSL-RSVSQAKKLSTSSSALVSSNNKVRE 68
          VAASV AVE LKDQG CRWNY +R +HQ AK +  RS SQA K S+SSS   S++    E
Sbjct: 1  VAASVGAVEALKDQGLCRWNYALRSLHQAAKANARRSASQAGKSSSSSS---SASAAAAE 57

Query: 69 EKAKQSEESMRKVIYLSSWGP 89
           KAKQ+EES+R V+YLS WGP
Sbjct: 58 VKAKQAEESLRTVMYLSCWGP 78

This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	90
PLN00165	88	hypothetical protein; Provisional	100.0
PF12609	79	DUF3774: Wound-induced protein; InterPro: IPR02225	100.0

>PLN00165 hypothetical protein; Provisional

Probab=100.00  E-value=3.5e-53  Score=283.67  Aligned_cols=88  Identities=76%  Similarity=1.146  Sum_probs=79.8

Q ss_pred             CCcchhHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhhhhhhhhhcccCCchhhhhhccchhhhhhhhhhhhhhcc
Q 042316            1 MSSTSRAWMVAASVAAVEVLKDQGFCRWNYPIRLIHQHAKNSLRSVSQAKKLSTSSSALVSSNNKVREEKAKQSEESMRK   80 (90)
Q Consensus         1 Ms~~~~~w~vAaSvgaVealKDQG~Crwn~alrSl~~~ak~~~~s~sqa~~ls~sssa~~~~~~~~~~~k~kqaEESLR~   80 (90)
                      |||++|+||||+||||||+|||||+|||||+|||||||++++++|++|+++|++++++..+  ...+++|.||+||||||
T Consensus         1 Ms~~~r~w~vAaSvgaVEalkDQG~cRwny~lrS~~~~a~~~~~s~s~~~~lss~~~~~~s--~~~~~~k~kq~EEsLRt   78 (88)
T PLN00165          1 MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQAKKLSSSSSAMVS--SRVREEKAKQSEESLRT   78 (88)
T ss_pred             CccchhHHHHHHHHHHHhhccccCeeehhhHHHHHHHHHHhccccccccccCCCcchhhhh--hhhccccccchHHhhhe
Confidence            9999999999999999999999999999999999999999999999999999876543322  34566888999999999


Q ss_pred             eeeeecccCC
Q 042316           81 VIYLSSWGPY   90 (90)
Q Consensus        81 VMyLSCWGPn   90 (90)
                      ||||||||||
T Consensus        79 VMyLSCWGPN   88 (88)
T PLN00165         79 VMYLSCWGPN   88 (88)
T ss_pred             eeEecccCCC
Confidence            9999999998

>PF12609 DUF3774: Wound-induced protein; InterPro: IPR022251 This family of proteins is found in eukaryotes

Probab=100.00  E-value=5.5e-42  Score=224.58  Aligned_cols=77  Identities=66%  Similarity=1.004  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHhccc-cccccchhHHHHHHHHHhhh-hhhhhhcccCCchhhhhhccchhhhhhhhhhhhhhcceeeeecc
Q 042316           10 VAASVAAVEVLKDQ-GFCRWNYPIRLIHQHAKNSL-RSVSQAKKLSTSSSALVSSNNKVREEKAKQSEESMRKVIYLSSW   87 (90)
Q Consensus        10 vAaSvgaVealKDQ-G~Crwn~alrSl~~~ak~~~-~s~sqa~~ls~sssa~~~~~~~~~~~k~kqaEESLR~VMyLSCW   87 (90)
                      ||+||||||+|||| |+|||||+|||+|+++++++ ++.+|++++++++++. .  ....+++.||+|||||||||||||
T Consensus         1 vAasvgavealKDq~g~crwn~alrs~~~~a~~~~~~s~~~~~~~~ss~~~~-~--~~~~~~~~k~aEEsLRtVMyLSCW   77 (79)
T PF12609_consen    1 VAASVGAVEALKDQAGLCRWNYALRSLHQHAKANVRGSASQAKRLSSSSSSS-S--AAAEEEKRKQAEESLRTVMYLSCW   77 (79)
T ss_pred             CchhHHHHhccccccccccccHHHHHHHHHhhhccccccccccccCcccccc-c--ccccccccchhhhhhceeEEEecc
Confidence            68999999999999 99999999999999999999 8899999987765421 1  245678999999999999999999


Q ss_pred             cC
Q 042316           88 GP   89 (90)
Q Consensus        88 GP   89 (90)
                      ||
T Consensus        78 GP   79 (79)
T PF12609_consen   78 GP   79 (79)
T ss_pred             Cc
Confidence            99

Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00