Citrus Sinensis ID: 042406
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 424 | 2.2.26 [Sep-21-2011] | |||||||
| O81312 | 430 | UDP-glucuronate 4-epimera | yes | no | 0.983 | 0.969 | 0.706 | 1e-178 | |
| Q9LPC1 | 434 | UDP-glucuronate 4-epimera | no | no | 0.969 | 0.947 | 0.699 | 1e-175 | |
| Q9STI6 | 436 | UDP-glucuronate 4-epimera | no | no | 0.974 | 0.947 | 0.719 | 1e-170 | |
| O22141 | 437 | UDP-glucuronate 4-epimera | no | no | 0.988 | 0.958 | 0.664 | 1e-168 | |
| Q9LIS3 | 460 | UDP-glucuronate 4-epimera | no | no | 0.830 | 0.765 | 0.696 | 1e-152 | |
| Q9M0B6 | 429 | UDP-glucuronate 4-epimera | no | no | 0.948 | 0.937 | 0.662 | 1e-148 | |
| Q04871 | 334 | Uncharacterized 37.6 kDa | N/A | no | 0.771 | 0.979 | 0.439 | 3e-76 | |
| Q58455 | 326 | Uncharacterized protein M | yes | no | 0.733 | 0.953 | 0.442 | 9e-73 | |
| P39858 | 334 | Protein CapI OS=Staphyloc | yes | no | 0.771 | 0.979 | 0.424 | 3e-71 | |
| O54067 | 341 | UDP-glucuronate 5'-epimer | yes | no | 0.778 | 0.967 | 0.397 | 5e-67 |
| >sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 625 bits (1611), Expect = e-178, Method: Compositional matrix adjust.
Identities = 303/429 (70%), Positives = 352/429 (82%), Gaps = 12/429 (2%)
Query: 1 MLHLDRTPSTAGNKLKPEKFHNHRLRS---KLAVWSFLFLTVFLFFFLISPSPS------ 51
M HLD PST G K KP FH R +S KLA WS +F+ + FF SP S
Sbjct: 4 MSHLDDIPSTPG-KFKPY-FHRTRWQSSVAKLAFWSLVFVGLIFIFFYRSPVSSNPADPS 61
Query: 52 -ATFRRHSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLD 110
+ R +S GGP WEK++ S R R+ RG +VLVTGAAGFVG+HVS ALK+RGDGVLGLD
Sbjct: 62 RRSLRTYSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLD 121
Query: 111 NFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYA 170
NFN+YY+ SLK+AR+ LLER+GVFV++ DIND +LL K+F VV FTHVMHLAAQAGVRYA
Sbjct: 122 NFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYA 181
Query: 171 MQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL 230
M+NP+SYV SNIAGFVNLLE CKS++PQPAIVWASSSSVYG+N KVPFSEKDRTDQPASL
Sbjct: 182 MENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 241
Query: 231 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEA 290
YAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFTRDI++GK I+++E
Sbjct: 242 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEG 301
Query: 291 PDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLV 350
+ +VARDFTYIDDIVKGCL LDTA+KSTGSGGKK+G A+ R+FNLGNT+PVPV+ LV
Sbjct: 302 VNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLV 361
Query: 351 SLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410
++LE++LKVKA+ ++ LPRNGDVQFTHANIS AQRELGY PTTDL+TGLKKF RWYL Y
Sbjct: 362 TILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYLGY 421
Query: 411 YNSASASPS 419
YN + S
Sbjct: 422 YNGGKKAAS 430
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 6 |
| >sp|Q9LPC1|GAE2_ARATH UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 615 bits (1585), Expect = e-175, Method: Compositional matrix adjust.
Identities = 296/423 (69%), Positives = 345/423 (81%), Gaps = 12/423 (2%)
Query: 1 MLHLDRTPSTAGN--KLKPEKFHNHRLR-----SKLAVWSFLFLTVFLFFFLISP----- 48
M HLD PST G + F HR R +KLA WS +F + FF SP
Sbjct: 1 MSHLDDIPSTPGKFKMMDKSPFFLHRTRWQSSVAKLAFWSLVFFGLLFIFFYRSPISNPD 60
Query: 49 SPSATFRRHSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLG 108
S + R +S GGP WEK++ S R R+ G++VLVTGAAGFVG+HVS ALK+RGDGVLG
Sbjct: 61 SSRRSLRTYSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLG 120
Query: 109 LDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVR 168
LDNFN+YY+TSLK++R+ LLER+GVF+++ DIND SLL K+F VV FTHVMHLAAQAGVR
Sbjct: 121 LDNFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVR 180
Query: 169 YAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPA 228
YAM+NP SYV SNIAGFVNLLE CKS++PQPAIVWASSSSVYG+N KVPFSEKDRTDQPA
Sbjct: 181 YAMENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPA 240
Query: 229 SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVY 288
SLYAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFTRDI++GK I+++
Sbjct: 241 SLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIF 300
Query: 289 EAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSR 348
E + +VARDFTYIDDIVKGCL LDTA+KSTGSGGKK+G A+ R+FNLGNT+PVPV+
Sbjct: 301 EGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTD 360
Query: 349 LVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYL 408
LVS+LE++LKVKA+ ++ LPRNGDV FTHANIS AQRE GY P+TDL+TGLKKFVRWYL
Sbjct: 361 LVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYL 420
Query: 409 SYY 411
YY
Sbjct: 421 GYY 423
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q9STI6|GAE5_ARATH UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 598 bits (1542), Expect = e-170, Method: Compositional matrix adjust.
Identities = 310/431 (71%), Positives = 361/431 (83%), Gaps = 18/431 (4%)
Query: 1 MLHLDRTPSTAGNKLKPEK------FHNHR-LR-SKLAVWSFLFLTVFLFFFLISPSPSA 52
M HLD PST G K K +K H+HR LR SKL +W+ LFL +FLF+ ++SP PS
Sbjct: 1 MSHLDDLPSTPG-KYKTDKVPPYGILHHHRYLRLSKLTLWASLFLALFLFYLVLSPPPSP 59
Query: 53 TFRRHSS---------GGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRG 103
+ R + GG WEKQ+ KS RPRS GLTVLVTGA+GFVG+HVS+AL++RG
Sbjct: 60 SRRNLNDSSSISAAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRG 119
Query: 104 DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAA 163
DGVLGLDNFN YY+ LK+AR+GLLER+GVFV++ DIND LL K+F+VV FTHVMHLAA
Sbjct: 120 DGVLGLDNFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAA 179
Query: 164 QAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223
QAGVRYAMQNP SYV SNIAGFVNLLE KS++PQPAIVWASSSSVYG+N KVPFSEKDR
Sbjct: 180 QAGVRYAMQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDR 239
Query: 224 TDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGK 283
TDQPASLYAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFT+DI++GK
Sbjct: 240 TDQPASLYAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGK 299
Query: 284 RITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343
ITV+E+PD SVARDFTYIDDIVKGCL LDTA+KSTGSGGKKKGPA FRI+NLGNT+P
Sbjct: 300 TITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSP 359
Query: 344 VPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKF 403
VPV++LV++LEK+LK+KA+ K++PLPRNGDV+FTHANI+LAQ ELGY P DLETGLKKF
Sbjct: 360 VPVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKF 419
Query: 404 VRWYLSYYNSA 414
V+WY+ +Y +
Sbjct: 420 VKWYMGFYTGS 430
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|O22141|GAE4_ARATH UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 591 bits (1524), Expect = e-168, Method: Compositional matrix adjust.
Identities = 291/438 (66%), Positives = 351/438 (80%), Gaps = 19/438 (4%)
Query: 1 MLHLDRTPSTAGNKLKPEKF-HNHRLRSKLAVWSFLFLTVFLFFFLISPSPSAT------ 53
M LD PS+ G K K EK + HRLR + ++ F F + FL + +
Sbjct: 1 MSRLDDIPSSPG-KFKMEKSSYLHRLRFQSSLTKFAFFSFFLLCLISLLFLRSPPSINPS 59
Query: 54 ---------FRRHSSGGPQWEKQIVKSTRPRST--RGLTVLVTGAAGFVGSHVSLALKKR 102
R ++ GGP WEK++ S R R++ G+TVLVTGAAGFVG+HVS ALK+R
Sbjct: 60 SPSDPSRRSLRTNTYGGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRR 119
Query: 103 GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLA 162
GDGV+GLDNFN+YY+ SLK+AR+ LLER+G+F+++ DIND LL K+F +V+FTHVMHLA
Sbjct: 120 GDGVIGLDNFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLA 179
Query: 163 AQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222
AQAGVRYAM+NP+SYV SNIAGFVNLLE CKS +PQPAIVWASSSSVYG+N KVPFSEKD
Sbjct: 180 AQAGVRYAMENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKD 239
Query: 223 RTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRG 282
+TDQPASLYAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFT+DI++G
Sbjct: 240 KTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKG 299
Query: 283 KRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342
K I+++E+ + +VARDFTYIDDIVKGCLA LDTA+KSTGSGGKK+GPA+ R+FNLGNT+
Sbjct: 300 KSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTS 359
Query: 343 PVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKK 402
PVPVS LV +LE+ LKVKA+ ++ +PRNGDV FTHANISLAQRELGY PTTDL+TGLKK
Sbjct: 360 PVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKK 419
Query: 403 FVRWYLSYYNSASASPSR 420
FVRWYLSYY+ + +R
Sbjct: 420 FVRWYLSYYSGDKKAAAR 437
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q9LIS3|GAE6_ARATH UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 538 bits (1385), Expect = e-152, Method: Compositional matrix adjust.
Identities = 245/352 (69%), Positives = 297/352 (84%)
Query: 60 GGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETS 119
GG WEK++ +S+ + GL+VLVTGAAGFVGSH SLAL+KRGDGVLG DNFN+YY+ S
Sbjct: 92 GGAAWEKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPS 151
Query: 120 LKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVE 179
LK+AR+ LLE+ VF+++ D+ND LL K+F+VV FTH++HLAAQAGVRYAM+NP SY+
Sbjct: 152 LKRARQELLEKQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIA 211
Query: 180 SNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239
SNIAGFVNLLE K+++PQPAIVWASSSSVYG+N + PFSE+ RTDQPASLYAATKKAGE
Sbjct: 212 SNIAGFVNLLEVAKAANPQPAIVWASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAGE 271
Query: 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299
IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFT+DI+ GK I +Y D VARD
Sbjct: 272 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARD 331
Query: 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKV 359
FTYIDDIVKGC+ LDTA+KSTGSGGKK+G A+ R++NLGNT+PVPV RLVS+LE +L
Sbjct: 332 FTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGT 391
Query: 360 KAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
KA+ ++ +PRNGDV +THAN+SLA ++ GY PTTDL GL+KFV+WY+ YY
Sbjct: 392 KAKKHLIKMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYY 443
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q9M0B6|GAE1_ARATH UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 526 bits (1355), Expect = e-148, Method: Compositional matrix adjust.
Identities = 273/412 (66%), Positives = 320/412 (77%), Gaps = 10/412 (2%)
Query: 8 PSTAGNKLKPEKFHNHRLRSKLAVWSFLFLTVFLFFFLISPSPS--------ATFRRHSS 59
PST G K K ++ N +L A S +FL L + S + + S
Sbjct: 10 PSTPG-KFKIDR-SNRQLHRCFASTSTMFLWALFLIALTASYLSFQSFVDSGSRYLTASW 67
Query: 60 GGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETS 119
GG QWEKQ+ S + + G++VLVTGA GFVGSHVSLAL+KRGDGV+GLDNFNNYY+ S
Sbjct: 68 GGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPS 127
Query: 120 LKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVE 179
LK+AR+ LL G+FV++ D+ND LL K+F+VVAFTHVMHLAAQAGVRYA++NP SYV
Sbjct: 128 LKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVH 187
Query: 180 SNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239
SNIAG VNLLE CK+++PQPAIVWASSSSVYG+N+KVPFSE DRTDQPASLYAATKKAGE
Sbjct: 188 SNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASLYAATKKAGE 247
Query: 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299
I H YNHIYGL+ITGLRFFTVYGPWGRPDMAYF FTR+I++GK IT+Y + +ARD
Sbjct: 248 EITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRGKNRVDLARD 307
Query: 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKV 359
FTYIDDIVKGCL LD++ KSTGSGGKK+G A +RIFNLGNT+PV V LV +LEK LKV
Sbjct: 308 FTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILVDILEKHLKV 367
Query: 360 KAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
KA+ + +P NGDV FTHANIS A+ E GY PTTDLETGLKKFVRWYLSYY
Sbjct: 368 KAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLSYY 419
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q04871|YCL2_ECO11 Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 148/337 (43%), Positives = 212/337 (62%), Gaps = 10/337 (2%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+ LVTGAAGF+G HVS L + G V+G+DN N+YY+ SLK+AR LL + G D
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ D+ + +F F V + VRY+++NP++Y +SN+ GF+N+LE C+ + Q
Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRHNKIQ- 119
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
+++ASSSSVYG+N+K+PFS D D P SLYAATKKA E +AH Y+H+YGL TGLRFF
Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179
Query: 260 TVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT--- 316
TVYGPWGRPDMA F FT+ ++ GK I VY + + RDFTYIDDI + + D
Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVY---NYGKMKRDFTYIDDIAEAIIRLQDVIPH 236
Query: 317 --AKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDV 374
+ + +G A +R++N+GN++PV + + LE L ++A+ +LPL + GDV
Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPL-QPGDV 295
Query: 375 QFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
T A+ +G+ P T ++ G+K FV WY +Y
Sbjct: 296 LETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFY 332
|
Escherichia coli O111:H- (taxid: 168927) |
| >sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1055 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 147/332 (44%), Positives = 211/332 (63%), Gaps = 21/332 (6%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDG--VLGLDNFNNYYETSLKKARKGLLERAGVFV-ID 137
+LVTG+AGF+G H+S L + V+G+DN NNYY LK+ R +L+ + I
Sbjct: 5 NILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIK 64
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
D +D L + ++HL AQAGVRY++QNP +Y++SN G +N+ E + D
Sbjct: 65 LDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDI 124
Query: 198 QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLR 257
+ +V+ASSSSVYG N+K+PFSE DR D+P SLYA+TK++ E +AH Y+H+YG+ + GLR
Sbjct: 125 EK-VVYASSSSVYGGNRKIPFSEDDRVDKPISLYASTKRSNELMAHVYHHLYGIKMIGLR 183
Query: 258 FFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317
FFTVYG +GRPDMAYF F ++I+ GK I VY ++ RDFTYI D+V G L +
Sbjct: 184 FFTVYGEYGRPDMAYFKFAKNILLGKEIEVYNY---GNMERDFTYISDVVDGILRAI--- 237
Query: 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFT 377
K ++ IFNLGN+ PV + + L+EK L KA+ K LP+ ++GDV T
Sbjct: 238 ----------KKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPM-QDGDVLRT 286
Query: 378 HANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
+A++S +++ LGY P +E GLK+F W+L
Sbjct: 287 YADLSKSEKLLGYKPKVTIEEGLKRFCNWFLE 318
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) |
| >sp|P39858|CAPI_STAAU Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (687), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 207/337 (61%), Gaps = 10/337 (2%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+ +L+TG AGF+GSH++ L K+G V+G+D+ N+YY SLK+ R + +
Sbjct: 1 MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK 60
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ + L K+F V++LAAQAGVRY+++NP +Y++SNI GF+N+LE + + Q
Sbjct: 61 LENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ- 119
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
+++ASSSSVYG N PFS D D P SLYAATKK+ E +AH Y+H+Y L TGLRFF
Sbjct: 120 NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFF 179
Query: 260 TVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC--LAGLDTA 317
TVYGPWGRPDMA F FT+ I+ + I VY + ++ RDFTY+DDIV+ L +
Sbjct: 180 TVYGPWGRPDMALFKFTKAIVNDQAIDVY---NHGNMMRDFTYVDDIVEAISRLVKKPAS 236
Query: 318 KKSTGSGGKKK---GPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDV 374
SG A ++++N+GN +PV + V +E L +A + L + GDV
Sbjct: 237 PNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDL-QPGDV 295
Query: 375 QFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
T+AN+ R++ + P T ++ G+ KFV WYL YY
Sbjct: 296 PETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY 332
|
Required for the biosynthesis of type 1 capsular polysaccharide. Staphylococcus aureus (taxid: 1280) EC: 4 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|O54067|LPSL_RHIME UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti (strain 1021) GN=lspL PE=3 SV=2 | Back alignment and function description |
|---|
Score = 255 bits (651), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 136/342 (39%), Positives = 201/342 (58%), Gaps = 12/342 (3%)
Query: 83 LVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVF-VIDADIN 141
L+TG AGF+G HV+ L G V+G D YY+ +LK+ R +L+R+ F + A +
Sbjct: 4 LITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTAMLE 63
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D++ LD+ + ++HLAAQAGVRY+++NP +YV++N+ G N+LE K+ P+ +
Sbjct: 64 DRAALDRAAELAEPEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK-HL 122
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
+ AS+SS+YG N+K+PF+E DR D+P +LYAATKK+ E +AH+Y H+Y + T RFFTV
Sbjct: 123 MLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRFFTV 182
Query: 262 YGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKST 321
YGPWGRPDMA F F I G+ I +Y ++RDFTYIDD+V+ +
Sbjct: 183 YGPWGRPDMALFKFVDAIHNGRPIDIY---GEGRMSRDFTYIDDLVESIVRLSHVPPSEE 239
Query: 322 GSGGKKKGP------AEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQ 375
+K A FR+ N G PV + V +EK + A +LP+ + GDV
Sbjct: 240 NRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPM-QQGDVP 298
Query: 376 FTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSASAS 417
T A+ L + G+ P+ +E G+ +FV WY Y A +
Sbjct: 299 RTFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNYRRAHTT 340
|
Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 424 | ||||||
| 147771058 | 435 | hypothetical protein VITISV_008097 [Viti | 0.959 | 0.935 | 0.749 | 1e-179 | |
| 359497620 | 431 | PREDICTED: UDP-glucuronate 4-epimerase 3 | 0.957 | 0.941 | 0.746 | 1e-177 | |
| 15236712 | 430 | UDP-D-glucuronate 4-epimerase 3 [Arabido | 0.983 | 0.969 | 0.706 | 1e-176 | |
| 356496364 | 438 | PREDICTED: UDP-glucuronate 4-epimerase 3 | 0.971 | 0.940 | 0.703 | 1e-176 | |
| 449432263 | 438 | PREDICTED: UDP-glucuronate 4-epimerase 3 | 0.976 | 0.945 | 0.711 | 1e-176 | |
| 297810175 | 429 | UDP-D-glucuronate 4-epimerase 2 [Arabido | 0.983 | 0.972 | 0.703 | 1e-175 | |
| 449480059 | 432 | PREDICTED: UDP-glucuronate 4-epimerase 3 | 0.976 | 0.958 | 0.711 | 1e-175 | |
| 359489543 | 512 | PREDICTED: UDP-glucuronate 4-epimerase 3 | 0.983 | 0.814 | 0.703 | 1e-175 | |
| 225454018 | 433 | PREDICTED: UDP-glucuronate 4-epimerase 3 | 0.976 | 0.956 | 0.696 | 1e-175 | |
| 356506372 | 438 | PREDICTED: UDP-glucuronate 4-epimerase 3 | 0.971 | 0.940 | 0.698 | 1e-174 |
| >gi|147771058|emb|CAN60968.1| hypothetical protein VITISV_008097 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 317/423 (74%), Positives = 358/423 (84%), Gaps = 16/423 (3%)
Query: 3 HLDRTPSTAGNKLKPEKFHN-HRLRS-----KLAVWSFLFLTVFLFFFLISP-----SPS 51
H+D PST G K K +K+H HR RS KL +WS F +V FFFL+SP SP+
Sbjct: 4 HMDNIPSTPG-KFKSDKYHYIHRFRSHSSLAKLILWSLFFFSVICFFFLLSPTSPTSSPA 62
Query: 52 ATFRR----HSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVL 107
RR ++ GGP+WEK++ +S R RS G TVLVTG AGFVGSHVS ALK+RGDGV+
Sbjct: 63 DRSRRVLANYTWGGPEWEKKVRQSARVRSDHGHTVLVTGGAGFVGSHVSAALKRRGDGVI 122
Query: 108 GLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGV 167
GLDNFNNYY+ LK+ R+ LLERAGVFV++ DIND LL K+F+VVAFTHVMHLAAQAGV
Sbjct: 123 GLDNFNNYYDPELKRHRRDLLERAGVFVVEGDINDSELLRKLFDVVAFTHVMHLAAQAGV 182
Query: 168 RYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227
RYAMQNP SYV SNIAG VNLLE CKS+DPQPAIVWASSSSVYG+N KVPFSEKDRTD+P
Sbjct: 183 RYAMQNPKSYVNSNIAGLVNLLEVCKSADPQPAIVWASSSSVYGLNSKVPFSEKDRTDRP 242
Query: 228 ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITV 287
ASLYAATKKAGEAIAH YNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDI+ GK IT+
Sbjct: 243 ASLYAATKKAGEAIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDILTGKPITI 302
Query: 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVS 347
+E PD SVARDFTYIDDIVKGCLA LDTAKKSTG+GGKKKG A+FRIFNLGNT+PV VS
Sbjct: 303 FEGPDHGSVARDFTYIDDIVKGCLASLDTAKKSTGTGGKKKGAAQFRIFNLGNTSPVDVS 362
Query: 348 RLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
+LVS+LEK+LKVKA+ +VLP+PRNGDVQ+THANISLAQRELGY PTTDLE+GLKKFVRWY
Sbjct: 363 KLVSILEKLLKVKAKRRVLPMPRNGDVQYTHANISLAQRELGYKPTTDLESGLKKFVRWY 422
Query: 408 LSY 410
++Y
Sbjct: 423 ITY 425
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497620|ref|XP_003635586.1| PREDICTED: UDP-glucuronate 4-epimerase 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 315/422 (74%), Positives = 357/422 (84%), Gaps = 16/422 (3%)
Query: 4 LDRTPSTAGNKLKPEKFHN-HRLRS-----KLAVWSFLFLTVFLFFFLISPS-----PSA 52
+D PST G K K +K+H HR RS KL +WS F +V FFFL+SP+ P+
Sbjct: 1 MDNIPSTPG-KFKSDKYHYIHRFRSHSSLAKLILWSLFFFSVICFFFLLSPTSPTSPPAD 59
Query: 53 TFRR----HSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLG 108
RR ++ GGP+WEK++ +S R RS G TVLVTG AGFVGSHVS ALK+RGDGV+G
Sbjct: 60 RSRRVLANYTWGGPEWEKKVRQSARVRSDHGHTVLVTGGAGFVGSHVSAALKRRGDGVIG 119
Query: 109 LDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVR 168
LDNFNNYY+ LK+ R+ LLERAGVFV++ DIND LL K+F+VVAFTHVMHLAAQAGVR
Sbjct: 120 LDNFNNYYDPELKRHRRDLLERAGVFVVEGDINDSELLRKLFDVVAFTHVMHLAAQAGVR 179
Query: 169 YAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPA 228
YAMQNP SYV SNIAG VNLLE CKS+DPQPAIVWASSSSVYG+N KVPFSEKDRTD+PA
Sbjct: 180 YAMQNPKSYVNSNIAGLVNLLEVCKSADPQPAIVWASSSSVYGLNSKVPFSEKDRTDRPA 239
Query: 229 SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVY 288
SLYAATKKAGEAIAH YNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDI+ GK IT++
Sbjct: 240 SLYAATKKAGEAIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDILTGKPITIF 299
Query: 289 EAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSR 348
E PD SVARDFTYIDDIVKGCLA LDTAKKSTG+GGKKKG A+FRIFNLGNT+PV VS+
Sbjct: 300 EGPDHGSVARDFTYIDDIVKGCLASLDTAKKSTGTGGKKKGAAQFRIFNLGNTSPVDVSK 359
Query: 349 LVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYL 408
LVS+LEK+LKVKA+ +VLP+PRNGDVQ+THANISLAQRELGY PTTDLE+GLKKFVRWY+
Sbjct: 360 LVSILEKLLKVKAKRRVLPMPRNGDVQYTHANISLAQRELGYKPTTDLESGLKKFVRWYI 419
Query: 409 SY 410
+Y
Sbjct: 420 TY 421
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236712|ref|NP_191922.1| UDP-D-glucuronate 4-epimerase 3 [Arabidopsis thaliana] gi|75100157|sp|O81312.1|GAE3_ARATH RecName: Full=UDP-glucuronate 4-epimerase 3; AltName: Full=UDP-glucuronic acid epimerase 3 gi|3193316|gb|AAC19298.1| contains similarity to nucleotide sugar epimerases [Arabidopsis thaliana] gi|7267098|emb|CAB80769.1| putative nucleotide sugar epimerase [Arabidopsis thaliana] gi|111074442|gb|ABH04594.1| At4g00110 [Arabidopsis thaliana] gi|332656424|gb|AEE81824.1| UDP-D-glucuronate 4-epimerase 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 303/429 (70%), Positives = 352/429 (82%), Gaps = 12/429 (2%)
Query: 1 MLHLDRTPSTAGNKLKPEKFHNHRLRS---KLAVWSFLFLTVFLFFFLISPSPS------ 51
M HLD PST G K KP FH R +S KLA WS +F+ + FF SP S
Sbjct: 4 MSHLDDIPSTPG-KFKPY-FHRTRWQSSVAKLAFWSLVFVGLIFIFFYRSPVSSNPADPS 61
Query: 52 -ATFRRHSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLD 110
+ R +S GGP WEK++ S R R+ RG +VLVTGAAGFVG+HVS ALK+RGDGVLGLD
Sbjct: 62 RRSLRTYSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLD 121
Query: 111 NFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYA 170
NFN+YY+ SLK+AR+ LLER+GVFV++ DIND +LL K+F VV FTHVMHLAAQAGVRYA
Sbjct: 122 NFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYA 181
Query: 171 MQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL 230
M+NP+SYV SNIAGFVNLLE CKS++PQPAIVWASSSSVYG+N KVPFSEKDRTDQPASL
Sbjct: 182 MENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 241
Query: 231 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEA 290
YAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFTRDI++GK I+++E
Sbjct: 242 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEG 301
Query: 291 PDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLV 350
+ +VARDFTYIDDIVKGCL LDTA+KSTGSGGKK+G A+ R+FNLGNT+PVPV+ LV
Sbjct: 302 VNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLV 361
Query: 351 SLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410
++LE++LKVKA+ ++ LPRNGDVQFTHANIS AQRELGY PTTDL+TGLKKF RWYL Y
Sbjct: 362 TILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYLGY 421
Query: 411 YNSASASPS 419
YN + S
Sbjct: 422 YNGGKKAAS 430
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356496364|ref|XP_003517038.1| PREDICTED: UDP-glucuronate 4-epimerase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1608), Expect = e-176, Method: Compositional matrix adjust.
Identities = 299/425 (70%), Positives = 353/425 (83%), Gaps = 13/425 (3%)
Query: 1 MLHLDRTPSTAGN-KLKPEKFHN----HRLRSKLAVWSFLFLTVFLFFFLISPSPSA--- 52
M H+D PST G K++ + N H +KLAVWSF+FL L FFL SP+ S
Sbjct: 7 MSHIDSAPSTPGKFKMEKASYFNRVRWHTSLAKLAVWSFVFLGAILIFFLRSPASSPVPA 66
Query: 53 -----TFRRHSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVL 107
+ R ++ GGP WEK++ S + RS G VLVTGAAGFVG+HVS ALK+RGDGVL
Sbjct: 67 DLSRRSLRTYNWGGPVWEKRVRASAQIRSRNGFAVLVTGAAGFVGTHVSAALKRRGDGVL 126
Query: 108 GLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGV 167
GLDNFN+YY+ SLK+AR+GLLER+GV++++ DIND++LL K+F VV FTHVMHLAAQAGV
Sbjct: 127 GLDNFNDYYDPSLKRARQGLLERSGVYIVEGDINDEALLRKLFEVVPFTHVMHLAAQAGV 186
Query: 168 RYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227
RYAM+NP SYV SNIAGFVNLLE CKS +PQPAIVWASSSSVYG+N KVPFSE+DRTDQP
Sbjct: 187 RYAMENPGSYVHSNIAGFVNLLEVCKSVNPQPAIVWASSSSVYGLNTKVPFSERDRTDQP 246
Query: 228 ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITV 287
ASLYAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFTRD+++GK I +
Sbjct: 247 ASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDLLKGKSIPI 306
Query: 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVS 347
+EA + +VARDFTYIDDIV+GCL LDTA+KSTGSGGKK+GPA+ RIFNLGNT+PVPVS
Sbjct: 307 FEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRGPAQLRIFNLGNTSPVPVS 366
Query: 348 RLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
LVS+LE++LKVKA+ ++ LPRNGDVQFTHANIS AQ ELGY PTTDL++GLKKFVRWY
Sbjct: 367 DLVSILERLLKVKAKRNIMKLPRNGDVQFTHANISYAQMELGYKPTTDLQSGLKKFVRWY 426
Query: 408 LSYYN 412
L+YY+
Sbjct: 427 LNYYS 431
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432263|ref|XP_004133919.1| PREDICTED: UDP-glucuronate 4-epimerase 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust.
Identities = 304/427 (71%), Positives = 349/427 (81%), Gaps = 13/427 (3%)
Query: 1 MLHLDRTPSTAGNKLKPEKFHNHRLR-----SKLAVWSFLFLTVFLFFFLISPSPSATFR 55
M HLD PST G + + HRLR +KL WS + L L FF SPS S
Sbjct: 7 MSHLDNIPSTPGKFKMDKSPYIHRLRWHSSLTKLTFWSLVILGSILIFFFRSPSSSPLPS 66
Query: 56 RHSS--------GGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVL 107
HS GGP WEK++ S R RS G++VLVTGAAGFVG+HVS+ALK+RGDGVL
Sbjct: 67 DHSRRSLSTYDWGGPAWEKRVRSSARVRSRNGISVLVTGAAGFVGTHVSVALKRRGDGVL 126
Query: 108 GLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGV 167
GLDNFNNYY+ SLK+AR+ LLER GVFV++ DIND +LL K+F VV FTHVMHLAAQAGV
Sbjct: 127 GLDNFNNYYDQSLKRARQALLERTGVFVVEGDINDSALLKKLFEVVPFTHVMHLAAQAGV 186
Query: 168 RYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227
RYAM+NP+SYV SNIAG V+LLE CKS++PQP+IVWASSSSVYG+N KVPFSEKDRTDQP
Sbjct: 187 RYAMENPSSYVHSNIAGLVSLLEVCKSANPQPSIVWASSSSVYGLNTKVPFSEKDRTDQP 246
Query: 228 ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITV 287
ASLYAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFTRDI++GK I +
Sbjct: 247 ASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKSIPI 306
Query: 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVS 347
+E D +VARDFTYIDDIVKGCLA LDTA+KSTGSGGKKKGPA+ R+FNLGNT+PVPVS
Sbjct: 307 FEGADHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKKGPAQLRVFNLGNTSPVPVS 366
Query: 348 RLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
LVS+LEK+LK+KA+ ++ LPRNGDVQFTHANISLAQRELGY PTTDL+TGLKKFVRWY
Sbjct: 367 DLVSILEKLLKMKAKRNIMKLPRNGDVQFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 426
Query: 408 LSYYNSA 414
++YY+
Sbjct: 427 MNYYSQG 433
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810175|ref|XP_002872971.1| UDP-D-glucuronate 4-epimerase 2 [Arabidopsis lyrata subsp. lyrata] gi|297318808|gb|EFH49230.1| UDP-D-glucuronate 4-epimerase 2 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 301/428 (70%), Positives = 352/428 (82%), Gaps = 11/428 (2%)
Query: 1 MLHLDRTPSTAGNKLKPEKFHNHRLRS---KLAVWSFLFLTVFLFFFLISPSPS------ 51
M HLD PST G K KP FH R +S KLA WS +F+ + FF SP S
Sbjct: 4 MSHLDDIPSTPG-KFKPY-FHRTRWQSSVAKLAFWSLVFVGLIFIFFYRSPVSSNPDPSR 61
Query: 52 ATFRRHSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN 111
+ R +S GGP WEK++ S R R+ RG +VLVTGAAGFVG+HVS ALK+RGDGVLGLDN
Sbjct: 62 RSLRTYSWGGPAWEKRVRSSARVRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLDN 121
Query: 112 FNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAM 171
FN+YY+ SLK+AR+ LLER+GVFV++ DIND +LL K+F VV FTHVMHLAAQAGVRYAM
Sbjct: 122 FNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAM 181
Query: 172 QNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLY 231
+NP+SYV SNIAGFVNLLE CKS++PQPAIVWASSSSVYG+N +VPFSEKDRTDQPASLY
Sbjct: 182 ENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTRVPFSEKDRTDQPASLY 241
Query: 232 AATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAP 291
AATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFTRDI++GK I+++E
Sbjct: 242 AATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGV 301
Query: 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVS 351
+ +VARDFTYIDDIVKGCL LDTA+KSTGSGGKK+G A+ R+FNLGNT+PVPV+ LV+
Sbjct: 302 NHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVT 361
Query: 352 LLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
+LE++LKVKA+ ++ LPRNGDVQFTHANIS AQRELGY PTT+L+TGLKKF RWYL YY
Sbjct: 362 ILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTNLQTGLKKFARWYLGYY 421
Query: 412 NSASASPS 419
N + S
Sbjct: 422 NGGKKAAS 429
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449480059|ref|XP_004155787.1| PREDICTED: UDP-glucuronate 4-epimerase 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 304/427 (71%), Positives = 349/427 (81%), Gaps = 13/427 (3%)
Query: 1 MLHLDRTPSTAGNKLKPEKFHNHRLR-----SKLAVWSFLFLTVFLFFFLISPSPSATFR 55
M HLD PST G + + HRLR +KL WS + L L FF SPS S
Sbjct: 1 MSHLDNIPSTPGKFKMDKSPYIHRLRWHSSLTKLTFWSLVILGSILIFFFRSPSSSPLPS 60
Query: 56 RHSS--------GGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVL 107
HS GGP WEK++ S R RS G++VLVTGAAGFVG+HVS+ALK+RGDGVL
Sbjct: 61 DHSRRSLSTYDWGGPAWEKRVRSSARVRSRNGISVLVTGAAGFVGTHVSVALKRRGDGVL 120
Query: 108 GLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGV 167
GLDNFNNYY+ SLK+AR+ LLER GVFV++ DIND +LL K+F VV FTHVMHLAAQAGV
Sbjct: 121 GLDNFNNYYDQSLKRARQALLERTGVFVVEGDINDSALLKKLFEVVPFTHVMHLAAQAGV 180
Query: 168 RYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227
RYAM+NP+SYV SNIAG V+LLE CKS++PQP+IVWASSSSVYG+N KVPFSEKDRTDQP
Sbjct: 181 RYAMENPSSYVHSNIAGLVSLLEVCKSANPQPSIVWASSSSVYGLNTKVPFSEKDRTDQP 240
Query: 228 ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITV 287
ASLYAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFTRDI++GK I +
Sbjct: 241 ASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKSIPI 300
Query: 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVS 347
+E D +VARDFTYIDDIVKGCLA LDTA+KSTGSGGKKKGPA+ R+FNLGNT+PVPVS
Sbjct: 301 FEGADHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKKGPAQLRVFNLGNTSPVPVS 360
Query: 348 RLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
LVS+LEK+LK+KA+ ++ LPRNGDVQFTHANISLAQRELGY PTTDL+TGLKKFVRWY
Sbjct: 361 DLVSILEKLLKMKAKRNIMKLPRNGDVQFTHANISLAQRELGYKPTTDLQTGLKKFVRWY 420
Query: 408 LSYYNSA 414
++YY+
Sbjct: 421 MNYYSQG 427
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359489543|ref|XP_002280994.2| PREDICTED: UDP-glucuronate 4-epimerase 3-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 299/425 (70%), Positives = 351/425 (82%), Gaps = 8/425 (1%)
Query: 1 MLHLDRTPSTAGNKLKPEKFHNHRLRSKLAVWSFLFL-TVFLFFFLISPSPSA------- 52
M HLD PST G ++ H +KL WSF+F +F+ FL S S
Sbjct: 86 MSHLDNIPSTPGKFKMEKRLRWHSSLAKLTFWSFVFSGLIFIVLFLSPSSSSLPSDPTRR 145
Query: 53 TFRRHSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF 112
+ R HS GGP WEK++ S + R+ G++VLVTGAAGFVG+HVS ALK+RGDGV+GLDNF
Sbjct: 146 SLRTHSWGGPAWEKRVRSSAKVRARNGISVLVTGAAGFVGTHVSAALKRRGDGVIGLDNF 205
Query: 113 NNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQ 172
N+YY+ SLK+AR+ LLER GVF+++ DIND LL K+F VVAFTHVMHLAAQAGVRYAM+
Sbjct: 206 NDYYDPSLKRARQALLERTGVFIVEGDINDSKLLKKLFEVVAFTHVMHLAAQAGVRYAME 265
Query: 173 NPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYA 232
NP+SYV SNIAG VNLLE CKS++PQPAIVWASSSSVYG+N KVPFSE+DRTDQPASLYA
Sbjct: 266 NPSSYVHSNIAGLVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSERDRTDQPASLYA 325
Query: 233 ATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPD 292
ATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFTRDI++ K I ++EAP+
Sbjct: 326 ATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKEKSIPIFEAPN 385
Query: 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSL 352
+VARDFTYIDDIVKGC+A LDTA+KSTGSGGKKKGPA+ RIFNLGNT+PVPV+ LVS+
Sbjct: 386 RGTVARDFTYIDDIVKGCVAALDTAEKSTGSGGKKKGPAQLRIFNLGNTSPVPVTDLVSI 445
Query: 353 LEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412
LE++LKVKA+ K++ +PRNGDVQFTHANISLAQRELGY PTTDL+TGLKKFVRWYL YY+
Sbjct: 446 LERLLKVKAKRKMIKMPRNGDVQFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLKYYS 505
Query: 413 SASAS 417
+ S
Sbjct: 506 AGEKS 510
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454018|ref|XP_002281007.1| PREDICTED: UDP-glucuronate 4-epimerase 3-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 294/422 (69%), Positives = 353/422 (83%), Gaps = 8/422 (1%)
Query: 1 MLHLDRTPSTAGNKLKPEKFHNHRLRSKLAVWSFLFL-TVFLFFFLISPSPSA------- 52
M HLD PST G ++ H +KL WSF+F +F+FFF S S
Sbjct: 7 MSHLDNIPSTPGKFKMEKRLRWHSSLAKLTFWSFVFSGLIFIFFFRSPSSSSLPSDSSIR 66
Query: 53 TFRRHSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF 112
+FR +S GGP WEK++ S + R+ G++VLVTGAAGFVG+HVS ALK+RGDGV+GLDNF
Sbjct: 67 SFRSYSWGGPAWEKRVRSSAKVRARNGISVLVTGAAGFVGTHVSAALKRRGDGVVGLDNF 126
Query: 113 NNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQ 172
N+YY+ SLK+AR+ LLER GVF+++ DIND LL K+F+VV FTHVMHLAAQAGVRYAM+
Sbjct: 127 NDYYDPSLKRARQALLERTGVFIVEGDINDSELLKKLFDVVTFTHVMHLAAQAGVRYAME 186
Query: 173 NPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYA 232
NP+SYV SNIAG VNLLE CKS++PQPAIVWASSSSVYG+N KVPFSE+DRTDQPASLYA
Sbjct: 187 NPSSYVHSNIAGLVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSERDRTDQPASLYA 246
Query: 233 ATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPD 292
ATKKAGE +AH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFTRDI++ K I ++EAP+
Sbjct: 247 ATKKAGEEMAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKEKSIPIFEAPN 306
Query: 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSL 352
+VARDFTYIDDIVKGC+A LDTA+KSTGSGGKKKGPA+ R+FNLGNT+PVPV+ LV++
Sbjct: 307 HGTVARDFTYIDDIVKGCVAALDTAEKSTGSGGKKKGPAQLRVFNLGNTSPVPVTDLVNI 366
Query: 353 LEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412
LE++LKVKA+ K++ +PRNGDVQFTHANISLAQRELGY PTTDL+TGLKKFV+WYL+YY+
Sbjct: 367 LERLLKVKAKRKMIKMPRNGDVQFTHANISLAQRELGYKPTTDLQTGLKKFVKWYLNYYS 426
Query: 413 SA 414
+
Sbjct: 427 AG 428
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506372|ref|XP_003521958.1| PREDICTED: UDP-glucuronate 4-epimerase 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 297/425 (69%), Positives = 350/425 (82%), Gaps = 13/425 (3%)
Query: 1 MLHLDRTPSTAGN-KLKPEKFHN----HRLRSKLAVWSFLFLTVFLFFFLISPSPSA--- 52
M H+D P T G K+ + N H +KLAVWSF+FL L FFL SP+ S
Sbjct: 7 MSHIDSAPPTPGKFKMDKASYFNRVRWHTSLAKLAVWSFVFLGAILIFFLRSPASSPVPA 66
Query: 53 -----TFRRHSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVL 107
+ R ++ GGP WEK++ S + RS G VLVTGAAGFVG+HVS ALK+RGDGVL
Sbjct: 67 DLSRRSLRTYNWGGPVWEKRVRASAQVRSRNGFAVLVTGAAGFVGTHVSAALKRRGDGVL 126
Query: 108 GLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGV 167
GLDNFN+YY+ SLK+AR+GLLER GV++++ DIND++LL K+F VV FTHVMHLAAQAGV
Sbjct: 127 GLDNFNDYYDPSLKRARQGLLERNGVYIVEGDINDEALLRKLFEVVPFTHVMHLAAQAGV 186
Query: 168 RYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227
RYAM+NP SYV SNIAGFVNLLE CKS +PQPAIVWASSSSVYG+N KVPFSE+DRTDQP
Sbjct: 187 RYAMENPGSYVHSNIAGFVNLLEVCKSVNPQPAIVWASSSSVYGLNTKVPFSERDRTDQP 246
Query: 228 ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITV 287
ASLYAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFTRD+++GK I +
Sbjct: 247 ASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDLLKGKPIPI 306
Query: 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVS 347
+EA + +VARDFTYIDDIV+GCL LDTA+KSTGSGGKK+GPA+ R+FNLGNT+PVPVS
Sbjct: 307 FEAANHGTVARDFTYIDDIVRGCLGALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVS 366
Query: 348 RLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
LVS+LE++LKVKA+ ++ LPRNGDVQFTHANIS AQ ELGY PTTDL++GLKKFVRWY
Sbjct: 367 DLVSILERLLKVKAKRNIMKLPRNGDVQFTHANISYAQSELGYKPTTDLQSGLKKFVRWY 426
Query: 408 LSYYN 412
L+YY+
Sbjct: 427 LNYYS 431
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 424 | ||||||
| TAIR|locus:2139134 | 436 | GAE5 "UDP-D-glucuronate 4-epim | 0.988 | 0.961 | 0.678 | 2.4e-154 | |
| TAIR|locus:2126846 | 430 | GAE3 "UDP-D-glucuronate 4-epim | 0.983 | 0.969 | 0.678 | 5.2e-152 | |
| TAIR|locus:2050921 | 437 | GAE4 "UDP-D-glucuronate 4-epim | 0.882 | 0.855 | 0.708 | 1.2e-151 | |
| TAIR|locus:2025472 | 434 | GAE2 "UDP-D-glucuronate 4-epim | 0.969 | 0.947 | 0.671 | 3.8e-149 | |
| TAIR|locus:2118711 | 429 | GAE1 "UDP-D-glucuronate 4-epim | 0.950 | 0.939 | 0.630 | 4.7e-135 | |
| TAIR|locus:2076066 | 460 | GAE6 "UDP-D-glucuronate 4-epim | 0.851 | 0.784 | 0.656 | 1.9e-131 | |
| TIGR_CMR|CBU_0844 | 339 | CBU_0844 "capsular polysacchar | 0.773 | 0.967 | 0.466 | 9e-77 | |
| TIGR_CMR|GSU_2241 | 336 | GSU_2241 "capsular polysacchar | 0.768 | 0.970 | 0.456 | 1.5e-74 | |
| UNIPROTKB|Q8E8H8 | 335 | wcvA "UDP-glucuronate 4-epimer | 0.764 | 0.967 | 0.462 | 6.5e-74 | |
| TIGR_CMR|SO_4686 | 335 | SO_4686 "NAD dependent epimera | 0.764 | 0.967 | 0.462 | 6.5e-74 |
| TAIR|locus:2139134 GAE5 "UDP-D-glucuronate 4-epimerase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1505 (534.8 bits), Expect = 2.4e-154, P = 2.4e-154
Identities = 295/435 (67%), Positives = 342/435 (78%)
Query: 1 MLHLDRTPSTAG----NKLKPEKF-HNHR-LR-SKLAVWSXXXXXXXXXXXXISPSPSAT 53
M HLD PST G +K+ P H+HR LR SKL +W+ +SP PS +
Sbjct: 1 MSHLDDLPSTPGKYKTDKVPPYGILHHHRYLRLSKLTLWASLFLALFLFYLVLSPPPSPS 60
Query: 54 FRR---HSS------GGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGD 104
R SS GG WEKQ+ KS RPRS GLTVLVTGA+GFVG+HVS+AL++RGD
Sbjct: 61 RRNLNDSSSISAAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGD 120
Query: 105 GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQ 164
GVLGLDNFN YY+ LK+AR+GLLER+GVFV++ DIND LL K+F+VV FTHVMHLAAQ
Sbjct: 121 GVLGLDNFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQ 180
Query: 165 AGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224
AGVRYAMQNP SYV SNIAGFVNLLE KS++PQPAIVWASSSSVYG+N KVPFSEKDRT
Sbjct: 181 AGVRYAMQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDRT 240
Query: 225 DQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKR 284
DQPASLYAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFT+DI++GK
Sbjct: 241 DQPASLYAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKT 300
Query: 285 ITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPV 344
ITV+E+PD SVARDFTYIDDIVKGCL LDTA PA FRI+NLGNT+PV
Sbjct: 301 ITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPV 360
Query: 345 PVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFV 404
PV++LV++LEK+LK+KA+ K++PLPRNGDV+FTHANI+LAQ ELGY P DLETGLKKFV
Sbjct: 361 PVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFV 420
Query: 405 RWYLSYYNSASASPS 419
+WY+ +Y + S
Sbjct: 421 KWYMGFYTGSKKKSS 435
|
|
| TAIR|locus:2126846 GAE3 "UDP-D-glucuronate 4-epimerase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
Identities = 291/429 (67%), Positives = 335/429 (78%)
Query: 1 MLHLDRTPSTAGNKLKPEKFHNHRLRS---KLAVWSXXXXXXXXXXXXISP------SPS 51
M HLD PST G K KP FH R +S KLA WS SP PS
Sbjct: 4 MSHLDDIPSTPG-KFKPY-FHRTRWQSSVAKLAFWSLVFVGLIFIFFYRSPVSSNPADPS 61
Query: 52 A-TFRRHSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLD 110
+ R +S GGP WEK++ S R R+ RG +VLVTGAAGFVG+HVS ALK+RGDGVLGLD
Sbjct: 62 RRSLRTYSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLD 121
Query: 111 NFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYA 170
NFN+YY+ SLK+AR+ LLER+GVFV++ DIND +LL K+F VV FTHVMHLAAQAGVRYA
Sbjct: 122 NFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYA 181
Query: 171 MQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL 230
M+NP+SYV SNIAGFVNLLE CKS++PQPAIVWASSSSVYG+N KVPFSEKDRTDQPASL
Sbjct: 182 MENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASL 241
Query: 231 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEA 290
YAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFTRDI++GK I+++E
Sbjct: 242 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEG 301
Query: 291 PDGASVARDFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLV 350
+ +VARDFTYIDDIVKGCL LDTA A+ R+FNLGNT+PVPV+ LV
Sbjct: 302 VNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLV 361
Query: 351 SLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410
++LE++LKVKA+ ++ LPRNGDVQFTHANIS AQRELGY PTTDL+TGLKKF RWYL Y
Sbjct: 362 TILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYLGY 421
Query: 411 YNSASASPS 419
YN + S
Sbjct: 422 YNGGKKAAS 430
|
|
| TAIR|locus:2050921 GAE4 "UDP-D-glucuronate 4-epimerase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1424 (506.3 bits), Expect = 1.2e-151, Sum P(2) = 1.2e-151
Identities = 268/378 (70%), Positives = 319/378 (84%)
Query: 47 SPS-PSA-TFRRHSSGGPQWEKQIVKSTRPRST--RGLTVLVTGAAGFVGSHVSLALKKR 102
SPS PS + R ++ GGP WEK++ S R R++ G+TVLVTGAAGFVG+HVS ALK+R
Sbjct: 60 SPSDPSRRSLRTNTYGGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRR 119
Query: 103 GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLA 162
GDGV+GLDNFN+YY+ SLK+AR+ LLER+G+F+++ DIND LL K+F +V+FTHVMHLA
Sbjct: 120 GDGVIGLDNFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLA 179
Query: 163 AQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222
AQAGVRYAM+NP+SYV SNIAGFVNLLE CKS +PQPAIVWASSSSVYG+N KVPFSEKD
Sbjct: 180 AQAGVRYAMENPSSYVHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKD 239
Query: 223 RTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRG 282
+TDQPASLYAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFT+DI++G
Sbjct: 240 KTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKG 299
Query: 283 KRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTT 342
K I+++E+ + +VARDFTYIDDIVKGCLA LDTA PA+ R+FNLGNT+
Sbjct: 300 KSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTS 359
Query: 343 PVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKK 402
PVPVS LV +LE+ LKVKA+ ++ +PRNGDV FTHANISLAQRELGY PTTDL+TGLKK
Sbjct: 360 PVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKK 419
Query: 403 FVRWYLSYYNSASASPSR 420
FVRWYLSYY+ + +R
Sbjct: 420 FVRWYLSYYSGDKKAAAR 437
|
|
| TAIR|locus:2025472 GAE2 "UDP-D-glucuronate 4-epimerase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1456 (517.6 bits), Expect = 3.8e-149, P = 3.8e-149
Identities = 284/423 (67%), Positives = 331/423 (78%)
Query: 1 MLHLDRTPSTAGNKLKPEK--FHNHRLR-----SKLAVWSXXXXXXXXXXXXISP--SPS 51
M HLD PST G +K F HR R +KLA WS SP +P
Sbjct: 1 MSHLDDIPSTPGKFKMMDKSPFFLHRTRWQSSVAKLAFWSLVFFGLLFIFFYRSPISNPD 60
Query: 52 AT---FRRHSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLG 108
++ R +S GGP WEK++ S R R+ G++VLVTGAAGFVG+HVS ALK+RGDGVLG
Sbjct: 61 SSRRSLRTYSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLG 120
Query: 109 LDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVR 168
LDNFN+YY+TSLK++R+ LLER+GVF+++ DIND SLL K+F VV FTHVMHLAAQAGVR
Sbjct: 121 LDNFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVR 180
Query: 169 YAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPA 228
YAM+NP SYV SNIAGFVNLLE CKS++PQPAIVWASSSSVYG+N KVPFSEKDRTDQPA
Sbjct: 181 YAMENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPA 240
Query: 229 SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVY 288
SLYAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFTRDI++GK I+++
Sbjct: 241 SLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIF 300
Query: 289 EAPDGASVARDFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSR 348
E + +VARDFTYIDDIVKGCL LDTA A+ R+FNLGNT+PVPV+
Sbjct: 301 EGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTD 360
Query: 349 LVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYL 408
LVS+LE++LKVKA+ ++ LPRNGDV FTHANIS AQRE GY P+TDL+TGLKKFVRWYL
Sbjct: 361 LVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYL 420
Query: 409 SYY 411
YY
Sbjct: 421 GYY 423
|
|
| TAIR|locus:2118711 GAE1 "UDP-D-glucuronate 4-epimerase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1323 (470.8 bits), Expect = 4.7e-135, P = 4.7e-135
Identities = 259/411 (63%), Positives = 306/411 (74%)
Query: 8 PSTAGNKLKPEKFHN--HRL---RSKLAVWSXXXXXXXXXXXXISP--SPSATFRRHSSG 60
PST G K K ++ + HR S + +W+ + + S G
Sbjct: 10 PSTPG-KFKIDRSNRQLHRCFASTSTMFLWALFLIALTASYLSFQSFVDSGSRYLTASWG 68
Query: 61 GPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSL 120
G QWEKQ+ S + + G++VLVTGA GFVGSHVSLAL+KRGDGV+GLDNFNNYY+ SL
Sbjct: 69 GIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPSL 128
Query: 121 KKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVES 180
K+AR+ LL G+FV++ D+ND LL K+F+VVAFTHVMHLAAQAGVRYA++NP SYV S
Sbjct: 129 KRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVHS 188
Query: 181 NIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEA 240
NIAG VNLLE CK+++PQPAIVWASSSSVYG+N+KVPFSE DRTDQPASLYAATKKAGE
Sbjct: 189 NIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASLYAATKKAGEE 248
Query: 241 IAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300
I H YNHIYGL+ITGLRFFTVYGPWGRPDMAYF FTR+I++GK IT+Y + +ARDF
Sbjct: 249 ITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRGKNRVDLARDF 308
Query: 301 TYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK 360
TYIDDIVKGCL LD++ A +RIFNLGNT+PV V LV +LEK LKVK
Sbjct: 309 TYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILVDILEKHLKVK 368
Query: 361 AETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
A+ + +P NGDV FTHANIS A+ E GY PTTDLETGLKKFVRWYLSYY
Sbjct: 369 AKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLSYY 419
|
|
| TAIR|locus:2076066 GAE6 "UDP-D-glucuronate 4-epimerase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1289 (458.8 bits), Expect = 1.9e-131, P = 1.9e-131
Identities = 237/361 (65%), Positives = 289/361 (80%)
Query: 51 SATFRRHSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLD 110
S++ S GG WEK++ +S+ + GL+VLVTGAAGFVGSH SLAL+KRGDGVLG D
Sbjct: 83 SSSSSSSSIGGAAWEKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCSLALRKRGDGVLGFD 142
Query: 111 NFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYA 170
NFN+YY+ SLK+AR+ LLE+ VF+++ D+ND LL K+F+VV FTH++HLAAQAGVRYA
Sbjct: 143 NFNDYYDPSLKRARQELLEKQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYA 202
Query: 171 MQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL 230
M+NP SY+ SNIAGFVNLLE K+++PQPAIVWASSSSVYG+N + PFSE+ RTDQPASL
Sbjct: 203 MKNPQSYIASNIAGFVNLLEVAKAANPQPAIVWASSSSVYGLNTENPFSEEHRTDQPASL 262
Query: 231 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEA 290
YAATKKAGE IAH YNHIYGLS+TGLRFFTVYGPWGRPDMAYFFFT+DI+ GK I +Y
Sbjct: 263 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILHGKSIDIYRT 322
Query: 291 PDGASVARDFTYIDDIVKGCLAGLDTAXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLV 350
D VARDFTYIDDIVKGC+ LDTA A+ R++NLGNT+PVPV RLV
Sbjct: 323 QDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLV 382
Query: 351 SLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410
S+LE +L KA+ ++ +PRNGDV +THAN+SLA ++ GY PTTDL GL+KFV+WY+ Y
Sbjct: 383 SILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGY 442
Query: 411 Y 411
Y
Sbjct: 443 Y 443
|
|
| TIGR_CMR|CBU_0844 CBU_0844 "capsular polysaccharide biosynthesis protein I" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 158/339 (46%), Positives = 219/339 (64%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA- 138
+ LVTG AGF+G H++ L RGD +LGLDN N+YY+ +LK+AR L+ F
Sbjct: 6 MRTLVTGCAGFIGFHLTKRLLARGDHILGLDNLNDYYDVNLKEARLAQLKEFPHFSFHKL 65
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D+ D+ + +F F V+HLAAQAGVRY++ NP +YV+SN+ GF ++LE C+ +
Sbjct: 66 DLADRQGMTDLFQKHLFDTVVHLAAQAGVRYSLTNPYAYVDSNLVGFAHILEGCRHQSVK 125
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
+V+ASSSSVYG N+K PFSE D D P +LYAA+KKA E +AH+Y H++ L TGLRF
Sbjct: 126 H-LVFASSSSVYGANEKYPFSESDNVDHPIALYAASKKANELMAHSYAHLFQLPCTGLRF 184
Query: 259 FTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD-TA 317
FTVYGPWGRPDMA F FTR+++ K I VY + ++RDFTYIDDIV G L LD
Sbjct: 185 FTVYGPWGRPDMALFKFTRNLLADKPIDVY---NHGKMSRDFTYIDDIVDGILLTLDHPP 241
Query: 318 XXXXXXXXXXXXPAE----FRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGD 373
PA+ +RI+N+G+ P+ ++ +++LEK L KA LPL + GD
Sbjct: 242 EPNSAYSANQPNPAKSNAPYRIYNIGSNNPILLTNFIAILEKTLNKKAIKNFLPL-QPGD 300
Query: 374 VQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412
V T+A++S +++ Y P T L+ G+K FV WYL Y++
Sbjct: 301 VPETYADVSQLEKDFQYRPRTPLQKGVKNFVEWYLQYFS 339
|
|
| TIGR_CMR|GSU_2241 GSU_2241 "capsular polysaccharide biosynthesis protein I" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 154/337 (45%), Positives = 214/337 (63%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLE-RAGVFVIDAD 139
++LVTGAAGF+G H++ L RGD V+GLDN N+YY+ +LK R LE R G +
Sbjct: 3 SILVTGAAGFIGFHLTKRLLDRGDRVVGLDNLNDYYDVNLKLDRLRQLEGREGFSFVRTS 62
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ D+ L+ +F F V++LAAQAGVRY++ NP++YV+SN+ GF+N+LE C+ +
Sbjct: 63 LADRPALEDLFAGQRFDVVVNLAAQAGVRYSITNPHAYVDSNLVGFINILEGCRHHGVKH 122
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
+V+ASSSSVYG N +PFS D P SLYAATKKA E +AH Y+ +YGL TGLRFF
Sbjct: 123 -LVYASSSSVYGANTAMPFSIHHNVDHPVSLYAATKKANELMAHTYSSLYGLPTTGLRFF 181
Query: 260 TVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD-TAX 318
TVYGPWGRPDMA F FT+ I+ G+ I VY + RDFTY+DDIV+G +D T
Sbjct: 182 TVYGPWGRPDMALFLFTKAILEGRPIDVYNF---GKMQRDFTYVDDIVEGVTRVMDRTPE 238
Query: 319 XXXXXXXXXXXP----AEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDV 374
P A +RI+N+GN PV + + +E+ L + A+ +LPL + GDV
Sbjct: 239 PNPAWSGARPDPGTSYAPYRIYNIGNNNPVELLAFIEAIEQNLGITAQKNLLPL-QAGDV 297
Query: 375 QFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
T+A++ ++G+ P T + G+++FV WY YY
Sbjct: 298 PATYADVDDLMNDVGFKPATPIGEGIERFVEWYRGYY 334
|
|
| UNIPROTKB|Q8E8H8 wcvA "UDP-glucuronate 4-epimerase WcvA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 155/335 (46%), Positives = 216/335 (64%)
Query: 83 LVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVF-VIDADIN 141
LVTGAAGF+G++VS L G V+G+DN N+YY+ +LK AR LE F I D+
Sbjct: 4 LVTGAAGFIGANVSKRLCAMGHEVVGIDNLNDYYDVALKLARLAPLEALSNFHFIKLDLA 63
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D+ + K+F F V+HLAAQAGVRY++ NP +Y +SN+ G + +LE C+ + +
Sbjct: 64 DREGIAKLFAQQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIEH-L 122
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
V+ASSSSVYG+N+K+PFS +D D P SLYAATKKA E ++H Y+H+Y L TGLRFFTV
Sbjct: 123 VYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFFTV 182
Query: 262 YGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD-----T 316
YGPWGRPDMA F FT+ I+ G+ I VY D ++RDFTYIDDIV+G + D T
Sbjct: 183 YGPWGRPDMALFKFTKAILAGETIDVYNHGD---LSRDFTYIDDIVEGIIRVQDKPPSPT 239
Query: 317 AXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQF 376
A +R+FN+GN +PV + ++ LE+ L ++A+ + LP+ + GDV
Sbjct: 240 PDWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALERALGIEAKKQFLPM-QPGDVHA 298
Query: 377 THANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
T A+ + +GY D++TG+ KFV WY ++Y
Sbjct: 299 TWADTEDLFKAVGYKSQVDIDTGVAKFVDWYRNFY 333
|
|
| TIGR_CMR|SO_4686 SO_4686 "NAD dependent epimerase/dehydratase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 155/335 (46%), Positives = 216/335 (64%)
Query: 83 LVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVF-VIDADIN 141
LVTGAAGF+G++VS L G V+G+DN N+YY+ +LK AR LE F I D+
Sbjct: 4 LVTGAAGFIGANVSKRLCAMGHEVVGIDNLNDYYDVALKLARLAPLEALSNFHFIKLDLA 63
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D+ + K+F F V+HLAAQAGVRY++ NP +Y +SN+ G + +LE C+ + +
Sbjct: 64 DREGIAKLFAQQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIEH-L 122
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
V+ASSSSVYG+N+K+PFS +D D P SLYAATKKA E ++H Y+H+Y L TGLRFFTV
Sbjct: 123 VYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRFFTV 182
Query: 262 YGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD-----T 316
YGPWGRPDMA F FT+ I+ G+ I VY D ++RDFTYIDDIV+G + D T
Sbjct: 183 YGPWGRPDMALFKFTKAILAGETIDVYNHGD---LSRDFTYIDDIVEGIIRVQDKPPSPT 239
Query: 317 AXXXXXXXXXXXXPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQF 376
A +R+FN+GN +PV + ++ LE+ L ++A+ + LP+ + GDV
Sbjct: 240 PDWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALERALGIEAKKQFLPM-QPGDVHA 298
Query: 377 THANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
T A+ + +GY D++TG+ KFV WY ++Y
Sbjct: 299 TWADTEDLFKAVGYKSQVDIDTGVAKFVDWYRNFY 333
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9STI6 | GAE5_ARATH | 5, ., 1, ., 3, ., 6 | 0.7192 | 0.9740 | 0.9472 | no | no |
| O81312 | GAE3_ARATH | 5, ., 1, ., 3, ., 6 | 0.7062 | 0.9834 | 0.9697 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GAE3 | GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3); UDP-glucuronate 4-epimerase/ catalytic; Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase. ; Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components (430 aa) | ||||||||||
(Arabidopsis thaliana) | |||||||||||
Predicted Functional Partners: | |||||||||||
| UGD1 | UGD1 (UDP-GLUCOSE DEHYDROGENASE 1); NAD or NADH binding / UDP-glucose 6-dehydrogenase/ binding [...] (481 aa) | • | • | • | 0.979 | ||||||
| AT3G29360 | UDP-glucose 6-dehydrogenase, putative; UDP-glucose 6-dehydrogenase, putative; FUNCTIONS IN- in [...] (480 aa) | • | • | • | 0.974 | ||||||
| GAUT1 | GAUT1 (GALACTURONOSYLTRANSFERASE 1); polygalacturonate 4-alpha-galacturonosyltransferase/ trans [...] (673 aa) | • | • | 0.943 | |||||||
| AT5G39320 | UDP-glucose 6-dehydrogenase, putative; UDP-glucose 6-dehydrogenase, putative; FUNCTIONS IN- in [...] (480 aa) | • | • | • | 0.925 | ||||||
| AT5G15490 | UDP-glucose 6-dehydrogenase, putative; UDP-glucose 6-dehydrogenase, putative; FUNCTIONS IN- in [...] (480 aa) | • | • | • | 0.923 | ||||||
| GAUT12 | GAUT12 (GALACTURONOSYLTRANSFERASE 12); polygalacturonate 4-alpha-galacturonosyltransferase/ tra [...] (535 aa) | • | 0.899 | ||||||||
| GAUT4 | GAUT4 (Galacturonosyltransferase 4); polygalacturonate 4-alpha-galacturonosyltransferase/ trans [...] (616 aa) | • | 0.899 | ||||||||
| GAUT14 | GAUT14 (Galacturonosyltransferase 14); polygalacturonate 4-alpha-galacturonosyltransferase/ tra [...] (532 aa) | • | 0.899 | ||||||||
| GAUT3 | GAUT3 (Galacturonosyltransferase 3); polygalacturonate 4-alpha-galacturonosyltransferase/ trans [...] (680 aa) | • | 0.899 | ||||||||
| GAUT15 | GAUT15 (Galacturonosyltransferase 15); polygalacturonate 4-alpha-galacturonosyltransferase/ tra [...] (540 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 424 | |||
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 1e-166 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 3e-78 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 2e-67 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 7e-53 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 8e-51 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 2e-50 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 3e-49 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 1e-46 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 2e-42 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 8e-39 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 3e-38 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 5e-36 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 2e-32 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 4e-32 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 4e-32 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 6e-32 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 9e-32 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 5e-31 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 7e-31 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 2e-30 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 2e-30 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 3e-28 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 7e-28 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 2e-26 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 1e-25 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 6e-20 | |
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 4e-19 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 9e-19 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 1e-18 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 4e-17 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 9e-17 | |
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 5e-16 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 7e-16 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 3e-15 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 4e-15 | |
| cd05261 | 248 | cd05261, CAPF_like_SDR_e, capsular polysaccharide | 4e-15 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 1e-14 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 3e-14 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 6e-14 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 7e-14 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 2e-13 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 5e-13 | |
| PRK11908 | 347 | PRK11908, PRK11908, NAD-dependent epimerase/dehydr | 7e-12 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 3e-11 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 6e-11 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 7e-11 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 2e-10 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 2e-10 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 3e-10 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 1e-09 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 2e-09 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 2e-08 | |
| PLN02725 | 306 | PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5- | 2e-08 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 1e-07 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 1e-07 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 2e-07 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 2e-07 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 3e-07 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 4e-07 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 2e-06 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 2e-06 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 2e-06 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 8e-06 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 2e-05 | |
| PLN02572 | 442 | PLN02572, PLN02572, UDP-sulfoquinovose synthase | 6e-05 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 3e-04 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 4e-04 | |
| TIGR01777 | 291 | TIGR01777, yfcH, TIGR01777 family protein | 5e-04 | |
| PRK05872 | 296 | PRK05872, PRK05872, short chain dehydrogenase; Pro | 6e-04 | |
| PLN02896 | 353 | PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | 0.001 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 0.001 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 0.002 | |
| cd05266 | 251 | cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | 0.004 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 0.004 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 470 bits (1211), Expect = e-166
Identities = 175/336 (52%), Positives = 232/336 (69%), Gaps = 11/336 (3%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFV-IDAD 139
+LVTGAAGF+G HV+ L +RGD V+G+DN N+YY+ LK+AR LL ++G F + D
Sbjct: 2 KILVTGAAGFIGFHVAKRLLERGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVKGD 61
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ D+ L ++F F V+HLAAQAGVRY+++NP++YV+SNI GF+NLLE C+ +
Sbjct: 62 LEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFGVK- 120
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
+V+ASSSSVYG+N K+PFSE DR D P SLYAATKKA E +AH Y+H+YG+ TGLRFF
Sbjct: 121 HLVYASSSSVYGLNTKMPFSEDDRVDHPISLYAATKKANELMAHTYSHLYGIPTTGLRFF 180
Query: 260 TVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319
TVYGPWGRPDMA F FT+ I+ GK I V+ DG +++RDFTYIDDIV+G + LDT K
Sbjct: 181 TVYGPWGRPDMALFLFTKAILEGKPIDVFN--DG-NMSRDFTYIDDIVEGVVRALDTPAK 237
Query: 320 STGSG-----GKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDV 374
+ A +R++N+GN +PV + + LEK L KA+ LP+ + GDV
Sbjct: 238 PNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEALEKALGKKAKKNYLPMQK-GDV 296
Query: 375 QFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410
T+A+IS QR LGY P T LE G+K+FV WY
Sbjct: 297 PETYADISKLQRLLGYKPKTSLEEGVKRFVEWYKEN 332
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 244 bits (624), Expect = 3e-78
Identities = 114/330 (34%), Positives = 168/330 (50%), Gaps = 31/330 (9%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
VLVTG AGF+GSH+ L +RG V+ LDN + + +L + + + I+ DI
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEVKPNVK------FIEGDIR 55
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D L++ F V +V H AAQA V ++++P E N+ G +NLLE + + +
Sbjct: 56 DDELVEFAFEGV--DYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVK-RF 112
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
V+ASSSSVYG +P E P S YA +K AGE + +YGL LR+F V
Sbjct: 113 VYASSSSVYGDPPYLPKDEDHPP-NPLSPYAVSKYAGELYCQVFARLYGLPTVSLRYFNV 171
Query: 262 YGPWGRPDMAYF----FFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317
YGP P+ Y F ++G+ T+Y DG RDFTY++D+V+ L A
Sbjct: 172 YGPRQDPNGGYAAVIPIFIERALKGEPPTIYG--DGEQT-RDFTYVEDVVEANLL----A 224
Query: 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFT 377
+ G ++N+G V+ L L+ +IL + E P PR GDV+ +
Sbjct: 225 ATAGAGGE---------VYNIGTGKRTSVNELAELIREILGKELEPVYAP-PRPGDVRHS 274
Query: 378 HANISLAQRELGYMPTTDLETGLKKFVRWY 407
A+IS A++ LG+ P E GL+ V W+
Sbjct: 275 LADISKAKKLLGWEPKVSFEEGLRLTVEWF 304
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 217 bits (553), Expect = 2e-67
Identities = 105/338 (31%), Positives = 163/338 (48%), Gaps = 36/338 (10%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+LVTG AGF+GSH+ L G V GLD + + +GV + D+
Sbjct: 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPL----------LSGVEFVVLDLT 52
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAM-QNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D+ L+D++ V V+HLAAQ+ V + +P +++ N+ G +NLLE +++ +
Sbjct: 53 DRDLVDELAKGVP-DAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKR- 110
Query: 201 IVWASS-SSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
V+ASS S VYG +P E +P + Y +K A E + AY +YGL + LR F
Sbjct: 111 FVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPF 170
Query: 260 TVYGPWGRPDMAYFF---FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316
VYGP +PD++ F R +++G+ I V S RDF Y+DD+ L L+
Sbjct: 171 NVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVI--GGDGSQTRDFVYVDDVADALLLALEN 228
Query: 317 AKKSTGSGGKKKGPAEFRIFNLGN-TTPVPVSRLVSLLEKILKVKAET-KVLPLPRNGDV 374
+ +FN+G+ T + V L + + + KA +PL R GD+
Sbjct: 229 --------------PDGGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDL 274
Query: 375 Q-FTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
+ +IS A+ LG+ P LE GL + W L
Sbjct: 275 REGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKL 312
|
Length = 314 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 7e-53
Identities = 77/260 (29%), Positives = 113/260 (43%), Gaps = 62/260 (23%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+LVTG AGF+GSH+ L +RG V+ +D
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDRL----------------------------- 31
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
V+HLAA GV + NP+ E+N+ G +NLLE + + +
Sbjct: 32 --------------DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKR-F 76
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
V+ASS+SVYG + +P E+ +P S Y +K A E + +Y YGL + LR V
Sbjct: 77 VYASSASVYGSPEGLPEEEETPP-RPLSPYGVSKLAAEHLLRSYGESYGLPVVILRLANV 135
Query: 262 YGPWGRP--DMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319
YGP RP D F R + GK +TV+ G RDF ++DD+V+ L L
Sbjct: 136 YGPGQRPRLDGVVNDFIRRALEGKPLTVFG--GGNQT-RDFIHVDDVVRAILHAL----- 187
Query: 320 STGSGGKKKGPAEFRIFNLG 339
+ ++N+G
Sbjct: 188 -------ENPLEGGGVYNIG 200
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 173 bits (442), Expect = 8e-51
Identities = 100/353 (28%), Positives = 157/353 (44%), Gaps = 57/353 (16%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
VLVTG AG++GSH + L + G V+ LDN +N + +L + +E+ + + DI
Sbjct: 1 KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGHREALPR-----IEKIRIEFYEGDI 55
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D++ LDK+F V+H AA V ++Q P Y ++N+ G +NLLE ++ +
Sbjct: 56 RDRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGVKN- 114
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
V++SS++VYG + VP +E+ P + Y TK E I GL+ LR+F
Sbjct: 115 FVFSSSAAVYGEPETVPITEEAPL-NPTNPYGRTKLMVEQILRDLAKAPGLNYVILRYFN 173
Query: 261 VYG--PWGR------------PDMAYFFFTRDIIRGKR--ITV----YEAPDGASVARDF 300
G P G P + G+R + + Y PDG V RD+
Sbjct: 174 PAGAHPSGLIGEDPQIPNNLIPYVLQVAL------GRREKLAIFGDDYPTPDGTCV-RDY 226
Query: 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK 360
++ D+ + L+ + G I+NLG R S+LE + +
Sbjct: 227 IHVVDLADAHVLALEKLENGGG----------SEIYNLGT------GRGYSVLEVVEAFE 270
Query: 361 AETKVLPLP------RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
+ P+P R GD A+ S A+ ELG+ P DLE + W
Sbjct: 271 KVSGK-PIPYEIAPRRAGDPASLVADPSKAREELGWKPKRDLEDMCEDAWNWQ 322
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 2e-50
Identities = 82/261 (31%), Positives = 119/261 (45%), Gaps = 31/261 (11%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+LVTG GF+GSH+ L + G V+ L ++ R L + + D+
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVIVL----------GRRRRSESLNTGRIRFHEGDLT 50
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D L+++ V V+HLAAQ+GV + ++P ++ +N+ G + LLE + +
Sbjct: 51 DPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGV-KRF 109
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
V+ASSS VYG P +E P S YAA K A E + AY YGL LR F V
Sbjct: 110 VFASSSEVYGDVADPPITEDTPLG-PLSPYAAAKLAAERLVEAYARAYGLRAVILRLFNV 168
Query: 262 YGPW---GRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318
YGP R I+ GK I + DG + RDF Y+DD+ + L L+
Sbjct: 169 YGPGNPDPFVTHVIPALIRRILEGKPILLL--GDG-TQRRDFLYVDDVARAILLALEH-- 223
Query: 319 KSTGSGGKKKGPAEFRIFNLG 339
P I+N+G
Sbjct: 224 -----------PDGGEIYNIG 233
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 3e-49
Identities = 100/354 (28%), Positives = 152/354 (42%), Gaps = 61/354 (17%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
VLVTG AG++GSH L K G V+ LDN +N ++ +L K F D+
Sbjct: 2 KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLK-------LQFKFYE-GDL 53
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D++LL +F V+H AA V ++QNP Y ++N+ G +NL+E + +
Sbjct: 54 LDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKK- 112
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
+++S+++VYG P SE P + Y +K E I + LR+F
Sbjct: 113 FIFSSTAAVYGEPTTSPISETSPLA-PINPYGRSKLMSEEILRDAAKANPFKVVILRYFN 171
Query: 261 VYG--PWGR------------PDMAYFFFTRDIIRGKR--ITV----YEAPDGASVARDF 300
V G P G P A + GKR + + Y+ DG + RD+
Sbjct: 172 VAGACPDGTLGQRYPGATLLIPVAA------EAALGKRDKLFIFGDDYDTKDGTCI-RDY 224
Query: 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK 360
++DD+ + L K+ + IFNLG+ S+LE I K
Sbjct: 225 IHVDDLADAHVLALKYLKEGGSN----------NIFNLGS------GNGFSVLEVIEAAK 268
Query: 361 AETKVLPLP------RNGDVQFTHANISLAQRELGYMPT-TDLETGLKKFVRWY 407
T +P R GD A+ S A++ LG+ PT DLE +K W+
Sbjct: 269 KVTGR-DIPVEIAPRRAGDPAILVADSSKARQILGWQPTYDDLEDIIKDAWDWH 321
|
Length = 329 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 1e-46
Identities = 106/328 (32%), Positives = 158/328 (48%), Gaps = 33/328 (10%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
VL+ G GF+GSH+ AL + G V D YE L GV I D
Sbjct: 2 VLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPYE----------LPLGGVDYIKGDYE 51
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
+++ L+ +V V+HLA+ + +NP +++N+A V LLE C ++ I
Sbjct: 52 NRADLESA--LVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKII 109
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
+S +VYGV +++P SE D T P S Y +K A E Y ++YGL T LR
Sbjct: 110 FASSGGTVYGVPEQLPISESDPTL-PISSYGISKLAIEKYLRLYQYLYGLDYTVLRISNP 168
Query: 262 YGPWGRPDMAYFF---FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318
YGP RPD I+RG+ I ++ DG S+ RD+ YIDD+V+ +A L
Sbjct: 169 YGPGQRPDGKQGVIPIALNKILRGEPIEIWG--DGESI-RDYIYIDDLVEALMALL---- 221
Query: 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTH 378
+ KG +FN+G+ ++ L++ +EK+ + P R DV
Sbjct: 222 -------RSKG--LEEVFNIGSGIGYSLAELIAEIEKVTGRSVQVIYTP-ARTTDVPKIV 271
Query: 379 ANISLAQRELGYMPTTDLETGLKKFVRW 406
+IS A+ ELG+ P LE GL+K +W
Sbjct: 272 LDISRARAELGWSPKISLEDGLEKTWQW 299
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-42
Identities = 100/341 (29%), Positives = 149/341 (43%), Gaps = 34/341 (9%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+LVTG AG++GSH L + G V+ LDN +N +L V ++ D+
Sbjct: 2 ILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALP----RGERITPVTFVEGDLR 57
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D+ LLD++F V+H A V ++Q P Y +N+ G +NLLE + + +
Sbjct: 58 DRELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKK-F 116
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI-YGLSITGLRFFT 260
+++SS++VYG +P SE D P + Y +K E I S LR+F
Sbjct: 117 IFSSSAAVYGEPSSIPISE-DSPLGPINPYGRSKLMSEQILRDLQKADPDWSYVILRYFN 175
Query: 261 VYG--PWGRPDMAYFFFTR------DIIRGKRI------TVYEAPDGASVARDFTYIDDI 306
V G P G T + GKR T Y PDG V RD+ ++ D+
Sbjct: 176 VAGAHPSGDIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCV-RDYIHVMDL 234
Query: 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVL 366
LA L+ GS ++NLG V ++ +K+ ++
Sbjct: 235 ADAHLAALEYLLNGGGS----------HVYNLGYGQGFSVLEVIEAFKKVSGKDFPVELA 284
Query: 367 PLPRNGDVQFTHANISLAQRELGYMPT-TDLETGLKKFVRW 406
P R GD A+ S +RELG+ P TDLE +K RW
Sbjct: 285 P-RRPGDPASLVADASKIRRELGWQPKYTDLEEIIKDAWRW 324
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 8e-39
Identities = 96/345 (27%), Positives = 150/345 (43%), Gaps = 50/345 (14%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG---VFVID 137
VLVTGA GF+GSH++ L + G V LD +N+ GLL+ A I
Sbjct: 1 NVLVTGADGFIGSHLTERLLREGHEVRALDIYNS-------FNSWGLLDNAVHDRFHFIS 53
Query: 138 ADINDKSLLDKIFNVVAFTH-VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD 196
D+ D S ++ + V V HLAA + Y+ P SYVE+N+ G +N+LE
Sbjct: 54 GDVRDASEVEYL---VKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLY 110
Query: 197 PQPAIVWASSSSVYGVNKKVPFSEKD---RTDQPASLYAATKKAGEAIAHAYNHIYGLSI 253
+ +V S+S VYG + VP E ++P S Y+A+K+ + +A++Y +GL +
Sbjct: 111 RKR-VVHTSTSEVYGTAQDVPIDEDHPLLYINKPRSPYSASKQGADRLAYSYGRSFGLPV 169
Query: 254 TGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAP------DGASVARDFTYIDDIV 307
T +R F YGP R R +I DG+ RDF ++ D
Sbjct: 170 TIIRPFNTYGP--RQSA------RAVIPTIISQRAIGQRLINLGDGSPT-RDFNFVKDTA 220
Query: 308 KGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPV-SRLVSLLEKILKVKAETKVL 366
+G + LD A I N G+ + + + V L+ + L
Sbjct: 221 RGFIDILDA------------IEAVGEIINNGSGEEISIGNPAVELIVEELGEMVLIVYD 268
Query: 367 PLPRNG----DVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
+V+ +I A+R LG+ P L GL++ + W+
Sbjct: 269 DHREYRPGYSEVERRIPDIRKAKRLLGWEPKYSLRDGLRETIEWF 313
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 3e-38
Identities = 91/356 (25%), Positives = 146/356 (41%), Gaps = 49/356 (13%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY----ETSLKKARKGLLERAGVFVI 136
VL+TG AGF+GS+++ K+G V+G DN LK R+ GV +
Sbjct: 2 RVLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSFGNLAWLKANREDG----GVRFV 57
Query: 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD 196
DI +++ L+ +F + ++H AAQ V + +P E+N G +N+LE +
Sbjct: 58 HGDIRNRNDLEDLFEDIDL--IIHTAAQPSVTTSASSPRLDFETNALGTLNVLEAARQHA 115
Query: 197 PQPAIVWASSSSVYGVN-KKVP-------------------FSEKDRTDQPASLYAATKK 236
P ++ S++ VYG +P SE D SLY A+K
Sbjct: 116 PNAPFIFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAGISESFPLDFSHSLYGASKG 175
Query: 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPW--GRPDMAYF-FFTRDIIRGKRITVYEAPDG 293
A + Y I+GL R + GP G D + +F + + GK +T++ G
Sbjct: 176 AADQYVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQGWVAYFLKCAVTGKPLTIFG--YG 233
Query: 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVS--RLVS 351
RD + D+V L + G +FN+G VS L++
Sbjct: 234 GKQVRDVLHSADLVNLYLRQFQNPDRRKG-----------EVFNIGGGRENSVSLLELIA 282
Query: 352 LLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
L E+I K E+ R GD + ++I + + G+ P D L + W
Sbjct: 283 LCEEITGRKMESYKDE-NRPGDQIWYISDIRKIKEKPGWKPERDPREILAEIYAWI 337
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 5e-36
Identities = 97/335 (28%), Positives = 155/335 (46%), Gaps = 40/335 (11%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+L+TG AGF+GSH+ L + G V+ +DNF T K+ + L+ I D+
Sbjct: 2 RILITGGAGFLGSHLCDRLLEDGHEVICVDNFF----TGRKRNIEHLIGHPNFEFIRHDV 57
Query: 141 NDKSLL--DKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
+ L D+I+ HLA A + NP +++N+ G +N+L K +
Sbjct: 58 TEPLYLEVDQIY---------HLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGAR 108
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDR----TDQPASLYAATKKAGEAIAHAYNHIYGLSIT 254
++ AS+S VYG + P E P S Y K+ E + AY+ +G+ +
Sbjct: 109 --VLLASTSEVYGDPEVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGVDVR 166
Query: 255 GLRFFTVYGPWGRPDMAYFF--FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLA 312
R F YGP P+ F +RG+ ITVY DG + R F Y+ D+V+G +
Sbjct: 167 IARIFNTYGPRMHPNDGRVVSNFIVQALRGEPITVYG--DG-TQTRSFQYVSDLVEGLIR 223
Query: 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNG 372
+++ GP NLGN + L L++K+ K+E LPLP +
Sbjct: 224 LMNSDYFG--------GP-----VNLGNPEEFTILELAELVKKLTGSKSEIVFLPLPED- 269
Query: 373 DVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
D + +IS A+ LG+ P LE GL++ + ++
Sbjct: 270 DPKRRRPDISKAKELLGWEPKVPLEEGLRRTIEYF 304
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-32
Identities = 95/349 (27%), Positives = 155/349 (44%), Gaps = 56/349 (16%)
Query: 82 VLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
++VTG AGF+GS++ AL +RG +L +DN L+ K L A + VI I
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDN--------LRDGHK-FLNLADL-VIADYI 50
Query: 141 NDKSLLDKIFNVVA--FTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCK 193
+ + LD++ + H A + Y M+N N LL+ C
Sbjct: 51 DKEDFLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMMEN-------NYQYSKRLLDWC- 102
Query: 194 SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLS- 252
++ ++ASS++ YG + + F E ++P ++Y +K + LS
Sbjct: 103 -AEKGIPFIYASSAATYG-DGEAGFREGRELERPLNVYGYSKFLFDQYVRRRVLPEALSA 160
Query: 253 -ITGLRFFTVYGPW----GR-PDMAYFFFTRDIIRGKRITVYEAPDG---ASVARDFTYI 303
+ GLR+F VYGP G+ +A+ F + I G + ++++ +G RDF Y+
Sbjct: 161 QVVGLRYFNVYGPREYHKGKMASVAFHLFNQ-IKAGGNVKLFKSSEGFKDGEQLRDFVYV 219
Query: 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAET 363
D+V L L+ SG IFNLG + L + K L +
Sbjct: 220 KDVVDVNLWLLENGV----SG----------IFNLGTGRARSFNDLADAVFKALGKDEKI 265
Query: 364 KVLPLPRN--GDVQ-FTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
+ +P+P G Q FT A+I+ + Y P T LE G+K +V+W L+
Sbjct: 266 EYIPMPEALRGRYQYFTQADITKLRAAGYYGPFTTLEEGVKDYVQWLLA 314
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 4e-32
Identities = 86/351 (24%), Positives = 137/351 (39%), Gaps = 59/351 (16%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLD----NFNNYYETSLKKARKGLLERAGVFVI 136
L+TG G GS+++ L ++G V G+ +FN L + + +
Sbjct: 1 RALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTDRIDHLYINKDRI------TLH 54
Query: 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD 196
D+ D S L + V + HLAAQ+ V+ + +P E N G +NLLE +
Sbjct: 55 YGDLTDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILG 114
Query: 197 PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGL-SITG 255
ASSS YG +++P SE +P S YA +K + I Y YGL ++ G
Sbjct: 115 LDARFYQASSSEEYGKVQELPQSE-TTPFRPRSPYAVSKLYADWITRNYREAYGLFAVNG 173
Query: 256 LRFFTVYGPWGRPDMAYFFFTRDIIR-------GKRITVY----EAPDGASVARDFTYID 304
R F GP R + F TR I R G + + +A RD+
Sbjct: 174 -RLFNHEGP-RRGET---FVTRKITRQVARIKAGLQPVLKLGNLDA------KRDWGDAR 222
Query: 305 DIVKG-CLAGLDTAKKSTGSGGKKKGPAEFRIFNL--GNTTPVP----VSRLVSLLEKIL 357
D V+ L G + + G T V ++ S L +
Sbjct: 223 DYVEAYWLLLQ------QGEPDD---------YVIATGETHSVREFVELAFEESGLTGDI 267
Query: 358 KVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYL 408
+V+ + + R +V + S A+ ELG+ P E +++ + L
Sbjct: 268 EVEIDPRYF---RPTEVDLLLGDPSKAREELGWKPEVSFEELVREMLDADL 315
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 4e-32
Identities = 94/339 (27%), Positives = 149/339 (43%), Gaps = 32/339 (9%)
Query: 81 TVLVTGAAGFVGSH-VSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
+LVTG AGF+GS+ V L K D V+ LD Y + + + +
Sbjct: 2 KILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLT--Y-AGNLENLADVEDSPRYRFVQG 58
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
DI D+ L+D++F V+H AA++ V ++ P ++++N+ G LLE + +
Sbjct: 59 DICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGK 118
Query: 199 PAIVWASSSSVYG--VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGL 256
S+ VYG F+E + P+S Y+A+K A + + AY YGL T
Sbjct: 119 FRFHHISTDEVYGDLGLDDDAFTETTPYN-PSSPYSASKAASDLLVRAYVRTYGLPATIT 177
Query: 257 RFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316
R YGP+ P+ + + GK + VY DG + RD+ Y++D + L
Sbjct: 178 RCSNNYGPYQFPEKLIPLMIINALLGKPLPVYG--DGLQI-RDWLYVEDHCRAIDLVLTK 234
Query: 317 AKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL-----PRN 371
K G +N+G +V + ++L K + L R
Sbjct: 235 GK----IG---------ETYNIGGGNERTNLEVVKTICELLG-KDKPDYRDLITFVEDRP 280
Query: 372 G-DVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
G D ++ + S +RELG+ P ETGL+K V WYL
Sbjct: 281 GHDRRYA-IDASKIKRELGWRPQETFETGLRKTVDWYLD 318
|
Length = 340 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 6e-32
Identities = 97/340 (28%), Positives = 156/340 (45%), Gaps = 40/340 (11%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDG--VLGLD------NFNNYYETSLKKARKGLLERAG 132
+LVTG AGF+GS+ L + ++ LD N N L+ R
Sbjct: 2 KILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLEN-----LEDVSSS--PR-- 52
Query: 133 VFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETC 192
+ DI D L+D++F V+H AA++ V ++ +P ++ +N+ G LLE
Sbjct: 53 YRFVKGDICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRTNVLGTYTLLEAA 112
Query: 193 KSSDPQPAIVWASSSSVYG-VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGL 251
+ + V S+ VYG + F+E P S Y+A+K A + + AY+ YGL
Sbjct: 113 RKYGVK-RFVHISTDEVYGDLLDDGEFTETSPLA-PTSPYSASKAAADLLVRAYHRTYGL 170
Query: 252 SITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311
+ R YGP+ P+ F + + GK + +Y DG +V RD+ Y++D +
Sbjct: 171 PVVITRCSNNYGPYQFPEKLIPLFILNALDGKPLPIYG--DGLNV-RDWLYVEDHARAIE 227
Query: 312 AGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP-R 370
L +KG I+N+G + LV L+ ++L K E+ + + R
Sbjct: 228 LVL------------EKGR-VGEIYNIGGGNELTNLELVKLILELLG-KDESLITYVKDR 273
Query: 371 NG-DVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
G D ++ + S +RELG+ P E GL+K VRWYL
Sbjct: 274 PGHDRRYA-IDSSKIRRELGWRPKVSFEEGLRKTVRWYLE 312
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 9e-32
Identities = 93/327 (28%), Positives = 146/327 (44%), Gaps = 29/327 (8%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVID-ADI 140
+LVTG AGF+GSH+ L + G+ V+ +DN ++ +++ + + D D
Sbjct: 2 ILVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSSGRRENIEPEFEN--KAFRFVKRDLLDT 59
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
DK V HLAA VR +P+ +E N+ N+LE +++ +
Sbjct: 60 ADKVAKKDGDTVF------HLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVK-R 112
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
IV+ASSS+VYG K +P E D P S+Y A+K A EA+ AY H++G RF
Sbjct: 113 IVFASSSTVYGEAKVIPTPE-DYPPLPISVYGASKLAAEALISAYAHLFGFQAWIFRFAN 171
Query: 261 VYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKS 320
+ GP + Y F + + V DG + + Y+ D V L +
Sbjct: 172 IVGPRSTHGVIYDFINKLKRNPNELEVLG--DG-RQRKSYLYVSDCVDAMLLAWE----- 223
Query: 321 TGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN--GDVQFTH 378
K IFNLGN + V+ + ++ + L +K K R GDV +
Sbjct: 224 -------KSTEGVNIFNLGNDDTISVNEIAEIVIEELGLKPRFKYSGGDRGWKGDVPYMR 276
Query: 379 ANISLAQRELGYMPTTDLETGLKKFVR 405
+I + LG+ P + E ++K VR
Sbjct: 277 LDIEKL-KALGWKPRYNSEEAVRKTVR 302
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 5e-31
Identities = 102/339 (30%), Positives = 155/339 (45%), Gaps = 53/339 (15%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARK--GLLERAGVFVIDA 138
T+LVTG AG++GSH L L G V+ +DN +N E +L++ ++ G L VF
Sbjct: 7 TILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVF-HKV 65
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLET-----CK 193
D+ DK L+K+F F V+H A V ++ P Y ++N+ G +NLLE CK
Sbjct: 66 DLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK 125
Query: 194 SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYG--- 250
+V++SS++VYG ++VP +E+ + Y TK E I I+
Sbjct: 126 K------LVFSSSATVYGQPEEVPCTEEFPL-SATNPYGRTKLFIEEIC---RDIHASDP 175
Query: 251 -LSITGLRFFTVYG----------PWGRPD--MAYFFFTRDIIRGKR--ITV----YEAP 291
I LR+F G P G P+ M Y + + G+R +TV Y
Sbjct: 176 EWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPY---VQQVAVGRRPELTVFGNDYPTK 232
Query: 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVS 351
DG V RD+ ++ D+ G +A L G +NLG V +V+
Sbjct: 233 DGTGV-RDYIHVMDLADGHIAALRKLFTDPDIG--------CEAYNLGTGKGTSVLEMVA 283
Query: 352 LLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGY 390
EK K K+ P R GD + +A+ A++ELG+
Sbjct: 284 AFEKASGKKIPLKLAP-RRPGDAEEVYASTEKAEKELGW 321
|
Length = 352 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 7e-31
Identities = 97/344 (28%), Positives = 169/344 (49%), Gaps = 24/344 (6%)
Query: 83 LVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLER--AGVFVIDADI 140
L+TG AGF+GS + L V+GLDNF+ Y+ +L R + E + I DI
Sbjct: 19 LITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDI 78
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
+ K V + V+H AA V ++++P + +NI GF+N+L + + +
Sbjct: 79 RKFTDCQKACKNVDY--VLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-S 135
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
+A+SSS YG + +P E +R +P S YA TK E A + Y + GLR+F
Sbjct: 136 FTYAASSSTYGDHPDLPKIE-ERIGRPLSPYAVTKYVNELYADVFARSYEFNAIGLRYFN 194
Query: 261 VYGPWGRPDMAYFFFTRDIIRG--KRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318
V+G P+ AY I K +Y DG S +RDF YI+++++ L T
Sbjct: 195 VFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDG-STSRDFCYIENVIQANLLSATTND 253
Query: 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKV--KAETKVLPLP---RNGD 373
++ + +++N+ ++ L L+ L + +++ P+ R+GD
Sbjct: 254 LASKN----------KVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGD 303
Query: 374 VQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSASAS 417
V+ + A+I+ + L Y P D++ GLK+ ++WY+ +++ +S
Sbjct: 304 VKHSQADITKIKTFLSYEPEFDIKEGLKQTLKWYIDKHSTLYSS 347
|
Length = 348 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-30
Identities = 94/352 (26%), Positives = 134/352 (38%), Gaps = 64/352 (18%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLL----ERAGVFV 135
LVTGA GF+GSH++ LK G V G D + + T + L E
Sbjct: 1 QRALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDDEFHLVDLREMENCLK 60
Query: 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQ-AGVRYAMQNPNSYVESNIAGFVNLLETCKS 194
++ HV HLAA G+ Y N + +N N+LE +
Sbjct: 61 ATEGVD---------------HVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARI 105
Query: 195 SDPQPAIVWASSSSVYGVNKK-----VPFSEKDRT-DQPASLYAATKKAGEAIAHAYNHI 248
+ + ++ASS+ VY K+ V E+D +P Y K A E + YN
Sbjct: 106 NGVE-RFLFASSACVYPEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNED 164
Query: 249 YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRIT-----VYEAPDGASV------- 296
YG+ +RF +YGP G T D R K V A DG
Sbjct: 165 YGIETRIVRFHNIYGPRG---------TWDGGREKAPAAMCRKVATAKDGDRFEIWGDGL 215
Query: 297 -ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEK 355
R FTYIDD V+G + G P NLG+ V ++ L ++
Sbjct: 216 QTRSFTYIDDCVEGLRR---LMESDFG------EP-----VNLGSDEMVSMNELAEMVLS 261
Query: 356 ILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
E P V+ +++ +L + ELG+ P T LE GL+ W
Sbjct: 262 FSGKPLEIIHH-TPGPQGVRGRNSDNTLLKEELGWEPNTPLEEGLRITYFWI 312
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-30
Identities = 92/331 (27%), Positives = 151/331 (45%), Gaps = 51/331 (15%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN--NYY---ETSLKKARKGLLERAGVFVI 136
VLVTGA GF+GSH+ AL ++G V +N N + +TS + + + V+
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEVKDK------IEVV 54
Query: 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD 196
DI D + K + V HLAA + Y+ P+SYV++N+ G +N+L+ +
Sbjct: 55 TGDIRDPDSVRKA--MKGCDVVFHLAALIAIPYSYIAPDSYVDTNVTGTLNVLQAARDLG 112
Query: 197 PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGL 256
+ +V S+S VYG + VP EK Q S Y+A+K + +A ++ + +T +
Sbjct: 113 VE-KVVHTSTSEVYGTAQYVPIDEKHPL-QGQSPYSASKIGADQLALSFYRSFNTPVTII 170
Query: 257 RFFTVYGPWGRPDMAYFFFTRDII--------RGKRITVYEAPDGA-SVARDFTYIDDIV 307
R F YGP R R +I GKR G+ S RDF Y+ D V
Sbjct: 171 RPFNTYGP--RQS------ARAVIPTIITQIASGKR----RIKLGSLSPTRDFNYVTDTV 218
Query: 308 KGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKIL--KVKAETKV 365
+G +A + + K+ G + N+G+ + + V L+ +I+ +V+ ET
Sbjct: 219 RGFIAIAE-SDKTVG-----------EVINIGSNFEISIGDTVKLIAEIMGSEVEIETDE 266
Query: 366 LPL-PRNGDVQFTHANISLAQRELGYMPTTD 395
L P +V+ + S + G+ P
Sbjct: 267 ERLRPEKSEVERLWCDNSKIKELTGWQPKYS 297
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-28
Identities = 92/332 (27%), Positives = 149/332 (44%), Gaps = 25/332 (7%)
Query: 81 TVLVTGAAGFVGSH-VSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
+LVTG AGF+GS+ V L + D V+ LD Y +L+ FV
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLT--YAGNLENLADLEDNPRYRFV-KG 57
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
DI D+ L+ ++F V+H AA++ V ++ P +++E+N+ G LLE + +
Sbjct: 58 DIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHE 117
Query: 199 PAIVWASSSSVYG-VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLR 257
S+ VYG + K F+E P+S Y+A+K A + + AY+ YGL R
Sbjct: 118 FRFHHISTDEVYGDLEKGDAFTETTPL-APSSPYSASKAASDHLVRAYHRTYGLPALITR 176
Query: 258 FFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317
YGP+ P+ + + GK + VY DG V RD+ Y++D + L+
Sbjct: 177 CSNNYGPYQFPEKLIPLMITNALAGKPLPVYG--DGQQV-RDWLYVEDHCRAIYLVLEKG 233
Query: 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNG-DVQF 376
+ +N+G +V + ++L + R G D ++
Sbjct: 234 RVG-------------ETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRY 280
Query: 377 THANISLAQRELGYMPTTDLETGLKKFVRWYL 408
+ S +RELG+ P E GL+K V+WYL
Sbjct: 281 A-IDASKIKRELGWAPKYTFEEGLRKTVQWYL 311
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 7e-28
Identities = 91/344 (26%), Positives = 147/344 (42%), Gaps = 42/344 (12%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
++VTG AGF+GS++ AL +RG +L +DN K D
Sbjct: 1 MIIVTGGAGFIGSNLVKALNERGITDILVVDNL--------SNGEKFKNLVGLKIADYID 52
Query: 140 IND-KSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
+D K + K + H A + + +++N LL C + +
Sbjct: 53 KDDFKDWVRKGDENFKIEAIFHQGACSDT--TETDGKYMMDNNYQYTKELLHYCL--EKK 108
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQ--PASLYAATKKAGEAIAHAYNHIYGLSITGL 256
++ASS++VYG N + F+E T P ++Y +K + A + + GL
Sbjct: 109 IRFIYASSAAVYG-NGSLGFAEDIETPNLRPLNVYGYSKLLFDQWARRHGKEVLSQVVGL 167
Query: 257 RFFTVYGP--WGRPDMA--YFFFTRDIIRGKRITVYEAPDGASVA---RDFTYIDDIVKG 309
R+F VYGP + + MA F I G+++ ++++ DG + RDF Y+ D+VK
Sbjct: 168 RYFNVYGPREYHKGRMASVVFHLFNQIKAGEKVKLFKSSDGYADGEQLRDFVYVKDVVKV 227
Query: 310 CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP 369
L L+ S IFN+G + L S K L + + + + P
Sbjct: 228 NLFFLENPSVSG-------------IFNVGTGRARSFNDLASATFKALGKEVKIEYIDFP 274
Query: 370 RN--GDVQ-FTHANISLAQRELGYMPT-TDLETGLKKFVRWYLS 409
+ G Q FT A+IS R GY LE G+K +V+ YL+
Sbjct: 275 EDLRGKYQSFTEADIS-KLRAAGYTKEFHSLEEGVKDYVKNYLA 317
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 91/362 (25%), Positives = 138/362 (38%), Gaps = 58/362 (16%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLG--LDNFN--NYYETSLKKARKGLLERAGVF 134
G VLVTG GF GS +SL L++ G V+G LD N +E L+
Sbjct: 4 GKRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLFEL-------ANLDNKISS 56
Query: 135 VIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKS 194
DI D + L + V HLAAQ VR + ++P E+N+ G VNLLE +
Sbjct: 57 TR-GDIRDLNALREAIREYEPEIVFHLAAQPLVRLSYKDPVETFETNVMGTVNLLEAIRE 115
Query: 195 SDPQPAIVWASSSSVYGVNKKV-PFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---- 249
+ A+V +S Y + + E D Y+++K E I +Y + +
Sbjct: 116 TGSVKAVVNVTSDKCYENKEWGWGYREND-PLGGHDPYSSSKGCAELIISSYRNSFFNPE 174
Query: 250 -----GLSITGLRFFTVYG----PWGR--PDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298
G++I R V G R PD R G+R+ + A R
Sbjct: 175 NYGKHGIAIASARAGNVIGGGDWAEDRIVPDC-----IRAFEAGERVIIRN--PNAI--R 225
Query: 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP--VPVSRLVSLLEKI 356
+ ++ + L+G + G++ A +N G V V LV E +
Sbjct: 226 PWQHVLE----PLSGYLLLAEKLYERGEEYAEA----WNFGPDDEDAVTVLELV---EAM 274
Query: 357 LKVKAETKVLPLPRNGDVQFTHAN-----ISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
+ E AN S A+ LG+ P +LE L+ V WY +
Sbjct: 275 ARYWGEDAR-WDLDGNS-HPHEANLLKLDCSKAKTMLGWRPRWNLEETLEFTVAWYKEWL 332
Query: 412 NS 413
+
Sbjct: 333 SG 334
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-25
Identities = 96/352 (27%), Positives = 157/352 (44%), Gaps = 49/352 (13%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+ VLVTG +G++GSH + L + G V+ LDN N + S+ + L + FV + D
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNS-KRSVLPVIERLGGKHPTFV-EGD 58
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
I +++LL +I + A V+H A V ++Q P Y ++N+ G + L+ ++++ +
Sbjct: 59 IRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSITGLRF 258
++++SS++VYG K+P+ E T P S Y +K E I SI LR+
Sbjct: 118 NLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 259 FTVYG----------PWGRPD--MAYFFFTRDIIRGKRITV------YEAPDGASVARDF 300
F G P G P+ M Y + G+R ++ Y DG V RD+
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYI---AQVAVGRRDSLAIFGNDYPTEDGTGV-RDY 233
Query: 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK 360
++ D+ G +A ++ G I+NLG V +V+ K
Sbjct: 234 IHVMDLADGHVAAMEKLANKPG----------VHIYNLGAGVGSSVLDVVNAFS-----K 278
Query: 361 AETKVLPLP------RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
A K P+ R GD+ A+ S A REL + T L+ + W
Sbjct: 279 ACGK--PVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
|
Length = 338 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 6e-20
Identities = 78/334 (23%), Positives = 139/334 (41%), Gaps = 43/334 (12%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
VL+TG AG +GSH+ L +RG V+ +DNF R+ L + + V++ I
Sbjct: 3 VLITGGAGQIGSHLIEHLLERGHQVVVIDNFAT-------GRREHLPDHPNLTVVEGSIA 55
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVE---SNIAGFVNLLETCKSSDPQ 198
DK+L+DK+F V+H AA A ++P+ + E +N+ G N+++ K + +
Sbjct: 56 DKALVDKLFGDFKPDAVVHTAA------AYKDPDDWYEDTLTNVVGGANVVQAAKKAGVK 109
Query: 199 PAIVWASSSSVYGVNKKV-PFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLR 257
+++ ++ YG+ P P S YA +K AGE Y + G+ R
Sbjct: 110 -RLIYFQTALCYGLKPMQQPIRLDHPRAPPGSSYAISKTAGE----YYLELSGVDFVTFR 164
Query: 258 FFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317
V GP F+ R + GK+ V + RDF ++ D+ + LD
Sbjct: 165 LANVTGPRNVIGPLPTFYQR-LKAGKKCFVTDT------RRDFVFVKDLARVVDKALD-- 215
Query: 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFT 377
G + G ++ + V + L + + L + +V + D +
Sbjct: 216 ------GIRGHG-----AYHFSSGEDVSIKELFDAVVEALDLPLRPEVEVVELGPDDVPS 264
Query: 378 HA-NISLAQRELGYMPTTDLETGLKKFVRWYLSY 410
+ S ++ G+ T L + + WY +
Sbjct: 265 ILLDPSRTFQDFGWKEFTPLSETVSAALAWYDKH 298
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 88.5 bits (219), Expect = 4e-19
Identities = 101/389 (25%), Positives = 153/389 (39%), Gaps = 58/389 (14%)
Query: 43 FFLISPS--------PSATFRRHSSGGPQWEKQIVKSTRPRSTRG-------------LT 81
FF++ PS ++ R S + G L
Sbjct: 63 FFILQPSLSRLGPAESTSLITRSVSIAVTDSPPSSSTFNSSGGGGRTGRVPVGIGRKRLR 122
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
++VTG AGFVGSH+ L RGD V+ +DNF T K+ L +I D+
Sbjct: 123 IVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFF----TGRKENLVHLFGNPRFELIRHDVV 178
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
+ LL+ + HLA A + NP +++N+ G +N+L K +
Sbjct: 179 EPILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAR--F 229
Query: 202 VWASSSSVYGVNKKVPFSEKDRTD-QPA---SLYAATKKAGEAIAHAYNHIYGLSITGLR 257
+ S+S VYG + P E + P S Y K+ E +A Y+ G+ + R
Sbjct: 230 LLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIAR 289
Query: 258 FFTVYGPWGRPDMAYFF--FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315
F YGP D F IR + +TVY DG R F Y+ D+V G +A ++
Sbjct: 290 IFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYG--DGKQ-TRSFQYVSDLVDGLVALME 346
Query: 316 TAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQ 375
G+ GP FNLGN + L ++++ + A + P + D
Sbjct: 347 ---------GEHVGP-----FNLGNPGEFTMLELAEVVKETIDSSATIEFKPNTAD-DPH 391
Query: 376 FTHANISLAQRELGYMPTTDLETGLKKFV 404
+IS A+ L + P L GL V
Sbjct: 392 KRKPDISKAKELLNWEPKISLREGLPLMV 420
|
Length = 436 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (214), Expect = 9e-19
Identities = 93/351 (26%), Positives = 161/351 (45%), Gaps = 42/351 (11%)
Query: 81 TVLVTGAAGFVGSHV-SLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVID-A 138
+L+TG AGF+GS + + + D V+ +D Y + A ER F +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLT-YAGNLMSLAPVAQSER---FAFEKV 58
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKS---- 194
DI D++ L ++F VMHLAA++ V ++ P +++E+NI G LLE ++
Sbjct: 59 DICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNA 118
Query: 195 --SDPQPAIVW--ASSSSVYG-VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY 249
D + A + S+ VYG ++ F + P+S Y+A+K + + + A+ Y
Sbjct: 119 LTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 250 GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKG 309
GL YGP+ P+ + + GK + VY +G + RD+ Y++D +
Sbjct: 179 GLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYG--NGQQI-RDWLYVEDHARA 235
Query: 310 --CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE----- 362
C+A ++ GG + NL V + LLE++ K +
Sbjct: 236 LYCVATTGKVGETYNIGGHNERK------NL-----DVVETICELLEELAPNKPQGVAHY 284
Query: 363 ----TKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
T V P + D+++ + S RELG++P E+G++K V+WYL+
Sbjct: 285 RDLITFVADRPGH-DLRYA-IDASKIARELGWLPQETFESGMRKTVQWYLA 333
|
Length = 355 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 1e-18
Identities = 80/342 (23%), Positives = 131/342 (38%), Gaps = 56/342 (16%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+LVTG G VGS + L +RG YE + + K + D+
Sbjct: 1 KILVTGHRGLVGSAIVRVLARRG------------YENVVFRTSK-----------ELDL 37
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYA-MQNPNSYVESNIAGFVNLLETCKSSDPQP 199
D+ + F +V+HLAA+ G A M P ++ N+ N++ +
Sbjct: 38 TDQEAVRAFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGVK- 96
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQP--ASL--YAATKKAGEAIAHAYNHIYGLSITG 255
+V+ SS +Y P E D P + YA K+AG + AY YG
Sbjct: 97 KLVFLGSSCIYPDLAPQPIDESDLLTGPPEPTNEGYAIAKRAGLKLCEAYRKQYGCDYIS 156
Query: 256 LRFFTVYGPW--GRPDMAYFFFT--RDIIRGKR-----ITVYEAPDGASVARDFTYIDDI 306
+ +YGP P+ ++ R K +TV+ G + R+F Y DD+
Sbjct: 157 VMPTNLYGPHDNFDPENSHVIPALIRKFHEAKLRGGKEVTVWG--SG-TPRREFLYSDDL 213
Query: 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVL 366
+ + L + E I N+G+ + + L + +++ K E
Sbjct: 214 ARAIVFLL-------------ENYDEPIIVNVGSGVEISIRELAEAIAEVVGFKGEIVFD 260
Query: 367 PLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYL 408
+G + L R LG+ P T LE G+++ WYL
Sbjct: 261 TSKPDGQPRKLLDVSKL--RALGWFPFTPLEQGIRETYEWYL 300
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 4e-17
Identities = 79/358 (22%), Positives = 128/358 (35%), Gaps = 52/358 (14%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARK-GLLERAGVFVIDAD 139
L+TG G GS+++ L ++G V G+ ++ + T + L + + D
Sbjct: 4 VALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGD 63
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ D S L +I V + +LAAQ+ V + + P + + G + LLE + +
Sbjct: 64 LTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKK 123
Query: 200 A-IVWASSSSVYGVNKKVPFSEKDRTD-QPASLYAATKKAGEAIAHAYNHIYGLSITGLR 257
AS+S +YG+ +++P E T P S YA K I Y YGL
Sbjct: 124 TRFYQASTSELYGLVQEIPQKET--TPFYPRSPYAVAKLYAYWITVNYRESYGLFACNGI 181
Query: 258 FFTVYGPWGRPDMAYFFFTRDIIR-------GKRITVYEAPDGASVARDFTYIDDIVKGC 310
F P R + F TR I R G + +Y A RD+ + D V+
Sbjct: 182 LFNHESP-LRGET---FVTRKITRAVARIKLGLQDKLYLGNLDAK--RDWGHAKDYVEAM 235
Query: 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSL--------LEKILKVKAE 362
L + + + V V L LE E
Sbjct: 236 WLMLQQEEPDD--------------YVIATGETHSVREFVELAFEMVGIDLEWEGTGVDE 281
Query: 363 TKVLPLP------------RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYL 408
V R +V + + A+ +LG+ P LE +++ V L
Sbjct: 282 KGVDAKTGKIIVEIDPRYFRPAEVDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADL 339
|
Length = 345 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 9e-17
Identities = 93/359 (25%), Positives = 153/359 (42%), Gaps = 52/359 (14%)
Query: 80 LTVLVTGAAGFVGSH-VSLALKKRGDGVLGLDNF----NNYYETSLKKARKGLLERAGVF 134
+ +LVTG AGF+GS V + D V+ +D N + + + + E A
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHA--- 57
Query: 135 VIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCK- 193
DI D++ LD+IF VMHLAA++ V ++ P +++E+NI G LLE +
Sbjct: 58 ----DICDRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARN 113
Query: 194 -----SSDPQPAIVW--ASSSSVYG---------VNKKVPFSEKDRTDQPASLYAATKKA 237
D + A + S+ VYG ++++P + P+S Y+A+K +
Sbjct: 114 YWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETTAYAPSSPYSASKAS 173
Query: 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297
+ + A+ YGL YGP+ P+ + + GK + +Y D
Sbjct: 174 SDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQ---I 230
Query: 298 RDFTYIDD----IVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLL 353
RD+ Y++D + K G + G +KK NL V + LL
Sbjct: 231 RDWLYVEDHARALYKVVTEGKAGETYNIGGHNEKK--------NLD-----VVLTICDLL 277
Query: 354 EKILKVK---AETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
++I+ E R G + + S RELG+ P E+G++K V WYL+
Sbjct: 278 DEIVPKATSYREQITYVADRPGHDRRYAIDASKISRELGWKPQETFESGIRKTVEWYLA 336
|
Length = 352 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 5e-16
Identities = 92/336 (27%), Positives = 145/336 (43%), Gaps = 41/336 (12%)
Query: 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVID 137
+GL V+VTG AGFVGSH+ L RGD V+ +DNF T K+ +I
Sbjct: 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFF----TGRKENVMHHFSNPNFELIR 173
Query: 138 ADINDKSLL--DKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
D+ + LL D+I+ HLA A + NP +++N+ G +N+L K
Sbjct: 174 HDVVEPILLEVDQIY---------HLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRV 224
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTD-QPA---SLYAATKKAGEAIAHAYNHIYGL 251
+ + S+S VYG + P E + P S Y K+ E + Y+ +
Sbjct: 225 GAR--FLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANV 282
Query: 252 SITGLRFFTVYGPWGRPDMAYFF--FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKG 309
+ R F YGP D F +R + +TVY DG R F ++ D+V+G
Sbjct: 283 EVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYG--DGKQ-TRSFQFVSDLVEG 339
Query: 310 CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP 369
+ ++ G+ GP FNLGN + L ++++ + A+ + P
Sbjct: 340 LMRLME---------GEHVGP-----FNLGNPGEFTMLELAKVVQETIDPNAKIEFRPNT 385
Query: 370 RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVR 405
+ D +I+ A+ LG+ P L GL V+
Sbjct: 386 ED-DPHKRKPDITKAKELLGWEPKVSLRQGLPLMVK 420
|
Length = 442 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 7e-16
Identities = 84/345 (24%), Positives = 129/345 (37%), Gaps = 62/345 (17%)
Query: 82 VLVTGAAGFVGSHVSLALKK--RGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+LVTGAAG +G ++ L R GV GLD R+ V + D
Sbjct: 1 ILVTGAAGGLGRLLARRLAASPRVIGVDGLD------------RRRPPGSPPKVEYVRLD 48
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
I D + +F V+HLA + ++ N+ G N+L+ C ++ P
Sbjct: 49 IRDPA-AADVFREREADAVVHLAF---ILDPPRDGAERHRINVDGTQNVLDACAAA-GVP 103
Query: 200 AIVWASSSSVYGV--NKKVPFSEKDRTD-QPASLYAATKKAGEAIAHAYNHIY-GLSITG 255
+V SS +VYG + P +E P Y+ K E + + + L++T
Sbjct: 104 RVVVTSSVAVYGAHPDNPAPLTEDAPLRGSPEFAYSRDKAEVEQLLAEFRRRHPELNVTV 163
Query: 256 LRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315
LR T+ GP R F +R+ V P G F + DD+ + + +
Sbjct: 164 LRPATILGPGTRNTTRDFL------SPRRLPV---PGGFDPPFQFLHEDDVARALVLAV- 213
Query: 316 TAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVS-----------RLVSLLEKILKVKAETK 364
+TG IFN+ PVP+S L S L L
Sbjct: 214 -RAGATG------------IFNVAGDGPVPLSLVLALLGRRPVPLPSPLPAALAAARRLG 260
Query: 365 VLPLPRNGDVQFTH----ANISLAQRELGYMPTTDLETGLKKFVR 405
+ PLP + F + + A+ ELG+ P L+ F R
Sbjct: 261 LRPLPP-EQLDFLQYPPVMDTTRARVELGWQPKHTSAEVLRDFRR 304
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 3e-15
Identities = 74/355 (20%), Positives = 119/355 (33%), Gaps = 66/355 (18%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+LVTGA GF+GS++ AL +G V L + LL+ V V++ D+
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRAL---------VRSGSDAVLLDGLPVEVVEGDLT 51
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D + L V HLAA ++ +N+ G N+L+ + + +
Sbjct: 52 DAASLAAAMKGCD--RVFHLAAF--TSLWAKDRKELYRTNVEGTRNVLDAALEAGVR-RV 106
Query: 202 VWASSSSVYGVNKKVPFSEKD--RTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
V SS + G E + Y +K E GL + +
Sbjct: 107 VHTSSIAALGGPPDGRIDETTPWNERPFPNDYYRSKLLAELEVLEAAA-EGLDVVIVNPS 165
Query: 260 TVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319
V+GP + D + GK P G + F + D+ +G +A +
Sbjct: 166 AVFGPGDEGPTSTGLDVLDYLNGKLPAY---PPGGT---SFVDVRDVAEGHIAAM----- 214
Query: 320 STGSGGKKKG-PAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP---RNGDVQ 375
+KG E I N + +L L +I VK + +P +
Sbjct: 215 -------EKGRRGERYILGGENLS---FKQLFETLAEITGVKPPRRTIPPWLLKAVAALS 264
Query: 376 FTHANI-----------------------SLAQRELGYMPTTDLETGLKKFVRWY 407
A + A+RELGY LE L+ + W
Sbjct: 265 ELKARLTGKPPLLTPRTARVLRRNYLYSSDKARRELGY-SPRPLEEALRDTLAWL 318
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 4e-15
Identities = 68/239 (28%), Positives = 103/239 (43%), Gaps = 30/239 (12%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDG--VLGLD------NFNNYYETSLKKARKGLLERAGV 133
+L+TGAAGF+ SHV+ L + ++ LD N N + K
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFK-------- 60
Query: 134 FVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCK 193
FV DI L++ + +MH AAQ V + N + ++NI G LLE CK
Sbjct: 61 FV-KGDIASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACK 119
Query: 194 SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL------YAATKKAGEAIAHAYNH 247
+ + S+ VYG + D + AS Y+ATK E + AY
Sbjct: 120 VTGQIRRFIHVSTDEVYGETD----EDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGR 175
Query: 248 IYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDI 306
YGL + R VYGP P+ F ++GK + ++ DG++V R + Y +D+
Sbjct: 176 SYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHG--DGSNV-RSYLYCEDV 231
|
Length = 668 |
| >gnl|CDD|187571 cd05261, CAPF_like_SDR_e, capsular polysaccharide assembling protein (CAPF) like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 4e-15
Identities = 74/317 (23%), Positives = 113/317 (35%), Gaps = 75/317 (23%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+TGA GF+G ++ LK++ D +F D + +
Sbjct: 3 ILITGAKGFIGKNLIARLKEQKDDD--------------------------IFFYDRE-S 35
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVN-LLETCKSSDPQPA 200
D+S LD F + HLA GV ++ + N+ G LL+ + +P
Sbjct: 36 DESELDDFLQGADF--IFHLA---GVNRP-KDEAEFESGNV-GLTERLLDALTRNGKKPP 88
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
I+ +SS D P Y +K A E + Y G + R
Sbjct: 89 ILLSSSIQAAL-------------DNP---YGKSKLAAEELLQEYARETGAPVYIYRLPN 132
Query: 261 VYGPWGRPDM--AYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318
V+G W RP+ A F +I R I + + A + YIDD+V + L+ A
Sbjct: 133 VFGKWCRPNYNSAVATFCYNIARDLPIQIND--PAAEL--TLVYIDDVVDELIQLLEGAP 188
Query: 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTH 378
+G + V V + LL K K +T +LP G F
Sbjct: 189 TYSGGFDQVL-----------PVYKVTVGEIAELLYKF-KESRDTLILPNVGTG---FDR 233
Query: 379 ANISLAQRELGYMPTTD 395
A L L Y+P
Sbjct: 234 A---LYSTYLSYLPPES 247
|
This subgroup of extended SDRs, includes some members which have been identified as capsular polysaccharide assembling proteins, such as Staphylococcus aureus Cap5F which is involved in the biosynthesis of N-acetyl-l-fucosamine, a constituent of surface polysaccharide structures of S. aureus. This subgroup has the characteristic active site tetrad and NAD-binding motif of extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 248 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 84/345 (24%), Positives = 144/345 (41%), Gaps = 54/345 (15%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLD-NFNNYYETSLKKARKGLLERAGVFVID 137
L + +TGA GF+ SH++ LK G ++ D N + + F +
Sbjct: 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDM-------------FCHE 67
Query: 138 ADINDKSLLDKIFNVV-AFTHVMHLAAQAGVRYAMQNPNSYVE-SNIAGFVNLLETCKSS 195
+ D +++ V HV +LAA G +Q+ +S + +N N+LE + +
Sbjct: 68 FHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARIN 127
Query: 196 DPQPAIVWASSSSVYGVNKK----VPFSEKDR-TDQPASLYAATKKAGEAIAHAYNHIYG 250
+ +ASS+ +Y K+ V E D +P Y K A E + Y +G
Sbjct: 128 GVK-RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFG 186
Query: 251 LSITGLRFFTVYGP---W--GRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDD 305
+ RF +YGP W GR F + + ++ DG R FT+ID+
Sbjct: 187 IECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMWG--DGKQ-TRSFTFIDE 243
Query: 306 IVKGCLAGLDTAKKSTGSGGKKKGPAEFRI-FNLGNTTPVPVSRLVSLLEKILKVKAETK 364
V+G L + T S +FR N+G+ V ++ + + + E K
Sbjct: 244 CVEGVL-------RLTKS--------DFREPVNIGSDEMVSMNEMAEIA-----LSFENK 283
Query: 365 VLPL---PRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
LP+ P V+ +++ +L + +LG+ PT L+ GL+ W
Sbjct: 284 KLPIKHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFW 328
|
Length = 370 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 66/236 (27%), Positives = 96/236 (40%), Gaps = 22/236 (9%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
VL+TGA+GFVG ++ L + ++ +D + + + + I
Sbjct: 2 KVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPSGAPRVTQ----------IAG 51
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D+ +L++ + N V HLAA A + + N+ G NLLE + + P+
Sbjct: 52 DLAVPALIEALANGRPDV-VFHLAAIVS-GGAEADFDLGYRVNVDGTRNLLEALRKNGPK 109
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTD-QPASLYAATKKAGEA-IAHAYNHIYGLSITGL 256
P V+ SS +VYG+ P D T PAS Y A K E + + T L
Sbjct: 110 PRFVFTSSLAVYGLPL--PNPVTDHTALDPASSYGAQKAMCELLLNDYSRRGFVDGRT-L 166
Query: 257 RFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLA 312
R TV GRP+ A F IIR V E G VA Y V +A
Sbjct: 167 RLPTVCVRPGRPNKAASAFASTIIR--EPLVGE-EAGLPVAEQLRYWLKSVATAVA 219
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 6e-14
Identities = 92/359 (25%), Positives = 142/359 (39%), Gaps = 56/359 (15%)
Query: 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLG--LD---NFNNYYETSLKKARKGLLERAG 132
+G VLVTG GF GS +SL L + G V G LD + N + +L K +
Sbjct: 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHF---- 58
Query: 133 VFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETC 192
DI D + L K V HLAAQ VR + +P E+N+ G VNLLE
Sbjct: 59 -----GDIRDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAI 113
Query: 193 KSSDPQPAIVWASSSSVYGVNKKV-PFSEKDRTD--QPASLYAATKKAGEAIAHAY---- 245
++ A+V +S Y ++ V + E D P Y+++K E + +Y
Sbjct: 114 RAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDP---YSSSKACAELVIASYRSSF 170
Query: 246 ---NHIYGLSITGLRFFTVY--GPWGR----PDMAYFFFTRDIIRGKRITVYEAPDGASV 296
+ +G+ I R V G W PD+ R K + + PD
Sbjct: 171 FGVANFHGIKIASARAGNVIGGGDWAEDRLIPDV-----IRAFSSNKIVII-RNPDA--- 221
Query: 297 ARDFTYIDDIVKGCLAG-LDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV---PVSRLVSL 352
R + ++ + L+G L A+K + G +N G V +V
Sbjct: 222 TRPWQHVLE----PLSGYLLLAEKLFTGQAEFAGA-----WNFGPRASDNARVVELVVDA 272
Query: 353 LEKILKVKAETKVLPLPRNG-DVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410
LE AE + + + + + S A+ LG+ P LE + + V WY ++
Sbjct: 273 LEFWWGDDAEWEDDSDLNHPHEARLLKLDSSKARTLLGWHPRWGLEEAVSRTVDWYKAW 331
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 7e-14
Identities = 82/367 (22%), Positives = 137/367 (37%), Gaps = 72/367 (19%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGD---GVLGL-DNFNNYYETSLKKARKGLLERAGVFVI 136
+ LV G +GF+G H+ L +RG+ V + F +S V
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPSSS-----------GRVQFH 49
Query: 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD 196
D+ D L+K FN V H A+ N + Y + N+ G N++E C+
Sbjct: 50 TGDLTDPQDLEKAFNEKGPNVVFHTASPD----HGSNDDLYYKVNVQGTRNVIEACRKCG 105
Query: 197 PQPAIVWASSSSVYGVNKKVPFSEKDRT----DQPASLYAATKKAGE-AIAHAYNHIYGL 251
+ +V+ SS+SV V D + D+ Y TK E + A + GL
Sbjct: 106 VK-KLVYTSSASV--VFNGQDIINGDESLPYPDKHQDAYNETKALAEKLVLKANDPESGL 162
Query: 252 SITGLRFFTVYGPWGRPDMAYFFFTRDIIR-GKRITVYEAPDGASVARDFTYIDDIVKG- 309
LR ++GP G + + GK T ++ DG ++ DFTY++++
Sbjct: 163 LTCALRPAGIFGP-GDRQLVPGL--LKAAKNGK--TKFQIGDGNNLF-DFTYVENVAHAH 216
Query: 310 CLAG--LDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVS-LLEKILKVKAETKVL 366
LA L ++ + G+ F I N P+ + E + + + L
Sbjct: 217 ILAADALLSSSHAETVAGE-----AFFITND---EPIYFWDFARAIWEGLGYERPPSIKL 268
Query: 367 PL------------------PRNGD----VQFTHA----NISLAQRELGYMPTTDLETGL 400
P V + NI A++ LGY P LE G+
Sbjct: 269 PRPVALYLASLLEWTCKVLGKEPTFTPFRVALLCSTRYFNIEKAKKRLGYTPVVTLEEGI 328
Query: 401 KKFVRWY 407
++ ++W+
Sbjct: 329 ERTLQWF 335
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 79/362 (21%), Positives = 127/362 (35%), Gaps = 66/362 (18%)
Query: 81 TVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+VLVTG +GF G + L +R G V D +L + +E + D
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFD--IAPPGEALSAWQHPNIE-----FLKGD 53
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
I D++ +++ + V H AA + Y E N+ G N+L+ C+ Q
Sbjct: 54 ITDRNDVEQ--ALSGADCVFHTAAIVP---LAGPRDLYWEVNVGGTQNVLDACQRCGVQ- 107
Query: 200 AIVWASSSSVYGVNKKVPFSEKD---RTDQPASLYAATKKAGEAIAHAYNHIYGLSITGL 256
V+ SSSSV + + + + +YA TK E I N L L
Sbjct: 108 KFVYTSSSSVIF-GGQNIHNGDETLPYPPLDSDMYAETKAIAEIIVLEANGRDDLLTCAL 166
Query: 257 RFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR-DFTYIDDIVKG--CLAG 313
R ++GP G + F +G V+ G DFTY+ ++ A
Sbjct: 167 RPAGIFGP-GDQGLVPILF-EWAEKGLVKFVF----GRGNNLVDFTYVHNLAHAHILAA- 219
Query: 314 LDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETK-VLPLP--- 369
+ K + + + + P + L+ + K L + K L P
Sbjct: 220 ---------AALVKGKTISGQTYFITDAEPHNMFELLRPVWKALGFGSRPKIRLSGPLAY 270
Query: 370 ------------------------RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVR 405
R +I+ AQ++LGY P E GL + +
Sbjct: 271 CAALLSELVSFMLGPYFVFSPFYVRALVTPMYF-SIAKAQKDLGYAPRYSNEEGLIETLN 329
Query: 406 WY 407
WY
Sbjct: 330 WY 331
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 89/373 (23%), Positives = 129/373 (34%), Gaps = 69/373 (18%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF------NNYYETSLK---------KAR 124
+ VL+ G G+ G +L L KRG V +DN SL +A
Sbjct: 1 MKVLILGGDGYCGWPTALHLSKRGHEVCIVDNLVRRRIDVELGLESLTPIASIHERLRAW 60
Query: 125 KGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVES---N 181
K L + F + D D L ++ V+H A Q Y+M + + N
Sbjct: 61 KELTGKTIEFYVG-DACDYEFLAELLASHEPDAVVHFAEQRSAPYSMIDREHANYTQHNN 119
Query: 182 IAGFVNLLETCKSSDPQPAIVWASSSSVYGV-NKKVP---FSEKD--RTD------QPAS 229
+ G +NLL K DP +V + YG N +P + + R D Q S
Sbjct: 120 VIGTLNLLFAIKEFDPDCHLVKLGTMGEYGTPNIDIPEGYITIEHNGRRDTLPYPKQAGS 179
Query: 230 LYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWG-----------RPDMAYFF---- 274
Y +K +G+ IT L VYG R D F
Sbjct: 180 WYHLSKVHDSHNIMFACKAWGIRITDLNQGVVYGTKTEETEADERLINRFDYDGVFGTVL 239
Query: 275 --FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAE 332
F G +TVY G + R F I D V+ L+ K E
Sbjct: 240 NRFCVQAAIGHPLTVY-GKGGQT--RGFISIRDTVQCLELALENPAK----------AGE 286
Query: 333 FRIFNLGNTTPVPVSRLVSLLEKI---LKVKAETKVLPLPRNGDVQ--FTHANISLAQRE 387
+R+FN T V L ++ + L + + + LP PR + + N L +
Sbjct: 287 YRVFN-QFTEQFSVGELAEMVAEAGSKLGLDVKVEHLPNPRVEAEEHYYNAKNTKLL--D 343
Query: 388 LGYMPTTDLETGL 400
LG P E+ L
Sbjct: 344 LGLEPHYLSESLL 356
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 7e-12
Identities = 90/367 (24%), Positives = 144/367 (39%), Gaps = 72/367 (19%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
VL+ G GF+G H+S + + D V G+D + + R E D I
Sbjct: 4 VLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEG------DITI 57
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGF-----VNLLETCKSS 195
N K ++ ++V ++ L A A P +YV+ + F NL +
Sbjct: 58 N-KEWIE--YHVKKCDVILPLVAIA-------TPATYVKQPLRVFELDFEANLPIVRSAV 107
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRT------DQPASLYAATKKAGEAIAHAYNHIY 249
+V+ S+S VYG+ F + ++P +YA +K+ + + AY
Sbjct: 108 KYGKHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLMDRVIWAYGMEE 167
Query: 250 GLSITGLRFFTVYGPWGRPDMAYFF----------FTRDIIRGKRITVYEAPDGASVARD 299
GL+ T R F GP D Y F I+RG+ I++ DG S R
Sbjct: 168 GLNFTLFRPFNWIGP--GLDSIYTPKEGSSRVVTQFLGHIVRGEPISLV---DGGSQKRA 222
Query: 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKV 359
FT IDD + + ++ K G A +I+N+GN P + L K+L++
Sbjct: 223 FTDIDDGIDALMKIIEN----------KDGVASGKIYNIGN--PKNNHSVRELANKMLEL 270
Query: 360 KAE----------TKVLPLPR-----NG--DVQFTHANISLAQRELGYMPTTDLETGLKK 402
AE K++ G DVQ I +ELG+ P T ++ L++
Sbjct: 271 AAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNRVPKIDNTMQELGWAPKTTMDDALRR 330
Query: 403 FVRWYLS 409
Y
Sbjct: 331 IFEAYRG 337
|
Length = 347 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 84/342 (24%), Positives = 121/342 (35%), Gaps = 60/342 (17%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
VLVTGA GF+G + L RG + + + + DI
Sbjct: 1 KVLVTGANGFIGRALVDKLLSRG-----------EEVRIAVRNAENAEPSVVLAELP-DI 48
Query: 141 NDKSLL----DKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD 196
+ + L D + ++ A HVM+ Q + Y + N L
Sbjct: 49 DSFTDLFLGVDAVVHLAARVHVMN--DQGADPLSD-----YRKVNTELTRRLARAAARQG 101
Query: 197 PQPAIVWASSSSVYG---VNKKVPFSEKDRTDQPASLYAATKKAGE-AIAHAYNHIYGLS 252
+ V+ SS V G V PF E D P Y +K E A+ G+
Sbjct: 102 VK-RFVFLSSVKVNGEGTVGA--PFDETDPPA-PQDAYGRSKLEAERALLELGAS-DGME 156
Query: 253 ITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA-RDFTYIDDIVKGCL 311
+ LR VYGP R + A R I RG + P GA R +D++V
Sbjct: 157 VVILRPPMVYGPGVRGNFAR--LMRLIDRGLPL-----PPGAVKNRRSLVSLDNLVDAIY 209
Query: 312 AGLDTAKKSTG----SGGKKKGPAE----FRIFNLGNTT---PVPVSRLVSLLEKILKVK 360
+ K + G S G AE R LG T PVP L + + K
Sbjct: 210 LCISLPKAANGTFLVSDGPPVSTAELVDEIRR-ALGKPTRLLPVPAGLLRFAAKLLGKRA 268
Query: 361 AETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKK 402
++ G +Q+ + Q ELG+ P LE GL++
Sbjct: 269 VIQRLF-----GSLQY---DPEKTQNELGWRPPISLEEGLQE 302
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 6e-11
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 14/207 (6%)
Query: 83 LVTGAAGFVGSHVSLALKKRGDGVLGL----DNFNNYYETSLKKARKGLLERAGVFVIDA 138
L+TG G GS+++ L ++G V GL +FN + + + +A + +
Sbjct: 4 LITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNV-NKARMKLHYG 62
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D+ D S L +I + + T + +LAAQ+ V+ + + P + + G + LLE ++
Sbjct: 63 DLTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLI 122
Query: 199 PAIVW--ASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGL-SITG 255
++ + AS+S +YG +++P +E P S YAA K I Y YGL ++ G
Sbjct: 123 KSVKFYQASTSELYGKVQEIPQNETTPF-YPRSPYAAAKLYAHWITVNYREAYGLFAVNG 181
Query: 256 LRFFTVYGPWGRPDMAYFFFTRDIIRG 282
+ F P F TR I R
Sbjct: 182 ILF-----NHESPRRGENFVTRKITRA 203
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 7e-11
Identities = 56/240 (23%), Positives = 92/240 (38%), Gaps = 34/240 (14%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDG---VLGLDNFNNYYETSLKKARKGLLERAGVFVID 137
T+LVTG AG +GS + + K G V D + L + + + I
Sbjct: 4 TILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLH---ELVRELRSRFPHDKLRFII 60
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
D+ DK L + F V H AA V NP +++N+ G N+++ +
Sbjct: 61 GDVRDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAIENGV 120
Query: 198 QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYN-HIYGLSITGL 256
+ + ++ +V P ++ ATK+ E + A N + + +
Sbjct: 121 EKFVCISTDKAVN----------------PVNVMGATKRVAEKLLLAKNEYSSSTKFSTV 164
Query: 257 RFFTVYGPWGR--PDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGL 314
RF V G G P F + I +G +TV + PD + R F I + V L
Sbjct: 165 RFGNVLGSRGSVLP-----LFKKQIKKGGPLTVTD-PD---MTRFFMTIPEAVDLVLQAC 215
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 2e-10
Identities = 64/288 (22%), Positives = 96/288 (33%), Gaps = 56/288 (19%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+ G F+G + L G V T + R GV I D N
Sbjct: 3 ILIIGGTRFIGKALVEELLAAGHDV-----------TVFNRGRTKPDLPEGVEHIVGDRN 51
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D+ L+++ F V+ +Y + L+ K Q
Sbjct: 52 DRDALEELLGGEDFDVVV------------DT-IAYTPRQVE---RALDAFKGRVKQ--Y 93
Query: 202 VWASSSSVYGVNKKV-----PFSEKD--RTDQPASLYAATKKAGEAIAHAYNHIYGLSIT 254
++ SS+SVY +V P E D P Y K+A E + T
Sbjct: 94 IFISSASVYLKPGRVITESTPLREPDAVGLSDPWD-YGRGKRAAEDVLIEA---AAFPYT 149
Query: 255 GLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGL 314
+R +YGP +FF R + RG+ I V P F ++ D+ + L
Sbjct: 150 IVRPPYIYGPGDYTGRLAYFFDR-LARGRPILV---PGDGHSLVQFIHVKDLARALL--- 202
Query: 315 DTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE 362
G+ G K IFN+ V L+ K L +AE
Sbjct: 203 -------GAAGNPKAIGG--IFNITGDEAVTWDELLEACAKALGKEAE 241
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-10
Identities = 40/165 (24%), Positives = 66/165 (40%), Gaps = 24/165 (14%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+ GA GF+G ++ L ++G V L R ++ V V++ D+
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVR---------NTKRLSKEDQEPVAVVEGDLR 51
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D L V V+HLA A ++ + E ++ G N+LE K +
Sbjct: 52 DLDSLSDAVQGV--DVVIHLAG------APRDTRDFCEVDVEGTRNVLEAAKEA-GVKHF 102
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYN 246
++ SS YG E + P+S Y A K EA+ +
Sbjct: 103 IFISSLGAYG----DLHEETE--PSPSSPYLAVKAKTEAVLREAS 141
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 3e-10
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 26/184 (14%)
Query: 82 VLVTGAAGFVGSHVSLALKKR--GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+L+TG G +GS ++ L+KR D V+ D K +L +G F D
Sbjct: 2 ILITGGLGQIGSELAKLLRKRYGKDNVIASD--------IRKPPAHVVL--SGPFEY-LD 50
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ D L++I T ++HLAA +NP + N+ G N+LE + + +
Sbjct: 51 VLDFKSLEEIVVNHKITWIIHLAALLSAV-GEKNPPLAWDVNMNGLHNVLELAREHNLR- 108
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQ-----PASLYAATKKAGEAIAHAYNHIYGLSIT 254
I S+ +G P + ++ T P ++Y +K A E + Y+H +G+
Sbjct: 109 -IFVPSTIGAFG-----PTTPRNNTPDDTIQRPRTIYGVSKVAAELLGEYYHHKFGVDFR 162
Query: 255 GLRF 258
LR+
Sbjct: 163 SLRY 166
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 1e-09
Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 24/184 (13%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGL--DNFNNYYETSLKKARKGLLERAGVFVIDAD 139
VLVTGA+GFV SHV L +RG V D L R + V AD
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLDLDA-KPGRLELAV--AD 57
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ D+ D++ A V H+A V ++ ++PN ++ I G +N L+ ++
Sbjct: 58 LTDEQSFDEVIKGCAG--VFHVATP--VSFSSKDPNEVIKPAIGGTLNALKAAAAAKSVK 113
Query: 200 AIVWASSSSVYGVN-----------KKVPFSEKDRTDQ-PASLYAATKKAGEAIAHAY-- 245
V SS+ + K E D + A +YAA+K E A +
Sbjct: 114 RFVLTSSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTLAEKAAWKFAD 173
Query: 246 -NHI 248
N+I
Sbjct: 174 ENNI 177
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 56/228 (24%), Positives = 80/228 (35%), Gaps = 52/228 (22%)
Query: 78 RGLTVLVTGAAGFVGSHVSLALKKRGDG---VLGLDNFNNYYETSLKKARKGLLERAG-- 132
G TVLVTG G +GS + + K + D E L L E+
Sbjct: 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRD------EYKLYLIDMELREKFPEL 302
Query: 133 --VFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLE 190
F I D+ D+ +++ V H AA V NP +++N+ G N+ E
Sbjct: 303 KLRFYI-GDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAE 361
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYG 250
GV KK D+ P ++ ATK+ E + A N
Sbjct: 362 AAIK---------------NGV-KKFVLISTDKAVNPTNVMGATKRLAEKLFQAAN--RN 403
Query: 251 LSITGLRFFTV-YG----------PWGRPDMAYFFFTRDIIRGKRITV 287
+S TG RF V +G P F + I G +TV
Sbjct: 404 VSGTGTRFCVVRFGNVLGSRGSVIP---------LFKKQIAEGGPLTV 442
|
Length = 588 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 68/328 (20%), Positives = 116/328 (35%), Gaps = 57/328 (17%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+TGA G +G + LK+RG V+G RA +F + D+
Sbjct: 2 ILITGATGMLGRALVRLLKERGYEVIGTGR-----------------SRASLFKL--DLT 42
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D +++ +++ AA V +P N+ NL K + +
Sbjct: 43 DPDAVEEAIRDYKPDVIINCAAYTRVDKCESDPELAYRVNVLAPENLARAAKEVGAR--L 100
Query: 202 VWASSSSVY-GVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
+ S+ V+ G KK P+ E+D + P ++Y +K GE N Y LR
Sbjct: 101 IHISTDYVFDG--KKGPYKEEDAPN-PLNVYGKSKLLGEVAVLNANPRY----LILRTSW 153
Query: 261 VYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKS 320
+YG + + R K + V G+ TY D+ L ++ +
Sbjct: 154 LYGELKNGENFVEWMLRLAAERKEVNVVHDQIGSP-----TYAADLADAILELIERNSLT 208
Query: 321 -----TGSGGKKKGPAEF--RIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGD 373
+ SG K EF I + V +I + + LP R +
Sbjct: 209 GIYHLSNSGPISK--YEFAKLIADALGLPDV----------EIKPITSSEYPLPARRPAN 256
Query: 374 VQFTHANISLAQRELGYMPTTDLETGLK 401
+ + ELG + D + L+
Sbjct: 257 SSLDCSKL----EELGGIKPPDWKEALR 280
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|178326 PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 69/357 (19%), Positives = 121/357 (33%), Gaps = 74/357 (20%)
Query: 83 LVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND 142
V G G VGS + L+ G + + + K + D+
Sbjct: 1 FVAGHRGLVGSAIVRKLEALG------------FTNLVLRTHK-----------ELDLTR 37
Query: 143 KSLLDKIFNVVAFTHVMHLAAQAGVRYA-MQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
++ ++ F T+V+ AA+ G +A M P ++ N+ N+++ + +
Sbjct: 38 QADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KL 96
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASL----YAATKKAGEAIAHAYNHIYGLSITGLR 257
++ SS +Y P E P YA K AG + AY YG
Sbjct: 97 LFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQYGWDAISGM 156
Query: 258 FFTVYGPWGRPDMAYFFFTRD-------------IIRGKRITVYEAPD-----GASVARD 299
+YGP D I R AP+ S R+
Sbjct: 157 PTNLYGP------------HDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLRE 204
Query: 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKV 359
F ++DD+ + + + N+G+ V + L L++++ V
Sbjct: 205 FLHVDDLADAVVFLMRRY-------------SGAEHVNVGSGDEVTIKELAELVKEV--V 249
Query: 360 KAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSASA 416
E +++ D S R LG+ P L+ GL++ +WYL Y +
Sbjct: 250 GFEGELVWDTSKPDGTPRKLMDSSKLRSLGWDPKFSLKDGLQETYKWYLENYETGGK 306
|
Length = 306 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 79/366 (21%), Positives = 120/366 (32%), Gaps = 55/366 (15%)
Query: 83 LVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND 142
LVTG GF+G H+ L +R + + + + + L + + + V I+ DI D
Sbjct: 3 LVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTDIEGDIKD 62
Query: 143 KSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIV 202
S L + V+ V+H AA V N E N+ G +LE C ++ +V
Sbjct: 63 LSFLFRACQGVSV--VIHTAAIVDVFG-PPNYEELEEVNVNGTQAVLEACVQNN-VKRLV 118
Query: 203 WASSSSVYGVN-KKVPFSEKDRTDQP-----ASLYAATKKAGEAIAHAYN----HIYGLS 252
+ SS V G N K P D P YA++K E I N G
Sbjct: 119 YTSSIEVAGPNFKGRPIFNGV-EDTPYEDTSTPPYASSKLLAENIVLNANGAPLKQGGYL 177
Query: 253 IT-GLRFFTVYGPWGRPDMAYFFFTRDIIR-GKRITVYEAPDGA-SVARDFTYIDDIVKG 309
+T LR +YG F +I + P S Y+ ++
Sbjct: 178 VTCALRPMYIYGEGSH-------FLTEIFDFLLTNNGWLFPRIKGSGVNPLVYVGNVAWA 230
Query: 310 ---CLAGLDTAKKSTGS-----------------GGKKKGPAEFRIFNLGNTTPVPVSRL 349
L K+ + R+ + VP+ L
Sbjct: 231 HILAAKALQVPDKAIRGQFYFISDDTPHNSYSDFNYELLKELGLRL--KTSWWYVPLFLL 288
Query: 350 V--SLLEKILKVKAETKVLPLPRNGDVQFTHANISL------AQRELGYMPTTDLETGLK 401
+ L +I+ V PR N AQR GYMP E +
Sbjct: 289 YFLAFLLEIVSFLLRPYVKYRPRYNRHAVALTNSMFTFSYLKAQRHFGYMPLFSWEESKE 348
Query: 402 KFVRWY 407
+ +W
Sbjct: 349 RTAKWV 354
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 26/184 (14%)
Query: 83 LVTGAAGFVGSHVSLALKKRGDGVLGL----DNFNN------YYETSLKKARKGLLERAG 132
L+TG G GS+++ L +G V G+ NFN Y + KAR
Sbjct: 10 LITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKAR-------- 61
Query: 133 VFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLE-- 190
+ + D++D S L + + + V +LAAQ+ V + + P+ + G + LLE
Sbjct: 62 MKLHYGDLSDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAV 121
Query: 191 --TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD-QPASLYAATKKAGEAIAHAYNH 247
+ + Q A SS +YG P + + T P S YA K A Y
Sbjct: 122 RLHGQETGRQIKYYQAGSSEMYG---STPPPQSETTPFHPRSPYAVAKVAAHWYTVNYRE 178
Query: 248 IYGL 251
YGL
Sbjct: 179 AYGL 182
|
Length = 340 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 23/180 (12%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLG----LDNFNNYYETSLKKARKGLLERAGVFVI 136
VLVTGA GF+ SH+ L K G V G L LE FVI
Sbjct: 1 LVLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSKSAKLKALLKAAGYNDRLE----FVI 56
Query: 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLETCKSS 195
D+ + D+ V +V+H+A+ + + + ++ + G +N+LE K++
Sbjct: 57 VDDLTAPNAWDEALKGV--DYVIHVASP--FPFTGPDAEDDVIDPAVEGTLNVLEAAKAA 112
Query: 196 DPQPAIVWASS-SSVYGVN---KKVPFSEKDRTD------QPASLYAATKKAGEAIAHAY 245
+V SS ++V F+E+D D Y A+K E A +
Sbjct: 113 GSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAAWEF 172
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 47/197 (23%), Positives = 74/197 (37%), Gaps = 28/197 (14%)
Query: 83 LVTGAAGFVGSHVSLALKKRGDG--VLGLDNFNNYYETSLKKARKGLLERAGVFVIDA-- 138
LVTG GF+G H+ L + G+ V D L+ + + L + + + VI
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFD---------LRFSPELLEDFSKLQVITYIE 51
Query: 139 -DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
D+ DK L + V+H AA V ++ ++ N+ G N+L+ C +
Sbjct: 52 GDVTDKQDLRRALQGSDV--VIHTAAIIDVF-GKAYRDTIMKVNVKGTQNVLDACVKAG- 107
Query: 198 QPAIVWASSSSVYGVN-KKVPFSEKD----RTDQPASLYAATKKAGEAIAHAYNHIY--- 249
+V+ SS V G N P D Y +K E + N
Sbjct: 108 VRVLVYTSSMEVVGPNSYGQPIVNGDETTPYESTHQDPYPESKALAEKLVLKANGSTLKN 167
Query: 250 -GLSIT-GLRFFTVYGP 264
G T LR ++G
Sbjct: 168 GGRLYTCALRPAGIFGE 184
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 64/253 (25%), Positives = 106/253 (41%), Gaps = 61/253 (24%)
Query: 82 VLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFV--IDA 138
++VTG AGF+GS++ AL +G +L +DN LK K FV +D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN--------LKDGTK--------FVNLVDL 45
Query: 139 DINDKSLLDK---IFNVVA------FTHVMHLAAQAGV-----RYAMQNPNSYVESNIAG 184
DI D +DK + ++A + H A + +Y M N Y +
Sbjct: 46 DIAD--YMDKEDFLAQIMAGDDFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSK----- 98
Query: 185 FVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKK-----AGE 239
LL C + + ++ASS++ YG + F E+ ++P ++Y +K +
Sbjct: 99 --ELLHYC--LEREIPFLYASSAATYG-GRTDDFIEEREYEKPLNVYGYSKFLFDEYVRQ 153
Query: 240 AIAHAYNHIYGLSITGLRFFTVYGP--WGRPDMAY--FFFTRDIIRGKRITVYEAPDGAS 295
+ A + I G R+F VYGP + MA F + G+ ++E +
Sbjct: 154 ILPEANSQ-----ICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSEN-- 206
Query: 296 VARDFTYIDDIVK 308
RDF Y+ D+
Sbjct: 207 FKRDFVYVGDVAA 219
|
Length = 308 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 4e-07
Identities = 54/223 (24%), Positives = 80/223 (35%), Gaps = 50/223 (22%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDG---VLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
VLVTG G +GS + + K + D F YE + ++ + F+
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEF-KLYEIRQELRQEYNDPKLRFFI--G 57
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D+ D+ L++ V H AA V NP +++N+ G N+ E
Sbjct: 58 DVRDRERLERAMEQHGVDTVFHAAALKHVPLVEYNPMEAIKTNVLGTENVAEAAIE---- 113
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQ---PASLYAATKKAGEAIAHAYNHIYGLSITG 255
GV K V S TD+ P ++ ATK+ E + A N G T
Sbjct: 114 -----------NGVEKFVLIS----TDKAVNPTNVMGATKRLAEKLFQAANRESGSGKT- 157
Query: 256 LRFFTV-YG----------PWGRPDMAYFFFTRDIIRGKRITV 287
RF V +G P F + I G +TV
Sbjct: 158 -RFSVVRFGNVLGSRGSVIP---------LFKKQIANGGPVTV 190
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 63/270 (23%), Positives = 97/270 (35%), Gaps = 67/270 (24%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+LVTGA G +G ++ L +RG V+ LD R + D+
Sbjct: 1 ILVTGANGQLGRELTRLLAERGVEVVALD-------------RP-----------ELDLT 36
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D + + V++ AA V A P N G NL E C + +
Sbjct: 37 DPEAVAALVREARPDVVVNAAAYTAVDKAESEPELAYAVNALGPGNLAEACAARGA--PL 94
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYN--HIYGLSITGLRFF 259
+ S+ V+ K P+ E D T P ++Y TK AGE A N H+ LR
Sbjct: 95 IHISTDYVFDGAKGGPYREDDPTG-PLNVYGRTKLAGEQAVLAANPRHLI------LRTA 147
Query: 260 TVYGPWGRPDMAYFFFTRDIIR----GKRITV----YEAPDGASVARDFTYIDDIVKGCL 311
VYG +G F + ++R + V +P T D+ L
Sbjct: 148 WVYGEYGNN------FVKTMLRLAAERDELRVVDDQLGSP---------TSARDLADALL 192
Query: 312 AGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341
A + + +GPA ++L +
Sbjct: 193 ALIR---------KRLRGPALAGTYHLAGS 213
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 53/256 (20%), Positives = 86/256 (33%), Gaps = 50/256 (19%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI- 140
V VTG GF+G H+ L + G VL L + + ++ + LE V V++ D+
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVR-SESLGEAHERIEEAGLEADRVRVLEGDLT 59
Query: 141 ---------NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLE 190
+ L K+ HV+H AA Y Q P +NI G ++LE
Sbjct: 60 QPNLGLSAAASRELAGKV------DHVIHCAAS----YDFQAPNEDAWRTNIDGTEHVLE 109
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP-ASLYAATKKAGEAIAHAY---- 245
D Q S++ V G + + Q + Y +K E + A
Sbjct: 110 LAARLDIQRFHY-VSTAYVAGNREGNIRETELNPGQNFKNPYEQSKAEAEQLVRAAATQI 168
Query: 246 -------NHIYGLSITGLRFFTVYGPWGRPDMAYFFFT--RDIIRGKRITVYEAPDGASV 296
+ + G S TG R + G Y + R + P
Sbjct: 169 PLTVYRPSIVVGDSKTG-RIEKIDGL-------YELLNLLAKLGRWLPM-----PGNKGA 215
Query: 297 ARDFTYIDDIVKGCLA 312
+ +D + +
Sbjct: 216 RLNLVPVDYVADAIVY 231
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D+ DK L + V + V+H AA V A NP + +NI G N+++ +
Sbjct: 61 DVRDKERLTRALRGVDY--VVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDN--- 115
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
GV + V S D+ P +LY ATK A + + A N+I G G RF
Sbjct: 116 ------------GVKRVVALS-TDKAANPINLYGATKLASDKLFVAANNISGSK--GTRF 160
Query: 259 FTV-YG 263
V YG
Sbjct: 161 SVVRYG 166
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 62/290 (21%), Positives = 98/290 (33%), Gaps = 66/290 (22%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+TGA G +G+ + AL + V+ D + DI
Sbjct: 3 ILITGANGQLGTELRRALPGEFE-VIATD------------------------RAELDIT 37
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D + ++ V++ AA V A P N G NL + +
Sbjct: 38 DPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGAR--L 95
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE-AIAHAYNHIYGLSITGLRFFT 260
V S+ V+ K P+ E D + P ++Y +K AGE A+ A I LR
Sbjct: 96 VHISTDYVFDGEKGGPYKETDTPN-PLNVYGRSKLAGEEAVRAAGPRHL---I--LRTSW 149
Query: 261 VYGPWGRPDMAYFFFT--RDIIRGKRITVYE----APDGASVARDFTYIDDIVKGCLAGL 314
VYG +G F T R GK + V + +P TY +D+ L L
Sbjct: 150 VYGEYGNN----FVKTMLRLAKEGKELKVVDDQYGSP---------TYTEDLADAILELL 196
Query: 315 DTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETK 364
+ E +++L N+ + + V E
Sbjct: 197 EK-------------EKEGGVYHLVNSGECSWYEFAKAIFEEAGVDGEVI 233
|
Length = 281 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+ VLVTGA GFVGS V L ++G+ V L + + LE V +++ D
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVL---------VRPTSDRRNLEGLDVEIVEGD 51
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ D + L K V + H+AA R +P +N+ G NLL + +
Sbjct: 52 LRDPASLRK--AVAGCRALFHVAAD--YRLWAPDPEEMYAANVEGTRNLLRAALEAGVE- 106
Query: 200 AIVWASSSSVYGVN 213
+V+ SS + GV
Sbjct: 107 RVVYTSSVATLGVR 120
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 89/387 (22%), Positives = 136/387 (35%), Gaps = 73/387 (18%)
Query: 41 LFFFLISPSPSATFRRHSSGGPQWEKQIVKSTRPR------STRGLTVLVTGAAGFVGSH 94
+ L + + S F S Q + + P S++ V+V G G+ G
Sbjct: 3 MAHLLSTSTSSKAFTSASPASAQSTPAVTELATPSAPGSSSSSKKKKVMVIGGDGYCGWA 62
Query: 95 VSLALKKRG--------------DGVLGLDNFNNYYETSLK-KARKGLLERAGVFVIDAD 139
+L L KRG D LGLD+ + + K + + + D
Sbjct: 63 TALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYV-GD 121
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYV---ESNIAGFVNLLETCKSSD 196
I D L + F V+H Q Y+M + + V +N+ G +N+L K
Sbjct: 122 ICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFA 181
Query: 197 PQPAIVWASSSSVYGV-NKKVP-----FSEKDRTD------QPASLYAATKKAGEAIAHA 244
P +V + YG N + + RTD Q +S Y +K
Sbjct: 182 PDCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAF 241
Query: 245 YNHIYGLSITGLRFFTVYGP-----------WGRPDMAYFFFT---RDIIR---GKRITV 287
+G+ T L VYG R D F T R ++ G +TV
Sbjct: 242 TCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVFGTALNRFCVQAAVGHPLTV 301
Query: 288 YEAPDGASVARDFTYIDDIVKGC--LAGLDTAKKSTGSGGKKKGPAEFRIFN-LGNTTPV 344
Y R F I D V+ C +A + AK P EFR+FN V
Sbjct: 302 YGK---GGQTRGFLDIRDTVR-CIEIAIANPAK-----------PGEFRVFNQFTEQFSV 346
Query: 345 -PVSRLVSLLEKILKVKAETKVLPLPR 370
+++LV+ + L + E +P PR
Sbjct: 347 NELAKLVTKAGEKLGLDVEVISVPNPR 373
|
Length = 442 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 45/192 (23%)
Query: 81 TVLVTGAAGFVGSHV--SLALKKRGDGVLGL--------------DNFNNYYETSLKKAR 124
TVL+TGA GF+G+++ L +K + L DN Y
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLW---- 56
Query: 125 KGLLERAGVFVIDADINDKSL---------LDKIFNVVAFTHVMHLAAQAGVRYAMQNPN 175
LE + + V+ D++ +L L + +V ++H A V + +
Sbjct: 57 -DELELSRIKVVVGDLSKPNLGLSDDDYQELAEEVDV-----IIHNGAN--VNW-VYPYE 107
Query: 176 SYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL----- 230
+N+ G LL+ + +P + + S+ SV+ + +++ D S
Sbjct: 108 ELKPANVLGTKELLKLAATGKLKP-LHFVSTLSVFSAEEYNALDDEESDDMLESQNGLPN 166
Query: 231 -YAATKKAGEAI 241
Y +K E +
Sbjct: 167 GYIQSKWVAEKL 178
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 22/146 (15%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+++TG GF+G ++ L G V+ L ++ K A V D
Sbjct: 1 KIVITGGTGFIGRALTRRLTAAGHEVVVLS----------RRPGKAEGL-AEVITWDGLS 49
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQ--AGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
L V++LA + A R+ N + S I L+E ++
Sbjct: 50 LGPWELPGA------DAVINLAGEPIACRRWTEANKKEILSSRIESTRVLVEAIANAPAP 103
Query: 199 PAIVWASSSSV--YGVNKKVPFSEKD 222
P V S+S+V YG + +E
Sbjct: 104 PK-VLISASAVGYYGHSGDEVLTENS 128
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 44/190 (23%), Positives = 72/190 (37%), Gaps = 26/190 (13%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+TG GF+G ++ L KRG V L + G
Sbjct: 1 ILITGGTGFIGRALTQRLTKRGHEVTIL----------TRSPPPG-ANTKWEGYKPWAGE 49
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQ--AGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
D L+ V++LA + A R+ + +S I L+E ++ Q
Sbjct: 50 DADSLE------GADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRLLVEAIAAA-EQK 102
Query: 200 AIVWASSSSV--YGVNKKVPFSEKDRTDQPASLYAA-TKKAGEAIAHAYNHIYGLSITGL 256
V+ S+S+V YG ++ ++E+D + A + E A A + G + L
Sbjct: 103 PKVFISASAVGYYGPSEDREYTEEDSP--AGDDFLAELCRDWEEAAQAAEDL-GTRVVLL 159
Query: 257 RFFTVYGPWG 266
R V GP G
Sbjct: 160 RTGIVLGPKG 169
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291 |
| >gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 6e-04
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGV--LGLDNFNNYYETSLKKARKGLLERAG 132
S G V+VTGAA +G+ ++ L RG + + L+ E L L
Sbjct: 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLE------EAELAALAAELGGDDR 58
Query: 133 VFVIDADINDKSLLDK 148
V + AD+ D + +
Sbjct: 59 VLTVVADVTDLAAMQA 74
|
Length = 296 |
| >gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 26/211 (12%)
Query: 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVF 134
R + T VTGA G++GS + L +RG V L K ++G +R +F
Sbjct: 6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEG--DRLRLF 63
Query: 135 VIDADINDKSLLDKIFNVVAFTHVMHLAA--QAGVRYAMQNPNSYVESNI-----AGFVN 187
AD+ ++ D+ V V H+AA + V N YV+S + G +N
Sbjct: 64 --RADLQEEGSFDEA--VKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLN 119
Query: 188 LLETCKSSDPQPAIVWASSSSVY------GVNKKV-------PFSEKDRTDQPASLYAAT 234
+L++C S +V+ SS S G + V P T +Y +
Sbjct: 120 VLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVWNTKASGWVYVLS 179
Query: 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGPW 265
K E A Y G+ + + TV GP+
Sbjct: 180 KLLTEEAAFKYAKENGIDLVSVITTTVAGPF 210
|
Length = 353 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 27/166 (16%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+L+TGA G +G + L G V+ L R+ D+
Sbjct: 1 RILITGANGQLGRELVQQLSPEGRVVVALT-------------------RS-----QLDL 36
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D L+++ + V++ AA V A +P N NL
Sbjct: 37 TDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA--R 94
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYN 246
+V S+ V+ K P+ E D T+ P ++Y +K AGE A
Sbjct: 95 LVHISTDYVFDGEGKRPYREDDATN-PLNVYGQSKLAGEQAVRAAG 139
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 28/111 (25%), Positives = 36/111 (32%), Gaps = 32/111 (28%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
VLV GA G VG HV L RG V L ++ LE AG V+ D+
Sbjct: 1 KVLVVGATGKVGRHVVRELLDRGYQVRAL---------VRDPSQAEKLEAAGAEVVVGDL 51
Query: 141 NDKSLLDKIFN---VVAFTH--------------------VMHLAAQAGVR 168
D L V ++ A +AGV+
Sbjct: 52 TDAESLAAALEGIDAVISAAGSGGKGGPRTEAVDYDGNINLIDAAKKAGVK 102
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 52/235 (22%), Positives = 82/235 (34%), Gaps = 42/235 (17%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
VL+ G G++G ++ L +G V G S +K AGV + AD+
Sbjct: 1 VLILGC-GYLGQRLARQLLAQGWQVTGT-------TRSPEKLAAD--RPAGVTPLAADLT 50
Query: 142 DKSLLDKIFNVVAFTH-VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
LL + H V+ L AG +P G LL+
Sbjct: 51 QPGLLADV------DHLVISLPPPAGSYRGGYDP---------GLRALLDALAQLPAVQR 95
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
+++ SS+ VYG +++ + ++ P++ E A T LR
Sbjct: 96 VIYLSSTGVYG-DQQGEWVDETSPPNPSTESGRALLEAEQALLALGS---KPTTILRLAG 151
Query: 261 VYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315
+YGP GR + R R AP R ++DD+V L
Sbjct: 152 IYGP-GRHPL-----RRLAQGTGRPPAGNAP----TNR--IHVDDLVGALAFALQ 194
|
Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.004
Identities = 51/219 (23%), Positives = 96/219 (43%), Gaps = 21/219 (9%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLG-LDNFNNYYETSLKKARKGLLERAGVFVID 137
G V VTGA+G++ S + L RG V + + + +T A G ER +F
Sbjct: 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLF--K 62
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNS-YVESNIAGFVNLLETCKSSD 196
AD+ ++S ++ + V H A+ V + +++P + ++ + G +N+L TCK +
Sbjct: 63 ADLLEESSFEQA--IEGCDAVFHTASP--VFFTVKDPQTELIDPALKGTINVLNTCKETP 118
Query: 197 PQPAIVWASSSSVYGVNKKVPFSEKDRTDQ-----PA------SLYAATKKAGEAIAHAY 245
++ SS++ + ++ P D D+ P+ + Y +K E A +
Sbjct: 119 SVKRVILTSSTAAV-LFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAAWEF 177
Query: 246 NHIYGLSITGLRFFTVYGPWGRPDMAYFF-FTRDIIRGK 283
G+ + L + GP +P + + D I GK
Sbjct: 178 AKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGK 216
|
Length = 322 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 424 | |||
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 100.0 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 100.0 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.98 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.98 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.96 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.96 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.96 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.95 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.94 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.94 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.94 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.93 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.93 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.93 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.93 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.93 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.93 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.93 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.93 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.93 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.93 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.93 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.93 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.92 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.92 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.92 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.92 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.92 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.92 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.92 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.91 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.91 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.91 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.91 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.91 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.91 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.91 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.91 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.91 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.91 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.91 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.91 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.9 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.9 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.9 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.9 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.9 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.9 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.9 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.9 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.9 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.9 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.9 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.9 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.9 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.9 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.89 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.89 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.89 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.89 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.89 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.89 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.89 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.89 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.89 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.89 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.89 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.89 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.89 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.89 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.89 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.89 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.88 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.88 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.88 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.88 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.88 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.88 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.88 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.88 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.88 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.88 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.87 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.87 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.87 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.87 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.87 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.87 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.87 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.87 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.86 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.86 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.86 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.86 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.86 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.86 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.86 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.86 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.86 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.86 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.86 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.86 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.86 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.86 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.86 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.85 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.85 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.85 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.85 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.85 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.85 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.84 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.84 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.83 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.83 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.83 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.83 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.83 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.83 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.83 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.83 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.82 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.82 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.82 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.81 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.81 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.8 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.8 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.79 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.78 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.77 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.77 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.77 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.76 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.75 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.75 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.74 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.74 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.74 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.73 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.73 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.72 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.72 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.71 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.69 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.66 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.65 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.62 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.62 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.58 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.57 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.55 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.54 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.41 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.33 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.26 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.24 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.21 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.19 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.17 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.1 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 99.07 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.0 | |
| PLN00106 | 323 | malate dehydrogenase | 98.96 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.79 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.77 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.72 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.68 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.59 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.55 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.47 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.45 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.44 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.4 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.28 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 98.27 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.26 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.26 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.23 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.22 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 98.22 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.99 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.98 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.94 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.87 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.84 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.82 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.81 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.73 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.69 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.69 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.67 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.67 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 97.65 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.61 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.59 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.52 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.48 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.47 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.46 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.46 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.46 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 97.44 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.43 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.4 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.38 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.36 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.35 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.35 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.34 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.32 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.32 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.29 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.24 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.24 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.17 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.17 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 97.16 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.16 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.11 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 97.1 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 97.1 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.09 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.07 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.06 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.04 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.03 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.02 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.02 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.0 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.99 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.96 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.93 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.92 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.91 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.89 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.87 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.86 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.86 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.84 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.78 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.77 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.74 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.73 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.73 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.72 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.69 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.69 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.69 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.68 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 96.68 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.6 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.58 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.54 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.52 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 96.49 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.48 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.47 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.47 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.46 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.45 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.45 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.43 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 96.41 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 96.4 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.4 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.38 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.37 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.35 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.3 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.3 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 96.29 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.28 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 96.28 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 96.27 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.22 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.2 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.2 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.16 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.15 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 96.14 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.12 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.12 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 96.11 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.07 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.06 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.06 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.05 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.05 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.04 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.04 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.03 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.98 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.96 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 95.94 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.94 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.92 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 95.92 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.91 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 95.91 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.88 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.82 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.77 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 95.75 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 95.72 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.71 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 95.69 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.65 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.65 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.65 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 95.64 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 95.63 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.63 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.61 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 95.61 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 95.6 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 95.6 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 95.58 | |
| PLN02928 | 347 | oxidoreductase family protein | 95.58 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 95.55 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.55 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.53 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 95.52 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.51 | |
| KOG2013 | 603 | consensus SMT3/SUMO-activating complex, catalytic | 95.46 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.45 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.39 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.37 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.37 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.36 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 95.34 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.29 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 95.28 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 95.28 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.24 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.21 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.21 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 95.2 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 95.19 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.19 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 95.16 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 95.16 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.16 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.14 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.13 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 95.08 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 95.05 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 95.04 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 95.03 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 95.02 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 94.98 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 94.94 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.93 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 94.93 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 94.93 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.92 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 94.87 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.86 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 94.86 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.83 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 94.82 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 94.82 |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-50 Score=358.39 Aligned_cols=309 Identities=28% Similarity=0.438 Sum_probs=270.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||+||||+|.+.+|++.|++|+++|+........+... .+.++++|+.|.+.+.++|++.+||.||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~--------~~~f~~gDi~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL--------QFKFYEGDLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc--------cCceEEeccccHHHHHHHHHhcCCCEEE
Confidence 68999999999999999999999999999999776544333211 1689999999999999999999999999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|+||...+..+..+|-.+++.|+.||.+|+++|++++++ +|||.||+.+||.....|+.|+.+. .|.++||.||++.|
T Consensus 73 HFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~-~~vFSStAavYG~p~~~PI~E~~~~-~p~NPYG~sKlm~E 150 (329)
T COG1087 73 HFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK-KFIFSSTAAVYGEPTTSPISETSPL-APINPYGRSKLMSE 150 (329)
T ss_pred ECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCC-EEEEecchhhcCCCCCcccCCCCCC-CCCCcchhHHHHHH
Confidence 999999999999999999999999999999999999987 9999999999999999999999987 69999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCC---------CCCcHHHHHHHHHcCCc-eeEEecC---CCCccccccccHHHH
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGR---------PDMAYFFFTRDIIRGKR-ITVYEAP---DGASVARDFTYIDDI 306 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~i~v~Dv 306 (424)
++++.+.+.++++++++|-+++.|.... .+.+++.++..++...+ +.+|... .++...||||||.|+
T Consensus 151 ~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DL 230 (329)
T COG1087 151 EILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDL 230 (329)
T ss_pred HHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHH
Confidence 9999999999999999999999985321 13456767666665444 5666321 357889999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHh
Q 042406 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQR 386 (424)
Q Consensus 307 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~ 386 (424)
|++|+.+++..... + ...+||+++|...|+.|+++.+++..|.+.+.+..+. +++|...++.|.+|+++
T Consensus 231 A~aH~~Al~~L~~~-g---------~~~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~R-R~GDpa~l~Ad~~kA~~ 299 (329)
T COG1087 231 ADAHVLALKYLKEG-G---------SNNIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAPR-RAGDPAILVADSSKARQ 299 (329)
T ss_pred HHHHHHHHHHHHhC-C---------ceeEEEccCCCceeHHHHHHHHHHHhCCcCceeeCCC-CCCCCceeEeCHHHHHH
Confidence 99999999887641 1 1169999999999999999999999999998887664 68999999999999999
Q ss_pred HcCCcccC-CHHHHHHHHHHHHHH
Q 042406 387 ELGYMPTT-DLETGLKKFVRWYLS 409 (424)
Q Consensus 387 ~LG~~p~~-~l~~~l~~~v~~~~~ 409 (424)
+|||+|++ +|+++++.+..|..+
T Consensus 300 ~Lgw~p~~~~L~~ii~~aw~W~~~ 323 (329)
T COG1087 300 ILGWQPTYDDLEDIIKDAWDWHQQ 323 (329)
T ss_pred HhCCCcccCCHHHHHHHHHHHhhh
Confidence 99999998 999999999999985
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=358.49 Aligned_cols=311 Identities=27% Similarity=0.429 Sum_probs=276.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|++|||||.||||+.+++.++++.. +|+.+|...= ..... ........++..++++|++|.+.+.++|++.++|+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTY--Agn~~-~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~ 77 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTY--AGNLE-NLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDA 77 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccc--cCCHH-HHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCe
Confidence 6799999999999999999999864 5788876431 11111 11223356799999999999999999999888899
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC--CCCCCCCCCCCCChHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKV--PFSEKDRTDQPASLYAATK 235 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~--~~~e~~~~~~~~~~Y~~sK 235 (424)
|+|.|+-.+++.+-.+|+..+++|+.||.+||+++++....-+|+++|+..|||..... .++|+++. .|.++|++||
T Consensus 78 VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~-~PsSPYSASK 156 (340)
T COG1088 78 VVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPY-NPSSPYSASK 156 (340)
T ss_pred EEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCC-CCCCCcchhh
Confidence 99999999999999999999999999999999999999865589999999999975543 68888866 9999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhh
Q 042406 236 KAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315 (424)
Q Consensus 236 ~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 315 (424)
+++..+++.+.+.+|++++|.|+++-|||...+..+++.++.+++.|++++++ |+|.+.|||+||+|-|+|+..++.
T Consensus 157 AasD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvY---GdG~~iRDWl~VeDh~~ai~~Vl~ 233 (340)
T COG1088 157 AASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVY---GDGLQIRDWLYVEDHCRAIDLVLT 233 (340)
T ss_pred hhHHHHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCcee---cCCcceeeeEEeHhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 899999999999999999999998
Q ss_pred hccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccc-----cccccCCCCCCcccccCChHHHHhHcCC
Q 042406 316 TAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE-----TKVLPLPRNGDVQFTHANISLAQRELGY 390 (424)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~-----~~~~~~~~~~~~~~~~~d~s~~~~~LG~ 390 (424)
+... |++|||+++...+--|+++.|.+.++...+ +.++. .+++...+..+|.+|++++|||
T Consensus 234 kg~~-------------GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~-DRpGHD~RYaid~~Ki~~eLgW 299 (340)
T COG1088 234 KGKI-------------GETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVE-DRPGHDRRYAIDASKIKRELGW 299 (340)
T ss_pred cCcC-------------CceEEeCCCccchHHHHHHHHHHHhCccccchhhheEecc-CCCCCccceeechHHHhhhcCC
Confidence 8653 389999999999999999999999998777 44443 5788888889999999999999
Q ss_pred cccCCHHHHHHHHHHHHHHHh
Q 042406 391 MPTTDLETGLKKFVRWYLSYY 411 (424)
Q Consensus 391 ~p~~~l~~~l~~~v~~~~~~~ 411 (424)
.|++++|+||+++++||+++.
T Consensus 300 ~P~~~fe~GlrkTv~WY~~N~ 320 (340)
T COG1088 300 RPQETFETGLRKTVDWYLDNE 320 (340)
T ss_pred CcCCCHHHHHHHHHHHHHhch
Confidence 999999999999999999853
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=371.08 Aligned_cols=319 Identities=28% Similarity=0.450 Sum_probs=258.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhh--hhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKG--LLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+++|+|+||||+||||++|+++|+++|++|++++|............... .....++.++.+|+.|.+.+.++++++
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 356789999999999999999999999999999998654322222111110 111246889999999999999999865
Q ss_pred CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 042406 154 AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAA 233 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~ 233 (424)
|+|||+|+.........++...+++|+.|+.+++++|++.+++ +|||+||+++||.....+..|+++. .|.+.|+.
T Consensus 92 --d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~e~~~~-~p~~~Y~~ 167 (348)
T PRK15181 92 --DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDLPKIEERIG-RPLSPYAV 167 (348)
T ss_pred --CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCCCCCCCCCC-CCCChhhH
Confidence 9999999987666666778889999999999999999999876 9999999999997666666776654 67889999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----CcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHH
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD----MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKG 309 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 309 (424)
||.++|.+++.+.+.++++++++||++||||+..++ .+++.++..++.++++.++ +++++.++|+|++|+|++
T Consensus 168 sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~---g~g~~~rd~i~v~D~a~a 244 (348)
T PRK15181 168 TKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYIN---GDGSTSRDFCYIENVIQA 244 (348)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEe---CCCCceEeeEEHHHHHHH
Confidence 999999999998888899999999999999976543 4677888888888888877 688999999999999999
Q ss_pred HHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccc------ccccccCCCCCCcccccCChHH
Q 042406 310 CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKA------ETKVLPLPRNGDVQFTHANISL 383 (424)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~------~~~~~~~~~~~~~~~~~~d~s~ 383 (424)
++.++...... ..+++||+++++.+|++|+++.+.+.++... .... ...+..+.....+|.+|
T Consensus 245 ~~~~~~~~~~~----------~~~~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~k 313 (348)
T PRK15181 245 NLLSATTNDLA----------SKNKVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIY-KDFRDGDVKHSQADITK 313 (348)
T ss_pred HHHHHhccccc----------CCCCEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCccc-CCCCCCcccccccCHHH
Confidence 99877543210 1237999999999999999999999987421 1111 11234455567899999
Q ss_pred HHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 384 AQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 384 ~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
++++|||.|+++++|+|+++++|++.+.+
T Consensus 314 ~~~~lGw~P~~sl~egl~~~~~w~~~~~~ 342 (348)
T PRK15181 314 IKTFLSYEPEFDIKEGLKQTLKWYIDKHS 342 (348)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999987644
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=339.95 Aligned_cols=319 Identities=45% Similarity=0.674 Sum_probs=282.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+++||||||+||||+|.+.+|+++|+.|+++|...+...+.....+.......++.++++|++|.++++++|+..++|.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 57899999999999999999999999999999999888887777776655568999999999999999999999999999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
+|.|+...+.++..+|-.++.+|+.||.+|++.|+++++ +.+|+.||+.+||.....|++|+++...|.++||.+|.+.
T Consensus 82 ~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~-~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~tK~~i 160 (343)
T KOG1371|consen 82 MHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNV-KALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAI 160 (343)
T ss_pred EeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCC-ceEEEecceeeecCcceeeccCcCCCCCCCCcchhhhHHH
Confidence 999999999999999999999999999999999999995 5999999999999999999999999867999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccC--CCCCCCCcHHHHH----------------HHHHcCCceeEEecCCCCcccccc
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYG--PWGRPDMAYFFFT----------------RDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G--~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
|.++..+++.++.+++.||.++++| |++..++....+. ....-|.+.... +++..+++
T Consensus 161 E~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~----dgt~vrdy 236 (343)
T KOG1371|consen 161 EEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTI----DGTIVRDY 236 (343)
T ss_pred HHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCccccc----CCCeeecc
Confidence 9999999999899999999999999 6554332221111 111124444442 56899999
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHAN 380 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d 380 (424)
+|+-|.|+.++.+++..... .+.++||++.+...++.+|+..+++.+|.+.+...++. +.++...++.+
T Consensus 237 i~v~Dla~~h~~al~k~~~~----------~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~-R~gdv~~~ya~ 305 (343)
T KOG1371|consen 237 IHVLDLADGHVAALGKLRGA----------AEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPR-RNGDVAFVYAN 305 (343)
T ss_pred eeeEehHHHHHHHhhccccc----------hheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCC-CCCCceeeeeC
Confidence 99999999999999887642 33479999999999999999999999999999999998 99999999999
Q ss_pred hHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 381 ISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 381 ~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
.+++.++|||+|.+++++++++++.|+.++...
T Consensus 306 ~~~a~~elgwk~~~~iee~c~dlw~W~~~np~g 338 (343)
T KOG1371|consen 306 PSKAQRELGWKAKYGLQEMLKDLWRWQKQNPSG 338 (343)
T ss_pred hHHHHHHhCCccccCHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999887654
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=356.65 Aligned_cols=306 Identities=27% Similarity=0.388 Sum_probs=249.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
..|+|+||||+||||++|+++|+++|++|++++|.......... ......+++++.+|+.+.. +. ++|+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~----~~~~~~~~~~~~~Di~~~~-----~~--~~D~ 187 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLV----HLFGNPRFELIRHDVVEPI-----LL--EVDQ 187 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhh----hhccCCceEEEECcccccc-----cc--CCCE
Confidence 46899999999999999999999999999999986432111111 1112346889999997753 33 4599
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC----CCCCCChHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR----TDQPASLYAA 233 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~----~~~~~~~Y~~ 233 (424)
|||+|+.........++...+.+|+.|+.+++++|++.+. +||++||.+|||.....+.+|+.. +..|.+.|+.
T Consensus 188 ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~ 265 (436)
T PLN02166 188 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDE 265 (436)
T ss_pred EEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHH
Confidence 9999998665444557788999999999999999999874 899999999999765556766631 3356788999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--CCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHH
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP--DMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 311 (424)
+|.++|.+++.+.+.++++++++||++||||+... +..+..++..++.++++.++ +++++.++|+|++|+|++++
T Consensus 266 SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~---g~g~~~rdfi~V~Dva~ai~ 342 (436)
T PLN02166 266 GKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVY---GDGKQTRSFQYVSDLVDGLV 342 (436)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEe---CCCCeEEeeEEHHHHHHHHH
Confidence 99999999999998889999999999999997542 34567788889999988877 67889999999999999999
Q ss_pred HHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCc
Q 042406 312 AGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYM 391 (424)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~ 391 (424)
.+++... +++||+++++.+|+.|+++.+.+.+|.+..+...+. ...+......|++|++++|||+
T Consensus 343 ~~~~~~~--------------~giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~-~~~~~~~~~~d~~Ka~~~LGw~ 407 (436)
T PLN02166 343 ALMEGEH--------------VGPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPN-TADDPHKRKPDISKAKELLNWE 407 (436)
T ss_pred HHHhcCC--------------CceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCC-CCCCccccccCHHHHHHHcCCC
Confidence 9886432 168999999999999999999999998766655543 3445566678999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhccC
Q 042406 392 PTTDLETGLKKFVRWYLSYYNSA 414 (424)
Q Consensus 392 p~~~l~~~l~~~v~~~~~~~~~~ 414 (424)
|+++++++|+++++|++....+.
T Consensus 408 P~~sl~egl~~~i~~~~~~~~~~ 430 (436)
T PLN02166 408 PKISLREGLPLMVSDFRNRILNE 430 (436)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999998866554
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=360.63 Aligned_cols=324 Identities=24% Similarity=0.310 Sum_probs=250.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhh-------------HHHHH-hhhhccCCeEEEEcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETS-------------LKKAR-KGLLERAGVFVIDAD 139 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-------------~~~~~-~~~~~~~~v~~~~~D 139 (424)
+...++|+||||||+||||++|+++|+++|++|++++|........ ..... .......+++++.+|
T Consensus 42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~D 121 (442)
T PLN02572 42 SSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGD 121 (442)
T ss_pred CccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECC
Confidence 4457889999999999999999999999999999998643211000 00000 001112468999999
Q ss_pred CCCHHHHHHHhhccCccEEEEcccccCchhhccCh---HHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC
Q 042406 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNP---NSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKV 216 (424)
Q Consensus 140 l~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~---~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~ 216 (424)
++|.+.+.+++++.++|+|||+|+.........++ +..+++|+.|+.+++++|++.+++++||++||.++||... .
T Consensus 122 l~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~ 200 (442)
T PLN02572 122 ICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-I 200 (442)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-C
Confidence 99999999999987889999999875544444333 4567899999999999999988755899999999999542 1
Q ss_pred CCCC-----------CC--CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC--------------
Q 042406 217 PFSE-----------KD--RTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD-------------- 269 (424)
Q Consensus 217 ~~~e-----------~~--~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~-------------- 269 (424)
+++| ++ .+..|.+.|+.||.++|.+++.+++.+|++++++||++||||+....
T Consensus 201 ~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~ 280 (442)
T PLN02572 201 DIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDG 280 (442)
T ss_pred CCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCccc
Confidence 2222 21 13367789999999999999999998999999999999999985431
Q ss_pred ---CcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccH
Q 042406 270 ---MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPV 346 (424)
Q Consensus 270 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 346 (424)
..++.++..++.++++.++ +++++.++|+||+|+|++++.+++..... ....+||+++ +.+|+
T Consensus 281 ~~~~~i~~~~~~~~~g~~i~v~---g~G~~~Rdfi~V~Dva~a~~~al~~~~~~----------g~~~i~Nigs-~~~si 346 (442)
T PLN02572 281 VFGTALNRFCVQAAVGHPLTVY---GKGGQTRGFLDIRDTVRCIEIAIANPAKP----------GEFRVFNQFT-EQFSV 346 (442)
T ss_pred chhhHHHHHHHHHhcCCCceec---CCCCEEECeEEHHHHHHHHHHHHhChhhc----------CceeEEEeCC-CceeH
Confidence 3455667778888888777 68899999999999999999998864211 0125899986 67999
Q ss_pred HHHHHHHHHH---hCcccccccccCC-CCCCcccccCChHHHHhHcCCcccC---CHHHHHHHHHHHHHHHhcc
Q 042406 347 SRLVSLLEKI---LKVKAETKVLPLP-RNGDVQFTHANISLAQRELGYMPTT---DLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 347 ~el~~~i~~~---~g~~~~~~~~~~~-~~~~~~~~~~d~s~~~~~LG~~p~~---~l~~~l~~~v~~~~~~~~~ 413 (424)
.|+++++.+. +|.+..+...+.+ +..+......|.+|++ +|||+|++ ++++++.++++||++.-..
T Consensus 347 ~el~~~i~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LGw~p~~~~~~l~~~l~~~~~~~~~~~~~ 419 (442)
T PLN02572 347 NELAKLVTKAGEKLGLDVEVISVPNPRVEAEEHYYNAKHTKLC-ELGLEPHLLSDSLLDSLLNFAVKYKDRVDT 419 (442)
T ss_pred HHHHHHHHHHHHhhCCCCCeeeCCCCcccccccccCccHHHHH-HcCCCCCCcHHHHHHHHHHHHHHHHhhcch
Confidence 9999999999 8877666555433 2333446678999997 59999998 8999999999999865544
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=351.90 Aligned_cols=303 Identities=26% Similarity=0.395 Sum_probs=246.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++|+||||||+||||++|++.|+++|++|++++|......... .......+++++.+|+.+.. +. ++|+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~----~~~~~~~~~~~i~~D~~~~~-----l~--~~D~ 186 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENV----MHHFSNPNFELIRHDVVEPI-----LL--EVDQ 186 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhh----hhhccCCceEEEECCccChh-----hc--CCCE
Confidence 5699999999999999999999999999999987533211111 11123457889999998753 33 3599
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC----CCCCCChHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR----TDQPASLYAA 233 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~----~~~~~~~Y~~ 233 (424)
|||+|+...+.....++...+++|+.|+.+++++|++.+. +||++||+.+||.....+..|+.+ +..+.+.|+.
T Consensus 187 ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~ 264 (442)
T PLN02206 187 IYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDE 264 (442)
T ss_pred EEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECChHHhCCCCCCCCCccccccCCCCCccchHHH
Confidence 9999998765555567888999999999999999999874 899999999998765556666531 2245688999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC--CCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHH
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR--PDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 311 (424)
+|.++|.++..+.+.++++++++||+++|||+.. ....++.++..++.++++.++ +++++.++|+|++|+|++++
T Consensus 265 SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~---g~G~~~rdfi~V~Dva~ai~ 341 (442)
T PLN02206 265 GKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY---GDGKQTRSFQFVSDLVEGLM 341 (442)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEe---CCCCEEEeEEeHHHHHHHHH
Confidence 9999999999998888999999999999999753 234566788888888888877 67889999999999999999
Q ss_pred HHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCc
Q 042406 312 AGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYM 391 (424)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~ 391 (424)
.+++... +++||+++++.+|+.|+++.+.+.++.+..+...+. ...+......|++|++++|||+
T Consensus 342 ~a~e~~~--------------~g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~-~~~~~~~~~~d~sKa~~~LGw~ 406 (442)
T PLN02206 342 RLMEGEH--------------VGPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPN-TEDDPHKRKPDITKAKELLGWE 406 (442)
T ss_pred HHHhcCC--------------CceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCC-CCCCccccccCHHHHHHHcCCC
Confidence 9886432 158999999999999999999999987766554443 2334455678999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHh
Q 042406 392 PTTDLETGLKKFVRWYLSYY 411 (424)
Q Consensus 392 p~~~l~~~l~~~v~~~~~~~ 411 (424)
|+++++|+|+++++|+++..
T Consensus 407 P~~~l~egl~~~~~~~~~~~ 426 (442)
T PLN02206 407 PKVSLRQGLPLMVKDFRQRV 426 (442)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998743
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=348.76 Aligned_cols=313 Identities=23% Similarity=0.273 Sum_probs=248.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchh-hhHHHHHhh--hhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYE-TSLKKARKG--LLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+||||||+||||++|+++|+++|++|++++|+.+... ......... .....+++++.+|++|.+.+.+++++.++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999999764211 111111000 001246899999999999999999988889
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ--PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~--~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
+|||+|+.........++...+++|+.|+.+++++|++.+.. ++||++||.++||.....+.+|+.+. .|.+.|+.|
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 159 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPF-YPRSPYAAA 159 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCC-CCCChhHHH
Confidence 999999986654455566788899999999999999988754 38999999999997655677777765 788999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC---cHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHH
Q 042406 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDM---AYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 311 (424)
|.++|.+++.+++++++++++.|+.++|||+...+. .+..++..+..+++..++. +++++.++|+||+|+|++++
T Consensus 160 K~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~g~~~rd~i~V~D~a~a~~ 237 (343)
T TIGR01472 160 KLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYL--GNLDAKRDWGHAKDYVEAMW 237 (343)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceee--CCCccccCceeHHHHHHHHH
Confidence 999999999999888999999999999999743322 2334455566676433221 67889999999999999999
Q ss_pred HHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccc-------------------cccC-CCC
Q 042406 312 AGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETK-------------------VLPL-PRN 371 (424)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~-------------------~~~~-~~~ 371 (424)
.+++.... ++|||++++++|+.|+++.+.+.+|.+..+. ..+. .++
T Consensus 238 ~~~~~~~~--------------~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (343)
T TIGR01472 238 LMLQQDKP--------------DDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFRP 303 (343)
T ss_pred HHHhcCCC--------------ccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccCC
Confidence 99875321 5799999999999999999999999654321 1111 234
Q ss_pred CCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHH
Q 042406 372 GDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409 (424)
Q Consensus 372 ~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~ 409 (424)
.+......|++|++++|||+|+++++|+|+++++|+++
T Consensus 304 ~~~~~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 304 TEVDLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred CccchhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 55666778999999999999999999999999999874
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=347.92 Aligned_cols=313 Identities=26% Similarity=0.398 Sum_probs=248.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEE-EeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLG-LDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+|+||||||+||||++|++.|+++|+.|++ ++|.... .. ..... ......++.++.+|++|.+++.+++++.++|+
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~ 77 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA-GN-LMSLA-PVAQSERFAFEKVDICDRAELARVFTEHQPDC 77 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccc-cc-hhhhh-hcccCCceEEEECCCcChHHHHHHHhhcCCCE
Confidence 368999999999999999999999987554 4543221 11 01111 11122468899999999999999999767899
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCCcccCCCC--CCCCCCCCCCCC
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS---------DPQPAIVWASSSSVYGVNK--KVPFSEKDRTDQ 226 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~---------~~~~~~v~~SS~~vyg~~~--~~~~~e~~~~~~ 226 (424)
|||+||.........+++..+++|+.|+.+++++|++. ++ ++||++||.++||... ..+++|+.+. .
T Consensus 78 Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~-~~~i~~SS~~vyg~~~~~~~~~~E~~~~-~ 155 (355)
T PRK10217 78 VMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSA-FRFHHISTDEVYGDLHSTDDFFTETTPY-A 155 (355)
T ss_pred EEECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCc-eEEEEecchhhcCCCCCCCCCcCCCCCC-C
Confidence 99999986654445567889999999999999999863 33 4899999999998532 3457776654 6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHH
Q 042406 227 PASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDI 306 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 306 (424)
|.+.|+.||.++|.+++.++++++++++++||++||||+..++.+++.++..+..+.++.++ +++++.++|+|++|+
T Consensus 156 p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~D~ 232 (355)
T PRK10217 156 PSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVY---GNGQQIRDWLYVEDH 232 (355)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEe---CCCCeeeCcCcHHHH
Confidence 78999999999999999998888999999999999999876666677777888888887776 678999999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccccc-----------ccCCCCCCcc
Q 042406 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKV-----------LPLPRNGDVQ 375 (424)
Q Consensus 307 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~-----------~~~~~~~~~~ 375 (424)
|+++..+++... .+++||+++++++|+.|+++.+.+.++...+... ....++.+..
T Consensus 233 a~a~~~~~~~~~-------------~~~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (355)
T PRK10217 233 ARALYCVATTGK-------------VGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDL 299 (355)
T ss_pred HHHHHHHHhcCC-------------CCCeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCc
Confidence 999999987532 1279999999999999999999999885322100 0111233445
Q ss_pred cccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 376 FTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 376 ~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
.+.+|++|++++|||.|+++++|+|+++++|++...+
T Consensus 300 ~~~~d~~k~~~~lg~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 300 RYAIDASKIARELGWLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred ccccCHHHHHHhcCCCCcCcHHHHHHHHHHHHHhCHH
Confidence 5788999999999999999999999999999988644
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=344.32 Aligned_cols=320 Identities=22% Similarity=0.241 Sum_probs=254.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhh-hHHHHHh-hhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET-SLKKARK-GLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~-~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+.++|+||||||+||||++|+++|+++|++|++++|..+.... ....... ......++.++.+|++|.+.+.++++..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 82 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI 82 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence 4568899999999999999999999999999999986543211 1111110 0111246899999999999999999988
Q ss_pred CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCC----CeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ----PAIVWASSSSVYGVNKKVPFSEKDRTDQPAS 229 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~----~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~ 229 (424)
++|+|||||+.........+++..+++|+.|+.+++++|++.+.. .+||++||+++||.... +++|+++. .|.+
T Consensus 83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~~~~-~p~~ 160 (340)
T PLN02653 83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSETTPF-HPRS 160 (340)
T ss_pred CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCCCCC-CCCC
Confidence 889999999986655455667788899999999999999988764 38999999999997654 77777755 7889
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCc---HHHHHHHHHcCCceeEEecCCCCccccccccHHHH
Q 042406 230 LYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMA---YFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDI 306 (424)
Q Consensus 230 ~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 306 (424)
.|+.||.++|.+++.+++++++.++..|+.++|||+...+.. +..++..+..+.+..++. +++++.++|+|++|+
T Consensus 161 ~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~g~~~rd~i~v~D~ 238 (340)
T PLN02653 161 PYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFL--GNLDASRDWGFAGDY 238 (340)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEe--CCCcceecceeHHHH
Confidence 999999999999999998889999999999999997544322 233445566776655432 678899999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccc--ccccccC-CCCCCcccccCChHH
Q 042406 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKA--ETKVLPL-PRNGDVQFTHANISL 383 (424)
Q Consensus 307 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~--~~~~~~~-~~~~~~~~~~~d~s~ 383 (424)
|++++.+++.... +.||+++++++|+.|+++.+.+.+|.+. .....+. ..+.+.....+|++|
T Consensus 239 a~a~~~~~~~~~~--------------~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k 304 (340)
T PLN02653 239 VEAMWLMLQQEKP--------------DDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASK 304 (340)
T ss_pred HHHHHHHHhcCCC--------------CcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHH
Confidence 9999999985321 5799999999999999999999998642 2222221 234556667789999
Q ss_pred HHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 384 AQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 384 ~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
++++|||+|+++++|+|+++++|+++....
T Consensus 305 ~~~~lgw~p~~~l~~gi~~~~~~~~~~~~~ 334 (340)
T PLN02653 305 AREVLGWKPKVGFEQLVKMMVDEDLELAKR 334 (340)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999865543
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=350.90 Aligned_cols=318 Identities=22% Similarity=0.325 Sum_probs=243.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
+.+.|+||||||+||||++|+++|+++ |++|++++|+.+....... . .......+++++.+|+.|.+.+.++++++
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~-~-~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~- 87 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLE-P-DTVPWSGRIQFHRINIKHDSRLEGLIKMA- 87 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhc-c-ccccCCCCeEEEEcCCCChHHHHHHhhcC-
Confidence 345688999999999999999999999 5999999986432111000 0 00001246999999999999999999875
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC----------
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT---------- 224 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~---------- 224 (424)
|+|||+|+.........++...+..|+.++.+++++|++.+ ++||++||.++||.....+..|+.+.
T Consensus 88 -d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~ 164 (386)
T PLN02427 88 -DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLK 164 (386)
T ss_pred -CEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEeeeeeeCCCcCCCCCccccccccccccccc
Confidence 99999999865543445566778899999999999999876 49999999999996433222222110
Q ss_pred -----------CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC-----------CCcHHHHHHHHHcC
Q 042406 225 -----------DQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP-----------DMAYFFFTRDIIRG 282 (424)
Q Consensus 225 -----------~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~-----------~~~~~~~~~~~~~~ 282 (424)
..+.+.|+.||.++|.++..+++.++++++++||++||||+... ..++..++..++.+
T Consensus 165 e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 244 (386)
T PLN02427 165 EDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLLRR 244 (386)
T ss_pred ccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHhcC
Confidence 12346799999999999999888889999999999999997531 12344566777888
Q ss_pred CceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC-CcccHHHHHHHHHHHhCccc
Q 042406 283 KRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT-TPVPVSRLVSLLEKILKVKA 361 (424)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~el~~~i~~~~g~~~ 361 (424)
+++.++ +++++.++||||+|+|++++.++++... ..+++||++++ +.+|+.|+++.+.+.+|...
T Consensus 245 ~~~~~~---g~g~~~r~~i~V~Dva~ai~~al~~~~~-----------~~g~~yni~~~~~~~s~~el~~~i~~~~g~~~ 310 (386)
T PLN02427 245 EPLKLV---DGGQSQRTFVYIKDAIEAVLLMIENPAR-----------ANGHIFNVGNPNNEVTVRQLAEMMTEVYAKVS 310 (386)
T ss_pred CCeEEE---CCCCceECcEeHHHHHHHHHHHHhCccc-----------ccCceEEeCCCCCCccHHHHHHHHHHHhcccc
Confidence 888776 5678889999999999999999886431 12379999987 58999999999999998521
Q ss_pred c-----cc--cccC-----CCCCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 362 E-----TK--VLPL-----PRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 362 ~-----~~--~~~~-----~~~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
. .. ..+. +...+......|.+|++++|||+|+++++++|+++++|+++.+-.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~~~~ 374 (386)
T PLN02427 311 GEPALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKTYAE 374 (386)
T ss_pred ccccccccccccCcccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHHHHH
Confidence 0 11 0110 011344566789999999999999999999999999999998764
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=343.14 Aligned_cols=320 Identities=24% Similarity=0.251 Sum_probs=253.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+++|+||||||+||||+++++.|+++|++|++++|+........... . ...++.++.+|++|.+++.+++++.++|
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~--~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~d 77 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELL--N--LAKKIEDHFGDIRDAAKLRKAIAEFKPE 77 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHH--h--hcCCceEEEccCCCHHHHHHHHhhcCCC
Confidence 35789999999999999999999999999999998765322211111 1 1236778999999999999999988899
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-CCCCCCCCCCCCCCChHHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNK-KVPFSEKDRTDQPASLYAATK 235 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~-~~~~~e~~~~~~~~~~Y~~sK 235 (424)
+|||+||.........++...+++|+.++.+++++|++.+..++||++||..+|+... ..++.|+++. .|.+.|+.||
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~-~p~~~Y~~sK 156 (349)
T TIGR02622 78 IVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPL-GGHDPYSSSK 156 (349)
T ss_pred EEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCC-CCCCcchhHH
Confidence 9999999765555566778899999999999999998876334999999999998643 2356666544 6788999999
Q ss_pred HHHHHHHHHHHHHh-------CCcEEEEEeccccCCCCC-CCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHH
Q 042406 236 KAGEAIAHAYNHIY-------GLSITGLRFFTVYGPWGR-PDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIV 307 (424)
Q Consensus 236 ~~~e~~~~~~~~~~-------~i~~~~vrp~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 307 (424)
.++|.+++.+++++ +++++++||+++|||+.. .+.+++.++..+..++++.+ +++++.++|+|++|+|
T Consensus 157 ~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~----~~g~~~rd~i~v~D~a 232 (349)
T TIGR02622 157 ACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVII----RNPDATRPWQHVLEPL 232 (349)
T ss_pred HHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeEE----CCCCcccceeeHHHHH
Confidence 99999999988764 899999999999999753 34567788888888888776 4678999999999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC--CcccHHHHHHHHHHHhCc-ccccccccC-CCCCCcccccCChHH
Q 042406 308 KGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT--TPVPVSRLVSLLEKILKV-KAETKVLPL-PRNGDVQFTHANISL 383 (424)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~el~~~i~~~~g~-~~~~~~~~~-~~~~~~~~~~~d~s~ 383 (424)
++++.+++....... ..+++|||+++ +++++.|+++.+.+.++. +..+...+. .+..+......|.+|
T Consensus 233 ~a~~~~~~~~~~~~~--------~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 304 (349)
T TIGR02622 233 SGYLLLAEKLFTGQA--------EFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSK 304 (349)
T ss_pred HHHHHHHHHHhhcCc--------cccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHH
Confidence 999988875321100 11379999974 689999999999987763 333322211 123444556789999
Q ss_pred HHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 384 AQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 384 ~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
++++|||+|+++++++|+++++|+.+.-+.
T Consensus 305 ~~~~lgw~p~~~l~~gi~~~i~w~~~~~~~ 334 (349)
T TIGR02622 305 ARTLLGWHPRWGLEEAVSRTVDWYKAWLRG 334 (349)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999887554
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=339.25 Aligned_cols=310 Identities=24% Similarity=0.354 Sum_probs=246.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCC-CHHHHHHHhhccCcc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN-DKSLLDKIFNVVAFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~v~~~~~~~~~d 156 (424)
+|+||||||+||||++|+++|+++ |++|++++|+.... .......+++++.+|+. +.+.+.++++++ |
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~--------~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--d 70 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRL--------GDLVNHPRMHFFEGDITINKEWIEYHVKKC--D 70 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHH--------HHhccCCCeEEEeCCCCCCHHHHHHHHcCC--C
Confidence 478999999999999999999987 69999999843210 01112356899999998 778888888855 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC------CCCCCh
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT------DQPASL 230 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~------~~~~~~ 230 (424)
+|||+|+.........+++..+++|+.++.+++++|++.+ . +|||+||+.+||.....++.|++++ ..|.+.
T Consensus 71 ~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~-~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~ 148 (347)
T PRK11908 71 VILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWI 148 (347)
T ss_pred EEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-C-eEEEEecceeeccCCCcCcCccccccccCcCCCccch
Confidence 9999999866555567788899999999999999999886 4 9999999999997555566666532 245678
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--------CCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 231 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP--------DMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
|+.+|.++|.+++.++..++++++++||+++|||+... ..+++.++..+..+.++.++ +++++.++|+|
T Consensus 149 Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~g~~~r~~i~ 225 (347)
T PRK11908 149 YACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLV---DGGSQKRAFTD 225 (347)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEe---cCCceeecccc
Confidence 99999999999999988889999999999999997431 23566788888889888776 56789999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC-CcccHHHHHHHHHHHhCcccccc-------cccCCC----
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT-TPVPVSRLVSLLEKILKVKAETK-------VLPLPR---- 370 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~el~~~i~~~~g~~~~~~-------~~~~~~---- 370 (424)
++|++++++.+++.+... ..+++||++++ ..+|+.|+++.+.+.++....+. ....+.
T Consensus 226 v~D~a~a~~~~~~~~~~~----------~~g~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (347)
T PRK11908 226 IDDGIDALMKIIENKDGV----------ASGKIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYY 295 (347)
T ss_pred HHHHHHHHHHHHhCcccc----------CCCCeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhcc
Confidence 999999999998864310 12379999986 57999999999999998543321 111111
Q ss_pred ---CCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 371 ---NGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 371 ---~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
..+......|.+|+++.|||+|+++++++|+++++|++++...
T Consensus 296 ~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~~~ 341 (347)
T PRK11908 296 GKGYQDVQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGHVAE 341 (347)
T ss_pred CcCcchhccccCChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 1123345578999999999999999999999999999876544
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=336.03 Aligned_cols=313 Identities=26% Similarity=0.414 Sum_probs=244.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCe-EEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
|+||||||+||||++|+++|+++|+. |+++++....... .... ......+++++.+|++|.+++.+++++.++|+|
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNL--ESLA-DVSDSERYVFEHADICDRAELDRIFAQHQPDAV 77 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchH--HHHH-hcccCCceEEEEecCCCHHHHHHHHHhcCCCEE
Confidence 57999999999999999999999976 5556653311110 1111 111124678899999999999999987778999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc--------CCCCeEEEecCCcccCCCCC----------CCCCC
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS--------DPQPAIVWASSSSVYGVNKK----------VPFSE 220 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~--------~~~~~~v~~SS~~vyg~~~~----------~~~~e 220 (424)
||+||.........+++..+++|+.|+.+++++|++. +..++||++||.++||.... .+++|
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E 157 (352)
T PRK10084 78 MHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTE 157 (352)
T ss_pred EECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccc
Confidence 9999976543344567889999999999999999874 11238999999999985311 13556
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
+++. .|.+.|+.||.++|.+++.+++.++++++++||+.||||+.....+++.++..+..+.++.++ +++++.++|
T Consensus 158 ~~~~-~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~ 233 (352)
T PRK10084 158 TTAY-APSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRDW 233 (352)
T ss_pred cCCC-CCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEe---CCCCeEEee
Confidence 6554 788999999999999999998888999999999999999875555677777778888877776 678899999
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccc------c-ccCCCCCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETK------V-LPLPRNGD 373 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~------~-~~~~~~~~ 373 (424)
+|++|+|++++.+++... .+++||++++++.++.|+++.+.+.++...+.. . .......+
T Consensus 234 v~v~D~a~a~~~~l~~~~-------------~~~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~ 300 (352)
T PRK10084 234 LYVEDHARALYKVVTEGK-------------AGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGH 300 (352)
T ss_pred EEHHHHHHHHHHHHhcCC-------------CCceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCCC
Confidence 999999999998887532 127999999999999999999999998532211 0 01112333
Q ss_pred cccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 374 VQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 374 ~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
.....+|++|++++|||+|+++++++|+++++|++++..
T Consensus 301 ~~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~ 339 (352)
T PRK10084 301 DRRYAIDASKISRELGWKPQETFESGIRKTVEWYLANTE 339 (352)
T ss_pred CceeeeCHHHHHHHcCCCCcCCHHHHHHHHHHHHHhCHH
Confidence 445678999999999999999999999999999998643
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=361.40 Aligned_cols=313 Identities=22% Similarity=0.338 Sum_probs=250.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH-HHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL-LDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-v~~~~~~~~ 154 (424)
.++|+||||||+||||++|+++|+++ |++|++++|...... ......+++++.+|++|.+. ++++++++
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~--------~~~~~~~~~~~~gDl~d~~~~l~~~l~~~- 383 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAIS--------RFLGHPRFHFVEGDISIHSEWIEYHIKKC- 383 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhh--------hhcCCCceEEEeccccCcHHHHHHHhcCC-
Confidence 36789999999999999999999986 799999999653211 11123478999999998655 57777754
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC------CCCC
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT------DQPA 228 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~------~~~~ 228 (424)
|+|||+||...+.....+++..+++|+.++.+++++|++.+ ++|||+||+++||.....+++|+++. ..|.
T Consensus 384 -D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~ 460 (660)
T PRK08125 384 -DVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN--KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQR 460 (660)
T ss_pred -CEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC--CeEEEEcchhhcCCCCCCCcCccccccccCCCCCCc
Confidence 99999999876655566778899999999999999999987 48999999999997555567776542 1345
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--------CCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 229 SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP--------DMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
+.|+.||.++|.+++.+.+.++++++++||+++|||+... ...++.++..+..++++.++ +++++.++|
T Consensus 461 s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~---g~g~~~rd~ 537 (660)
T PRK08125 461 WIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLV---DGGKQKRCF 537 (660)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEe---CCCceeece
Confidence 6899999999999999988889999999999999997532 24567788888888888776 678899999
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC-cccHHHHHHHHHHHhCcccccccccCCC---------
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT-PVPVSRLVSLLEKILKVKAETKVLPLPR--------- 370 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~s~~el~~~i~~~~g~~~~~~~~~~~~--------- 370 (424)
+|++|+|++++.++++.... ..+++||+++++ .+|++|+++.+.+.+|.+......+...
T Consensus 538 i~v~Dva~a~~~~l~~~~~~----------~~g~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 607 (660)
T PRK08125 538 TDIRDGIEALFRIIENKDNR----------CDGQIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESSS 607 (660)
T ss_pred eeHHHHHHHHHHHHhccccc----------cCCeEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCcccccccccccc
Confidence 99999999999998764211 123799999985 7999999999999998543211111110
Q ss_pred -----CCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhccC
Q 042406 371 -----NGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSA 414 (424)
Q Consensus 371 -----~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~~ 414 (424)
..+......|++|++++|||.|+++++|+|+++++|++++++..
T Consensus 608 ~~~~~~~~~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~~~ 656 (660)
T PRK08125 608 YYGKGYQDVEHRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVDLT 656 (660)
T ss_pred ccccccccccccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhccccc
Confidence 12334556899999999999999999999999999999887753
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=331.59 Aligned_cols=326 Identities=27% Similarity=0.401 Sum_probs=252.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
++.+|+|+||||+||||++|+++|+++|++|++++|................ ....++.++.+|++|.+.+.+++++.+
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 4567899999999999999999999999999999985433222111111110 112468899999999999999998777
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
+|+|||+|+.........++...+++|+.++.+++++|++.+++ +||++||+++||.....+++|+.+. .+.+.|+.+
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~vyg~~~~~~~~E~~~~-~~~~~Y~~s 159 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSSSATVYGQPEEVPCTEEFPL-SATNPYGRT 159 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccHHHhCCCCCCCCCCCCCC-CCCCHHHHH
Confidence 89999999975543344567889999999999999999988875 9999999999987666678887755 678999999
Q ss_pred HHHHHHHHHHHHHH-hCCcEEEEEeccccCCCCC----------CCCcHHHHHHHHHcCC--ceeEEec---CCCCcccc
Q 042406 235 KKAGEAIAHAYNHI-YGLSITGLRFFTVYGPWGR----------PDMAYFFFTRDIIRGK--RITVYEA---PDGASVAR 298 (424)
Q Consensus 235 K~~~e~~~~~~~~~-~~i~~~~vrp~~v~G~~~~----------~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~ 298 (424)
|.++|.+++.+... .+++++++|++++||++.. ...+.+ ++..+..++ .+.++.. .+++.+.+
T Consensus 160 K~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 238 (352)
T PLN02240 160 KLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMP-YVQQVAVGRRPELTVFGNDYPTKDGTGVR 238 (352)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHH-HHHHHHhCCCCceEEeCCCCCCCCCCEEE
Confidence 99999999988754 5899999999999997431 112222 344455443 3444421 12578999
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCccccc
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTH 378 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 378 (424)
+|+|++|+|++++.+++....... ..+++||+++++++|+.|+++.+.+.+|.+.++...+. ...+.....
T Consensus 239 ~~i~v~D~a~a~~~a~~~~~~~~~--------~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~~~~~~ 309 (352)
T PLN02240 239 DYIHVMDLADGHIAALRKLFTDPD--------IGCEAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAPR-RPGDAEEVY 309 (352)
T ss_pred eeEEHHHHHHHHHHHHhhhhhccC--------CCCceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCCC-CCCChhhhh
Confidence 999999999999988875421111 22379999999999999999999999998766554442 344445566
Q ss_pred CChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 379 ANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 379 ~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
.|++|++++|||+|+++++++|+++++|++++...
T Consensus 310 ~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~~ 344 (352)
T PLN02240 310 ASTEKAEKELGWKAKYGIDEMCRDQWNWASKNPYG 344 (352)
T ss_pred cCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCccc
Confidence 89999999999999999999999999999987644
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=308.64 Aligned_cols=309 Identities=26% Similarity=0.421 Sum_probs=265.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
...+++|+||||+||||+||++.|..+||.|+++|......... ...-.....++.+.-|+..+ ++.++
T Consensus 24 p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n----~~~~~~~~~fel~~hdv~~p-----l~~ev-- 92 (350)
T KOG1429|consen 24 PSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKEN----LEHWIGHPNFELIRHDVVEP-----LLKEV-- 92 (350)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhh----cchhccCcceeEEEeechhH-----HHHHh--
Confidence 45678999999999999999999999999999999866543222 22223456778888888765 77767
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC----CCCCCChH
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR----TDQPASLY 231 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~----~~~~~~~Y 231 (424)
|.|+|+|+.+++......+-.++..|..|+.+.+-.|++.+. ||+++||+.|||.....|..|+.+ +..|.++|
T Consensus 93 D~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~a--R~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cy 170 (350)
T KOG1429|consen 93 DQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCY 170 (350)
T ss_pred hhhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhCc--eEEEeecccccCCcccCCCccccccccCcCCchhhh
Confidence 999999999988777788889999999999999999999883 999999999999977777776654 33577999
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC--CCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHH
Q 042406 232 AATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR--PDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKG 309 (424)
Q Consensus 232 ~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 309 (424)
...|..+|.++..+.++.|+.+.|.|+.++|||... .....+.|..+.+++.++++| ++|.++|+|.||+|++++
T Consensus 171 degKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~---g~G~qtRSF~yvsD~Veg 247 (350)
T KOG1429|consen 171 DEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVY---GDGKQTRSFQYVSDLVEG 247 (350)
T ss_pred hHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEE---cCCcceEEEEeHHHHHHH
Confidence 999999999999999999999999999999999764 345678899999999999999 899999999999999999
Q ss_pred HHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcC
Q 042406 310 CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELG 389 (424)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG 389 (424)
++.+++.+.. +.+||++++.+|+.||++++.++.+....++..+. .+.+.....-|.+++++.||
T Consensus 248 ll~Lm~s~~~--------------~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~~-~~Ddp~kR~pDit~ake~Lg 312 (350)
T KOG1429|consen 248 LLRLMESDYR--------------GPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVEN-GPDDPRKRKPDITKAKEQLG 312 (350)
T ss_pred HHHHhcCCCc--------------CCcccCCccceeHHHHHHHHHHHcCCCcceeecCC-CCCCccccCccHHHHHHHhC
Confidence 9999998765 45999999999999999999999977666665553 36677777899999999999
Q ss_pred CcccCCHHHHHHHHHHHHHHHhccCC
Q 042406 390 YMPTTDLETGLKKFVRWYLSYYNSAS 415 (424)
Q Consensus 390 ~~p~~~l~~~l~~~v~~~~~~~~~~~ 415 (424)
|.|..+|+|+|..++.|+++...+.+
T Consensus 313 W~Pkv~L~egL~~t~~~fr~~i~~~~ 338 (350)
T KOG1429|consen 313 WEPKVSLREGLPLTVTYFRERIAREK 338 (350)
T ss_pred CCCCCcHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999876643
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=327.88 Aligned_cols=311 Identities=26% Similarity=0.426 Sum_probs=250.5
Q ss_pred eEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+||||+|+||++++++|+++| ++|++++|........ ... ......+++++.+|++|++++.++++..++|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLE--NLA-DLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhh--hhh-hhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 48999999999999999999987 7899988743211111 011 111224688999999999999999998667999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC-CCCCCCCCCCCCChHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKV-PFSEKDRTDQPASLYAATKKA 237 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~-~~~e~~~~~~~~~~Y~~sK~~ 237 (424)
||+|+.........+++..+++|+.++.+++++|++.+.+.++|++||.++||..... ++.|.++. .|.+.|+.+|..
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~-~~~~~Y~~sK~~ 156 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPL-APSSPYSASKAA 156 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCC-CCCCchHHHHHH
Confidence 9999986655555677889999999999999999987654489999999999965433 56666654 677899999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 238 ~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
+|.+++.++.+.+++++++||+.+|||+.....+++.++..+..++++.++ +++++.++|+|++|+|+++..++++.
T Consensus 157 ~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~D~a~~~~~~~~~~ 233 (317)
T TIGR01181 157 SDHLVRAYHRTYGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVY---GDGQQVRDWLYVEDHCRAIYLVLEKG 233 (317)
T ss_pred HHHHHHHHHHHhCCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEe---CCCceEEeeEEHHHHHHHHHHHHcCC
Confidence 999999998888999999999999999876666777888888888888776 57788999999999999999998753
Q ss_pred cccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCcccCCHH
Q 042406 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLE 397 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p~~~l~ 397 (424)
. .+++||+++++++++.|+++.+.+.+|.+..................+|++|+++.|||.|+++++
T Consensus 234 ~-------------~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~~ 300 (317)
T TIGR01181 234 R-------------VGETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAPKYTFE 300 (317)
T ss_pred C-------------CCceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCCCCcHH
Confidence 2 127999999999999999999999999754322211112233334568999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 042406 398 TGLKKFVRWYLSYY 411 (424)
Q Consensus 398 ~~l~~~v~~~~~~~ 411 (424)
++++++++||+++.
T Consensus 301 ~~i~~~~~~~~~~~ 314 (317)
T TIGR01181 301 EGLRKTVQWYLDNE 314 (317)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999997654
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=332.79 Aligned_cols=307 Identities=25% Similarity=0.359 Sum_probs=245.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.++|+||||||+||||++|++.|+++|++|++++|..+... .. ....++++.+|++|.+.+.++++++ |
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~------~~---~~~~~~~~~~Dl~d~~~~~~~~~~~--D 87 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHM------SE---DMFCHEFHLVDLRVMENCLKVTKGV--D 87 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccc------cc---ccccceEEECCCCCHHHHHHHHhCC--C
Confidence 46789999999999999999999999999999998542110 00 1123578899999999998888865 9
Q ss_pred EEEEcccccCc-hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC----CCCCCCCC-CCCCCCh
Q 042406 157 HVMHLAAQAGV-RYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKK----VPFSEKDR-TDQPASL 230 (424)
Q Consensus 157 ~vi~~Ag~~~~-~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~----~~~~e~~~-~~~~~~~ 230 (424)
+|||+|+.... .....++...+..|+.++.+++++|++.+++ +|||+||.++||.... .++.|++. +..|.+.
T Consensus 88 ~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk-~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~ 166 (370)
T PLN02695 88 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVK-RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDA 166 (370)
T ss_pred EEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCC-EEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCH
Confidence 99999986532 1223345667889999999999999999875 9999999999986432 23556542 4467899
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CCcHHHHHHHHHc-CCceeEEecCCCCccccccccHHH
Q 042406 231 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP----DMAYFFFTRDIIR-GKRITVYEAPDGASVARDFTYIDD 305 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~v~D 305 (424)
|+.+|.++|.++..+++.+|++++++||++||||+... ......++..++. +.++.++ +++++.++|+|++|
T Consensus 167 Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---g~g~~~r~~i~v~D 243 (370)
T PLN02695 167 YGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMW---GDGKQTRSFTFIDE 243 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEe---CCCCeEEeEEeHHH
Confidence 99999999999999988889999999999999997642 2345567776665 4667776 67899999999999
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHH
Q 042406 306 IVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQ 385 (424)
Q Consensus 306 va~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~ 385 (424)
++++++.+++... +++||+++++++|+.|+++.+.+..|.+.++...+.+ ........|++|++
T Consensus 244 ~a~ai~~~~~~~~--------------~~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~--~~~~~~~~d~sk~~ 307 (370)
T PLN02695 244 CVEGVLRLTKSDF--------------REPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGP--EGVRGRNSDNTLIK 307 (370)
T ss_pred HHHHHHHHHhccC--------------CCceEecCCCceeHHHHHHHHHHHhCCCCCceecCCC--CCccccccCHHHHH
Confidence 9999998876532 1689999999999999999999999976655544432 22234568999999
Q ss_pred hHcCCcccCCHHHHHHHHHHHHHHHhccC
Q 042406 386 RELGYMPTTDLETGLKKFVRWYLSYYNSA 414 (424)
Q Consensus 386 ~~LG~~p~~~l~~~l~~~v~~~~~~~~~~ 414 (424)
++|||.|+++++++|+++++|+.++....
T Consensus 308 ~~lgw~p~~~l~e~i~~~~~~~~~~~~~~ 336 (370)
T PLN02695 308 EKLGWAPTMRLKDGLRITYFWIKEQIEKE 336 (370)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998876543
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=306.45 Aligned_cols=311 Identities=25% Similarity=0.390 Sum_probs=262.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC--CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKR--GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++++||||.||||++.+..+... .+..+.+|-..= ... .....+....++..++++|+.+...+..++...++|.
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~--~s~-~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~ 83 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDY--CSN-LKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDT 83 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeeccc--ccc-cchhhhhccCCCceEeeccccchHHHHhhhccCchhh
Confidence 78999999999999999999987 356666654221 001 1122223356789999999999999999998888999
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCC-CCCCCCCCCChHHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFS-EKDRTDQPASLYAATKK 236 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~-e~~~~~~~~~~Y~~sK~ 236 (424)
|+|.|+..++..+..++-.....|+.++..|+++++..+-.++|||+||..|||...+.... |.+.+ .|.++|++||+
T Consensus 84 vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~-nPtnpyAasKa 162 (331)
T KOG0747|consen 84 VIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLL-NPTNPYAASKA 162 (331)
T ss_pred hhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccC-CCCCchHHHHH
Confidence 99999999988888888889999999999999999999655699999999999998887777 55544 89999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhh
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 316 (424)
++|.+++++.+.+|++++++|.++||||+..+.-.++.|+.....+++.++. |++.+.++|+|++|+++++.++++.
T Consensus 163 AaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~~i~---g~g~~~rs~l~veD~~ea~~~v~~K 239 (331)
T KOG0747|consen 163 AAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIH---GDGLQTRSYLYVEDVSEAFKAVLEK 239 (331)
T ss_pred HHHHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCccee---cCcccceeeEeHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998888899999988899999888 8999999999999999999999987
Q ss_pred ccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccc------cccCCCCCCcccccCChHHHHhHcCC
Q 042406 317 AKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETK------VLPLPRNGDVQFTHANISLAQRELGY 390 (424)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~------~~~~~~~~~~~~~~~d~s~~~~~LG~ 390 (424)
.. .|++|||++..+.+..|+++.+.+.+.....-. ..-..++....+..+|.+|++ .|||
T Consensus 240 g~-------------~geIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik-~LGw 305 (331)
T KOG0747|consen 240 GE-------------LGEIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIK-KLGW 305 (331)
T ss_pred CC-------------ccceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHH-hcCC
Confidence 43 238999999999999999999999887633211 111123344445778999998 7999
Q ss_pred cccCCHHHHHHHHHHHHHHHh
Q 042406 391 MPTTDLETGLKKFVRWYLSYY 411 (424)
Q Consensus 391 ~p~~~l~~~l~~~v~~~~~~~ 411 (424)
+|++++++||+.+++||.+..
T Consensus 306 ~~~~p~~eGLrktie~y~~~~ 326 (331)
T KOG0747|consen 306 RPTTPWEEGLRKTIEWYTKNF 326 (331)
T ss_pred cccCcHHHHHHHHHHHHHhhh
Confidence 999999999999999999876
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=324.27 Aligned_cols=318 Identities=26% Similarity=0.421 Sum_probs=246.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|+||||+||||++|++.|+++|++|++++|..+......... ......++.++.+|++|.+++.++++..++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVI--ERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHH--HHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 67999999999999999999999999999987543322211111 1112345788999999999999999876789999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|+|+.........++...+.+|+.++.+++++|++.+++ +||++||.++||.....+++|+++...|.+.|+.+|.++|
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 157 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHHHH
Confidence 999976543334556788999999999999999999875 8999999999997666678887765467899999999999
Q ss_pred HHHHHHHHHh-CCcEEEEEeccccCCCCC------C----CCcHHHHHHHHHcCC--ceeEEec---CCCCccccccccH
Q 042406 240 AIAHAYNHIY-GLSITGLRFFTVYGPWGR------P----DMAYFFFTRDIIRGK--RITVYEA---PDGASVARDFTYI 303 (424)
Q Consensus 240 ~~~~~~~~~~-~i~~~~vrp~~v~G~~~~------~----~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~i~v 303 (424)
.+++.+++.. +++++++|++++|||... . ..+.+ ++..+..+. .+.++.. ..++.+.++|+|+
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v 236 (338)
T PRK10675 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMP-YIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236 (338)
T ss_pred HHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHHH-HHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEH
Confidence 9999998764 899999999999997421 1 11223 333444332 2444420 0246788999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHH
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISL 383 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~ 383 (424)
+|+|++++.+++..... ..+++||+++++++|+.|+++.+.+.+|.+.++...+. ...+.....+|++|
T Consensus 237 ~D~a~~~~~~~~~~~~~----------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~~~k 305 (338)
T PRK10675 237 MDLADGHVAAMEKLANK----------PGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAPR-REGDLPAYWADASK 305 (338)
T ss_pred HHHHHHHHHHHHhhhcc----------CCCceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCCC-CCCchhhhhcCHHH
Confidence 99999999998753211 11279999999999999999999999998766554442 23344556789999
Q ss_pred HHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 384 AQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 384 ~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
+++.|||+|+++++++|+++++|++++..
T Consensus 306 ~~~~lg~~p~~~~~~~~~~~~~~~~~~~~ 334 (338)
T PRK10675 306 ADRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_pred HHHHhCCCCcCcHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999988744
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=321.88 Aligned_cols=308 Identities=16% Similarity=0.156 Sum_probs=229.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++|+||||||+||||++|+++|+++|++|++++|+......... .........+++++.+|++|.+.+.++++++ |+
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~--d~ 80 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDH-LLALDGAKERLKLFKADLLDEGSFELAIDGC--ET 80 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHH-HHhccCCCCceEEEeCCCCCchHHHHHHcCC--CE
Confidence 57899999999999999999999999999999887653322111 1100011246889999999999999999865 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-----CCCCCCCCCCCC-----C
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNK-----KVPFSEKDRTDQ-----P 227 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~-----~~~~~e~~~~~~-----~ 227 (424)
||||||........+++...+++|+.|+.+++++|.+....++||++||.++|+... ..+++|+.+... +
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~ 160 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEER 160 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccc
Confidence 999999754333334557789999999999999998753224999999988775422 234666655421 2
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-CcHHHHHHHHHcCCceeEEecCCCCccccccccHHHH
Q 042406 228 ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD-MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDI 306 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 306 (424)
.+.|+.||.++|.++..+.+.++++++++||+++|||+..+. .+...++..++.++... + ...++|+|++|+
T Consensus 161 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~~-----~--~~~r~~i~v~Dv 233 (325)
T PLN02989 161 KQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNPF-----N--TTHHRFVDVRDV 233 (325)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCCC-----C--CcCcCeeEHHHH
Confidence 468999999999999999888899999999999999986543 23444555666665431 1 245789999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHh
Q 042406 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQR 386 (424)
Q Consensus 307 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~ 386 (424)
|++++.+++.+.. ++.||++ +..+|+.|+++.+.+.++..............+......|++|+++
T Consensus 234 a~a~~~~l~~~~~-------------~~~~ni~-~~~~s~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 299 (325)
T PLN02989 234 ALAHVKALETPSA-------------NGRYIID-GPVVTIKDIENVLREFFPDLCIADRNEDITELNSVTFNVCLDKVKS 299 (325)
T ss_pred HHHHHHHhcCccc-------------CceEEEe-cCCCCHHHHHHHHHHHCCCCCCCCCCCCcccccccCcCCCHHHHHH
Confidence 9999999886532 1589995 5579999999999999974221110000111122356788999875
Q ss_pred HcCCcccCCHHHHHHHHHHHHHHH
Q 042406 387 ELGYMPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 387 ~LG~~p~~~l~~~l~~~v~~~~~~ 410 (424)
|||.|.++++|+|+++++|+++.
T Consensus 300 -lg~~p~~~l~~gi~~~~~~~~~~ 322 (325)
T PLN02989 300 -LGIIEFTPTETSLRDTVLSLKEK 322 (325)
T ss_pred -cCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999753
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=352.16 Aligned_cols=314 Identities=26% Similarity=0.375 Sum_probs=250.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC--CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKR--GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
++|+||||||+||||++|+++|+++ |++|++++|.... ....... ......+++++.+|++|.+.+.+++...++
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~--~~~~~l~-~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~ 81 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYC--SNLKNLN-PSKSSPNFKFVKGDIASADLVNYLLITEGI 81 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCcc--chhhhhh-hcccCCCeEEEECCCCChHHHHHHHhhcCC
Confidence 5689999999999999999999998 6899999874311 0011111 111235789999999999999888765578
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCC---CCCCCCCCCCCChHH
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVP---FSEKDRTDQPASLYA 232 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~---~~e~~~~~~~~~~Y~ 232 (424)
|+|||+|+.........++...+++|+.|+.+++++|++.+..++|||+||..+||.....+ ..|+.+. .|.+.|+
T Consensus 82 D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~-~p~~~Y~ 160 (668)
T PLN02260 82 DTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQL-LPTNPYS 160 (668)
T ss_pred CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCC-CCCCCcH
Confidence 99999999876554555667889999999999999999987334999999999999754432 2344444 5778999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHH
Q 042406 233 ATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLA 312 (424)
Q Consensus 233 ~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 312 (424)
.+|.++|.+++.+.+.++++++++||++||||+.....+++.++..+..+.++.++ +++++.++|+|++|+|++++.
T Consensus 161 ~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g~~i~i~---g~g~~~r~~ihV~Dva~a~~~ 237 (668)
T PLN02260 161 ATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIH---GDGSNVRSYLYCEDVAEAFEV 237 (668)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcccHHHHHHHHHhCCCCeEEe---cCCCceEeeEEHHHHHHHHHH
Confidence 99999999999998888999999999999999876666777788888888888876 678899999999999999999
Q ss_pred HhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccccccc-CCCCCCcccccCChHHHHhHcCCc
Q 042406 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP-LPRNGDVQFTHANISLAQRELGYM 391 (424)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~~d~s~~~~~LG~~ 391 (424)
+++... .+++||+++++.+++.|+++.+.+.+|.+....... ..++........|++|++ +|||.
T Consensus 238 ~l~~~~-------------~~~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~-~lGw~ 303 (668)
T PLN02260 238 VLHKGE-------------VGHVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLK-KLGWQ 303 (668)
T ss_pred HHhcCC-------------CCCEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHH-HcCCC
Confidence 886532 127999999999999999999999999764321111 112333345568999996 69999
Q ss_pred ccCCHHHHHHHHHHHHHHHhc
Q 042406 392 PTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 392 p~~~l~~~l~~~v~~~~~~~~ 412 (424)
|+++++|+|+++++|++++.+
T Consensus 304 p~~~~~egl~~~i~w~~~~~~ 324 (668)
T PLN02260 304 ERTSWEEGLKKTMEWYTSNPD 324 (668)
T ss_pred CCCCHHHHHHHHHHHHHhChh
Confidence 999999999999999998644
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=319.56 Aligned_cols=301 Identities=20% Similarity=0.226 Sum_probs=228.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.++|+|+||||+||||++|+++|+++|++|++++|+.+...... .........+++++.+|++|.+++.++++++ |
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 83 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTH--LRELEGGKERLILCKADLQDYEALKAAIDGC--D 83 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHH--HHHhhCCCCcEEEEecCcCChHHHHHHHhcC--C
Confidence 45789999999999999999999999999999999754321110 0000001236889999999999999999976 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC-cccCCCCC---CCCCCCCC-----CCCC
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSS-SVYGVNKK---VPFSEKDR-----TDQP 227 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~-~vyg~~~~---~~~~e~~~-----~~~~ 227 (424)
+|||+|+.. ..++...+++|+.|+.+++++|++.+++ +||++||. ++||.... .+++|+++ +..+
T Consensus 84 ~Vih~A~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p 157 (342)
T PLN02214 84 GVFHTASPV-----TDDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNT 157 (342)
T ss_pred EEEEecCCC-----CCCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeccceeeeccCCCCCCcccCcccCCChhhcccc
Confidence 999999964 2456789999999999999999998875 99999996 68875332 24666642 2246
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC--CcHHHHHHHHHcCCceeEEecCCCCccccccccHHH
Q 042406 228 ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD--MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDD 305 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 305 (424)
.+.|+.||.++|.++..+.+++|++++++||++||||+.... .....++ .++.+.... + ++..++||||+|
T Consensus 158 ~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~-~~~~g~~~~-~-----~~~~~~~i~V~D 230 (342)
T PLN02214 158 KNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVL-KYLTGSAKT-Y-----ANLTQAYVDVRD 230 (342)
T ss_pred ccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCccc-C-----CCCCcCeeEHHH
Confidence 678999999999999999888899999999999999976432 1122233 344554432 2 245789999999
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCc-ccccccccCCCCCCcccccCChHHH
Q 042406 306 IVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKV-KAETKVLPLPRNGDVQFTHANISLA 384 (424)
Q Consensus 306 va~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~d~s~~ 384 (424)
+|++++.+++.+.. ++.||+++ ..+++.|+++.+.+.++. +.+....+ ..........+|++|+
T Consensus 231 va~a~~~al~~~~~-------------~g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~k~ 295 (342)
T PLN02214 231 VALAHVLVYEAPSA-------------SGRYLLAE-SARHRGEVVEILAKLFPEYPLPTKCKD-EKNPRAKPYKFTNQKI 295 (342)
T ss_pred HHHHHHHHHhCccc-------------CCcEEEec-CCCCHHHHHHHHHHHCCCCCCCCCCcc-ccCCCCCccccCcHHH
Confidence 99999999986531 15799987 468999999999999863 22221111 1123344556899999
Q ss_pred HhHcCCcccCCHHHHHHHHHHHHHHHh
Q 042406 385 QRELGYMPTTDLETGLKKFVRWYLSYY 411 (424)
Q Consensus 385 ~~~LG~~p~~~l~~~l~~~v~~~~~~~ 411 (424)
+ +|||+|. +++|+|+++++|+++..
T Consensus 296 ~-~LG~~p~-~lee~i~~~~~~~~~~~ 320 (342)
T PLN02214 296 K-DLGLEFT-STKQSLYDTVKSLQEKG 320 (342)
T ss_pred H-HcCCccc-CHHHHHHHHHHHHHHcC
Confidence 7 5999995 99999999999998754
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=317.32 Aligned_cols=281 Identities=17% Similarity=0.184 Sum_probs=228.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||+||||++|+++|+++| +|++++|.. ..+.+|++|.+.+.+++++.+||+||
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~--------------------~~~~~Dl~d~~~~~~~~~~~~~D~Vi 59 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHS--------------------TDYCGDFSNPEGVAETVRKIRPDVIV 59 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEecccc--------------------ccccCCCCCHHHHHHHHHhcCCCEEE
Confidence 689999999999999999999999 799998732 12457999999999999987889999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|+|+...+..++.+++..+.+|+.|+.+++++|++.+. ++||+||..|||.....|++|++++ .|.+.|+.||+++|
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~Ss~~Vy~~~~~~p~~E~~~~-~P~~~Yg~sK~~~E 136 (299)
T PRK09987 60 NAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYSTDYVFPGTGDIPWQETDAT-APLNVYGETKLAGE 136 (299)
T ss_pred ECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEccceEECCCCCCCcCCCCCC-CCCCHHHHHHHHHH
Confidence 99999877777778888999999999999999999884 7999999999997766788888866 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCC--CccccccccHHHHHHHHHHHhhhc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDG--ASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
.++..+. .+.+++||+++|||+.. .+...+++.+..++++.++ ++ +...+.+.+++|++.++..+++..
T Consensus 137 ~~~~~~~----~~~~ilR~~~vyGp~~~--~~~~~~~~~~~~~~~~~v~---~d~~g~~~~~~~~~d~~~~~~~~~~~~~ 207 (299)
T PRK09987 137 KALQEHC----AKHLIFRTSWVYAGKGN--NFAKTMLRLAKEREELSVI---NDQFGAPTGAELLADCTAHAIRVALNKP 207 (299)
T ss_pred HHHHHhC----CCEEEEecceecCCCCC--CHHHHHHHHHhcCCCeEEe---CCCcCCCCCHHHHHHHHHHHHHHhhccC
Confidence 9988763 46799999999999653 4566778878788888887 34 455566677788888888776543
Q ss_pred cccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhC---cccc---cccccC----CCCCCcccccCChHHHHhH
Q 042406 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILK---VKAE---TKVLPL----PRNGDVQFTHANISLAQRE 387 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g---~~~~---~~~~~~----~~~~~~~~~~~d~s~~~~~ 387 (424)
.. +++||+++++.+|+.|+++.+.+.++ .+.. +...+. .+..+..+..+|++|+++.
T Consensus 208 ~~-------------~giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~ 274 (299)
T PRK09987 208 EV-------------AGLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQN 274 (299)
T ss_pred CC-------------CCeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHH
Confidence 21 16999999999999999999988643 3321 112211 1234556778999999999
Q ss_pred cCCcccCCHHHHHHHHHHHH
Q 042406 388 LGYMPTTDLETGLKKFVRWY 407 (424)
Q Consensus 388 LG~~p~~~l~~~l~~~v~~~ 407 (424)
|||+|. +|+++|+++++.+
T Consensus 275 lg~~~~-~~~~~l~~~~~~~ 293 (299)
T PRK09987 275 FALVLP-DWQVGVKRMLTEL 293 (299)
T ss_pred hCCCCc-cHHHHHHHHHHHH
Confidence 999986 9999999999865
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=314.90 Aligned_cols=291 Identities=22% Similarity=0.324 Sum_probs=233.4
Q ss_pred EEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEEcc
Q 042406 83 LVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLA 162 (424)
Q Consensus 83 lItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~~A 162 (424)
|||||+||||++|++.|+++|+.|+++.+. ..+|++|.+++.++++..++|+|||+|
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~-----------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A 57 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH-----------------------KELDLTRQADVEAFFAKEKPTYVILAA 57 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc-----------------------ccCCCCCHHHHHHHHhccCCCEEEEee
Confidence 699999999999999999999988866431 147999999999999988889999999
Q ss_pred cccCc-hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC---CCCCCC-hHHHHHHH
Q 042406 163 AQAGV-RYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR---TDQPAS-LYAATKKA 237 (424)
Q Consensus 163 g~~~~-~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~---~~~~~~-~Y~~sK~~ 237 (424)
+.... .....++...+++|+.++.+++++|++.+++ +||++||+.+||.....+++|+++ +..|.+ .|+.||.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~ 136 (306)
T PLN02725 58 AKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIA 136 (306)
T ss_pred eeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHH
Confidence 97543 2234567788999999999999999999875 999999999999766677888762 223433 59999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CCcHHHHHHH----HHcCCceeEEecCCCCccccccccHHHHHHH
Q 042406 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRP----DMAYFFFTRD----IIRGKRITVYEAPDGASVARDFTYIDDIVKG 309 (424)
Q Consensus 238 ~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 309 (424)
+|.+++.+.+.++++++++||+.||||+... ...++.++.. ...+.++.+.. +++++.++|+|++|++++
T Consensus 137 ~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~g~~~~~~i~v~Dv~~~ 214 (306)
T PLN02725 137 GIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVW--GSGSPLREFLHVDDLADA 214 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEc--CCCCeeeccccHHHHHHH
Confidence 9999999988889999999999999997532 2334444433 34566655521 577889999999999999
Q ss_pred HHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcC
Q 042406 310 CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELG 389 (424)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG 389 (424)
++.+++.... .+.||+++++.+|+.|+++.+.+.++.+..+...+ .+..+.....+|++|++ .||
T Consensus 215 ~~~~~~~~~~-------------~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~d~~k~~-~lg 279 (306)
T PLN02725 215 VVFLMRRYSG-------------AEHVNVGSGDEVTIKELAELVKEVVGFEGELVWDT-SKPDGTPRKLMDSSKLR-SLG 279 (306)
T ss_pred HHHHHhcccc-------------CcceEeCCCCcccHHHHHHHHHHHhCCCCceeecC-CCCCcccccccCHHHHH-HhC
Confidence 9999876421 15789999999999999999999999766554332 22333445678999996 699
Q ss_pred CcccCCHHHHHHHHHHHHHHHhccC
Q 042406 390 YMPTTDLETGLKKFVRWYLSYYNSA 414 (424)
Q Consensus 390 ~~p~~~l~~~l~~~v~~~~~~~~~~ 414 (424)
|.|+++++++|+++++|+.++.++.
T Consensus 280 ~~p~~~~~~~l~~~~~~~~~~~~~~ 304 (306)
T PLN02725 280 WDPKFSLKDGLQETYKWYLENYETG 304 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999887653
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=313.51 Aligned_cols=309 Identities=18% Similarity=0.223 Sum_probs=224.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
..+|+||||||+||||++|+++|+++|++|++++|+.+....... .. ......+++++.+|++|.+++.++++++ |
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 82 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LR-ALQELGDLKIFGADLTDEESFEAPIAGC--D 82 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HH-hcCCCCceEEEEcCCCChHHHHHHHhcC--C
Confidence 457899999999999999999999999999999887543221110 00 0011136889999999999999999865 9
Q ss_pred EEEEcccccCchhhccChH-HHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC----CCCCCCCCC--------
Q 042406 157 HVMHLAAQAGVRYAMQNPN-SYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNK----KVPFSEKDR-------- 223 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~-~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~----~~~~~e~~~-------- 223 (424)
+|||+|+... ....++. ..+++|+.|+.++++++.+.+..++||++||+++||... ..+++|+.+
T Consensus 83 ~vih~A~~~~--~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~ 160 (338)
T PLN00198 83 LVFHVATPVN--FASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTS 160 (338)
T ss_pred EEEEeCCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhh
Confidence 9999999643 1223333 567999999999999998864224999999999998532 234444321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC--CcHHHHHHHHHcCCceeEEecCC--CCccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD--MAYFFFTRDIIRGKRITVYEAPD--GASVARD 299 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 299 (424)
...|.+.|+.||.++|.+++.+++.++++++++||++||||+.... .... ++..++.++.+.+....+ ..+..++
T Consensus 161 ~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~ 239 (338)
T PLN00198 161 EKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSLS-LAMSLITGNEFLINGLKGMQMLSGSIS 239 (338)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcHH-HHHHHHcCCccccccccccccccCCcc
Confidence 1246788999999999999999988899999999999999975432 1222 233556666655431000 0122479
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCc-ccccccccCCCCCCccccc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKV-KAETKVLPLPRNGDVQFTH 378 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~ 378 (424)
|+||+|+|++++.+++..... +.|+ +++..+++.|+++.+.+.++. +.+....+.+ ......
T Consensus 240 ~i~V~D~a~a~~~~~~~~~~~-------------~~~~-~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~---~~~~~~ 302 (338)
T PLN00198 240 ITHVEDVCRAHIFLAEKESAS-------------GRYI-CCAANTSVPELAKFLIKRYPQYQVPTDFGDFP---SKAKLI 302 (338)
T ss_pred eeEHHHHHHHHHHHhhCcCcC-------------CcEE-EecCCCCHHHHHHHHHHHCCCCCCCccccccC---CCCccc
Confidence 999999999999998764311 4574 556779999999999998863 2222221111 123456
Q ss_pred CChHHHHhHcCCcccCCHHHHHHHHHHHHHHH
Q 042406 379 ANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 379 ~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~ 410 (424)
.|++|+++ +||+|+++++|+|+++++||+++
T Consensus 303 ~~~~k~~~-~G~~p~~~l~~gi~~~~~~~~~~ 333 (338)
T PLN00198 303 ISSEKLIS-EGFSFEYGIEEIYDQTVEYFKAK 333 (338)
T ss_pred cChHHHHh-CCceecCcHHHHHHHHHHHHHHc
Confidence 89999987 69999999999999999999864
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=310.88 Aligned_cols=291 Identities=22% Similarity=0.335 Sum_probs=218.1
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHH----HHHhhc---cC
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLL----DKIFNV---VA 154 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v----~~~~~~---~~ 154 (424)
||||||+||||++|+++|+++|++|+++.|+....... ..+..+|+.|.... .+++++ .+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 68 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-------------VNLVDLDIADYMDKEDFLAQIMAGDDFGD 68 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH-------------HhhhhhhhhhhhhHHHHHHHHhcccccCC
Confidence 79999999999999999999999777665543221100 01223455554332 333332 15
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
+|+|||+||..... ..+++..++.|+.++.+++++|++.+. +||++||+++||.....+..|+.+. .|.+.|+.|
T Consensus 69 ~d~Vih~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 143 (308)
T PRK11150 69 IEAIFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTDDFIEEREYE-KPLNVYGYS 143 (308)
T ss_pred ccEEEECceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEcchHHhCcCCCCCCccCCCC-CCCCHHHHH
Confidence 79999999864432 234566899999999999999999875 6999999999997554455555543 778999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC----cHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHH
Q 042406 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDM----AYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 310 (424)
|.++|++++.++...+++++++||++||||+..... ....+...+..+....++. ++++..++|+|++|+|+++
T Consensus 144 K~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--g~~~~~r~~i~v~D~a~a~ 221 (308)
T PRK11150 144 KFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFE--GSENFKRDFVYVGDVAAVN 221 (308)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEec--CCCceeeeeeeHHHHHHHH
Confidence 999999999998888999999999999999865432 2334556777777665653 4567789999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCC---CCcccccCChHHHHhH
Q 042406 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN---GDVQFTHANISLAQRE 387 (424)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~~d~s~~~~~ 387 (424)
+.+++... +++||+++++.+|+.|+++.+.+.++.. .....+.+.. ........|++|+++
T Consensus 222 ~~~~~~~~--------------~~~yni~~~~~~s~~el~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~- 285 (308)
T PRK11150 222 LWFWENGV--------------SGIFNCGTGRAESFQAVADAVLAYHKKG-EIEYIPFPDKLKGRYQAFTQADLTKLRA- 285 (308)
T ss_pred HHHHhcCC--------------CCeEEcCCCCceeHHHHHHHHHHHhCCC-cceeccCccccccccceecccCHHHHHh-
Confidence 98887532 1699999999999999999999999853 2222232221 112345689999985
Q ss_pred cCCccc-CCHHHHHHHHHHHHH
Q 042406 388 LGYMPT-TDLETGLKKFVRWYL 408 (424)
Q Consensus 388 LG~~p~-~~l~~~l~~~v~~~~ 408 (424)
+||+|+ .+++++|+++++|+.
T Consensus 286 ~g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 286 AGYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred cCCCCCCCCHHHHHHHHHHHhh
Confidence 799987 599999999999975
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=315.01 Aligned_cols=314 Identities=19% Similarity=0.217 Sum_probs=224.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
+.+++|+||||||+||||++++++|+++|++|++++|+....... ........+++++.+|++|.+.+.++++++
T Consensus 6 ~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~- 80 (353)
T PLN02896 6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHL----LSKWKEGDRLRLFRADLQEEGSFDEAVKGC- 80 (353)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHH----HHhhccCCeEEEEECCCCCHHHHHHHHcCC-
Confidence 356789999999999999999999999999999999864322111 111112346889999999999999999865
Q ss_pred ccEEEEcccccCchh--hccChHH-----HHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC-----CCCCCCC
Q 042406 155 FTHVMHLAAQAGVRY--AMQNPNS-----YVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKK-----VPFSEKD 222 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~--~~~~~~~-----~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~-----~~~~e~~ 222 (424)
|+|||+|+...... ...+++. .+++|+.|+.+++++|.+.+..++||++||.++||.... .+++|+.
T Consensus 81 -d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~ 159 (353)
T PLN02896 81 -DGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETC 159 (353)
T ss_pred -CEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCccc
Confidence 99999999865432 2234443 445567999999999988752349999999999985321 3455542
Q ss_pred CC--------CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHH---cCCcee--EEe
Q 042406 223 RT--------DQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDII---RGKRIT--VYE 289 (424)
Q Consensus 223 ~~--------~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~---~~~~~~--~~~ 289 (424)
+. ..+.+.|+.||.++|.++..+.+.++++++++||++||||+.... ++.++..++ .+.... .+.
T Consensus 160 ~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~--~~~~~~~~~~~~~g~~~~~~~~~ 237 (353)
T PLN02896 160 QTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPS--VPSSIQVLLSPITGDSKLFSILS 237 (353)
T ss_pred CCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCC--CCchHHHHHHHhcCCcccccccc
Confidence 11 124458999999999999999988899999999999999976432 122233222 343221 110
Q ss_pred cCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcc-cccccccC
Q 042406 290 APDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK-AETKVLPL 368 (424)
Q Consensus 290 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~ 368 (424)
........++|||++|+|++++.+++.+.. ++.|++ ++.++++.|+++.+.+.++.. ......+
T Consensus 238 ~~~~~~~~~dfi~v~Dva~a~~~~l~~~~~-------------~~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~~- 302 (353)
T PLN02896 238 AVNSRMGSIALVHIEDICDAHIFLMEQTKA-------------EGRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLDE- 302 (353)
T ss_pred ccccccCceeEEeHHHHHHHHHHHHhCCCc-------------CccEEe-cCCCCCHHHHHHHHHHhCCCCCccccccc-
Confidence 000111246999999999999999975321 146765 567799999999999999743 2222222
Q ss_pred CCCCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 369 PRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 369 ~~~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
+...+.. ...|.++++ +|||+|+++++++|+++++|++++...
T Consensus 303 ~~~~~~~-~~~~~~~~~-~lGw~p~~~l~~~i~~~~~~~~~~~~~ 345 (353)
T PLN02896 303 EKRGSIP-SEISSKKLR-DLGFEYKYGIEEIIDQTIDCCVDHGFL 345 (353)
T ss_pred cccCccc-cccCHHHHH-HcCCCccCCHHHHHHHHHHHHHHCCCC
Confidence 2222323 356888886 599999999999999999999998774
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=312.75 Aligned_cols=309 Identities=18% Similarity=0.253 Sum_probs=223.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.+.|+||||||+||||++|+++|+++|++|++++|+.+........... .....+++++.+|++|.+.+.++++++ |
T Consensus 3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~v~~Dl~d~~~~~~~~~~~--d 79 (351)
T PLN02650 3 SQKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDL-PGATTRLTLWKADLAVEGSFDDAIRGC--T 79 (351)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhc-cCCCCceEEEEecCCChhhHHHHHhCC--C
Confidence 3567899999999999999999999999999999965433221111100 001135889999999999999999866 9
Q ss_pred EEEEcccccCchhhccCh-HHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-CCC-CCCCCCC--------C
Q 042406 157 HVMHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNK-KVP-FSEKDRT--------D 225 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~-~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~-~~~-~~e~~~~--------~ 225 (424)
+|||+|+.... ...++ ...+++|+.|+.+++++|++.+..++||++||.++|+... ..+ ++|+.+. .
T Consensus 80 ~ViH~A~~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 157 (351)
T PLN02650 80 GVFHVATPMDF--ESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKK 157 (351)
T ss_pred EEEEeCCCCCC--CCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccc
Confidence 99999987532 22233 4789999999999999999876334999999998776432 223 4554321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHH--HcCCceeEEecCCCCccccccccH
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDI--IRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
.+.+.|+.||.++|.+++.+.+++|++++++||++||||+..... ...++..+ ..+.... + + ....++|+|+
T Consensus 158 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~-~~~~~~~~~~~~~~~~~-~---~-~~~~r~~v~V 231 (351)
T PLN02650 158 MTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSM-PPSLITALSLITGNEAH-Y---S-IIKQGQFVHL 231 (351)
T ss_pred cccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCC-CccHHHHHHHhcCCccc-c---C-cCCCcceeeH
Confidence 244689999999999999999889999999999999999764321 12222222 2333221 1 1 1234799999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcc-cccccccCCCCCCcccccCChH
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK-AETKVLPLPRNGDVQFTHANIS 382 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~d~s 382 (424)
+|+|++++.+++.+.. ++.| ++++..+|+.|+++++.+.++.. .+.. .+ ....+......|++
T Consensus 232 ~Dva~a~~~~l~~~~~-------------~~~~-i~~~~~~s~~el~~~i~~~~~~~~~~~~-~~-~~~~~~~~~~~d~~ 295 (351)
T PLN02650 232 DDLCNAHIFLFEHPAA-------------EGRY-ICSSHDATIHDLAKMLREKYPEYNIPAR-FP-GIDEDLKSVEFSSK 295 (351)
T ss_pred HHHHHHHHHHhcCcCc-------------CceE-EecCCCcCHHHHHHHHHHhCcccCCCCC-CC-CcCcccccccCChH
Confidence 9999999999986431 1468 55667799999999999988632 1111 11 12234445567888
Q ss_pred HHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 383 LAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 383 ~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
++ ++|||+|+++++++|+++++|+++....
T Consensus 296 k~-~~lG~~p~~~l~egl~~~i~~~~~~~~~ 325 (351)
T PLN02650 296 KL-TDLGFTFKYSLEDMFDGAIETCREKGLI 325 (351)
T ss_pred HH-HHhCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 87 5799999999999999999999875543
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=308.02 Aligned_cols=302 Identities=19% Similarity=0.225 Sum_probs=225.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++|+||||||+||||++|+++|+++|++|++++|+......... .........+++++.+|++|.+.+.++++++ |+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d~ 79 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEH-LLALDGAKERLHLFKANLLEEGSFDSVVDGC--EG 79 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHH-HHhccCCCCceEEEeccccCcchHHHHHcCC--CE
Confidence 46899999999999999999999999999999997543221111 1100011247899999999999999999976 99
Q ss_pred EEEcccccCchhhccChH-HHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCc--ccCCC---CCCCCCCCCCCCCC---
Q 042406 158 VMHLAAQAGVRYAMQNPN-SYVESNIAGFVNLLETCKSS-DPQPAIVWASSSS--VYGVN---KKVPFSEKDRTDQP--- 227 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~-~~~~~N~~g~~~ll~a~~~~-~~~~~~v~~SS~~--vyg~~---~~~~~~e~~~~~~~--- 227 (424)
|||+|+.... ...++. ..+++|+.|+.+++++|.+. +++ +||++||.+ +|+.. ...+++|+.+. .|
T Consensus 80 Vih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~-~p~~~ 155 (322)
T PLN02662 80 VFHTASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTSSMAAVAYNGKPLTPDVVVDETWFS-DPAFC 155 (322)
T ss_pred EEEeCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEccCHHHhcCCCcCCCCCCcCCcccCC-ChhHh
Confidence 9999997532 233443 78999999999999999887 665 999999976 46532 12345665443 22
Q ss_pred ---CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-CcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 228 ---ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD-MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 228 ---~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
.+.|+.+|.++|.+++.+.++++++++++||+++|||+..+. .....++..++.+... + +++.++|+|+
T Consensus 156 ~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~i~v 228 (322)
T PLN02662 156 EESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQT--F-----PNASYRWVDV 228 (322)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCcc--C-----CCCCcCeEEH
Confidence 358999999999999999888899999999999999975432 2333445555555431 1 2457899999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHH
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISL 383 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~ 383 (424)
+|+|++++.+++.+... +.||++ +..+++.|+++.+.+.++... ......+...+.....+|++|
T Consensus 229 ~Dva~a~~~~~~~~~~~-------------~~~~~~-g~~~s~~e~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~d~~k 293 (322)
T PLN02662 229 RDVANAHIQAFEIPSAS-------------GRYCLV-ERVVHYSEVVKILHELYPTLQ-LPEKCADDKPYVPTYQVSKEK 293 (322)
T ss_pred HHHHHHHHHHhcCcCcC-------------CcEEEe-CCCCCHHHHHHHHHHHCCCCC-CCCCCCCccccccccccChHH
Confidence 99999999999865321 468887 467999999999999987421 111111112244556799999
Q ss_pred HHhHcCCcccCCHHHHHHHHHHHHHHH
Q 042406 384 AQRELGYMPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 384 ~~~~LG~~p~~~l~~~l~~~v~~~~~~ 410 (424)
+++ |||.+ ++++++|+++++||+++
T Consensus 294 ~~~-lg~~~-~~~~~~l~~~~~~~~~~ 318 (322)
T PLN02662 294 AKS-LGIEF-IPLEVSLKDTVESLKEK 318 (322)
T ss_pred HHH-hCCcc-ccHHHHHHHHHHHHHHc
Confidence 985 99997 49999999999999864
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=303.61 Aligned_cols=302 Identities=33% Similarity=0.560 Sum_probs=246.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||+||||++|+++|+++|++|++++|......... .++.++.+|+.|.+.+.+.++..+ |+||
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~-d~vi 69 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL----------SGVEFVVLDLTDRDLVDELAKGVP-DAVI 69 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc----------cccceeeecccchHHHHHHHhcCC-CEEE
Confidence 35999999999999999999999999999999654322111 467899999999988888888665 9999
Q ss_pred EcccccCchhhcc-ChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCC-CCCCCCCC-CCCCCCCChHHHHHH
Q 042406 160 HLAAQAGVRYAMQ-NPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVN-KKVPFSEK-DRTDQPASLYAATKK 236 (424)
Q Consensus 160 ~~Ag~~~~~~~~~-~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~-~~~~~~e~-~~~~~~~~~Y~~sK~ 236 (424)
|+|+......... ++...+.+|+.|+.+++++|++.+++ +|||.||.++|+.. ...+++|+ .+. .|.+.|+.||.
T Consensus 70 h~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~-~~v~~ss~~~~~~~~~~~~~~E~~~~~-~p~~~Yg~sK~ 147 (314)
T COG0451 70 HLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVK-RFVFASSVSVVYGDPPPLPIDEDLGPP-RPLNPYGVSKL 147 (314)
T ss_pred EccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCCCceECCCCCCCCcccccCCC-CCCCHHHHHHH
Confidence 9999876544333 45679999999999999999997775 99999988888754 33366776 344 66669999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC---CcHHHHHHHHHcCCc-eeEEecCCCCccccccccHHHHHHHHHH
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD---MAYFFFTRDIIRGKR-ITVYEAPDGASVARDFTYIDDIVKGCLA 312 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 312 (424)
++|..+..+....+++++++||++||||+.... .+...++..+..+.+ .... +++...++++|++|++++++.
T Consensus 148 ~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~D~a~~~~~ 224 (314)
T COG0451 148 AAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIG---GDGSQTRDFVYVDDVADALLL 224 (314)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEe---CCCceeEeeEeHHHHHHHHHH
Confidence 999999999987799999999999999987765 455556666777877 3443 567888999999999999999
Q ss_pred HhhhccccCCCCCCCCCCCCcceEEcCCCC-cccHHHHHHHHHHHhCcccc-cccccC-CCCCCcccccCChHHHHhHcC
Q 042406 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNTT-PVPVSRLVSLLEKILKVKAE-TKVLPL-PRNGDVQFTHANISLAQRELG 389 (424)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~s~~el~~~i~~~~g~~~~-~~~~~~-~~~~~~~~~~~d~s~~~~~LG 389 (424)
+++++.. ..||++++. .+++.|+++.+.+.+|.+.. +...+. ...........|.++++..||
T Consensus 225 ~~~~~~~--------------~~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 290 (314)
T COG0451 225 ALENPDG--------------GVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALG 290 (314)
T ss_pred HHhCCCC--------------cEEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhC
Confidence 9998752 289999987 89999999999999998866 333332 233344456789999999999
Q ss_pred CcccCCHHHHHHHHHHHHHHHh
Q 042406 390 YMPTTDLETGLKKFVRWYLSYY 411 (424)
Q Consensus 390 ~~p~~~l~~~l~~~v~~~~~~~ 411 (424)
|.|.+++++++.++++|+....
T Consensus 291 ~~p~~~~~~~i~~~~~~~~~~~ 312 (314)
T COG0451 291 WEPKVSLEEGLADTLEWLLKKL 312 (314)
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999998764
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=305.92 Aligned_cols=302 Identities=17% Similarity=0.228 Sum_probs=224.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
..+|+|+||||+||||++++++|+++|++|+++.|+.+............ ....+++++.+|++|.+++.++++++ |
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~--d 79 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALD-GAKERLKLFKADLLEESSFEQAIEGC--D 79 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhcc-CCCCceEEEecCCCCcchHHHHHhCC--C
Confidence 35789999999999999999999999999999998765432211111100 11246899999999999999999976 9
Q ss_pred EEEEcccccCchhhccCh-HHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCccc--CCC---CCCCCCCCCCCC----
Q 042406 157 HVMHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLETCKSS-DPQPAIVWASSSSVY--GVN---KKVPFSEKDRTD---- 225 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~-~~~~~~N~~g~~~ll~a~~~~-~~~~~~v~~SS~~vy--g~~---~~~~~~e~~~~~---- 225 (424)
+|||+|+.... ...++ ...+++|+.|+.+++++|++. +++ +||++||.++| +.. ...+++|+++..
T Consensus 80 ~vih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~-rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~ 156 (322)
T PLN02986 80 AVFHTASPVFF--TVKDPQTELIDPALKGTINVLNTCKETPSVK-RVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLC 156 (322)
T ss_pred EEEEeCCCcCC--CCCCchhhhhHHHHHHHHHHHHHHHhcCCcc-EEEEecchhheecCCccCCCCCCcCcccCCChHHh
Confidence 99999997432 22333 357899999999999999986 554 99999998764 322 123456655431
Q ss_pred -CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-CcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 226 -QPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD-MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 226 -~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
.+.+.|+.||.++|.+++++.++++++++++||++||||...+. .....++..+..+.+. + +.+.++|||+
T Consensus 157 ~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~--~-----~~~~~~~v~v 229 (322)
T PLN02986 157 RETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNL--F-----NNRFYRFVDV 229 (322)
T ss_pred hccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCC--C-----CCcCcceeEH
Confidence 23578999999999999999988899999999999999976432 2233455566666543 2 2456899999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCccc--ccCCh
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQF--THANI 381 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~--~~~d~ 381 (424)
+|+|++++.+++.+.. ++.||++ ++.+|+.|+++++.+.++. ..+... ....+... ...|.
T Consensus 230 ~Dva~a~~~al~~~~~-------------~~~yni~-~~~~s~~e~~~~i~~~~~~-~~~~~~--~~~~~~~~~~~~~d~ 292 (322)
T PLN02986 230 RDVALAHIKALETPSA-------------NGRYIID-GPIMSVNDIIDILRELFPD-LCIADT--NEESEMNEMICKVCV 292 (322)
T ss_pred HHHHHHHHHHhcCccc-------------CCcEEEe-cCCCCHHHHHHHHHHHCCC-CCCCCC--CccccccccCCccCH
Confidence 9999999999987542 1579995 5679999999999999873 221111 11222222 24788
Q ss_pred HHHHhHcCCcccCCHHHHHHHHHHHHHHH
Q 042406 382 SLAQRELGYMPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 382 s~~~~~LG~~p~~~l~~~l~~~v~~~~~~ 410 (424)
+|++ +|||+|+ +++|+|+++++|+++.
T Consensus 293 ~~~~-~lg~~~~-~l~e~~~~~~~~~~~~ 319 (322)
T PLN02986 293 EKVK-NLGVEFT-PMKSSLRDTILSLKEK 319 (322)
T ss_pred HHHH-HcCCccc-CHHHHHHHHHHHHHHc
Confidence 9885 5999997 9999999999999873
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=305.22 Aligned_cols=313 Identities=28% Similarity=0.447 Sum_probs=242.4
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMH 160 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~ 160 (424)
+||||||+|+||++++++|+++|++|++++|............ ....+++++.+|+.|.+++.++++..++|+|||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~ 76 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRG----ERITRVTFVEGDLRDRELLDRLFEEHKIDAVIH 76 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhh----ccccceEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 4899999999999999999999999999876443211111100 011267889999999999999998767899999
Q ss_pred cccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 042406 161 LAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEA 240 (424)
Q Consensus 161 ~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~ 240 (424)
|||.........++...+..|+.++.+++++|.+.+.+ +||++||.++|+.....+++|+++. .|.+.|+.+|.++|.
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~ss~~~~g~~~~~~~~e~~~~-~~~~~y~~sK~~~e~ 154 (328)
T TIGR01179 77 FAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK-KFIFSSSAAVYGEPSSIPISEDSPL-GPINPYGRSKLMSER 154 (328)
T ss_pred CccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC-EEEEecchhhcCCCCCCCccccCCC-CCCCchHHHHHHHHH
Confidence 99986544444566788999999999999999998875 9999999999987665677777765 577899999999999
Q ss_pred HHHHHHHH-hCCcEEEEEeccccCCCCCC---------CCcHHHHHHHHH-cCCceeEEec---CCCCccccccccHHHH
Q 042406 241 IAHAYNHI-YGLSITGLRFFTVYGPWGRP---------DMAYFFFTRDII-RGKRITVYEA---PDGASVARDFTYIDDI 306 (424)
Q Consensus 241 ~~~~~~~~-~~i~~~~vrp~~v~G~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~v~Dv 306 (424)
+++.++++ .+++++++||+.+|||.... ..++..+..... ...++.++.. .+.++..++|||++|+
T Consensus 155 ~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~ 234 (328)
T TIGR01179 155 ILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDL 234 (328)
T ss_pred HHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHH
Confidence 99999877 69999999999999985321 122333444433 2344444321 1246778999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHh
Q 042406 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQR 386 (424)
Q Consensus 307 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~ 386 (424)
+++++.++...... ..+++||+++++++|+.|+++.+.+.+|.+.++...+. ...+......|++++++
T Consensus 235 a~~~~~~~~~~~~~----------~~~~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 303 (328)
T TIGR01179 235 ADAHLAALEYLLNG----------GESHVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPR-RPGDPASLVADASKIRR 303 (328)
T ss_pred HHHHHHHHhhhhcC----------CCcceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCC-CCccccchhcchHHHHH
Confidence 99999998764321 12379999999999999999999999998776654432 23333445679999999
Q ss_pred HcCCcccCC-HHHHHHHHHHHHHHH
Q 042406 387 ELGYMPTTD-LETGLKKFVRWYLSY 410 (424)
Q Consensus 387 ~LG~~p~~~-l~~~l~~~v~~~~~~ 410 (424)
+|||+|.++ ++++|+++++|+++|
T Consensus 304 ~lg~~p~~~~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 304 ELGWQPKYTDLEIIIKTAWRWESRN 328 (328)
T ss_pred HhCCCCCcchHHHHHHHHHHHHhcC
Confidence 999999987 999999999999864
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=302.95 Aligned_cols=298 Identities=27% Similarity=0.420 Sum_probs=233.6
Q ss_pred EEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc--cCccEE
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV--VAFTHV 158 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~--~~~d~v 158 (424)
||||||+||||+++++.|+++|+ .|++++|..... ... . .....+..|+.+.+.++.+.+. .++|+|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-----~~~--~---~~~~~~~~d~~~~~~~~~~~~~~~~~~D~v 70 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-----KFL--N---LADLVIADYIDKEDFLDRLEKGAFGKIEAI 70 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-----hhh--h---hhheeeeccCcchhHHHHHHhhccCCCCEE
Confidence 69999999999999999999997 788888754311 000 0 0113567889888888777652 367999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
||+|+.... ...+++..+++|+.++.+++++|++.+. +||++||.++|+... .++.|++++..|.+.|+.+|.++
T Consensus 71 vh~A~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~-~~~~e~~~~~~p~~~Y~~sK~~~ 145 (314)
T TIGR02197 71 FHQGACSDT--TETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYASSAATYGDGE-AGFREGRELERPLNVYGYSKFLF 145 (314)
T ss_pred EECccccCc--cccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEccHHhcCCCC-CCcccccCcCCCCCHHHHHHHHH
Confidence 999997542 3456778999999999999999998874 799999999998653 45667765546788999999999
Q ss_pred HHHHHHHHH--HhCCcEEEEEeccccCCCCCCC----CcHHHHHHHHHcCCceeEEec---CCCCccccccccHHHHHHH
Q 042406 239 EAIAHAYNH--IYGLSITGLRFFTVYGPWGRPD----MAYFFFTRDIIRGKRITVYEA---PDGASVARDFTYIDDIVKG 309 (424)
Q Consensus 239 e~~~~~~~~--~~~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~v~Dva~a 309 (424)
|.+++++.. ..+++++++||+.||||+.... ..+..++..+..+.++.++.. .+++++.++|+|++|++++
T Consensus 146 e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~ 225 (314)
T TIGR02197 146 DQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDV 225 (314)
T ss_pred HHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHH
Confidence 999987532 2368999999999999986432 334566777788887776531 2467888999999999999
Q ss_pred HHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCC---CCcccccCChHHHHh
Q 042406 310 CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN---GDVQFTHANISLAQR 386 (424)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~~d~s~~~~ 386 (424)
++.++.. .. +++||+++++++|+.|+++.+.+.+|.+..+...+.|.. ........|++|+++
T Consensus 226 i~~~~~~-~~-------------~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 291 (314)
T TIGR02197 226 NLWLLEN-GV-------------SGIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRA 291 (314)
T ss_pred HHHHHhc-cc-------------CceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHH
Confidence 9999986 21 169999999999999999999999997765554444432 122345689999999
Q ss_pred HcCCcccCCHHHHHHHHHHHHH
Q 042406 387 ELGYMPTTDLETGLKKFVRWYL 408 (424)
Q Consensus 387 ~LG~~p~~~l~~~l~~~v~~~~ 408 (424)
.|||.|+++++|+++++++|++
T Consensus 292 ~l~~~p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 292 AGYYGPFTTLEEGVKDYVQWLL 313 (314)
T ss_pred hcCCCCcccHHHHHHHHHHHHh
Confidence 9999999999999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=292.69 Aligned_cols=276 Identities=21% Similarity=0.254 Sum_probs=225.4
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMH 160 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~ 160 (424)
+||||||+||||++++++|+++|++|++++|. .+|+.|.+++.+++++.++|+|||
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~------------------------~~d~~~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS------------------------QLDLTDPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc------------------------ccCCCCHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999999999999999882 479999999999999888999999
Q ss_pred cccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 042406 161 LAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEA 240 (424)
Q Consensus 161 ~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~ 240 (424)
+|+.........+++..+++|+.++.+++++|++.+. +||++||.++|+.....+++|+++. .|.+.|+.+|.++|.
T Consensus 57 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~Ss~~vy~~~~~~~~~E~~~~-~~~~~Y~~~K~~~E~ 133 (287)
T TIGR01214 57 TAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHISTDYVFDGEGKRPYREDDAT-NPLNVYGQSKLAGEQ 133 (287)
T ss_pred CCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeeeeeecCCCCCCCCCCCCC-CCcchhhHHHHHHHH
Confidence 9997654444456678899999999999999998873 8999999999987666788888766 678899999999999
Q ss_pred HHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhcccc
Q 042406 241 IAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKS 320 (424)
Q Consensus 241 ~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~ 320 (424)
+++.+ +.+++++||++||||+.. ..+...++..+..+.++.+. ++..++++|++|+|++++.+++....
T Consensus 134 ~~~~~----~~~~~ilR~~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~v~Dva~a~~~~~~~~~~- 202 (287)
T TIGR01214 134 AIRAA----GPNALIVRTSWLYGGGGG-RNFVRTMLRLAGRGEELRVV-----DDQIGSPTYAKDLARVIAALLQRLAR- 202 (287)
T ss_pred HHHHh----CCCeEEEEeeecccCCCC-CCHHHHHHHHhhcCCCceEe-----cCCCcCCcCHHHHHHHHHHHHhhccC-
Confidence 88876 789999999999999753 33455667777777777664 24678999999999999999976521
Q ss_pred CCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccccc------cc---CC-CCCCcccccCChHHHHhHcCC
Q 042406 321 TGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKV------LP---LP-RNGDVQFTHANISLAQRELGY 390 (424)
Q Consensus 321 ~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~------~~---~~-~~~~~~~~~~d~s~~~~~LG~ 390 (424)
.+++||+++++.+|+.|+++.+.+.+|.+..... .. .+ .........+|++|++++|||
T Consensus 203 -----------~~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~ 271 (287)
T TIGR01214 203 -----------ARGVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGT 271 (287)
T ss_pred -----------CCCeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCC
Confidence 1279999999999999999999999997653111 00 01 112234467999999999999
Q ss_pred cccCCHHHHHHHHHHH
Q 042406 391 MPTTDLETGLKKFVRW 406 (424)
Q Consensus 391 ~p~~~l~~~l~~~v~~ 406 (424)
.+ ++++++|.++++.
T Consensus 272 ~~-~~~~~~l~~~~~~ 286 (287)
T TIGR01214 272 PL-PHWREALRAYLQE 286 (287)
T ss_pred CC-ccHHHHHHHHHhh
Confidence 44 5999999988753
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=295.53 Aligned_cols=280 Identities=26% Similarity=0.389 Sum_probs=216.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||+|+||++|++.|.++|++|+.+.|. ..|+.|.+++.++++..+||+||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~------------------------~~dl~d~~~~~~~~~~~~pd~Vi 56 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS------------------------DLDLTDPEAVAKLLEAFKPDVVI 56 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT------------------------CS-TTSHHHHHHHHHHH--SEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch------------------------hcCCCCHHHHHHHHHHhCCCeEe
Confidence 789999999999999999999999999999872 57999999999999999999999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
||||...+..++.+++..+.+|+.++.+|+++|.+.+. ++||+||..||+.....|+.|++++ .|.+.||.+|+++|
T Consensus 57 n~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~--~li~~STd~VFdG~~~~~y~E~d~~-~P~~~YG~~K~~~E 133 (286)
T PF04321_consen 57 NCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA--RLIHISTDYVFDGDKGGPYTEDDPP-NPLNVYGRSKLEGE 133 (286)
T ss_dssp E------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEEEEGGGS-SSTSSSB-TTS-----SSHHHHHHHHHH
T ss_pred ccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC--cEEEeeccEEEcCCcccccccCCCC-CCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999986 8999999999988878889999987 89999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
..+++.. -+..|+|++.+||+. ...++..++..+..++.+.++ .+..++.+|++|+|++++.++++...
T Consensus 134 ~~v~~~~----~~~~IlR~~~~~g~~--~~~~~~~~~~~~~~~~~i~~~-----~d~~~~p~~~~dlA~~i~~l~~~~~~ 202 (286)
T PF04321_consen 134 QAVRAAC----PNALILRTSWVYGPS--GRNFLRWLLRRLRQGEPIKLF-----DDQYRSPTYVDDLARVILELIEKNLS 202 (286)
T ss_dssp HHHHHH-----SSEEEEEE-SEESSS--SSSHHHHHHHHHHCTSEEEEE-----SSCEE--EEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc----CCEEEEecceecccC--CCchhhhHHHHHhcCCeeEee-----CCceeCCEEHHHHHHHHHHHHHhccc
Confidence 9998853 278999999999993 345777888899999999986 47789999999999999999998764
Q ss_pred cCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccc-ccccccCCC----CCCcccccCChHHHHhHcCCcccC
Q 042406 320 STGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKA-ETKVLPLPR----NGDVQFTHANISLAQRELGYMPTT 394 (424)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~-~~~~~~~~~----~~~~~~~~~d~s~~~~~LG~~p~~ 394 (424)
.. ..+++||+++++.+|..|+++.+.+.+|.+. .+...+... ........+|++|+++.||.++.
T Consensus 203 ~~---------~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~- 272 (286)
T PF04321_consen 203 GA---------SPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPP- 272 (286)
T ss_dssp -G---------GG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS----
T ss_pred cc---------ccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCCCc-
Confidence 11 1237999999999999999999999999877 333222111 12334567999999999999988
Q ss_pred CHHHHHHHHHHHH
Q 042406 395 DLETGLKKFVRWY 407 (424)
Q Consensus 395 ~l~~~l~~~v~~~ 407 (424)
+++++|+++++.|
T Consensus 273 ~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 273 PWREGLEELVKQY 285 (286)
T ss_dssp BHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8999999999876
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=293.69 Aligned_cols=296 Identities=25% Similarity=0.309 Sum_probs=229.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|+||||+||||+++++.|+++|++|++++|+.+... .....+++++.+|+.|.+++.++++++ |+||
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~~D~~~~~~l~~~~~~~--d~vi 69 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRR---------NLEGLDVEIVEGDLRDPASLRKAVAGC--RALF 69 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccc---------ccccCCceEEEeeCCCHHHHHHHHhCC--CEEE
Confidence 57999999999999999999999999999999654211 112236889999999999999999876 9999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC-CCCCCCCCCCCCCC--CCChHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV-NKKVPFSEKDRTDQ--PASLYAATKK 236 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~-~~~~~~~e~~~~~~--~~~~Y~~sK~ 236 (424)
|+|+... ....+++..+++|+.++.++++++++.+++ +||++||.++|+. ....+++|+.+... ..+.|+.+|.
T Consensus 70 ~~a~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~ 146 (328)
T TIGR03466 70 HVAADYR--LWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKF 146 (328)
T ss_pred Eeceecc--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHH
Confidence 9998642 234567889999999999999999998875 9999999999985 34456777665421 2468999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhh
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 316 (424)
++|.+++++..+++++++++||+++|||+.........++...+.+.. +.+. +...+|+|++|+|++++.+++.
T Consensus 147 ~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~i~v~D~a~a~~~~~~~ 220 (328)
T TIGR03466 147 LAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKM-PAYV-----DTGLNLVHVDDVAEGHLLALER 220 (328)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCC-ceee-----CCCcceEEHHHHHHHHHHHHhC
Confidence 999999999888899999999999999976533333334444444432 2221 2336899999999999999876
Q ss_pred ccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCC---------------CCC--------
Q 042406 317 AKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR---------------NGD-------- 373 (424)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~---------------~~~-------- 373 (424)
.. .++.|+++ ++.+++.|+++.+.+.+|.+......|... ...
T Consensus 221 ~~-------------~~~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (328)
T TIGR03466 221 GR-------------IGERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGV 286 (328)
T ss_pred CC-------------CCceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 42 12678886 678999999999999999765443322110 000
Q ss_pred ---cccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHH
Q 042406 374 ---VQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 374 ---~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~ 410 (424)
.....+|++|+++.|||.|. +++++|+++++||+++
T Consensus 287 ~~~~~~~~~d~~k~~~~lg~~p~-~~~~~i~~~~~~~~~~ 325 (328)
T TIGR03466 287 RMAKKKMFFSSAKAVRELGYRQR-PAREALRDAVEWFRAN 325 (328)
T ss_pred HHHhccCCCChHHHHHHcCCCCc-CHHHHHHHHHHHHHHh
Confidence 02356899999999999996 9999999999999874
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=279.93 Aligned_cols=309 Identities=20% Similarity=0.232 Sum_probs=229.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.+|+|+||||+||||++|++.|+++||.|++..|+.+...... ..+.-.....++..+.+|+.|++++.++++++ |.
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~-~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc--dg 81 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTE-HLRKLEGAKERLKLFKADLLDEGSFDKAIDGC--DG 81 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHH-HHHhcccCcccceEEeccccccchHHHHHhCC--CE
Confidence 6789999999999999999999999999999999876532211 11111123456999999999999999999988 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCC-----CCCCCCCCCCCCC-----C
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVN-----KKVPFSEKDRTDQ-----P 227 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~-----~~~~~~e~~~~~~-----~ 227 (424)
|||+|..+...... ...+..+.++.||.|++++|++....+|||++||.+....+ ....++|+.+.+. .
T Consensus 82 VfH~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~ 160 (327)
T KOG1502|consen 82 VFHTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCK 160 (327)
T ss_pred EEEeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhh
Confidence 99999987654222 23379999999999999999999844599999997665432 2346777766421 1
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-cHHHHHHHHHcCCceeEEecCCCCccccccccHHHH
Q 042406 228 ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDM-AYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDI 306 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 306 (424)
...|+.||..+|..+.+++++.++..+.|.|+.|+||...++. ........+++|..-.. .+....||||+|+
T Consensus 161 ~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~------~n~~~~~VdVrDV 234 (327)
T KOG1502|consen 161 KLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETY------PNFWLAFVDVRDV 234 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccC------CCCceeeEeHHHH
Confidence 2679999999999999999999999999999999999876532 12234455666643222 2334449999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHh
Q 042406 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQR 386 (424)
Q Consensus 307 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~ 386 (424)
|.||+.+++++... +.|.+.+. ..++.|+++++.+.++.-...................+++|+++
T Consensus 235 A~AHv~a~E~~~a~-------------GRyic~~~-~~~~~ei~~~l~~~~P~~~ip~~~~~~~~~~~~~~~~~~~k~k~ 300 (327)
T KOG1502|consen 235 ALAHVLALEKPSAK-------------GRYICVGE-VVSIKEIADILRELFPDYPIPKKNAEEHEGFLTSFKVSSEKLKS 300 (327)
T ss_pred HHHHHHHHcCcccC-------------ceEEEecC-cccHHHHHHHHHHhCCCCCCCCCCCccccccccccccccHHHHh
Confidence 99999999998743 45666554 46699999999999885541111111111222223578899877
Q ss_pred HcCCcccCCHHHHHHHHHHHHHHHh
Q 042406 387 ELGYMPTTDLETGLKKFVRWYLSYY 411 (424)
Q Consensus 387 ~LG~~p~~~l~~~l~~~v~~~~~~~ 411 (424)
..|+... +++|++.++++++++..
T Consensus 301 lg~~~~~-~l~e~~~dt~~sl~~~~ 324 (327)
T KOG1502|consen 301 LGGFKFR-PLEETLSDTVESLREKG 324 (327)
T ss_pred cccceec-ChHHHHHHHHHHHHHhc
Confidence 5557666 99999999999998753
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=273.23 Aligned_cols=274 Identities=23% Similarity=0.278 Sum_probs=238.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|||||++|.+|.+|.+.|. .+++|+.++|.. +|++|++.+.+++++.+||+||
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~------------------------~Ditd~~~v~~~i~~~~PDvVI 55 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAE------------------------LDITDPDAVLEVIRETRPDVVI 55 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCcc------------------------ccccChHHHHHHHHhhCCCEEE
Confidence 459999999999999999998 778999998721 7999999999999999999999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|+|+...++.++.+++..+.+|..|+.|++++|.+.|. .+||+||..||....+.|+.|+|++ .|.+.||.||+++|
T Consensus 56 n~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga--~lVhiSTDyVFDG~~~~~Y~E~D~~-~P~nvYG~sKl~GE 132 (281)
T COG1091 56 NAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA--RLVHISTDYVFDGEKGGPYKETDTP-NPLNVYGRSKLAGE 132 (281)
T ss_pred ECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC--eEEEeecceEecCCCCCCCCCCCCC-CChhhhhHHHHHHH
Confidence 99999999999999999999999999999999999997 7999999999998888899999988 99999999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
..+++. +-+.+|+|.+++||..+ .++...+++....++.+.++ .++..+.+++.|+|+++..+++....
T Consensus 133 ~~v~~~----~~~~~I~Rtswv~g~~g--~nFv~tml~la~~~~~l~vv-----~Dq~gsPt~~~dlA~~i~~ll~~~~~ 201 (281)
T COG1091 133 EAVRAA----GPRHLILRTSWVYGEYG--NNFVKTMLRLAKEGKELKVV-----DDQYGSPTYTEDLADAILELLEKEKE 201 (281)
T ss_pred HHHHHh----CCCEEEEEeeeeecCCC--CCHHHHHHHHhhcCCceEEE-----CCeeeCCccHHHHHHHHHHHHhcccc
Confidence 999887 45779999999999866 55677888888899999886 58899999999999999999988753
Q ss_pred cCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccc-cccC---CC-CCCcccccCChHHHHhHcCCcccC
Q 042406 320 STGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETK-VLPL---PR-NGDVQFTHANISLAQRELGYMPTT 394 (424)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~-~~~~---~~-~~~~~~~~~d~s~~~~~LG~~p~~ 394 (424)
. ++||+++...+||-|+++.|.+.++.+.... .... |. ...+.+..+|+.|+...+|+.|.
T Consensus 202 ~-------------~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~- 267 (281)
T COG1091 202 G-------------GVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLP- 267 (281)
T ss_pred C-------------cEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCc-
Confidence 2 5999999887999999999999998655332 1111 11 12333467999999999999888
Q ss_pred CHHHHHHHHHHH
Q 042406 395 DLETGLKKFVRW 406 (424)
Q Consensus 395 ~l~~~l~~~v~~ 406 (424)
+|+++++++++.
T Consensus 268 ~w~~~l~~~~~~ 279 (281)
T COG1091 268 EWREALKALLDE 279 (281)
T ss_pred cHHHHHHHHHhh
Confidence 899999888764
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=289.45 Aligned_cols=276 Identities=19% Similarity=0.199 Sum_probs=217.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
+++|+||||||+||||++|+++|+++| ++|++++|+...... .. ......++.++.+|++|.+.+.++++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~----~~-~~~~~~~~~~v~~Dl~d~~~l~~~~~~i- 75 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWE----MQ-QKFPAPCLRFFIGDVRDKERLTRALRGV- 75 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHH----HH-HHhCCCcEEEEEccCCCHHHHHHHHhcC-
Confidence 467899999999999999999999987 789999986432111 11 1112246899999999999999999865
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
|+|||+||.........+++..+++|+.|+.+++++|++.+.+ +||++||...+ .|.+.|+.|
T Consensus 76 -D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~SS~~~~---------------~p~~~Y~~s 138 (324)
T TIGR03589 76 -DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALSTDKAA---------------NPINLYGAT 138 (324)
T ss_pred -CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeCCCCC---------------CCCCHHHHH
Confidence 9999999986554455667889999999999999999998875 99999995332 456789999
Q ss_pred HHHHHHHHHHHHH---HhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCC-ceeEEecCCCCccccccccHHHHHHHH
Q 042406 235 KKAGEAIAHAYNH---IYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGK-RITVYEAPDGASVARDFTYIDDIVKGC 310 (424)
Q Consensus 235 K~~~e~~~~~~~~---~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~Dva~a~ 310 (424)
|+++|.+++.++. ..|++++++|||+||||++ .+++.+...+..+. +++++ ++++.++|+|++|+|+++
T Consensus 139 K~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~---~~i~~~~~~~~~~~~~~~i~----~~~~~r~~i~v~D~a~a~ 211 (324)
T TIGR03589 139 KLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRG---SVVPFFKSLKEEGVTELPIT----DPRMTRFWITLEQGVNFV 211 (324)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEEeecceeCCCC---CcHHHHHHHHHhCCCCeeeC----CCCceEeeEEHHHHHHHH
Confidence 9999999988653 4589999999999999864 35667777777775 56663 577889999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCc-ccccCChHHHHhHcC
Q 042406 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDV-QFTHANISLAQRELG 389 (424)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~-~~~~~d~s~~~~~LG 389 (424)
+.+++... .+++| ++++..+++.|+++.+.+..+.. ..+ .+.++. .....|.+++++.||
T Consensus 212 ~~al~~~~-------------~~~~~-~~~~~~~sv~el~~~i~~~~~~~----~~~-~~~g~~~~~~~~~~~~~~~~lg 272 (324)
T TIGR03589 212 LKSLERML-------------GGEIF-VPKIPSMKITDLAEAMAPECPHK----IVG-IRPGEKLHEVMITEDDARHTYE 272 (324)
T ss_pred HHHHhhCC-------------CCCEE-ccCCCcEEHHHHHHHHHhhCCee----EeC-CCCCchhHhhhcChhhhhhhcC
Confidence 99997632 11678 46667799999999999865322 222 234443 335689999999999
Q ss_pred CcccCCHHHHHH
Q 042406 390 YMPTTDLETGLK 401 (424)
Q Consensus 390 ~~p~~~l~~~l~ 401 (424)
|.|++++++++.
T Consensus 273 ~~~~~~l~~~~~ 284 (324)
T TIGR03589 273 LGDYYAILPSIS 284 (324)
T ss_pred CCCeEEEccccc
Confidence 999999999885
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=284.66 Aligned_cols=261 Identities=25% Similarity=0.270 Sum_probs=202.9
Q ss_pred EEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEE
Q 042406 83 LVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMH 160 (424)
Q Consensus 83 lItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~ 160 (424)
|||||+||||++|+++|+++| ++|+++++....... ..........++++|++|++++.++++++ |+|||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~------~~~~~~~~~~~~~~Di~d~~~l~~a~~g~--d~V~H 72 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL------KDLQKSGVKEYIQGDITDPESLEEALEGV--DVVFH 72 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc------hhhhcccceeEEEeccccHHHHHHHhcCC--ceEEE
Confidence 699999999999999999999 799999985542110 11112233449999999999999999988 99999
Q ss_pred cccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-CCCC---CCCCCC-CCCCChHHHHH
Q 042406 161 LAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNK-KVPF---SEKDRT-DQPASLYAATK 235 (424)
Q Consensus 161 ~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~-~~~~---~e~~~~-~~~~~~Y~~sK 235 (424)
+|++..... ....+.++++|+.||.|++++|++.+++ +|||+||.++++... ..++ +|+.+. ..+.+.|+.||
T Consensus 73 ~Aa~~~~~~-~~~~~~~~~vNV~GT~nvl~aa~~~~Vk-rlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK 150 (280)
T PF01073_consen 73 TAAPVPPWG-DYPPEEYYKVNVDGTRNVLEAARKAGVK-RLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESK 150 (280)
T ss_pred eCccccccC-cccHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHH
Confidence 999865432 3456789999999999999999999986 999999999988622 2333 333322 23568899999
Q ss_pred HHHHHHHHHHHH---Hh--CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHH
Q 042406 236 KAGEAIAHAYNH---IY--GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310 (424)
Q Consensus 236 ~~~e~~~~~~~~---~~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 310 (424)
+.+|+++.+++. +. .+++++|||..||||++.. +.+.+...+..+...... ++++...+++||+|+|.||
T Consensus 151 ~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~--~~~~~~~~~~~g~~~~~~---g~~~~~~~~vyV~NvA~ah 225 (280)
T PF01073_consen 151 ALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQR--LVPRLVKMVRSGLFLFQI---GDGNNLFDFVYVENVAHAH 225 (280)
T ss_pred HHHHHHHHhhcccccccccceeEEEEeccEEeCccccc--ccchhhHHHHhcccceee---cCCCceECcEeHHHHHHHH
Confidence 999999999876 22 5999999999999997653 244556666666444443 6778899999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc-HHHHHHHHHHHhCccccc
Q 042406 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP-VSRLVSLLEKILKVKAET 363 (424)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s-~~el~~~i~~~~g~~~~~ 363 (424)
+.+++...... ......|+.|+|++++|+. +.||...+.+.+|.+.+.
T Consensus 226 vlA~~~L~~~~-----~~~~~~G~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 226 VLAAQALLEPG-----KPERVAGQAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred HHHHHHhcccc-----ccccCCCcEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 99887654320 0112556999999999999 999999999999987755
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=293.36 Aligned_cols=291 Identities=21% Similarity=0.231 Sum_probs=222.3
Q ss_pred CCCCeEEEE----cCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHH--HHhhhhccCCeEEEEccCCCHHHHHHHh
Q 042406 77 TRGLTVLVT----GAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKK--ARKGLLERAGVFVIDADINDKSLLDKIF 150 (424)
Q Consensus 77 ~~~~~vlIt----Gg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~v~~~~~Dl~d~~~v~~~~ 150 (424)
..+|+|||| ||+||||++|+++|+++|++|++++|+.......... .....+...+++++.+|+.| +.+++
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~~~~ 126 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD---VKSKV 126 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH---HHhhh
Confidence 445789999 9999999999999999999999999976431110000 00011223468999999987 45555
Q ss_pred hccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCCh
Q 042406 151 NVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL 230 (424)
Q Consensus 151 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~ 230 (424)
...++|+|||+++. +..++.+++++|++.+++ +||++||.++|+.....+..|+++. .|..
T Consensus 127 ~~~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvk-r~V~~SS~~vyg~~~~~p~~E~~~~-~p~~- 187 (378)
T PLN00016 127 AGAGFDVVYDNNGK----------------DLDEVEPVADWAKSPGLK-QFLFCSSAGVYKKSDEPPHVEGDAV-KPKA- 187 (378)
T ss_pred ccCCccEEEeCCCC----------------CHHHHHHHHHHHHHcCCC-EEEEEccHhhcCCCCCCCCCCCCcC-CCcc-
Confidence 44467999999753 134678999999999986 9999999999997665666666544 3322
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHH
Q 042406 231 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 310 (424)
+|..+|.++++ .+++++++||+++|||+... .....++..+..+.++.++ +.+++.++|+|++|+|+++
T Consensus 188 ---sK~~~E~~l~~----~~l~~~ilRp~~vyG~~~~~-~~~~~~~~~~~~~~~i~~~---g~g~~~~~~i~v~Dva~ai 256 (378)
T PLN00016 188 ---GHLEVEAYLQK----LGVNWTSFRPQYIYGPGNNK-DCEEWFFDRLVRGRPVPIP---GSGIQLTQLGHVKDLASMF 256 (378)
T ss_pred ---hHHHHHHHHHH----cCCCeEEEeceeEECCCCCC-chHHHHHHHHHcCCceeec---CCCCeeeceecHHHHHHHH
Confidence 89999987754 48999999999999997643 3445667778888877664 5778899999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCC---------CCCcccccCCh
Q 042406 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR---------NGDVQFTHANI 381 (424)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~---------~~~~~~~~~d~ 381 (424)
+.+++++.. .+++||+++++.+|+.|+++.+.+.+|.+..+...+... +........|+
T Consensus 257 ~~~l~~~~~------------~~~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~ 324 (378)
T PLN00016 257 ALVVGNPKA------------AGQIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASP 324 (378)
T ss_pred HHHhcCccc------------cCCEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCH
Confidence 999987532 237999999999999999999999999876543322111 11123345799
Q ss_pred HHHHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 382 SLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 382 s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
+|++++|||+|+++++|+|+++++||++...
T Consensus 325 ~ka~~~LGw~p~~~l~egl~~~~~~~~~~~~ 355 (378)
T PLN00016 325 RKAKEELGWTPKFDLVEDLKDRYELYFGRGR 355 (378)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999987543
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=290.38 Aligned_cols=300 Identities=15% Similarity=0.123 Sum_probs=219.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHh-hhh--ccCCeEEEEccCCCHHHHHHHhh
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARK-GLL--ERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~--~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
...++|+||||||+||||++|+++|+++|++|+++.|+.+..... ..... ... ...++.++.+|++|.+++.++++
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 356789999999999999999999999999999988864322111 11000 000 01358899999999999999999
Q ss_pred ccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCC--cccCCC--CC--CCCCCCCC-
Q 042406 152 VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS-DPQPAIVWASSS--SVYGVN--KK--VPFSEKDR- 223 (424)
Q Consensus 152 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~~v~~SS~--~vyg~~--~~--~~~~e~~~- 223 (424)
++ |+|||+|+...............++|+.++.+++++|++. +++ +||++||. .+||.. .. ..++|+.+
T Consensus 128 ~~--d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~ 204 (367)
T PLN02686 128 GC--AGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVWRQNYPHDLPPVIDEESWS 204 (367)
T ss_pred hc--cEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcccccCCCCCCcccCCCCCC
Confidence 76 9999999986432211222456788999999999999986 665 99999996 577642 11 23455432
Q ss_pred ----CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 224 ----TDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 224 ----~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
+..|.+.|+.||.++|.+++.+++.+|++++++||++||||+...... ..+..++.+. +.++ ++ ..++
T Consensus 205 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~--~~~~~~~~g~-~~~~---g~--g~~~ 276 (367)
T PLN02686 205 DESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNS--TATIAYLKGA-QEML---AD--GLLA 276 (367)
T ss_pred ChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCC--hhHHHHhcCC-CccC---CC--CCcC
Confidence 224567899999999999999988889999999999999997543221 1122344553 3443 23 3457
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHA 379 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (424)
|+||+|+|++++.+++..... ..+++| +++++.+++.|+++.+.+.+|.+......+...+++......
T Consensus 277 ~v~V~Dva~A~~~al~~~~~~----------~~~~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~~~~~~ 345 (367)
T PLN02686 277 TADVERLAEAHVCVYEAMGNK----------TAFGRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTPARFEL 345 (367)
T ss_pred eEEHHHHHHHHHHHHhccCCC----------CCCCcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCcccccc
Confidence 999999999999999753110 112578 788899999999999999999876654333222577788899
Q ss_pred ChHHHHhHcCCcccCCHH
Q 042406 380 NISLAQRELGYMPTTDLE 397 (424)
Q Consensus 380 d~s~~~~~LG~~p~~~l~ 397 (424)
|++|++++|||.|+-.++
T Consensus 346 d~~kl~~~l~~~~~~~~~ 363 (367)
T PLN02686 346 SNKKLSRLMSRTRRCCYD 363 (367)
T ss_pred cHHHHHHHHHHhhhcccc
Confidence 999999999999985544
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-36 Score=281.05 Aligned_cols=316 Identities=23% Similarity=0.285 Sum_probs=249.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhh--ccCCeEEEEccCCCHHHHHHHhhc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLL--ERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
.++.+++||||+||+|++|+++|++++ .+|+++|..... .....+.. ....+.++++|+.|...+.+++++
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~-----~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~ 76 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQ-----SNLPAELTGFRSGRVTVILGDLLDANSISNAFQG 76 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccc-----cccchhhhcccCCceeEEecchhhhhhhhhhccC
Confidence 456789999999999999999999998 799999985421 11111111 257899999999999999999996
Q ss_pred cCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC--CCCCCh
Q 042406 153 VAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT--DQPASL 230 (424)
Q Consensus 153 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~--~~~~~~ 230 (424)
+ .|+|+|+...+.....+++.++++|+.||.+++++|++.+++ ++||+||.+|+.........+++.+ ....+.
T Consensus 77 ~---~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~-~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~ 152 (361)
T KOG1430|consen 77 A---VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK-RLIYTSSAYVVFGGEPIINGDESLPYPLKHIDP 152 (361)
T ss_pred c---eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCC-EEEEecCceEEeCCeecccCCCCCCCccccccc
Confidence 5 667777665556666688999999999999999999999997 9999999999876554333333322 123368
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHH
Q 042406 231 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 310 (424)
|+.||+.+|.++.+.+...++.++++||..||||++.. ..+.+...+..++.+... +..+...+++++++|+.++
T Consensus 153 Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~--~~~~i~~~~~~g~~~f~~---g~~~~~~~~~~~~Nva~ah 227 (361)
T KOG1430|consen 153 YGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKR--LLPKIVEALKNGGFLFKI---GDGENLNDFTYGENVAWAH 227 (361)
T ss_pred cchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCcc--ccHHHHHHHHccCceEEe---eccccccceEEechhHHHH
Confidence 99999999999999997668999999999999998753 355677778888877665 5668899999999999999
Q ss_pred HHHhhhcc-ccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccc-ccccCC-------------------
Q 042406 311 LAGLDTAK-KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAET-KVLPLP------------------- 369 (424)
Q Consensus 311 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~-~~~~~~------------------- 369 (424)
+.+..... ..+. ..|+.|+|.+++++...+++..+.+.+|...+. ...|..
T Consensus 228 ilA~~aL~~~~~~--------~~Gq~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~ 299 (361)
T KOG1430|consen 228 ILAARALLDKSPS--------VNGQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPY 299 (361)
T ss_pred HHHHHHHHhcCCc--------cCceEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCC
Confidence 98877665 3333 556999999999999999999999999987762 211100
Q ss_pred CCCCc--------ccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhccC
Q 042406 370 RNGDV--------QFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSA 414 (424)
Q Consensus 370 ~~~~~--------~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~~ 414 (424)
.+... ....+++.||+++|||.|..++++++.+++.|+.......
T Consensus 300 ~p~lt~~~v~~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~~ 352 (361)
T KOG1430|consen 300 QPILTRFRVALLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDSA 352 (361)
T ss_pred CCCcChhheeeeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhcc
Confidence 11111 1235899999999999999999999999999998876653
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=269.98 Aligned_cols=233 Identities=33% Similarity=0.509 Sum_probs=205.7
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEEc
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHL 161 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~~ 161 (424)
||||||+||||++|+++|+++|+.|+.+.|.......... ..++.++.+|+.|.+.+.++++..++|+|||+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~--------~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~ 72 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEK--------KLNVEFVIGDLTDKEQLEKLLEKANIDVVIHL 72 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHH--------HTTEEEEESETTSHHHHHHHHHHHTESEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccc--------cceEEEEEeeccccccccccccccCceEEEEe
Confidence 7999999999999999999999999999987653222111 12889999999999999999999899999999
Q ss_pred ccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 042406 162 AAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAI 241 (424)
Q Consensus 162 Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~ 241 (424)
|+.........+....++.|+.++.+++++|++.+. ++||++||+.+|+.....+++|+++. .|.+.|+.+|..+|.+
T Consensus 73 a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS~~~y~~~~~~~~~e~~~~-~~~~~Y~~~K~~~e~~ 150 (236)
T PF01370_consen 73 AAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSSASVYGDPDGEPIDEDSPI-NPLSPYGASKRAAEEL 150 (236)
T ss_dssp BSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGGTSSSSSSBETTSGC-CHSSHHHHHHHHHHHH
T ss_pred eccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccc-cccccccccccccccc
Confidence 998654344467788999999999999999999998 49999999999999877788998877 8889999999999999
Q ss_pred HHHHHHHhCCcEEEEEeccccCCC---CCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 242 AHAYNHIYGLSITGLRFFTVYGPW---GRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 242 ~~~~~~~~~i~~~~vrp~~v~G~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
++.+.++++++++++||+++|||+ .....+++.++..+.+++++.++ +++++.++|+|++|+|++++.+++++.
T Consensus 151 ~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~D~a~~~~~~~~~~~ 227 (236)
T PF01370_consen 151 LRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIP---GDGSQVRDFIHVDDLAEAIVAALENPK 227 (236)
T ss_dssp HHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEE---STSSCEEEEEEHHHHHHHHHHHHHHSC
T ss_pred ccccccccccccccccccccccccccccccccccchhhHHhhcCCccccc---CCCCCccceEEHHHHHHHHHHHHhCCC
Confidence 999999889999999999999998 55577888999999999998887 688999999999999999999999987
Q ss_pred ccCCCCCCCCCCCCcceEEcC
Q 042406 319 KSTGSGGKKKGPAEFRIFNLG 339 (424)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~i~ 339 (424)
+.+++|||+
T Consensus 228 ------------~~~~~yNig 236 (236)
T PF01370_consen 228 ------------AAGGIYNIG 236 (236)
T ss_dssp ------------TTTEEEEES
T ss_pred ------------CCCCEEEeC
Confidence 233899986
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=260.24 Aligned_cols=317 Identities=23% Similarity=0.282 Sum_probs=263.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHH-HHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLK-KARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+|+.||||-||+-|.+|++.|++.|+.|.++.|.++....... ..........+++.+.+|++|...+.++++.++||.
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdE 81 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDE 81 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCchh
Confidence 5789999999999999999999999999999997665444321 112233345669999999999999999999999999
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKK 236 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~ 236 (424)
|+|+|+..++..+.+.|+.+.+++-.|+.+||++.+-.+. +.+|...||+..||.....|.+|+.|. .|.++|+.+|+
T Consensus 82 IYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPF-yPrSPYAvAKl 160 (345)
T COG1089 82 IYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVAKL 160 (345)
T ss_pred heeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCC-CCCCHHHHHHH
Confidence 9999999999999999999999999999999999998875 459999999999999888999999977 89999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHH---HHHcCCceeEEecCCCCccccccccHHHHHHHHHHH
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTR---DIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAG 313 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 313 (424)
.+.-+...+.+.+|+-.+.=..++--+|..........+.. .+..|..-.++. |+-+..|||-|+.|.++++..+
T Consensus 161 Ya~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~l--GNldAkRDWG~A~DYVe~mwlm 238 (345)
T COG1089 161 YAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYL--GNLDAKRDWGHAKDYVEAMWLM 238 (345)
T ss_pred HHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEe--ccccccccccchHHHHHHHHHH
Confidence 99999999999999876655555555665444444444433 344565555543 7889999999999999999999
Q ss_pred hhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccc----------------cc----cCCCCCC
Q 042406 314 LDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETK----------------VL----PLPRNGD 373 (424)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~----------------~~----~~~~~~~ 373 (424)
++++.+ ..|+++.|+..|++|++++..+..|.+..+. .+ ...++.+
T Consensus 239 LQq~~P--------------ddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaE 304 (345)
T COG1089 239 LQQEEP--------------DDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAE 304 (345)
T ss_pred HccCCC--------------CceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchh
Confidence 998764 6899999999999999999999999766542 11 1224556
Q ss_pred cccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 374 VQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 374 ~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
......|.+|+++.|||+|.++++|.+++++++..+...
T Consensus 305 V~~Llgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~~~ 343 (345)
T COG1089 305 VDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLEAAR 343 (345)
T ss_pred hhhhcCCHHHHHHHcCCccccCHHHHHHHHHHHHHHHhh
Confidence 666789999999999999999999999999999877543
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=268.22 Aligned_cols=278 Identities=18% Similarity=0.182 Sum_probs=211.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|+|||||||||++++++|+++|++|++++|+.+.. ......+++++.+|+.|++++.++++++ |+||
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~---------~~l~~~~v~~v~~Dl~d~~~l~~al~g~--d~Vi 69 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA---------SFLKEWGAELVYGDLSLPETLPPSFKGV--TAII 69 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh---------hhHhhcCCEEEECCCCCHHHHHHHHCCC--CEEE
Confidence 6899999999999999999999999999999964311 1112247899999999999999999976 9999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|+++.. ..++....++|+.++.+++++|++.+++ +||++||.+... .+...|..+|..+|
T Consensus 70 ~~~~~~-----~~~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~Ss~~~~~--------------~~~~~~~~~K~~~e 129 (317)
T CHL00194 70 DASTSR-----PSDLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFSILNAEQ--------------YPYIPLMKLKSDIE 129 (317)
T ss_pred ECCCCC-----CCCccchhhhhHHHHHHHHHHHHHcCCC-EEEEeccccccc--------------cCCChHHHHHHHHH
Confidence 997642 2344567889999999999999999986 999999954321 12356889999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
.+++. .+++++++||+.+|+... ..+...+..+.++.+ .+++..++|+|++|+|++++.+++.+..
T Consensus 130 ~~l~~----~~l~~tilRp~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~~~~i~v~Dva~~~~~~l~~~~~ 195 (317)
T CHL00194 130 QKLKK----SGIPYTIFRLAGFFQGLI------SQYAIPILEKQPIWI----TNESTPISYIDTQDAAKFCLKSLSLPET 195 (317)
T ss_pred HHHHH----cCCCeEEEeecHHhhhhh------hhhhhhhccCCceEe----cCCCCccCccCHHHHHHHHHHHhcCccc
Confidence 87754 489999999999886311 111222334455444 3556778999999999999999976542
Q ss_pred cCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCC----------------C----------CC
Q 042406 320 STGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR----------------N----------GD 373 (424)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~----------------~----------~~ 373 (424)
.+++||+++++.+|++|+++.+.+.+|.+..+...|... . ..
T Consensus 196 ------------~~~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 263 (317)
T CHL00194 196 ------------KNKTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNT 263 (317)
T ss_pred ------------cCcEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhc
Confidence 238999999999999999999999999876554433210 0 00
Q ss_pred cccccCChHHHHhHcCCccc--CCHHHHHHHHHHHHHHHhccC
Q 042406 374 VQFTHANISLAQRELGYMPT--TDLETGLKKFVRWYLSYYNSA 414 (424)
Q Consensus 374 ~~~~~~d~s~~~~~LG~~p~--~~l~~~l~~~v~~~~~~~~~~ 414 (424)
......+.+++++.||+.|. .++++++++++.-.++..+..
T Consensus 264 ~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 306 (317)
T CHL00194 264 SNNFSSSMAELYKIFKIDPNELISLEDYFQEYFERILKRLKDI 306 (317)
T ss_pred CCCcCCCHHHHHHHhCCChhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 11233567788999999984 589999999998887765543
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=257.39 Aligned_cols=272 Identities=16% Similarity=0.223 Sum_probs=205.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
..|+||||||+||||++|++.|+++|++|+... .|+.|.+.+...++..+||+
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~---------------------------~~~~~~~~v~~~l~~~~~D~ 60 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS---------------------------GRLENRASLEADIDAVKPTH 60 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEec---------------------------CccCCHHHHHHHHHhcCCCE
Confidence 347899999999999999999999999987542 25667777888888778899
Q ss_pred EEEcccccCc---hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC------CCCCCCCCCCCCCC
Q 042406 158 VMHLAAQAGV---RYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNK------KVPFSEKDRTDQPA 228 (424)
Q Consensus 158 vi~~Ag~~~~---~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~------~~~~~e~~~~~~~~ 228 (424)
|||+||..+. .++..++...+++|+.|+.+++++|++.++ +++++||.++|+... ..++.|++++..+.
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv--~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~ 138 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGL--VLTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTG 138 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--CEEEEecceEeCCCCCCCcccCCCCCcCCCCCCCC
Confidence 9999998653 235567889999999999999999999987 467778888887532 22477777665566
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHH
Q 042406 229 SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVK 308 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 308 (424)
+.|+.||+++|.++..+.+ ..++|++.++|++.. ....++..++.+.++... + .+|+|++|+++
T Consensus 139 s~Yg~sK~~~E~~~~~y~~-----~~~lr~~~~~~~~~~---~~~~fi~~~~~~~~~~~~---~-----~s~~yv~D~v~ 202 (298)
T PLN02778 139 SFYSKTKAMVEELLKNYEN-----VCTLRVRMPISSDLS---NPRNFITKITRYEKVVNI---P-----NSMTILDELLP 202 (298)
T ss_pred CchHHHHHHHHHHHHHhhc-----cEEeeecccCCcccc---cHHHHHHHHHcCCCeeEc---C-----CCCEEHHHHHH
Confidence 8999999999999988753 467888888886422 123467888888776543 1 27999999999
Q ss_pred HHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCC-----CCcccccCChHH
Q 042406 309 GCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN-----GDVQFTHANISL 383 (424)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~-----~~~~~~~~d~s~ 383 (424)
+++.+++... +++||+++++.+|+.|+++++.+.++.+..+..+..+.. .......+|++|
T Consensus 203 al~~~l~~~~--------------~g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k 268 (298)
T PLN02778 203 ISIEMAKRNL--------------TGIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTK 268 (298)
T ss_pred HHHHHHhCCC--------------CCeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHH
Confidence 9999986432 159999999999999999999999996533211111101 011123699999
Q ss_pred HHhHcCCcccCCHHHHHHHHHHHHHH
Q 042406 384 AQRELGYMPTTDLETGLKKFVRWYLS 409 (424)
Q Consensus 384 ~~~~LG~~p~~~l~~~l~~~v~~~~~ 409 (424)
+++.++-.+. ..+++++..++-++.
T Consensus 269 ~~~~~~~~~~-~~~~~~~~~~~~~~~ 293 (298)
T PLN02778 269 LKREFPELLP-IKESLIKYVFEPNKK 293 (298)
T ss_pred HHHhcccccc-hHHHHHHHHHHHHHh
Confidence 9998876554 567777777776643
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=227.82 Aligned_cols=294 Identities=20% Similarity=0.244 Sum_probs=239.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD---GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
+|+|+||||+|.+|++|.+.+.+.|. +.+.... -.+|+++.++++++|+..+|
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s------------------------kd~DLt~~a~t~~lF~~ekP 56 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS------------------------KDADLTNLADTRALFESEKP 56 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc------------------------ccccccchHHHHHHHhccCC
Confidence 47899999999999999999999875 2222221 14799999999999999999
Q ss_pred cEEEEcccccCchh-hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC----CCCCCCCh
Q 042406 156 THVMHLAAQAGVRY-AMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKD----RTDQPASL 230 (424)
Q Consensus 156 d~vi~~Ag~~~~~~-~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~----~~~~~~~~ 230 (424)
.+|||+|+.++.-. ....+.+.++.|+.--.|++..|-+.|++ +++++-|.++|-.....|++|.- ++.+..-.
T Consensus 57 thVIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~-K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~g 135 (315)
T KOG1431|consen 57 THVIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVK-KVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFG 135 (315)
T ss_pred ceeeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchh-hhhhhcceeecCCCCCCCCCHHHhccCCCCCCchH
Confidence 99999999876532 34456789999999999999999999997 89999999999988888888853 44444567
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----CcHHHHHHHHH----cCC-ceeEEecCCCCccccccc
Q 042406 231 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD----MAYFFFTRDII----RGK-RITVYEAPDGASVARDFT 301 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~i 301 (424)
|+.+|.++.-..+.+..++|-.++.+-|.++|||.+..+ ..++.++..+- .|. .+.+| |.+...|.|+
T Consensus 136 YsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~Vw---GsG~PlRqFi 212 (315)
T KOG1431|consen 136 YSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVW---GSGSPLRQFI 212 (315)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEe---cCCChHHHHh
Confidence 999998888777999999999999999999999987543 34555554433 333 67787 8999999999
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC--cccHHHHHHHHHHHhCcccccccccCCCCCCcccccC
Q 042406 302 YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT--PVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHA 379 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (424)
|++|+|++++.++++-... +..+++.|+ .+|++|+++++.+.++...+..+-..- +.......+
T Consensus 213 ys~DLA~l~i~vlr~Y~~v-------------Epiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~DttK-~DGq~kKta 278 (315)
T KOG1431|consen 213 YSDDLADLFIWVLREYEGV-------------EPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTTK-SDGQFKKTA 278 (315)
T ss_pred hHhHHHHHHHHHHHhhcCc-------------cceEeccCccceeEHHHHHHHHHHHhCCCceEEeeccC-CCCCccccc
Confidence 9999999999999886543 457777776 799999999999999988877765432 334445678
Q ss_pred ChHHHHhHcCCcccCC-HHHHHHHHHHHHHHHhccCC
Q 042406 380 NISLAQRELGYMPTTD-LETGLKKFVRWYLSYYNSAS 415 (424)
Q Consensus 380 d~s~~~~~LG~~p~~~-l~~~l~~~v~~~~~~~~~~~ 415 (424)
|++|+++ |+|.|+.+ |+++|.++++||.+.+...+
T Consensus 279 snsKL~s-l~pd~~ft~l~~ai~~t~~Wy~~Ny~qar 314 (315)
T KOG1431|consen 279 SNSKLRS-LLPDFKFTPLEQAISETVQWYLDNYEQAR 314 (315)
T ss_pred chHHHHH-hCCCcccChHHHHHHHHHHHHHHhHHhhc
Confidence 9999976 89999976 99999999999999887543
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=278.89 Aligned_cols=256 Identities=19% Similarity=0.219 Sum_probs=195.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|+||||+||||++++++|+++|++|++++|+... . ...++.++.+|++|.+++.++++++ |+||
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~--------~----~~~~v~~v~gDL~D~~~l~~al~~v--D~VV 66 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPD--------S----WPSSADFIAADIRDATAVESAMTGA--DVVA 66 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchh--------h----cccCceEEEeeCCCHHHHHHHHhCC--CEEE
Confidence 579999999999999999999999999999985321 0 0135789999999999999999865 9999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|||+.... .+++|+.++.+++++|++.+++ +||++||.+ |.++|
T Consensus 67 HlAa~~~~---------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~--------------------------K~aaE 110 (854)
T PRK05865 67 HCAWVRGR---------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH--------------------------QPRVE 110 (854)
T ss_pred ECCCcccc---------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH--------------------------HHHHH
Confidence 99986321 4689999999999999999875 999999842 88888
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
.++.+ ++++++++||++||||+.. .++..+.. ..++. .+..+..++|+|++|+|++++.+++....
T Consensus 111 ~ll~~----~gl~~vILRp~~VYGP~~~------~~i~~ll~---~~v~~-~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~ 176 (854)
T PRK05865 111 QMLAD----CGLEWVAVRCALIFGRNVD------NWVQRLFA---LPVLP-AGYADRVVQVVHSDDAQRLLVRALLDTVI 176 (854)
T ss_pred HHHHH----cCCCEEEEEeceEeCCChH------HHHHHHhc---Cceec-cCCCCceEeeeeHHHHHHHHHHHHhCCCc
Confidence 87743 5999999999999999632 23333332 22221 14456677999999999999998865421
Q ss_pred cCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhC---cccccccccCC-CCCCcccccCChHHHHhHcCCcccCC
Q 042406 320 STGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILK---VKAETKVLPLP-RNGDVQFTHANISLAQRELGYMPTTD 395 (424)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g---~~~~~~~~~~~-~~~~~~~~~~d~s~~~~~LG~~p~~~ 395 (424)
.+++||+++++.+|+.|+++.+.+... .+......+.. .........+|++|+++.|||+|+++
T Consensus 177 ------------~ggvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~s 244 (854)
T PRK05865 177 ------------DSGPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWN 244 (854)
T ss_pred ------------CCCeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCC
Confidence 126899999999999999999987532 11111000000 00111234689999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 042406 396 LETGLKKFVRWYLSYY 411 (424)
Q Consensus 396 l~~~l~~~v~~~~~~~ 411 (424)
++++|+++++||+...
T Consensus 245 LeeGL~dti~~~r~ri 260 (854)
T PRK05865 245 AEECLEDFTLAVRGRI 260 (854)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999998753
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=250.40 Aligned_cols=280 Identities=16% Similarity=0.129 Sum_probs=196.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhh-ccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLL-ERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.++|+|+||||+||||++++++|+++|++|+++.|+.+.... ........ ...+++++.+|++|.+++.+++.++
T Consensus 4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~--~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~-- 79 (297)
T PLN02583 4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEI--EKEIRGLSCEEERLKVFDVDPLDYHSILDALKGC-- 79 (297)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhH--HHHHHhcccCCCceEEEEecCCCHHHHHHHHcCC--
Confidence 456889999999999999999999999999999985432111 00111110 1246889999999999999999876
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCcccCCC-----CCCCCCCCCCCC----
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS-DPQPAIVWASSSSVYGVN-----KKVPFSEKDRTD---- 225 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~~v~~SS~~vyg~~-----~~~~~~e~~~~~---- 225 (424)
|.|+|.++..... ..+.+..+++|+.|+.+++++|.+. ++ ++||++||.+.++.. ...+++|+++..
T Consensus 80 d~v~~~~~~~~~~--~~~~~~~~~~nv~gt~~ll~aa~~~~~v-~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~ 156 (297)
T PLN02583 80 SGLFCCFDPPSDY--PSYDEKMVDVEVRAAHNVLEACAQTDTI-EKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFC 156 (297)
T ss_pred CEEEEeCccCCcc--cccHHHHHHHHHHHHHHHHHHHHhcCCc-cEEEEecchHheecccccCCCCCCCCcccCCCHHHH
Confidence 9999987653211 1235689999999999999999886 45 499999998765321 123566655421
Q ss_pred -CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHH
Q 042406 226 -QPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYID 304 (424)
Q Consensus 226 -~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 304 (424)
.+...|+.||..+|++++++.+..|+++++|||++||||+..... ..+.+.. ..+ ++..++||||+
T Consensus 157 ~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~-------~~~~~~~-~~~-----~~~~~~~v~V~ 223 (297)
T PLN02583 157 RKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN-------PYLKGAA-QMY-----ENGVLVTVDVN 223 (297)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch-------hhhcCCc-ccC-----cccCcceEEHH
Confidence 112379999999999999998878999999999999999764321 1222221 221 12356799999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHH
Q 042406 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLA 384 (424)
Q Consensus 305 Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~ 384 (424)
|+|++++.+++.+.. . +.|+++++......++.+++.+.++.-........ ...+.....+++.|+
T Consensus 224 Dva~a~~~al~~~~~------------~-~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~k~ 289 (297)
T PLN02583 224 FLVDAHIRAFEDVSS------------Y-GRYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYEM-QGSEVYQQRIRNKKL 289 (297)
T ss_pred HHHHHHHHHhcCccc------------C-CcEEEecCCCccHHHHHHHHHHhCCCCCCCCcccc-cCCCccccccChHHH
Confidence 999999999986532 1 46888876655568899999999874311110010 011223356788888
Q ss_pred HhHcCCc
Q 042406 385 QRELGYM 391 (424)
Q Consensus 385 ~~~LG~~ 391 (424)
++ ||++
T Consensus 290 ~~-l~~~ 295 (297)
T PLN02583 290 NK-LMED 295 (297)
T ss_pred HH-hCcc
Confidence 55 8876
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=245.92 Aligned_cols=242 Identities=27% Similarity=0.347 Sum_probs=187.2
Q ss_pred EEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeE----EEEccCCCHHHHHHHhhccCcc
Q 042406 82 VLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVF----VIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~----~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
||||||+|.||+.|+++|++.+ .++++++|++...-....+.+.. ....++. .+.+|++|.+.+.++|+..+||
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~-~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSR-FPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHH-C--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhc-ccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 7999999999999999999998 57999999766544433332211 1223443 4689999999999999988999
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKK 236 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~ 236 (424)
+|||.|+.-+++..+..|.+++.+|+.||.|++++|.++++. +||++||.-.. +|.+.||+||.
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~-~~v~ISTDKAv---------------~PtnvmGatKr 143 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVE-RFVFISTDKAV---------------NPTNVMGATKR 143 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-S-EEEEEEECGCS---------------S--SHHHHHHH
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEccccccC---------------CCCcHHHHHHH
Confidence 999999999999999999999999999999999999999987 99999995442 68899999999
Q ss_pred HHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHH
Q 042406 237 AGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAG 313 (424)
Q Consensus 237 ~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 313 (424)
.+|.++..++... +.++++||+|+|.|..++ .++.|.+++.+|+|+++ .+++.+|-|+.++++++.++.+
T Consensus 144 laE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GS---Vip~F~~Qi~~g~PlTv----T~p~mtRffmti~EAv~Lvl~a 216 (293)
T PF02719_consen 144 LAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGS---VIPLFKKQIKNGGPLTV----TDPDMTRFFMTIEEAVQLVLQA 216 (293)
T ss_dssp HHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTS---CHHHHHHHHHTTSSEEE----CETT-EEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhCCCCCcEEEEEEecceecCCCc---HHHHHHHHHHcCCccee----CCCCcEEEEecHHHHHHHHHHH
Confidence 9999999998765 689999999999987544 68999999999999999 5789999999999999999998
Q ss_pred hhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcc
Q 042406 314 LDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK 360 (424)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~ 360 (424)
...... |++|.+--|+++++.|+++.+-+..|..
T Consensus 217 ~~~~~~-------------geifvl~mg~~v~I~dlA~~~i~~~g~~ 250 (293)
T PF02719_consen 217 AALAKG-------------GEIFVLDMGEPVKILDLAEAMIELSGLE 250 (293)
T ss_dssp HHH--T-------------TEEEEE---TCEECCCHHHHHHHHTT-E
T ss_pred HhhCCC-------------CcEEEecCCCCcCHHHHHHHHHhhcccc
Confidence 876542 2799998899999999999999999853
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=250.92 Aligned_cols=246 Identities=24% Similarity=0.278 Sum_probs=216.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..+||+||||||+|.||+.+++++++.+. ++++++|++........+.+.. ....++.++-+|+.|.+.+.+++++.+
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~-~~~~~~~~~igdVrD~~~~~~~~~~~k 325 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREK-FPELKLRFYIGDVRDRDRVERAMEGHK 325 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhh-CCCcceEEEecccccHHHHHHHHhcCC
Confidence 46899999999999999999999999985 7888899776554443333322 124788999999999999999999989
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
||+|||.|+.-+++..+.+|.+.+.+|+.||.|++++|.+++++ +||.+||.-. -+|.+.||+|
T Consensus 326 vd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~-~~V~iSTDKA---------------V~PtNvmGaT 389 (588)
T COG1086 326 VDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVK-KFVLISTDKA---------------VNPTNVMGAT 389 (588)
T ss_pred CceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCC-EEEEEecCcc---------------cCCchHhhHH
Confidence 99999999999999999999999999999999999999999997 9999999433 2788999999
Q ss_pred HHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHH
Q 042406 235 KKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311 (424)
Q Consensus 235 K~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 311 (424)
|..+|.++..+++.. +.+++++|.|+|.|..++ .++.|.+++.+|+++++ .+++.+|-|..+.|.++.++
T Consensus 390 Kr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrGS---ViPlFk~QI~~GgplTv----Tdp~mtRyfMTI~EAv~LVl 462 (588)
T COG1086 390 KRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRGS---VIPLFKKQIAEGGPLTV----TDPDMTRFFMTIPEAVQLVL 462 (588)
T ss_pred HHHHHHHHHHHhhccCCCCcEEEEEEecceecCCCC---CHHHHHHHHHcCCCccc----cCCCceeEEEEHHHHHHHHH
Confidence 999999999998743 389999999999997554 68899999999999999 58999999999999999999
Q ss_pred HHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhC
Q 042406 312 AGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358 (424)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g 358 (424)
.+..... +|.+|.+.-|+++++.|+++.+-+++|
T Consensus 463 qA~a~~~-------------gGeifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 463 QAGAIAK-------------GGEIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred HHHhhcC-------------CCcEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 8887643 238999998999999999999999998
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-31 Score=248.90 Aligned_cols=279 Identities=20% Similarity=0.184 Sum_probs=195.5
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEEc
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHL 161 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~~ 161 (424)
||||||+||||+++++.|+++|++|++++|+........ ... ..|+.. +.+.+.+.+ +|+|||+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~----~~~~~~-~~~~~~~~~--~D~Vvh~ 64 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK---------WEG----YKPWAP-LAESEALEG--ADAVINL 64 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc---------cee----eecccc-cchhhhcCC--CCEEEEC
Confidence 699999999999999999999999999999765321100 001 112222 344455554 4999999
Q ss_pred ccccCch--hhccChHHHHHHHHHHHHHHHHHHHhcCCC-CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 162 AAQAGVR--YAMQNPNSYVESNIAGFVNLLETCKSSDPQ-PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 162 Ag~~~~~--~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
||..... +....++..+++|+.++.+++++|++.+.+ .+||++||.++||.....++.|++++ .+.+.|+..+...
T Consensus 65 a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~-~~~~~~~~~~~~~ 143 (292)
T TIGR01777 65 AGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDSP-AGDDFLAELCRDW 143 (292)
T ss_pred CCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccCC-CCCChHHHHHHHH
Confidence 9974321 122234568899999999999999999863 36777788889997666677777644 4556677777777
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
|.....+. +.+++++++||+.||||+.. ....+...+....... + ++++..++|+|++|+|+++..+++++.
T Consensus 144 e~~~~~~~-~~~~~~~ilR~~~v~G~~~~---~~~~~~~~~~~~~~~~-~---g~~~~~~~~i~v~Dva~~i~~~l~~~~ 215 (292)
T TIGR01777 144 EEAAQAAE-DLGTRVVLLRTGIVLGPKGG---ALAKMLPPFRLGLGGP-L---GSGRQWFSWIHIEDLVQLILFALENAS 215 (292)
T ss_pred HHHhhhch-hcCCceEEEeeeeEECCCcc---hhHHHHHHHhcCcccc-c---CCCCcccccEeHHHHHHHHHHHhcCcc
Confidence 77665443 35899999999999999642 2233332222221111 2 577899999999999999999997643
Q ss_pred ccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCC--------CCC-cccccCChHHHHhHcC
Q 042406 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR--------NGD-VQFTHANISLAQRELG 389 (424)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~--------~~~-~~~~~~d~s~~~~~LG 389 (424)
. .++||+++++++|+.|+++.+.+.+|.+.... .|... ... ......++++++. +|
T Consensus 216 ~-------------~g~~~~~~~~~~s~~di~~~i~~~~g~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g 280 (292)
T TIGR01777 216 I-------------SGPVNATAPEPVRNKEFAKALARALHRPAFFP-VPAFVLRALLGEMADLLLKGQRVLPEKLLE-AG 280 (292)
T ss_pred c-------------CCceEecCCCccCHHHHHHHHHHHhCCCCcCc-CCHHHHHHHhchhhHHHhCCcccccHHHHh-cC
Confidence 2 15899999999999999999999999764322 22110 000 1234467888864 99
Q ss_pred CcccC-CHHHHH
Q 042406 390 YMPTT-DLETGL 400 (424)
Q Consensus 390 ~~p~~-~l~~~l 400 (424)
|+|++ +++|++
T Consensus 281 ~~~~~~~~~~~~ 292 (292)
T TIGR01777 281 FQFQYPDLDEAL 292 (292)
T ss_pred CeeeCcChhhcC
Confidence 99998 588764
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=259.88 Aligned_cols=266 Identities=18% Similarity=0.215 Sum_probs=195.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEeCCCCchhhhHH---HHHhh---------------hhccCCeEE
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD---GVLGLDNFNNYYETSLK---KARKG---------------LLERAGVFV 135 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~---~~~~~---------------~~~~~~v~~ 135 (424)
.++|+|+|||||||||++|+++|++.+. +|+++.|..+....... ..... .....++++
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~ 88 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP 88 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence 4789999999999999999999998753 68999997653322111 10000 001268999
Q ss_pred EEccCC-------CHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 042406 136 IDADIN-------DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSS 208 (424)
Q Consensus 136 ~~~Dl~-------d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~ 208 (424)
+.+|++ |.+.++++++++ |+|||+|+.... ..+++..+.+|+.|+.+++++|++.+..++||++||++
T Consensus 89 i~GDl~~~~LGLs~~~~~~~l~~~v--D~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~ 163 (491)
T PLN02996 89 VPGDISYDDLGVKDSNLREEMWKEI--DIVVNLAATTNF---DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAY 163 (491)
T ss_pred EecccCCcCCCCChHHHHHHHHhCC--CEEEECccccCC---cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeE
Confidence 999998 555677788765 999999998653 24678899999999999999999863234999999999
Q ss_pred ccCCCCC----CCCCCCC--------------------------------------------C--CCCCCChHHHHHHHH
Q 042406 209 VYGVNKK----VPFSEKD--------------------------------------------R--TDQPASLYAATKKAG 238 (424)
Q Consensus 209 vyg~~~~----~~~~e~~--------------------------------------------~--~~~~~~~Y~~sK~~~ 238 (424)
+||...+ .++.+.. + .....+.|+.||+++
T Consensus 164 vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~a 243 (491)
T PLN02996 164 VCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAMG 243 (491)
T ss_pred EecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHHH
Confidence 9986431 1222110 0 012346799999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCC-Cc------HHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHH
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYGPWGRPD-MA------YFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 311 (424)
|.++..+.. +++++++||++||||+..+. .+ ...++..+..|....++ +++++.+|++||+|+|.+++
T Consensus 244 E~lv~~~~~--~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~---gdg~~~~D~v~Vddvv~a~l 318 (491)
T PLN02996 244 EMLLGNFKE--NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFL---ADPNSVLDVIPADMVVNAMI 318 (491)
T ss_pred HHHHHHhcC--CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEe---cCCCeecceecccHHHHHHH
Confidence 999988754 89999999999999976542 11 12344444555555555 78899999999999999999
Q ss_pred HHhhhccccCCCCCCCCCCCCcceEEcCCC--CcccHHHHHHHHHHHhCccc
Q 042406 312 AGLDTAKKSTGSGGKKKGPAEFRIFNLGNT--TPVPVSRLVSLLEKILKVKA 361 (424)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~el~~~i~~~~g~~~ 361 (424)
.++....... ..+++||++++ .++|+.|+++.+.+.++..+
T Consensus 319 ~a~~~~~~~~---------~~~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p 361 (491)
T PLN02996 319 VAMAAHAGGQ---------GSEIIYHVGSSLKNPVKFSNLHDFAYRYFSKNP 361 (491)
T ss_pred HHHHHhhccC---------CCCcEEEecCCCCCcccHHHHHHHHHHHhhhCC
Confidence 9987632110 12379999998 88999999999999887543
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=268.63 Aligned_cols=303 Identities=17% Similarity=0.186 Sum_probs=214.9
Q ss_pred CeEEEEcCCChhHHHHHHHHH--hCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCH------HHHHHHhh
Q 042406 80 LTVLVTGAAGFVGSHVSLALK--KRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDK------SLLDKIFN 151 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~--~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~------~~v~~~~~ 151 (424)
|+|||||||||||++|+++|+ ++|++|++++|+.... ...... ......+++++.+|++|+ +.++++ +
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~--~~~~~~-~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~ 76 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLS--RLEALA-AYWGADRVVPLVGDLTEPGLGLSEADIAEL-G 76 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHH--HHHHHH-HhcCCCcEEEEecccCCccCCcCHHHHHHh-c
Confidence 589999999999999999999 5899999999954321 111111 111225789999999984 455555 5
Q ss_pred ccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC--CCCCC
Q 042406 152 VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT--DQPAS 229 (424)
Q Consensus 152 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~--~~~~~ 229 (424)
++|+||||||..... ...+....+|+.|+.+++++|++.+.+ +|||+||.++||.... +++|++.. ..+.+
T Consensus 77 --~~D~Vih~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~~SS~~v~g~~~~-~~~e~~~~~~~~~~~ 149 (657)
T PRK07201 77 --DIDHVVHLAAIYDLT---ADEEAQRAANVDGTRNVVELAERLQAA-TFHHVSSIAVAGDYEG-VFREDDFDEGQGLPT 149 (657)
T ss_pred --CCCEEEECceeecCC---CCHHHHHHHHhHHHHHHHHHHHhcCCC-eEEEEeccccccCccC-ccccccchhhcCCCC
Confidence 459999999975432 345678899999999999999998875 9999999999986432 34444321 23457
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-------cHHHHHHHHHcC-CceeEEecCCCCccccccc
Q 042406 230 LYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDM-------AYFFFTRDIIRG-KRITVYEAPDGASVARDFT 301 (424)
Q Consensus 230 ~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i 301 (424)
.|+.+|+++|.++.+. .+++++++||++||||...... .+..++..+... ....++ +.+...++++
T Consensus 150 ~Y~~sK~~~E~~~~~~---~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v 223 (657)
T PRK07201 150 PYHRTKFEAEKLVREE---CGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMV---GPDGGRTNIV 223 (657)
T ss_pred chHHHHHHHHHHHHHc---CCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccc---cCCCCeeeee
Confidence 8999999999998752 4899999999999998643211 111122222111 112222 3455678999
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccc---ccccccCCC--------
Q 042406 302 YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKA---ETKVLPLPR-------- 370 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~---~~~~~~~~~-------- 370 (424)
|++|+++++..+++.+. ..+++||+++++++++.|+++.+.+.+|.+. .....|...
T Consensus 224 ~vddva~ai~~~~~~~~------------~~g~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~ 291 (657)
T PRK07201 224 PVDYVADALDHLMHKDG------------RDGQTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAAL 291 (657)
T ss_pred eHHHHHHHHHHHhcCcC------------CCCCEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhc
Confidence 99999999998887433 2337999999999999999999999999876 332222110
Q ss_pred -------------CC--------CcccccCChHHHHhHc---CCcccCCHHHHHHHHHHHHHHHhc
Q 042406 371 -------------NG--------DVQFTHANISLAQREL---GYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 371 -------------~~--------~~~~~~~d~s~~~~~L---G~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
.+ -.....+|++++++.| |+... .+++.+.+.++|+.++..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~~ 356 (657)
T PRK07201 292 GPVRRLRNAVATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHLD 356 (657)
T ss_pred chhhHHHHHHHHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcCC
Confidence 00 0112467899999988 55444 688999999998888754
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-30 Score=249.89 Aligned_cols=248 Identities=17% Similarity=0.137 Sum_probs=192.4
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
....++|+|+||||+|+||++++++|+++|++|++++|+.+........... .....+++++.+|++|.+++.+++++.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~-~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 133 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDT-KKELPGAEVVFGDVTDADSLRKVLFSE 133 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHH-hhhcCCceEEEeeCCCHHHHHHHHHHh
Confidence 3456789999999999999999999999999999999976432211000000 012357899999999999999999864
Q ss_pred --CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChH
Q 042406 154 --AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLY 231 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y 231 (424)
++|+||||++.... .....+++|+.++.+++++|++.+++ +||++||.++++ |...|
T Consensus 134 ~~~~D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iSS~~v~~---------------p~~~~ 192 (390)
T PLN02657 134 GDPVDVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAK-HFVLLSAICVQK---------------PLLEF 192 (390)
T ss_pred CCCCcEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCC-EEEEEeeccccC---------------cchHH
Confidence 47999999885321 12345788999999999999999876 999999987753 34568
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc-ccccHHHHHHHH
Q 042406 232 AATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR-DFTYIDDIVKGC 310 (424)
Q Consensus 232 ~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~Dva~a~ 310 (424)
..+|...|..+.. ...++++++|||+.+||+. ..++..+..++++.++ ++++..+ ++||++|+|+++
T Consensus 193 ~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~-------~~~~~~~~~g~~~~~~---GdG~~~~~~~I~v~DlA~~i 260 (390)
T PLN02657 193 QRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL-------GGQVEIVKDGGPYVMF---GDGKLCACKPISEADLASFI 260 (390)
T ss_pred HHHHHHHHHHHHh--ccCCCCEEEEccHHHhccc-------HHHHHhhccCCceEEe---cCCcccccCceeHHHHHHHH
Confidence 8999999988765 3458999999999999752 1245566778877766 5666544 689999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCcceEEcCCC-CcccHHHHHHHHHHHhCccccccccc
Q 042406 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT-TPVPVSRLVSLLEKILKVKAETKVLP 367 (424)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~s~~el~~~i~~~~g~~~~~~~~~ 367 (424)
+.++.++. ..+++||++++ +.+|+.|+++++.+.+|.+.++...|
T Consensus 261 ~~~~~~~~------------~~~~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp 306 (390)
T PLN02657 261 ADCVLDES------------KINKVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVP 306 (390)
T ss_pred HHHHhCcc------------ccCCEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcC
Confidence 99987543 22389999985 68999999999999999877665544
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=231.34 Aligned_cols=259 Identities=21% Similarity=0.261 Sum_probs=185.6
Q ss_pred eEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhh--HHH-HHhhhh-----ccCCeEEEEccCCCH------H
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETS--LKK-ARKGLL-----ERAGVFVIDADINDK------S 144 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~--~~~-~~~~~~-----~~~~v~~~~~Dl~d~------~ 144 (424)
+|+|||||||||++|+++|+++| ++|+++.|+.+..... ... ...... ...+++++.+|++++ +
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 48999999999999999999999 6799999976532111 000 000000 015799999999854 4
Q ss_pred HHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 145 LLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 145 ~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
...++.+++ |+|||||+.... ....+...++|+.|+.+++++|.+.+.+ +|+++||.++|+.....+..++++.
T Consensus 81 ~~~~~~~~~--d~vih~a~~~~~---~~~~~~~~~~nv~g~~~ll~~a~~~~~~-~~v~iSS~~v~~~~~~~~~~~~~~~ 154 (367)
T TIGR01746 81 EWERLAENV--DTIVHNGALVNW---VYPYSELRAANVLGTREVLRLAASGRAK-PLHYVSTISVLAAIDLSTVTEDDAI 154 (367)
T ss_pred HHHHHHhhC--CEEEeCCcEecc---CCcHHHHhhhhhHHHHHHHHHHhhCCCc-eEEEEccccccCCcCCCCccccccc
Confidence 566666655 999999997542 2345677889999999999999998875 7999999999986443333333321
Q ss_pred ----CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 225 ----DQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP----DMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 225 ----~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
..+.+.|+.+|+++|.+++.+.+. |++++++|||.|||+.... ...+..++........ ++ .....
T Consensus 155 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~---~p--~~~~~ 228 (367)
T TIGR01746 155 VTPPPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGA---YP--DSPEL 228 (367)
T ss_pred cccccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCC---CC--CCCcc
Confidence 123468999999999999887665 9999999999999974322 1122333333333222 21 12234
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE 362 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~ 362 (424)
..+++|++|++++++.++...... ..+++||+++++++++.|+++.+.+ +|.+.+
T Consensus 229 ~~~~~~vddva~ai~~~~~~~~~~----------~~~~~~~v~~~~~~s~~e~~~~i~~-~g~~~~ 283 (367)
T TIGR01746 229 TEDLTPVDYVARAIVALSSQPAAS----------AGGPVFHVVNPEPVSLDEFLEWLER-AGYNLK 283 (367)
T ss_pred ccCcccHHHHHHHHHHHHhCCCcc----------cCCceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence 678999999999999988765421 0137999999999999999999999 786654
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=249.08 Aligned_cols=267 Identities=17% Similarity=0.234 Sum_probs=198.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
..|+||||||+||||++|++.|.++|++|... .+|++|.+.+.+.++..+||+
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~---------------------------~~~l~d~~~v~~~i~~~~pd~ 431 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG---------------------------KGRLEDRSSLLADIRNVKPTH 431 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEee---------------------------ccccccHHHHHHHHHhhCCCE
Confidence 55899999999999999999999999887421 136889999999999889999
Q ss_pred EEEcccccC---chhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCC------CCCCCCCCCCCCCCC
Q 042406 158 VMHLAAQAG---VRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVN------KKVPFSEKDRTDQPA 228 (424)
Q Consensus 158 vi~~Ag~~~---~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~------~~~~~~e~~~~~~~~ 228 (424)
|||+|+..+ .+.++.+++..+++|+.|+.+|+++|++.++ ++|++||.++|+.. ...++.|++++..+.
T Consensus 432 Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~--~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~ 509 (668)
T PLN02260 432 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL--LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTG 509 (668)
T ss_pred EEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC--eEEEEcccceecCCcccccccCCCCCcCCCCCCCC
Confidence 999999864 3456778899999999999999999999987 57888999998742 134788887664556
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHH
Q 042406 229 SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVK 308 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 308 (424)
+.|+.||+++|.++..+. +..++|+.++||.+... ...|+..++........ ..+..+++|++.
T Consensus 510 ~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~---~~nfv~~~~~~~~~~~v--------p~~~~~~~~~~~ 573 (668)
T PLN02260 510 SFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSN---PRNFITKISRYNKVVNI--------PNSMTVLDELLP 573 (668)
T ss_pred ChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCC---ccHHHHHHhccceeecc--------CCCceehhhHHH
Confidence 899999999999998874 34678888888643211 11455566655442211 124677888998
Q ss_pred HHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccc---cCC--CCCCcccccCChHH
Q 042406 309 GCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVL---PLP--RNGDVQFTHANISL 383 (424)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~---~~~--~~~~~~~~~~d~s~ 383 (424)
+++.+++... +++||+++++.+|+.|+++.+.+.++....+..+ ..+ .....+...+|++|
T Consensus 574 ~~~~l~~~~~--------------~giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~~l~~~k 639 (668)
T PLN02260 574 ISIEMAKRNL--------------RGIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNNEMDASK 639 (668)
T ss_pred HHHHHHHhCC--------------CceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccccccHHH
Confidence 8888876421 1699999999999999999999988522111111 111 11111222799999
Q ss_pred HHhHcCCcccCCHHHHHHHHHH
Q 042406 384 AQRELGYMPTTDLETGLKKFVR 405 (424)
Q Consensus 384 ~~~~LG~~p~~~l~~~l~~~v~ 405 (424)
++..+|. +. +++|+|.+++.
T Consensus 640 ~~~~~~~-~~-~~~~~l~~~~~ 659 (668)
T PLN02260 640 LKKEFPE-LL-SIKESLIKYVF 659 (668)
T ss_pred HHHhCcc-cc-chHHHHHHHHh
Confidence 9998998 55 89999988764
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=205.26 Aligned_cols=317 Identities=22% Similarity=0.231 Sum_probs=250.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhh---hhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKG---LLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..|..||||-+|.=|++|++.|+.+|++|.++.|.++.....+....-. .........+.+|++|...+.+++..++
T Consensus 27 ~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik 106 (376)
T KOG1372|consen 27 PRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK 106 (376)
T ss_pred cceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence 3467999999999999999999999999999999888776655443221 1123567889999999999999999999
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCC--eEEEecCCcccCCCCCCCCCCCCCCCCCCChHH
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP--AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYA 232 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~--~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~ 232 (424)
|+-|+|+|+..++..+.+-++.+-++...|+..|+++.+.++... +|...||+..||...+.|..|..|. .|.++|+
T Consensus 107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPF-yPRSPYa 185 (376)
T KOG1372|consen 107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPF-YPRSPYA 185 (376)
T ss_pred chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCC-CCCChhH
Confidence 999999999999988888889999999999999999998776432 8999999999998888899998876 8899999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccC---CCCCCCCcHHHHHHHHH---cCCceeEEecCCCCccccccccHHHH
Q 042406 233 ATKKAGEAIAHAYNHIYGLSITGLRFFTVYG---PWGRPDMAYFFFTRDII---RGKRITVYEAPDGASVARDFTYIDDI 306 (424)
Q Consensus 233 ~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~v~Dv 306 (424)
++|..+--++..+.+.+++- .+-|.+|. |....+.....+.+.+. -|+.-.+. .|+.+..+||-|..|.
T Consensus 186 ~aKmy~~WivvNyREAYnmf---AcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~--LGNL~a~RDWGhA~dY 260 (376)
T KOG1372|consen 186 AAKMYGYWIVVNYREAYNMF---ACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIE--LGNLSALRDWGHAGDY 260 (376)
T ss_pred HhhhhheEEEEEhHHhhcce---eeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEE--ecchhhhcccchhHHH
Confidence 99999988888888877753 44455554 43332333333333332 23332222 1788999999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccccccc-------------------
Q 042406 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP------------------- 367 (424)
Q Consensus 307 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~------------------- 367 (424)
++|++.+++++.+ ..|.|..|+..|++|+++......|....+.-..
T Consensus 261 VEAMW~mLQ~d~P--------------dDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~k 326 (376)
T KOG1372|consen 261 VEAMWLMLQQDSP--------------DDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPK 326 (376)
T ss_pred HHHHHHHHhcCCC--------------CceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEeccc
Confidence 9999999998875 5799999999999999999999999655443110
Q ss_pred CCCCCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhccC
Q 042406 368 LPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSA 414 (424)
Q Consensus 368 ~~~~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~~ 414 (424)
--++.+......|.+|+++.|||+|+.++++-+++++..-.+.++.+
T Consensus 327 YyRPtEVd~LqGdasKAk~~LgW~pkv~f~eLVkeMv~~DieLm~~n 373 (376)
T KOG1372|consen 327 YYRPTEVDTLQGDASKAKKTLGWKPKVTFPELVKEMVASDIELMKRN 373 (376)
T ss_pred ccCcchhhhhcCChHHHHHhhCCCCccCHHHHHHHHHHhHHHHHhhC
Confidence 11334455567899999999999999999999999998766655543
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-26 Score=205.81 Aligned_cols=284 Identities=21% Similarity=0.217 Sum_probs=199.3
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEEc
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHL 161 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~~ 161 (424)
|+||||||+||++|+..|.+.||+|+++.|+........ ... +..-+.+.+.... ++|+|||+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~---------~~~-------v~~~~~~~~~~~~-~~DavINL 63 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNL---------HPN-------VTLWEGLADALTL-GIDAVINL 63 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhc---------Ccc-------ccccchhhhcccC-CCCEEEEC
Confidence 689999999999999999999999999999765322211 111 1122334444442 45999999
Q ss_pred ccccCc--hhhccChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 162 AAQAGV--RYAMQNPNSYVESNIAGFVNLLETCKSSDPQP-AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 162 Ag~~~~--~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~-~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
||..-. +++....+..++.-+..|..|.++..+...++ .+|..|..+.||...+..++|++++. .+.-+..-.+.
T Consensus 64 AG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g--~~Fla~lc~~W 141 (297)
T COG1090 64 AGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPPG--DDFLAQLCQDW 141 (297)
T ss_pred CCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCCC--CChHHHHHHHH
Confidence 997433 35555567899999999999999887554333 78888888999999999999997553 23344444555
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
|..+..... .|.|++.+|.|+|.|+.+. +++.+..-..-+.--.+ |++++.++|||++|+++++..++++..
T Consensus 142 E~~a~~a~~-~gtRvvllRtGvVLs~~GG---aL~~m~~~fk~glGG~~----GsGrQ~~SWIhieD~v~~I~fll~~~~ 213 (297)
T COG1090 142 EEEALQAQQ-LGTRVVLLRTGVVLSPDGG---ALGKMLPLFKLGLGGKL----GSGRQWFSWIHIEDLVNAILFLLENEQ 213 (297)
T ss_pred HHHHhhhhh-cCceEEEEEEEEEecCCCc---chhhhcchhhhccCCcc----CCCCceeeeeeHHHHHHHHHHHHhCcC
Confidence 666655433 4999999999999998654 22223222222222222 899999999999999999999999976
Q ss_pred ccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCC---CCCCcccccCChHHHH----hHcCCc
Q 042406 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP---RNGDVQFTHANISLAQ----RELGYM 391 (424)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~---~~~~~~~~~~d~s~~~----~~LG~~ 391 (424)
-+ +.||++.+.|++.++|...+.+.++++......+.- --++.....++..|+. ...||+
T Consensus 214 ls-------------Gp~N~taP~PV~~~~F~~al~r~l~RP~~~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~~aGF~ 280 (297)
T COG1090 214 LS-------------GPFNLTAPNPVRNKEFAHALGRALHRPAILPVPSFALRLLLGEMADLLLGGQRVLPKKLEAAGFQ 280 (297)
T ss_pred CC-------------CcccccCCCcCcHHHHHHHHHHHhCCCccccCcHHHHHHHhhhhHHHHhccchhhHHHHHHCCCe
Confidence 44 689999999999999999999999987644321100 0122223344443321 337888
Q ss_pred ccC-CHHHHHHHHHH
Q 042406 392 PTT-DLETGLKKFVR 405 (424)
Q Consensus 392 p~~-~l~~~l~~~v~ 405 (424)
.++ +++++|.+.+.
T Consensus 281 F~y~dl~~AL~~il~ 295 (297)
T COG1090 281 FQYPDLEEALADILK 295 (297)
T ss_pred eecCCHHHHHHHHHh
Confidence 775 79999887764
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=224.71 Aligned_cols=261 Identities=18% Similarity=0.207 Sum_probs=184.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEeCCCCchhhhHHH---HHh--------hhh-------ccCCeEEE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD---GVLGLDNFNNYYETSLKK---ARK--------GLL-------ERAGVFVI 136 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~---~~~--------~~~-------~~~~v~~~ 136 (424)
++|+|+|||||||||++|+++|++.+. +|+++.|..+........ ... +.. ...++..+
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v 197 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV 197 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence 689999999999999999999998764 689999976533221111 000 000 13579999
Q ss_pred EccCCCH------HHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCccc
Q 042406 137 DADINDK------SLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVY 210 (424)
Q Consensus 137 ~~Dl~d~------~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vy 210 (424)
.+|++++ +..+.+.++ +|+|||+|+.... ..+++..+++|+.|+.+++++|++.+..++|||+||+++|
T Consensus 198 ~GDl~d~~LGLs~~~~~~L~~~--vDiVIH~AA~v~f---~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVy 272 (605)
T PLN02503 198 VGNVCESNLGLEPDLADEIAKE--VDVIINSAANTTF---DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVN 272 (605)
T ss_pred EeeCCCcccCCCHHHHHHHHhc--CCEEEECcccccc---ccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceee
Confidence 9999987 345555564 5999999998653 2567889999999999999999887544589999999999
Q ss_pred CCCCC----CCCCCC--------------------C------------C---------------------CCCCCChHHH
Q 042406 211 GVNKK----VPFSEK--------------------D------------R---------------------TDQPASLYAA 233 (424)
Q Consensus 211 g~~~~----~~~~e~--------------------~------------~---------------------~~~~~~~Y~~ 233 (424)
|...+ .++... + . ...-.+.|..
T Consensus 273 G~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtYt~ 352 (605)
T PLN02503 273 GQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTYVF 352 (605)
T ss_pred cCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChHHH
Confidence 86531 122100 0 0 0011278999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccC----------CCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYG----------PWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
||+.+|.++.+... +++++|+||+.|.+ ++.. ...+.++ .+..| .+..+. ++++...|+|+|
T Consensus 353 TK~lAE~lV~~~~~--~LPv~IvRPsiV~st~~eP~pGw~d~~~--~~~p~~~-~~g~G-~lr~~~--~~~~~~~DiVPV 424 (605)
T PLN02503 353 TKAMGEMVINSMRG--DIPVVIIRPSVIESTWKDPFPGWMEGNR--MMDPIVL-YYGKG-QLTGFL--ADPNGVLDVVPA 424 (605)
T ss_pred HHHHHHHHHHHhcC--CCCEEEEcCCEecccccCCccccccCcc--ccchhhh-heecc-ceeEEE--eCCCeeEeEEee
Confidence 99999999987653 89999999999944 3221 1112221 12223 233232 688999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC--CcccHHHHHHHHHHHhCc
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT--TPVPVSRLVSLLEKILKV 359 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~el~~~i~~~~g~ 359 (424)
|.|+.+++.++....... ...+++||++++ +++++.|+++.+.+.+..
T Consensus 425 D~vvna~i~a~a~~~~~~--------~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~ 474 (605)
T PLN02503 425 DMVVNATLAAMAKHGGAA--------KPEINVYQIASSVVNPLVFQDLARLLYEHYKS 474 (605)
T ss_pred cHHHHHHHHHHHhhhccc--------CCCCCEEEeCCCCCCCeEHHHHHHHHHHHHhh
Confidence 999999998854322110 023489999988 999999999999987764
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-25 Score=206.25 Aligned_cols=236 Identities=18% Similarity=0.157 Sum_probs=171.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
.|++|||||+|+||++++++|+++|++|++++|+.+.... .... ...++.++++|++|.+++.+++++.
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~----~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDD----LKAR--YGDRLWVLQLDVTDSAAVRAVVDRAFAALG 75 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHh--ccCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3689999999999999999999999999999996432211 1111 1246889999999999998887652
Q ss_pred CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||....... .++.+..+++|+.|+.++++++ ++.+.+ +||++||.+.... .
T Consensus 76 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~------------~ 142 (276)
T PRK06482 76 RIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGG-RIVQVSSEGGQIA------------Y 142 (276)
T ss_pred CCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcCcccccC------------C
Confidence 57999999998654322 2234578999999999999987 444544 8999999654321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccc---cCCCCCCC-------C-cHHHHHHHHHcCCceeEEecC
Q 042406 226 QPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTV---YGPWGRPD-------M-AYFFFTRDIIRGKRITVYEAP 291 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v---~G~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~ 291 (424)
.+.+.|+.||++.|.+++.++++ +|++++++|||.+ ||++.... . ....+...+ ....+.+
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---- 217 (276)
T PRK06482 143 PGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRAL-ADGSFAI---- 217 (276)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHH-hhccCCC----
Confidence 34688999999999999998876 5999999999988 55432211 1 111222222 2221111
Q ss_pred CCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCc
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKV 359 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~ 359 (424)
+.+++|++++++.++..... +..||+++++..+..|+++.+.+.++.
T Consensus 218 --------~~d~~~~~~a~~~~~~~~~~-------------~~~~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK06482 218 --------PGDPQKMVQAMIASADQTPA-------------PRRLTLGSDAYASIRAALSERLAALEA 264 (276)
T ss_pred --------CCCHHHHHHHHHHHHcCCCC-------------CeEEecChHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999875432 157999999989999888888877764
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=223.29 Aligned_cols=236 Identities=18% Similarity=0.189 Sum_probs=170.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||+||||++|+++|+++|++|++++|.... ....+++++.+|++|.. +.++++++ |+||
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~------------~~~~~ve~v~~Dl~d~~-l~~al~~~--D~VI 65 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHD------------ALDPRVDYVCASLRNPV-LQELAGEA--DAVI 65 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhh------------cccCCceEEEccCCCHH-HHHHhcCC--CEEE
Confidence 579999999999999999999999999999984321 11246889999999985 77777755 9999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|+|+.... ....+|+.|+.|++++|++.++ ++||+||. +|.. ..|. .+|
T Consensus 66 HLAa~~~~--------~~~~vNv~Gt~nLleAA~~~Gv--RiV~~SS~--~G~~---------------~~~~----~aE 114 (699)
T PRK12320 66 HLAPVDTS--------APGGVGITGLAHVANAAARAGA--RLLFVSQA--AGRP---------------ELYR----QAE 114 (699)
T ss_pred EcCccCcc--------chhhHHHHHHHHHHHHHHHcCC--eEEEEECC--CCCC---------------cccc----HHH
Confidence 99986321 1235899999999999999885 69999986 3321 1122 356
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCC--CcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPD--MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
.++.. ++++++++|++++|||+.... .++..++.....++++ .++|++|++++++.+++..
T Consensus 115 ~ll~~----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~pI-------------~vIyVdDvv~alv~al~~~ 177 (699)
T PRK12320 115 TLVST----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARPI-------------RVLHLDDLVRFLVLALNTD 177 (699)
T ss_pred HHHHh----cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCce-------------EEEEHHHHHHHHHHHHhCC
Confidence 55433 478999999999999965432 2334444443333332 2589999999999988753
Q ss_pred cccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCcccCCHH
Q 042406 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLE 397 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p~~~l~ 397 (424)
. +++|||++++.+|+.|+.+++...... .... ...+.....-|.+.++..++|.|+.+++
T Consensus 178 ~--------------~GiyNIG~~~~~Si~el~~~i~~~~p~-~~~~-----~~~~~~~~~pdi~~a~~~~~w~~~~~~~ 237 (699)
T PRK12320 178 R--------------NGVVDLATPDTTNVVTAWRLLRSVDPH-LRTR-----RVRSWEQLIPEVDIAAVQEDWNFEFGWQ 237 (699)
T ss_pred C--------------CCEEEEeCCCeeEHHHHHHHHHHhCCC-cccc-----ccccHHHhCCCCchhhhhcCCCCcchHH
Confidence 2 159999999999999999999776221 1111 1233334566777877889999998774
Q ss_pred H
Q 042406 398 T 398 (424)
Q Consensus 398 ~ 398 (424)
.
T Consensus 238 ~ 238 (699)
T PRK12320 238 A 238 (699)
T ss_pred H
Confidence 3
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=202.70 Aligned_cols=232 Identities=16% Similarity=0.129 Sum_probs=165.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|++|||||+|+||+++++.|+++|++|++++|+.+........... ....+.++++|++|.+++.+++++.
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK---AGGKAIGVAMDVTNEDAVNAGIDKVAE 80 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh---cCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999976544433332221 1345788999999999999888764
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHH----HHHHHHHH-HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAG----FVNLLETC-KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g----~~~ll~a~-~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||...... ..+..+..+++|+.+ +.++++++ +..+.+ +||++||...+..
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~-~iv~~ss~~~~~~--------- 150 (262)
T PRK13394 81 RFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGG-VVIYMGSVHSHEA--------- 150 (262)
T ss_pred HcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCc-EEEEEcchhhcCC---------
Confidence 4799999999854322 123345688899999 66677777 555554 9999999654421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCce-------eEEecC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRI-------TVYEAP 291 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 291 (424)
..+...|+.+|.+.+.+++.++++ .+++++++|||.+++|..... +......... .++
T Consensus 151 ---~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--- 218 (262)
T PRK13394 151 ---SPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQ------IPEQAKELGISEEEVVKKVM--- 218 (262)
T ss_pred ---CCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhh------hHhhhhccCCChHHHHHHHH---
Confidence 134578999999999999998876 389999999999999853211 1111000000 011
Q ss_pred CCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+.+...++|++++|++++++.++...... .+|+.|++.++.
T Consensus 219 ~~~~~~~~~~~~~dva~a~~~l~~~~~~~----------~~g~~~~~~~g~ 259 (262)
T PRK13394 219 LGKTVDGVFTTVEDVAQTVLFLSSFPSAA----------LTGQSFVVSHGW 259 (262)
T ss_pred hcCCCCCCCCCHHHHHHHHHHHcCccccC----------CcCCEEeeCCce
Confidence 12334567999999999999998765321 234889988764
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=202.05 Aligned_cols=247 Identities=15% Similarity=0.093 Sum_probs=173.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+++||||+|+||.++++.|+++|++|++++|+.+........... .....++.++.+|++|.+++.+++++.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEA-LKGAGAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-ccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999965433222211111 111246889999999999998888754
Q ss_pred --CccEEEEcccccCc--h---hhccChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGV--R---YAMQNPNSYVESNIAGFVNLLETCKSSD---PQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~--~---~~~~~~~~~~~~N~~g~~~ll~a~~~~~---~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||.... . ...++....+++|+.++.++++++.+.. ...+||++||...+..
T Consensus 84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~----------- 152 (276)
T PRK05875 84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNT----------- 152 (276)
T ss_pred cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCC-----------
Confidence 67999999996422 1 1122345688999999999888765432 1238999999877542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
..+.+.|+.+|++.|.+++.+.+++ ++++++||||.+.++..............+....+ ...+
T Consensus 153 -~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~ 219 (276)
T PRK05875 153 -HRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRACTP------------LPRV 219 (276)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHcCCC------------CCCC
Confidence 1345789999999999999998765 69999999999987643211100111112221111 1236
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc----cHHHHHHHHHHHhC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV----PVSRLVSLLEKILK 358 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----s~~el~~~i~~~~g 358 (424)
++++|+|++++.++..+... ..+++|+++++..+ +..|+++.+.+..+
T Consensus 220 ~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 220 GEVEDVANLAMFLLSDAASW----------ITGQVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred cCHHHHHHHHHHHcCchhcC----------cCCCEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 78999999999998775421 23489999998776 66777776665544
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-25 Score=205.94 Aligned_cols=218 Identities=18% Similarity=0.205 Sum_probs=132.3
Q ss_pred EEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhh--------h---hccCCeEEEEccCCCH------H
Q 042406 84 VTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKG--------L---LERAGVFVIDADINDK------S 144 (424)
Q Consensus 84 ItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~--------~---~~~~~v~~~~~Dl~d~------~ 144 (424)
|||||||||++|+++|++++. +|+|+.|..+...... ..... . ....+++++.+|++++ +
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~-rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~ 79 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALE-RLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDE 79 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHH-HHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchh-hhhhhcccccchhhhhhhhhccEEEEeccccccccCCChH
Confidence 799999999999999999987 9999999775422211 11100 0 1267999999999974 4
Q ss_pred HHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCC------C
Q 042406 145 LLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVP------F 218 (424)
Q Consensus 145 ~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~------~ 218 (424)
...++.+++ |+|||||+.++.. .+.+...++|+.||.++++.|.+...+ +|+|+||+.+.+...... .
T Consensus 80 ~~~~L~~~v--~~IiH~Aa~v~~~---~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iSTa~v~~~~~~~~~~~~~~~ 153 (249)
T PF07993_consen 80 DYQELAEEV--DVIIHCAASVNFN---APYSELRAVNVDGTRNLLRLAAQGKRK-RFHYISTAYVAGSRPGTIEEKVYPE 153 (249)
T ss_dssp HHHHHHHH----EEEE--SS-SBS----S--EEHHHHHHHHHHHHHHHTSSS----EEEEEEGGGTTS-TTT--SSS-HH
T ss_pred Hhhcccccc--ceeeecchhhhhc---ccchhhhhhHHHHHHHHHHHHHhccCc-ceEEeccccccCCCCCccccccccc
Confidence 667777777 9999999987643 344568899999999999999977665 999999955555433211 1
Q ss_pred CCC--CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC----CCCcHHHHHHHHHcCCceeEEecCC
Q 042406 219 SEK--DRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR----PDMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 219 ~e~--~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
.+. +......+.|.+||+.+|.+++++.++.|++++|+|||.|+|.... .......++......+.++.. ++
T Consensus 154 ~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~--~~ 231 (249)
T PF07993_consen 154 EEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDL--PG 231 (249)
T ss_dssp H--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES---SB
T ss_pred ccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCcccc--cC
Confidence 111 1122344789999999999999999888999999999999994321 122233333333333333322 14
Q ss_pred CCccccccccHHHHHHHH
Q 042406 293 GASVARDFTYIDDIVKGC 310 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~ 310 (424)
..+...|+++||.+|+++
T Consensus 232 ~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 232 DPDARLDLVPVDYVARAI 249 (249)
T ss_dssp ---TT--EEEHHHHHHHH
T ss_pred CCCceEeEECHHHHHhhC
Confidence 456679999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-24 Score=197.70 Aligned_cols=226 Identities=16% Similarity=0.148 Sum_probs=159.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.. ......... .....+.++.+|++|.+++.++++..
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELR---AAGGEALALTADLETYAGAQAAMAAAVE 80 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHH---hcCCeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999632 111111111 11346789999999999988887754
Q ss_pred ---CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHH----HHHHhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLL----ETCKSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll----~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||.... ....++.+..+++|+.++..++ +.+++.+.+ +||++||...++.
T Consensus 81 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~~sS~~~~~~--------- 150 (260)
T PRK12823 81 AFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGG-AIVNVSSIATRGI--------- 150 (260)
T ss_pred HcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-eEEEEcCccccCC---------
Confidence 68999999985321 1122334567899999876554 444455544 8999999877642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC-----------CCCcHHHHHHHHHcCCceeE
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGR-----------PDMAYFFFTRDIIRGKRITV 287 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~-----------~~~~~~~~~~~~~~~~~~~~ 287 (424)
+...|+.||++.+.+++.++.++ |+++++|+||.|++|... .....+.+...+..+.++..
T Consensus 151 -----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (260)
T PRK12823 151 -----NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMKR 225 (260)
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCccc
Confidence 23579999999999999998775 899999999999997311 01112233333333333222
Q ss_pred EecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 288 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+.+++|+|++++.++...... ..|++|++.+|+
T Consensus 226 ------------~~~~~dva~~~~~l~s~~~~~----------~~g~~~~v~gg~ 258 (260)
T PRK12823 226 ------------YGTIDEQVAAILFLASDEASY----------ITGTVLPVGGGD 258 (260)
T ss_pred ------------CCCHHHHHHHHHHHcCccccc----------ccCcEEeecCCC
Confidence 457899999999888654321 344899998765
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=205.26 Aligned_cols=254 Identities=15% Similarity=0.104 Sum_probs=175.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc----cC-c
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV----VA-F 155 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~----~~-~ 155 (424)
+|+||||||+||++++++|+++|++|++++|+.++. ...+++.+.+|+.|++++.++++. .+ +
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~------------~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~ 68 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS------------AGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEI 68 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc------------cCCCCccccccCCCHHHHHHHHhcccCcCCce
Confidence 489999999999999999999999999999976532 123677788999999999999942 12 5
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATK 235 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK 235 (424)
|.|+|+++... + ....+.+++++|++.+++ +||++||..++.. . ..+
T Consensus 69 d~v~~~~~~~~------~-------~~~~~~~~i~aa~~~gv~-~~V~~Ss~~~~~~-------------~------~~~ 115 (285)
T TIGR03649 69 SAVYLVAPPIP------D-------LAPPMIKFIDFARSKGVR-RFVLLSASIIEKG-------------G------PAM 115 (285)
T ss_pred eEEEEeCCCCC------C-------hhHHHHHHHHHHHHcCCC-EEEEeeccccCCC-------------C------chH
Confidence 99999986421 1 012456899999999986 9999998655321 0 012
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhh
Q 042406 236 KAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315 (424)
Q Consensus 236 ~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 315 (424)
...|.++++. .|++++++||+.+|+..... .+...+.....+.. +.++..++||+++|+|++++.++.
T Consensus 116 ~~~~~~l~~~---~gi~~tilRp~~f~~~~~~~-----~~~~~~~~~~~~~~----~~g~~~~~~v~~~Dva~~~~~~l~ 183 (285)
T TIGR03649 116 GQVHAHLDSL---GGVEYTVLRPTWFMENFSEE-----FHVEAIRKENKIYS----ATGDGKIPFVSADDIARVAYRALT 183 (285)
T ss_pred HHHHHHHHhc---cCCCEEEEeccHHhhhhccc-----ccccccccCCeEEe----cCCCCccCcccHHHHHHHHHHHhc
Confidence 2233333321 38999999999998653111 11122333333322 346778999999999999999988
Q ss_pred hccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCC-------CCCcc-------------
Q 042406 316 TAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR-------NGDVQ------------- 375 (424)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~-------~~~~~------------- 375 (424)
.+.. .+++|++++++.+|+.|+++.+.+.+|++......+... .+...
T Consensus 184 ~~~~------------~~~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 251 (285)
T TIGR03649 184 DKVA------------PNTDYVVLGPELLTYDDVAEILSRVLGRKITHVKLTEEELAQRLQSFGMPEDLARMLASLDTAV 251 (285)
T ss_pred CCCc------------CCCeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 7542 237899999999999999999999999987665543211 00000
Q ss_pred ---cccCChHHHHhHcCCcccCCHHHHHHHHH
Q 042406 376 ---FTHANISLAQRELGYMPTTDLETGLKKFV 404 (424)
Q Consensus 376 ---~~~~d~s~~~~~LG~~p~~~l~~~l~~~v 404 (424)
.....+...++.+|..|+ ++++.+++..
T Consensus 252 ~~g~~~~~~~~~~~~~G~~p~-~~~~~~~~~~ 282 (285)
T TIGR03649 252 KNGAEVRLNDVVKAVTGSKPR-GFRDFAESNK 282 (285)
T ss_pred hCCccccccchHHHHhCcCCc-cHHHHHHHhh
Confidence 001124455666888787 7888776653
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-24 Score=197.19 Aligned_cols=229 Identities=17% Similarity=0.176 Sum_probs=166.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++..
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVA---DGGTAIAVQVDVSDPDSAKAMADATVS 79 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999975433222111111 1236788999999999998888754
Q ss_pred ---CccEEEEcccccCc-------hhhccChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-------RYAMQNPNSYVESNIAGFVNLLETCKSSD---PQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-------~~~~~~~~~~~~~N~~g~~~ll~a~~~~~---~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||.... ....++.+..+++|+.++.++++++.+.. ..++||++||...|.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--------- 150 (250)
T PRK07774 80 AFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL--------- 150 (250)
T ss_pred HhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC---------
Confidence 57999999997531 11223345689999999999888876531 124899999987763
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
+.+.|+.||++.|.+++.+++++ ++++++++||.+.++..... ....+...+..+.+...
T Consensus 151 ------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~-~~~~~~~~~~~~~~~~~---------- 213 (250)
T PRK07774 151 ------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTV-TPKEFVADMVKGIPLSR---------- 213 (250)
T ss_pred ------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCcccccc-CCHHHHHHHHhcCCCCC----------
Confidence 34679999999999999998775 79999999999988754321 12234444444433221
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
+.+++|+|++++.++...... ..+++|++.++..++
T Consensus 214 --~~~~~d~a~~~~~~~~~~~~~----------~~g~~~~v~~g~~~~ 249 (250)
T PRK07774 214 --MGTPEDLVGMCLFLLSDEASW----------ITGQIFNVDGGQIIR 249 (250)
T ss_pred --CcCHHHHHHHHHHHhChhhhC----------cCCCEEEECCCeecc
Confidence 456899999999988764321 234899999886543
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=197.28 Aligned_cols=232 Identities=14% Similarity=0.069 Sum_probs=162.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
..+++|+||||+|+||++++++|+++|++|++++|+.....+...... .......+.++.+|++|.+++.++++..
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAEL-NALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH-HhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999986532222111111 1112245889999999999999988864
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSD--PQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~--~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||...... ...+.+..+++|+.|+.++++++.+.- ....++++||.... . +.
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~ 150 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAE-----------R-PL 150 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhc-----------C-CC
Confidence 5799999999754321 123356789999999999999986421 12256666653221 1 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
.+...|+.||+++|.+++.++.++ +++++++|||.++||.... .+...+......+.++.. +.++
T Consensus 151 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~-~~~~~~~~~~~~~~~~~~------------~~~~ 217 (249)
T PRK09135 151 KGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGN-SFDEEARQAILARTPLKR------------IGTP 217 (249)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCccccc-cCCHHHHHHHHhcCCcCC------------CcCH
Confidence 567899999999999999998875 6999999999999997543 222233333333332211 2358
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
+|+|+++..++..... ..|++|+++++..++
T Consensus 218 ~d~a~~~~~~~~~~~~-----------~~g~~~~i~~g~~~~ 248 (249)
T PRK09135 218 EDIAEAVRFLLADASF-----------ITGQILAVDGGRSLT 248 (249)
T ss_pred HHHHHHHHHHcCcccc-----------ccCcEEEECCCeecc
Confidence 9999999766653221 234899999987654
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=200.87 Aligned_cols=233 Identities=13% Similarity=0.108 Sum_probs=166.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhh-hHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET-SLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.+++|++|||||+|+||+++++.|+++|++|++..+..+.... ...... . ....++.++.+|++|.++++++++++
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 129 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLI-Q-AEGRKAVALPGDLKDEAFCRQLVERAV 129 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHH-H-HcCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999988775432111 111111 1 12346789999999999998888764
Q ss_pred ----CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.... ...+||++||...|...
T Consensus 130 ~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 199 (300)
T PRK06128 130 KELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPS---------- 199 (300)
T ss_pred HHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCC----------
Confidence 689999999974321 1233456799999999999999987542 12489999998887531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.....|+.||.+.+.+++.++.+. |+++++|+||.|.+|..............+....+ ...+
T Consensus 200 --~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~p------------~~r~ 265 (300)
T PRK06128 200 --PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSETP------------MKRP 265 (300)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCCC------------CCCC
Confidence 334679999999999999998764 89999999999999854321111222222222111 1236
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
.+.+|+|.+++.++...... ..|++|++.+|..+
T Consensus 266 ~~p~dva~~~~~l~s~~~~~----------~~G~~~~v~gg~~~ 299 (300)
T PRK06128 266 GQPVEMAPLYVLLASQESSY----------VTGEVFGVTGGLLL 299 (300)
T ss_pred cCHHHHHHHHHHHhCccccC----------ccCcEEeeCCCEeC
Confidence 68899999999887654321 33489999987654
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=206.04 Aligned_cols=252 Identities=13% Similarity=0.092 Sum_probs=173.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|++|||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.+++.++++..
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRA---QGAEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999965443332222111 1346888999999999999988764
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHH----HHhcCCC-----CeEEEecCCcccCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLET----CKSSDPQ-----PAIVWASSSSVYGVNKKVP 217 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a----~~~~~~~-----~~~v~~SS~~vyg~~~~~~ 217 (424)
++|+||||||...... ..++.+..+++|+.|+.+++++ +.+.+.+ .++|++||.+.+...
T Consensus 80 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---- 155 (287)
T PRK06194 80 RFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP---- 155 (287)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC----
Confidence 5799999999865422 1233456799999999887666 4444431 389999998776431
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCC
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
.+...|+.+|++.+.+++.++.++ ++++++++||.|..+-. ....+.+..++ +
T Consensus 156 --------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~-----------~~~~~~~~~~~---~ 213 (287)
T PRK06194 156 --------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIW-----------QSERNRPADLA---N 213 (287)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccc-----------cccccCchhcc---c
Confidence 345789999999999999988765 47888888887765421 12233444444 4
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCC
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNG 372 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~ 372 (424)
++...++|++++|++.+.... . .++..|+++.+.+.+.........+.....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~--------------------~--------~~s~~dva~~i~~~~~~~~~~~~~~~~~~~ 265 (287)
T PRK06194 214 TAPPTRSQLIAQAMSQKAVGS--------------------G--------KVTAEEVAQLVFDAIRAGRFYIYSHPQALA 265 (287)
T ss_pred CccccchhhHHHHHHHhhhhc--------------------c--------CCCHHHHHHHHHHHHHcCCeEEEcCHHHHH
Confidence 567788888888887764210 0 168888888888876543333322222233
Q ss_pred CcccccCChHHH
Q 042406 373 DVQFTHANISLA 384 (424)
Q Consensus 373 ~~~~~~~d~s~~ 384 (424)
+......|.+++
T Consensus 266 ~~~~~~~~~~~~ 277 (287)
T PRK06194 266 SVRTRMEDIVQQ 277 (287)
T ss_pred HHHHHHHHHHHh
Confidence 333444555555
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=194.56 Aligned_cols=229 Identities=17% Similarity=0.123 Sum_probs=166.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
..+|+||||||+|+||++|+++|+++|++|+++.|.............. ....++.++.+|+.|.+++.+++++.
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVE--ALGRRAQAVQADVTDKAALEAAVAAAVER 81 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHH--hcCCceEEEECCcCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999998888765432222111111 12356889999999999999888764
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+|||+||...... ...+.+..+++|+.++.++++.+ ++.+.+ +||++||.+.+...
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~i~~SS~~~~~~~---------- 150 (249)
T PRK12825 82 FGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGG-RIVNISSVAGLPGW---------- 150 (249)
T ss_pred cCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEECccccCCCC----------
Confidence 6799999999754322 22334678999999999888876 445544 99999998776421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.+...|+.+|.+.+.+++.++++ .+++++++|||.++|+...... ....... .... ....+
T Consensus 151 --~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~-~~~~~~~---~~~~----------~~~~~ 214 (249)
T PRK12825 151 --PGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATI-EEAREAK---DAET----------PLGRS 214 (249)
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCcccccc-chhHHhh---hccC----------CCCCC
Confidence 34578999999999999988765 4899999999999998654321 1111110 0011 12238
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
++.+|+++++..++...... ..|++|+++++..+
T Consensus 215 ~~~~dva~~~~~~~~~~~~~----------~~g~~~~i~~g~~~ 248 (249)
T PRK12825 215 GTPEDIARAVAFLCSDASDY----------ITGQVIEVTGGVDV 248 (249)
T ss_pred cCHHHHHHHHHHHhCccccC----------cCCCEEEeCCCEee
Confidence 99999999999998764321 34589999987643
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-24 Score=196.42 Aligned_cols=232 Identities=13% Similarity=0.097 Sum_probs=166.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|++|||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKG---QGLSAHALAFDVTDHDAVRAAIDAFEA 83 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh---cCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999976543332222211 1245889999999999999998765
Q ss_pred ---CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||....... .++.+..+.+|+.++.++++++.+. +. ++||++||......
T Consensus 84 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~iss~~~~~~---------- 152 (255)
T PRK07523 84 EIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGA-GKIINIASVQSALA---------- 152 (255)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-eEEEEEccchhccC----------
Confidence 57999999998543222 2223568889999999998887653 33 38999999654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|+.+|.+.+.+++.++.+ +|+++++|+||.+.++..........+...+....+ ...
T Consensus 153 --~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 218 (255)
T PRK07523 153 --RPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRTP------------AGR 218 (255)
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcCC------------CCC
Confidence 134578999999999999999864 489999999999998843211101122222222221 123
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
+..++|+|.+++.++...... ..|+++++.+|...|
T Consensus 219 ~~~~~dva~~~~~l~~~~~~~----------~~G~~i~~~gg~~~~ 254 (255)
T PRK07523 219 WGKVEELVGACVFLASDASSF----------VNGHVLYVDGGITAS 254 (255)
T ss_pred CcCHHHHHHHHHHHcCchhcC----------ccCcEEEECCCeecc
Confidence 678999999999998764321 334889998876544
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-23 Score=194.78 Aligned_cols=229 Identities=15% Similarity=0.103 Sum_probs=166.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++.+|+|+||||+|+||.+++++|+++|++|++++|+.+.......... .....+.++.+|++|.+++.++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVE---AAGGKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999997543322222111 11235889999999999999998764
Q ss_pred ---CccEEEEcccccCc----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV----RYAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+|||+||.... .....+.+..+.+|+.++.++++++. +.+. ++||++||...++.
T Consensus 80 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~ss~~~~~~---------- 148 (251)
T PRK12826 80 DFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGG-GRIVLTSSVAGPRV---------- 148 (251)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEEechHhhcc----------
Confidence 57999999988654 22233456789999999999988774 3444 48999999877621
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
...+...|+.+|.+.+.+++.++.+. +++++++|||.++||...... ...+...+....++ ..
T Consensus 149 -~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~ 214 (251)
T PRK12826 149 -GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLG-DAQWAEAIAAAIPL------------GR 214 (251)
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcC-chHHHHHHHhcCCC------------CC
Confidence 11345789999999999999987653 899999999999998643211 11112222222111 14
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+++++|+|.+++.++...... ..|++|++.+|.
T Consensus 215 ~~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~~g~ 247 (251)
T PRK12826 215 LGEPEDIAAAVLFLASDEARY----------ITGQTLPVDGGA 247 (251)
T ss_pred CcCHHHHHHHHHHHhCccccC----------cCCcEEEECCCc
Confidence 889999999999887654321 344899998765
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=202.35 Aligned_cols=234 Identities=16% Similarity=0.120 Sum_probs=166.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+.+|+++||||+|+||.++++.|+++|++|++++|+.+....... . . ...+.++.+|++|.+++.++++.+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~----~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAAL----E-I-GPAAIAVSLDVTRQDSIDRIVAAAVE 76 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----H-h-CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999996543322211 1 1 235889999999999999888764
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcC----CCCeEEEecCCc-ccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSD----PQPAIVWASSSS-VYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~----~~~~~v~~SS~~-vyg~~~~~~~~e~ 221 (424)
++|+||||||...... ..++.+..+++|+.++.++++++.... ...+||++||.. .++.
T Consensus 77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------- 147 (257)
T PRK07067 77 RFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGE--------- 147 (257)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCC---------
Confidence 6899999999754321 223456789999999999998886432 223899999954 3331
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHc---CCceeEEecCCCCc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIR---GKRITVYEAPDGAS 295 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 295 (424)
.+...|+.||.+.+.+++.++.+ .|+++++|+||.++++..... .. ....... +.....+ +...
T Consensus 148 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~--~~-~~~~~~~~~~~~~~~~~---~~~~ 217 (257)
T PRK07067 148 ----ALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQV--DA-LFARYENRPPGEKKRLV---GEAV 217 (257)
T ss_pred ----CCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhh--hh-hhhhccCCCHHHHHHHH---hhcC
Confidence 35678999999999999998875 489999999999999743211 00 0000000 0000001 1223
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
....+++++|+|++++.++...... ..|++|++.+|..+
T Consensus 218 ~~~~~~~~~dva~~~~~l~s~~~~~----------~~g~~~~v~gg~~~ 256 (257)
T PRK07067 218 PLGRMGVPDDLTGMALFLASADADY----------IVAQTYNVDGGNWM 256 (257)
T ss_pred CCCCccCHHHHHHHHHHHhCccccc----------ccCcEEeecCCEeC
Confidence 3456999999999999988765322 34589999988654
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=196.29 Aligned_cols=245 Identities=13% Similarity=0.095 Sum_probs=168.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+........... ...++.++.+|++|.+++.++++++
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRA---EGFDVHGVMCDVRHREEVTHLADEAFR 79 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999876543332222111 1235788999999999999888765
Q ss_pred ---CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||....... .++.+..+++|+.|+.++++++. +.+.+++||++||...+..
T Consensus 80 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~---------- 149 (275)
T PRK05876 80 LLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVP---------- 149 (275)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccC----------
Confidence 58999999998543222 22335688999999998888764 3443348999999877642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|+.||.+.+.+.+.++.++ |+++++|+||.+.++...... ...............+ +.....++
T Consensus 150 --~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~ 222 (275)
T PRK05876 150 --NAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSE--RIRGAACAQSSTTGSP---GPLPLQDD 222 (275)
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchh--hhcCcccccccccccc---cccccccc
Confidence 1456789999999888888777554 899999999999887432110 0000000000111111 22334567
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g 358 (424)
+++++|+|++++.++.+. +.|.+.+ +....++.+...+...
T Consensus 223 ~~~~~dva~~~~~ai~~~----------------~~~~~~~--~~~~~~~~~~~~~~~~ 263 (275)
T PRK05876 223 NLGVDDIAQLTADAILAN----------------RLYVLPH--AASRASIRRRFERIDR 263 (275)
T ss_pred CCCHHHHHHHHHHHHHcC----------------CeEEecC--hhhHHHHHHHHHHHHH
Confidence 899999999999998754 3455542 3455666666655543
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=197.56 Aligned_cols=238 Identities=15% Similarity=0.137 Sum_probs=171.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
.+|+|+||||+|+||++++++|+++|++|++++|+.+..... .. .....+.++++|++|.+++.++++.+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~----~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADL----AE--KYGDRLLPLALDVTDRAAVFAAVETAVEHF 75 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH----HH--hccCCeeEEEccCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999965432211 11 11346788999999999998887764
Q ss_pred -CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||...... ..++.+..+++|+.++.++++++ ++.+.+ ++|++||.+.+...
T Consensus 76 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vsS~~~~~~~----------- 143 (275)
T PRK08263 76 GRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQISSIGGISAF----------- 143 (275)
T ss_pred CCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEcChhhcCCC-----------
Confidence 6799999999865422 22345678999999987777765 455554 89999997776531
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-------cHHHHHHHHHcCCceeEEecCCCC
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDM-------AYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.....|+.+|++.+.+++.++.+ .|++++++|||.+.++...... ....+...+.. .
T Consensus 144 -~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 210 (275)
T PRK08263 144 -PMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAE------------Q 210 (275)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHH------------H
Confidence 33478999999999999998875 5899999999998876432110 01111111111 1
Q ss_pred cccccc-ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhC
Q 042406 295 SVARDF-TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358 (424)
Q Consensus 295 ~~~~~~-i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g 358 (424)
.....+ ++++|++++++.+++.+.. .++.|+..++..+++.++.+.+.+..+
T Consensus 211 ~~~~~~~~~p~dva~~~~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (275)
T PRK08263 211 WSERSVDGDPEAAAEALLKLVDAENP------------PLRLFLGSGVLDLAKADYERRLATWEE 263 (275)
T ss_pred HHhccCCCCHHHHHHHHHHHHcCCCC------------CeEEEeCchHHHHHHHHHHHHHHHHHH
Confidence 112235 8899999999999987642 225555555678999999999988644
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=190.26 Aligned_cols=208 Identities=16% Similarity=0.134 Sum_probs=163.2
Q ss_pred CCCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 73 RPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 73 ~~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
+.++.+|++||||||++++|+.++.+|+++|..++++|.+.+...+..+..+.. ..++.+.||++|.+.+.+..++
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~----g~~~~y~cdis~~eei~~~a~~ 107 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI----GEAKAYTCDISDREEIYRLAKK 107 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc----CceeEEEecCCCHHHHHHHHHH
Confidence 466789999999999999999999999999999999999998888877766654 3799999999999999988877
Q ss_pred c-----CccEEEEcccccCchhhccCh----HHHHHHHHHHH----HHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCC
Q 042406 153 V-----AFTHVMHLAAQAGVRYAMQNP----NSYVESNIAGF----VNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~~~~~~~~----~~~~~~N~~g~----~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
+ ++|++|||||++......+.+ +.++++|+.|. ++++..+.+.+.+ ++|.++|+..+-.
T Consensus 108 Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~G-HIV~IaS~aG~~g------- 179 (300)
T KOG1201|consen 108 VKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNG-HIVTIASVAGLFG------- 179 (300)
T ss_pred HHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCc-eEEEehhhhcccC-------
Confidence 6 689999999998765433332 46899999995 5567777777765 8998888655432
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh------CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCC
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY------GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~------~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
.....+|++||+++..+.+++..+. |++++.++|+.+=.. ++.. ..+.
T Consensus 180 -----~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tg----------mf~~---~~~~-------- 233 (300)
T KOG1201|consen 180 -----PAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTG----------MFDG---ATPF-------- 233 (300)
T ss_pred -----CccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecccc----------ccCC---CCCC--------
Confidence 1456889999999988888887553 799999999987532 1111 1111
Q ss_pred CccccccccHHHHHHHHHHHhhhccc
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
......+..+.+|+.++.++.....
T Consensus 234 -~~l~P~L~p~~va~~Iv~ai~~n~~ 258 (300)
T KOG1201|consen 234 -PTLAPLLEPEYVAKRIVEAILTNQA 258 (300)
T ss_pred -ccccCCCCHHHHHHHHHHHHHcCCc
Confidence 2234578889999999999887653
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=194.83 Aligned_cols=230 Identities=17% Similarity=0.150 Sum_probs=161.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+|+||||+|+||.+++++|+++|++|++++|+.+........... ...++.++.+|++|.+++.++++..
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK---AGGKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999976543332221111 2356889999999999999888754
Q ss_pred --CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHH----HHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNL----LETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~l----l~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||....... .++.+..+++|+.++.++ ++++++.+.+ +||++||...+..
T Consensus 79 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~iss~~~~~~----------- 146 (258)
T PRK12429 79 FGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGG-RIINMASVHGLVG----------- 146 (258)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCe-EEEEEcchhhccC-----------
Confidence 57999999997544322 222356788999995544 5555555554 8999999765432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCcee-------EEecCCC
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRIT-------VYEAPDG 293 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 293 (424)
..+.+.|+.+|.+.+.+++.++.+. +++++++|||.+++|..... +.......... .+ ..
T Consensus 147 -~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~ 216 (258)
T PRK12429 147 -SAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQ------IPDLAKERGISEEEVLEDVL---LP 216 (258)
T ss_pred -CCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhh------hhhhccccCCChHHHHHHHH---hc
Confidence 1346789999999999999887654 79999999999999853211 11111000000 00 11
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
....+++++++|+|++++.++...... ..++.|++.+|
T Consensus 217 ~~~~~~~~~~~d~a~~~~~l~~~~~~~----------~~g~~~~~~~g 254 (258)
T PRK12429 217 LVPQKRFTTVEEIADYALFLASFAAKG----------VTGQAWVVDGG 254 (258)
T ss_pred cCCccccCCHHHHHHHHHHHcCccccC----------ccCCeEEeCCC
Confidence 223457999999999999988764321 23488998876
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-23 Score=190.88 Aligned_cols=229 Identities=14% Similarity=0.068 Sum_probs=160.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-eCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGL-DNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++|+++||||+|+||++++++|+++|++|+++ +|+....+....... ....++.++.+|++|++++.++++++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIE---ALGRKALAVKANVGDVEKIKEMFAQIDE 78 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH---hcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999998774 665433222211111 12346889999999999999988865
Q ss_pred ---CccEEEEcccccCchhhcc----ChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYAMQ----NPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~~~----~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||........+ +.+..+.+|+.++.++++++.+ .+. ++||++||...+..
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~~sS~~~~~~---------- 147 (250)
T PRK08063 79 EFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGG-GKIISLSSLGSIRY---------- 147 (250)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-eEEEEEcchhhccC----------
Confidence 5899999999754322222 2245788999999888887764 333 39999999655431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|+.+|.+.|.+++.++.+ .|+++++|+||.+.++..........+........+ ...
T Consensus 148 --~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 213 (250)
T PRK08063 148 --LENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAKTP------------AGR 213 (250)
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcCCC------------CCC
Confidence 134578999999999999998866 389999999999987643210001112212111110 113
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
+++.+|+|++++.++..+... ..|+.+++.+|..
T Consensus 214 ~~~~~dva~~~~~~~~~~~~~----------~~g~~~~~~gg~~ 247 (250)
T PRK08063 214 MVEPEDVANAVLFLCSPEADM----------IRGQTIIVDGGRS 247 (250)
T ss_pred CcCHHHHHHHHHHHcCchhcC----------ccCCEEEECCCee
Confidence 788999999999988765422 2348899888764
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=193.43 Aligned_cols=232 Identities=17% Similarity=0.124 Sum_probs=161.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|++|||||+|+||++++++|+++|++|++++|+.+.......... ....++.++.+|+.|.+++.++++..
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVAT---DAGGSVIYLVADVTKEDEIADMIAAAAAEFG 77 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999999999997543322211111 12346889999999999888777654
Q ss_pred CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+|||+||....... ..+.+..+++|+.|+.++++++ ++.+.+ +||++||...+...
T Consensus 78 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-~~v~~ss~~~~~~~------------ 144 (255)
T TIGR01963 78 GLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWG-RIINIASAHGLVAS------------ 144 (255)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCe-EEEEEcchhhcCCC------------
Confidence 47999999997653221 2223567889999988777766 455554 89999997665421
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEe----cCCCCcccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYE----APDGASVAR 298 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 298 (424)
.....|+.+|.+.+.+++.++.+. +++++++|||.+++|.... .+............. ........+
T Consensus 145 ~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (255)
T TIGR01963 145 PFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEK------QIADQAKTRGIPEEQVIREVMLPGQPTK 218 (255)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHH------HHHhhhcccCCCchHHHHHHHHccCccc
Confidence 234789999999999999887653 8999999999999984211 111111111110000 001233456
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
++++++|+|++++.++.+.... ..+++|++.++.
T Consensus 219 ~~~~~~d~a~~~~~~~~~~~~~----------~~g~~~~~~~g~ 252 (255)
T TIGR01963 219 RFVTVDEVAETALFLASDAAAG----------ITGQAIVLDGGW 252 (255)
T ss_pred cCcCHHHHHHHHHHHcCccccC----------ccceEEEEcCcc
Confidence 7999999999999999864321 234899998764
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.1e-23 Score=181.51 Aligned_cols=211 Identities=15% Similarity=0.121 Sum_probs=155.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
..++|.++|||||++||.++++.|++.|++|++..|..++++....+.. ...+.++..|++|.+++.++++..
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~-----~~~~~~~~~DVtD~~~~~~~i~~~~~ 77 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIG-----AGAALALALDVTDRAAVEAAIEALPE 77 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhc-----cCceEEEeeccCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999997766554433322 257899999999999977766543
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||...... ..++.+.++++|+.|+.+..++ +.+.+.+ +||++||.+.--
T Consensus 78 ~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G-~IiN~~SiAG~~----------- 145 (246)
T COG4221 78 EFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSG-HIINLGSIAGRY----------- 145 (246)
T ss_pred hhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCc-eEEEeccccccc-----------
Confidence 5899999999875421 2334567999999997666554 5556655 999999965421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC--CCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP--DMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
+....+.|+++|++...+...+.++. ++|++.|.||.+-....+. +.--........ ..
T Consensus 146 -~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y---------------~~ 209 (246)
T COG4221 146 -PYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVY---------------KG 209 (246)
T ss_pred -cCCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHh---------------cc
Confidence 22445889999999999999998775 8999999999985431110 000000111111 12
Q ss_pred cccccHHHHHHHHHHHhhhccc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
...+..+|+|++++.+++.|..
T Consensus 210 ~~~l~p~dIA~~V~~~~~~P~~ 231 (246)
T COG4221 210 GTALTPEDIAEAVLFAATQPQH 231 (246)
T ss_pred CCCCCHHHHHHHHHHHHhCCCc
Confidence 2478899999999999999875
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.5e-23 Score=190.11 Aligned_cols=236 Identities=18% Similarity=0.090 Sum_probs=170.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+++||||+|+||..+++.|+++|++|++++|+.+..+..... ....++.++.+|+.|.+++.+++++.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~-----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADA-----LGDARFVPVACDLTDAASLAAALANAAAERG 76 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-----hcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999965433222111 12346889999999999998888764
Q ss_pred CccEEEEcccccCchhh-c---cChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRYA-M---QNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~-~---~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+|||+||....... . ......+.+|+.++.++++++. +.+. ++||++||...+..
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~~------------- 142 (257)
T PRK07074 77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSR-GAVVNIGSVNGMAA------------- 142 (257)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-eEEEEEcchhhcCC-------------
Confidence 57999999997543211 1 1224567899999988888773 3443 38999999644321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC-CcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD-MAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
.....|+.+|++.+.+++.+++++ |+++++++||.++++..... .....+....... ...++++
T Consensus 143 ~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 210 (257)
T PRK07074 143 LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKW------------YPLQDFA 210 (257)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhc------------CCCCCCC
Confidence 112469999999999999998765 79999999999998753211 0011222222111 1235699
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHH
Q 042406 302 YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEK 355 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~ 355 (424)
+++|++++++.++...... ..|+++++.+|...+.+|+++.+..
T Consensus 211 ~~~d~a~~~~~l~~~~~~~----------~~g~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 211 TPDDVANAVLFLASPAARA----------ITGVCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred CHHHHHHHHHHHcCchhcC----------cCCcEEEeCCCcCcCChhhhhhhcc
Confidence 9999999999999654321 3348999999999999999988754
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-23 Score=189.55 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=159.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-eCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGL-DNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
++++++++||||+|+||.+++++|+++|++|+++ .|+.+.......... .....+.++.+|++|.+++.++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~d~~~i~~~~~~~~ 79 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIE---SNGGKAFLIEADLNSIDGVKKLVEQLK 79 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH---hcCCcEEEEEcCcCCHHHHHHHHHHHH
Confidence 4567899999999999999999999999999876 564332221111111 11346889999999999998888753
Q ss_pred ----------CccEEEEcccccCchhhcc----ChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCC
Q 042406 154 ----------AFTHVMHLAAQAGVRYAMQ----NPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 154 ----------~~d~vi~~Ag~~~~~~~~~----~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~ 218 (424)
++|+||||||........+ ..+..+++|+.++.++++++.+.. ..++||++||..++...
T Consensus 80 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~----- 154 (254)
T PRK12746 80 NELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGF----- 154 (254)
T ss_pred HHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCC-----
Confidence 5799999999754322222 225678899999999999887631 12389999998776521
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
.+...|+.+|.+.+.+++.++.+ .++++++++||.+++|-...-.....+. ...... .
T Consensus 155 -------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~-~~~~~~-----------~ 215 (254)
T PRK12746 155 -------TGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIR-NFATNS-----------S 215 (254)
T ss_pred -------CCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHH-HHHHhc-----------C
Confidence 34578999999999999988875 4799999999999987432100001111 111111 1
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
....+++++|+|+++..++...... ..|++|++.++
T Consensus 216 ~~~~~~~~~dva~~~~~l~~~~~~~----------~~g~~~~i~~~ 251 (254)
T PRK12746 216 VFGRIGQVEDIADAVAFLASSDSRW----------VTGQIIDVSGG 251 (254)
T ss_pred CcCCCCCHHHHHHHHHHHcCcccCC----------cCCCEEEeCCC
Confidence 1234778999999998887754321 23479999876
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-23 Score=186.51 Aligned_cols=210 Identities=18% Similarity=0.222 Sum_probs=160.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
...+++++|||||++||..+|++|+++|++|+++.|+.+++.....+.... ....++++.+|+++++++.++.+..
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~--~~v~v~vi~~DLs~~~~~~~l~~~l~~ 80 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK--TGVEVEVIPADLSDPEALERLEDELKE 80 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh--hCceEEEEECcCCChhHHHHHHHHHHh
Confidence 357889999999999999999999999999999999888776655554433 2457899999999999998887642
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHH----HHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVN----LLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~----ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
.+|++|||||...... .+++.+.++++|+.++.. ++.-+.+.+.+ +||+++|.+.|-..
T Consensus 81 ~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G-~IiNI~S~ag~~p~--------- 150 (265)
T COG0300 81 RGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAG-HIINIGSAAGLIPT--------- 150 (265)
T ss_pred cCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEechhhcCCC---------
Confidence 5799999999865432 222335799999999554 45556666655 99999998887532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
+-.+.|++||+..-.+.+.+..+. |++++.|+||.+..+.... .+..... .....-
T Consensus 151 ---p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~------------~~~~~~~------~~~~~~ 209 (265)
T COG0300 151 ---PYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDA------------KGSDVYL------LSPGEL 209 (265)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccccc------------ccccccc------ccchhh
Confidence 345889999999988888887764 8999999999998763321 1111111 111334
Q ss_pred cccHHHHHHHHHHHhhhcc
Q 042406 300 FTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~ 318 (424)
++..+|+|++.+.++++..
T Consensus 210 ~~~~~~va~~~~~~l~~~k 228 (265)
T COG0300 210 VLSPEDVAEAALKALEKGK 228 (265)
T ss_pred ccCHHHHHHHHHHHHhcCC
Confidence 7889999999999998865
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=192.47 Aligned_cols=233 Identities=14% Similarity=0.097 Sum_probs=160.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+||||++++++|+++|++|++++|+.+............ ...++.++.+|++|.+++.++++..
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEA--AGGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999998653211111111111 1346789999999999998888753
Q ss_pred ---CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTDQPAS 229 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~ 229 (424)
++|+||||||.... ...++...+++|+.++.++++++.+... ..++|++||........ .+ .....+
T Consensus 81 ~~~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~----~~---~~~~~~ 151 (248)
T PRK07806 81 EFGGLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPT----VK---TMPEYE 151 (248)
T ss_pred hCCCCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCcc----cc---CCcccc
Confidence 57999999986432 2334567889999999999999986532 23899999954421100 00 112257
Q ss_pred hHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHH
Q 042406 230 LYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDI 306 (424)
Q Consensus 230 ~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 306 (424)
.|+.||+++|.+++.++.+ .++++++++|+.+-++... .+... ..+-.. . ........+++++|+
T Consensus 152 ~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~------~~~~~---~~~~~~-~--~~~~~~~~~~~~~dv 219 (248)
T PRK07806 152 PVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA------TLLNR---LNPGAI-E--ARREAAGKLYTVSEF 219 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh------hhhcc---CCHHHH-H--HHHhhhcccCCHHHH
Confidence 8999999999999999765 3899999999988765211 01100 000000 0 000012359999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 307 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
|++++.+++... ..|++|++++++.
T Consensus 220 a~~~~~l~~~~~------------~~g~~~~i~~~~~ 244 (248)
T PRK07806 220 AAEVARAVTAPV------------PSGHIEYVGGADY 244 (248)
T ss_pred HHHHHHHhhccc------------cCccEEEecCccc
Confidence 999999998543 2348999998764
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-23 Score=193.27 Aligned_cols=231 Identities=18% Similarity=0.192 Sum_probs=161.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
.+|++|||||+|+||+++++.|+++|++|++++|+.+........... .....++.++.+|++|++++++ +++.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQ-LNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 467899999999999999999999999999999976443332221111 1113578999999999999887 5543
Q ss_pred -CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcc-cCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSV-YGVNKKVPFSEKDR 223 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~v-yg~~~~~~~~e~~~ 223 (424)
++|+||||||....... .++.+..+++|+.++.++++++ ++.+.+ +||++||... ++.
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vsS~~~~~~~----------- 147 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSG-KIINISSISGRVGF----------- 147 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEECcccccCCC-----------
Confidence 57999999997653221 2234567899999988887775 555544 8999999644 332
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHH---HhCCcEEEEEeccccCCCCCCC-----------CcHHHHHHHHHcCCceeEEe
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNH---IYGLSITGLRFFTVYGPWGRPD-----------MAYFFFTRDIIRGKRITVYE 289 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~---~~~i~~~~vrp~~v~G~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 289 (424)
.+...|+.+|.+.+.+++.++. ..|++++++|||.++++..... ......+..+....
T Consensus 148 --~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 219 (280)
T PRK06914 148 --PGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHI------ 219 (280)
T ss_pred --CCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHH------
Confidence 3457899999999999999874 3499999999999988732211 00111111111100
Q ss_pred cCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHH
Q 042406 290 APDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVS 347 (424)
Q Consensus 290 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~ 347 (424)
......+++++|+|++++.+++++... ..|+++++..+++.
T Consensus 220 ----~~~~~~~~~~~dva~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 260 (280)
T PRK06914 220 ----NSGSDTFGNPIDVANLIVEIAESKRPK-------------LRYPIGKGVKLMIL 260 (280)
T ss_pred ----hhhhhccCCHHHHHHHHHHHHcCCCCC-------------cccccCCchHHHHH
Confidence 011234788999999999999876531 46888876655544
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-23 Score=190.37 Aligned_cols=231 Identities=16% Similarity=0.138 Sum_probs=159.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-HHHHHHHh-hccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-KSLLDKIF-NVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~v~~~~-~~~~ 154 (424)
..+|+|+||||+|+||+.++++|+++|++|+++.|+.++... . .....+++++++|++| .+.+.+.+ .+
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~----~---~~~~~~~~~~~~Dl~d~~~~l~~~~~~~-- 85 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKT----S---LPQDPSLQIVRADVTEGSDKLVEAIGDD-- 85 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHH----h---cccCCceEEEEeeCCCCHHHHHHHhhcC--
Confidence 457899999999999999999999999999999996542211 0 0112468999999998 46666666 44
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
+|+|||++|.... .++...+.+|..++.++++++++.+.+ +||++||.++||.....+..+......+...|..+
T Consensus 86 ~d~vi~~~g~~~~----~~~~~~~~~n~~~~~~ll~a~~~~~~~-~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
T PLN00141 86 SDAVICATGFRRS----FDPFAPWKVDNFGTVNLVEACRKAGVT-RFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVA 160 (251)
T ss_pred CCEEEECCCCCcC----CCCCCceeeehHHHHHHHHHHHHcCCC-EEEEEccccccCCCcccccCcchhHHHHHHHHHHH
Confidence 5999999986321 122334578999999999999998875 99999999999854332222111110112234456
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHh
Q 042406 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGL 314 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 314 (424)
|..+|.+++. .|+++++|||+.++++.... .+.+. ........+|+.+|+|++++.++
T Consensus 161 k~~~e~~l~~----~gi~~~iirpg~~~~~~~~~---------------~~~~~---~~~~~~~~~i~~~dvA~~~~~~~ 218 (251)
T PLN00141 161 KLQAEKYIRK----SGINYTIVRPGGLTNDPPTG---------------NIVME---PEDTLYEGSISRDQVAEVAVEAL 218 (251)
T ss_pred HHHHHHHHHh----cCCcEEEEECCCccCCCCCc---------------eEEEC---CCCccccCcccHHHHHHHHHHHh
Confidence 7777766553 48999999999999863211 11111 01112235899999999999999
Q ss_pred hhccccCCCCCCCCCCCCcceEEcCC---CCcccHHHHHHHHHH
Q 042406 315 DTAKKSTGSGGKKKGPAEFRIFNLGN---TTPVPVSRLVSLLEK 355 (424)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~el~~~i~~ 355 (424)
..+... ++++.+.+ +...++++++..+.+
T Consensus 219 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 219 LCPESS------------YKVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred cChhhc------------CcEEEEecCCCCCchhHHHHHHHhhc
Confidence 876532 25677775 334788998887764
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=189.16 Aligned_cols=237 Identities=13% Similarity=0.086 Sum_probs=161.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+|+||||+|+||.++++.|+++|++|++++|+............. ......+.++.+|++|.+++.++++++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINA-EYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-hcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999975443332222111 111246899999999999998888764
Q ss_pred CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCc-ccCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSS-VYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~-vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||...... ..++.+..+++|+.++.++++++.+ .+...++|++||.. .++.
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~------------ 148 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS------------ 148 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC------------
Confidence 6899999999754322 1223456889999998877776644 34234899998854 3332
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHc--CCceeEEecCCCCccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIR--GKRITVYEAPDGASVARD 299 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 299 (424)
.....|+.||++.+.+++.++.+ .|++++++|||.++++..... .++.+...... ......+ .+......
T Consensus 149 -~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 223 (259)
T PRK12384 149 -KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQS-LLPQYAKKLGIKPDEVEQYY---IDKVPLKR 223 (259)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhh-hhHHHHHhcCCChHHHHHHH---HHhCcccC
Confidence 23468999999999999988754 589999999999887643221 11111111000 0000000 11223456
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
+++++|++.+++.++...... ..|++|++.+|+.
T Consensus 224 ~~~~~dv~~~~~~l~~~~~~~----------~~G~~~~v~~g~~ 257 (259)
T PRK12384 224 GCDYQDVLNMLLFYASPKASY----------CTGQSINVTGGQV 257 (259)
T ss_pred CCCHHHHHHHHHHHcCccccc----------ccCceEEEcCCEE
Confidence 889999999999887654321 2348999998763
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=185.97 Aligned_cols=226 Identities=14% Similarity=0.162 Sum_probs=161.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+.+|+++||||+|+||+++++.|+++|++|++++|...+..........+. .....+.++.+|++|.+++.++++..
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999998875433222222211111 12346889999999999998888642
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHH-----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCK-----SSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~-----~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||..... ...++.+..+++|+.++.++++++. +.+. ++||++||...+...
T Consensus 84 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~iv~~sS~~~~~~~-------- 154 (249)
T PRK12827 84 EFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRG-GRIVNIASVAGVRGN-------- 154 (249)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCC-eEEEEECCchhcCCC--------
Confidence 579999999986521 1223345689999999999999887 3443 389999997665421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.+...|+.+|++.+.+++.++.+. +++++++|||.++++........ ..+....+. .
T Consensus 155 ----~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~----~~~~~~~~~------------~ 214 (249)
T PRK12827 155 ----RGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPT----EHLLNPVPV------------Q 214 (249)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchH----HHHHhhCCC------------c
Confidence 345789999999999999987663 89999999999999854432111 122222111 1
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
.+.+.+|++++++.++...... ..|+.+++.+|
T Consensus 215 ~~~~~~~va~~~~~l~~~~~~~----------~~g~~~~~~~g 247 (249)
T PRK12827 215 RLGEPDEVAALVAFLVSDAASY----------VTGQVIPVDGG 247 (249)
T ss_pred CCcCHHHHHHHHHHHcCcccCC----------ccCcEEEeCCC
Confidence 1457899999999888654321 33478888765
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=189.02 Aligned_cols=229 Identities=12% Similarity=0.109 Sum_probs=161.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+++||||+|+||++++++|+++|++|++++|+....+........ ...++.++.+|++|.+++.++++.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDD---LGRRALAVPTDITDEDQCANLVALALER 79 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH---hCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999976433222221111 1346889999999999998888764
Q ss_pred --CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCKSSD--PQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~~~--~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||.... ....++.+..+++|+.++..+++++.... ...+||++||...+..
T Consensus 80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~------------ 147 (258)
T PRK07890 80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHS------------ 147 (258)
T ss_pred cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccC------------
Confidence 68999999997432 11223446789999999999999886531 1238999999766432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC---------CcHHHHHHHHHcCCceeEEecCC
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD---------MAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
..+...|+.+|.+.+.+++.++.++ ++++++++||.+++|..... .....+...+...
T Consensus 148 ~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 217 (258)
T PRK07890 148 QPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN---------- 217 (258)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc----------
Confidence 1345789999999999999998664 89999999999999843210 0001111111111
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.....+.+++|++++++.++...... ..|+++.+.++.
T Consensus 218 --~~~~~~~~~~dva~a~~~l~~~~~~~----------~~G~~i~~~gg~ 255 (258)
T PRK07890 218 --SDLKRLPTDDEVASAVLFLASDLARA----------ITGQTLDVNCGE 255 (258)
T ss_pred --CCccccCCHHHHHHHHHHHcCHhhhC----------ccCcEEEeCCcc
Confidence 11223778999999999888754321 233677766654
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=191.31 Aligned_cols=231 Identities=11% Similarity=0.032 Sum_probs=162.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchh-hhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYE-TSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
++++|+++||||+|+||++++++|+++|++|++.+|+.+... +....... ....++.++.+|++|.+++.++++.+
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 123 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIE--ECGRKAVLLPGDLSDEKFARSLVHEAH 123 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHH--HcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999887543211 11111111 12346788999999999998887754
Q ss_pred ----CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|++|||||.... ....++.+..+++|+.++.++++++.... ...+||++||...+...
T Consensus 124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~---------- 193 (294)
T PRK07985 124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPS---------- 193 (294)
T ss_pred HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCC----------
Confidence 57999999996421 12234456789999999999998886531 12489999998876531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.....|+.+|++.+.+++.++.+ .|+++++|+||.|++|..............+....+ ...+
T Consensus 194 --~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------~~r~ 259 (294)
T PRK07985 194 --PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTP------------MKRA 259 (294)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhccCC------------CCCC
Confidence 23468999999999999999876 489999999999999853211111111222221111 1125
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+|+|.+++.++...... ..|.++.+.+|.
T Consensus 260 ~~pedva~~~~fL~s~~~~~----------itG~~i~vdgG~ 291 (294)
T PRK07985 260 GQPAELAPVYVYLASQESSY----------VTAEVHGVCGGE 291 (294)
T ss_pred CCHHHHHHHHHhhhChhcCC----------ccccEEeeCCCe
Confidence 67899999999988765422 344788887764
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=186.61 Aligned_cols=227 Identities=13% Similarity=0.049 Sum_probs=161.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+++||||+|+||.+++++|+++|++|++++|+.+.......... ...++.++.+|++|.+++.+++++.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEIL----AGGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh----cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999997654332222111 1346889999999999999988765
Q ss_pred --CccEEEEcccccCchh-----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY-----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~-----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+|||+||...... ..++.+..+++|+.++.++++.+.+ .+. ++||++||...+...
T Consensus 79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~--------- 148 (251)
T PRK07231 79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGG-GAIVNVASTAGLRPR--------- 148 (251)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEEcChhhcCCC---------
Confidence 6899999999743221 2233467899999998777666543 444 489999998776531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCc--HHHHHHHHHcCCceeEEecCCCCccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMA--YFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.+...|+.+|.+.+.+++.++.++ ++++++++||.+.++....... .......+... ...
T Consensus 149 ---~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 213 (251)
T PRK07231 149 ---PGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLAT------------IPL 213 (251)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcC------------CCC
Confidence 345789999999999999988764 8999999999997764221000 00111111111 112
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+++++|+|.+++.++...... ..|+.+.+.++.
T Consensus 214 ~~~~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~gg~ 248 (251)
T PRK07231 214 GRLGTPEDIANAALFLASDEASW----------ITGVTLVVDGGR 248 (251)
T ss_pred CCCcCHHHHHHHHHHHhCccccC----------CCCCeEEECCCc
Confidence 34789999999999998655321 223677777654
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=229.61 Aligned_cols=262 Identities=18% Similarity=0.189 Sum_probs=183.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC----CeEEEEeCCCCchhhhHHHHHhh--------hhccCCeEEEEccCCC---
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRG----DGVLGLDNFNNYYETSLKKARKG--------LLERAGVFVIDADIND--- 142 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~v~~~~~Dl~d--- 142 (424)
..++|+||||+||||.+++++|++++ ++|+++.|..+..... ...... .....++.++.+|+++
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~-~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~l 1048 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGL-ERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKF 1048 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHH-HHHHHHHHHhCCCchhhhcceEEEeccCCCccC
Confidence 46899999999999999999999987 7899999975432221 111110 0112378999999974
Q ss_pred ---HHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-----
Q 042406 143 ---KSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNK----- 214 (424)
Q Consensus 143 ---~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~----- 214 (424)
.+...++..++ |+|||||+.... ....+.....|+.|+.+++++|.+.+.+ +|+|+||.++|+...
T Consensus 1049 gl~~~~~~~l~~~~--d~iiH~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~vSS~~v~~~~~~~~~~ 1122 (1389)
T TIGR03443 1049 GLSDEKWSDLTNEV--DVIIHNGALVHW---VYPYSKLRDANVIGTINVLNLCAEGKAK-QFSFVSSTSALDTEYYVNLS 1122 (1389)
T ss_pred CcCHHHHHHHHhcC--CEEEECCcEecC---ccCHHHHHHhHHHHHHHHHHHHHhCCCc-eEEEEeCeeecCcccccchh
Confidence 45566666655 999999998652 1233455668999999999999988775 999999999996421
Q ss_pred -------CCCCCCCCCC----CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCC
Q 042406 215 -------KVPFSEKDRT----DQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGK 283 (424)
Q Consensus 215 -------~~~~~e~~~~----~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~ 283 (424)
...+.|+++. ..+.+.|+.||+++|.++..+.+. |++++++|||.|||+..........++..++.+.
T Consensus 1123 ~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~ 1201 (1389)
T TIGR03443 1123 DELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKR-GLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGC 1201 (1389)
T ss_pred hhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhC-CCCEEEECCCccccCCCcCCCCchhHHHHHHHHH
Confidence 1123333221 123467999999999999987664 9999999999999986543221112222222211
Q ss_pred -ceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccc
Q 042406 284 -RITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKA 361 (424)
Q Consensus 284 -~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~ 361 (424)
.+..+ ......++|++|+|+|++++.++..+... ..+.+||++++..+++.++++.+.+. |.+.
T Consensus 1202 ~~~~~~---p~~~~~~~~~~Vddva~ai~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~l~~~-g~~~ 1266 (1389)
T TIGR03443 1202 IQLGLI---PNINNTVNMVPVDHVARVVVAAALNPPKE----------SELAVAHVTGHPRIRFNDFLGTLKTY-GYDV 1266 (1389)
T ss_pred HHhCCc---CCCCCccccccHHHHHHHHHHHHhCCccc----------CCCCEEEeCCCCCCcHHHHHHHHHHh-CCCC
Confidence 12222 23455689999999999999998754311 12268999999889999999999764 5443
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-22 Score=186.75 Aligned_cols=226 Identities=15% Similarity=0.141 Sum_probs=160.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+++||||+|+||++|+++|+++|++|++++|+.+.......... ...++.++.+|++|.+++.++++.+
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA----AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh----cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999997644332222111 2356899999999999999988764
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCccc-CCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVY-GVNKKVPFSEKD 222 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vy-g~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.++.++.+++ ++.+.+ +||++||.+.+ +.
T Consensus 79 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~ii~~sS~~~~~~~---------- 147 (252)
T PRK06138 79 WGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGG-SIVNTASQLALAGG---------- 147 (252)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCe-EEEEECChhhccCC----------
Confidence 6899999999754321 12234567999999987666554 455544 89999997553 32
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC---cHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM---AYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.....|+.+|.+.+.+++.++.++ |++++++|||.++++...... ..+..+...... ...
T Consensus 148 ---~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 213 (252)
T PRK06138 148 ---RGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRA-----------RHP 213 (252)
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHh-----------cCC
Confidence 345789999999999999998765 899999999999988432100 000111111110 011
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
...+++++|++++++.++..+... ..|..+.+.++
T Consensus 214 ~~~~~~~~d~a~~~~~l~~~~~~~----------~~g~~~~~~~g 248 (252)
T PRK06138 214 MNRFGTAEEVAQAALFLASDESSF----------ATGTTLVVDGG 248 (252)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcC----------ccCCEEEECCC
Confidence 123788999999999998776532 33467777655
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=186.54 Aligned_cols=231 Identities=13% Similarity=0.049 Sum_probs=161.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++.+++|+||||+|+||++++++|+++|++|++..|.............. ....++.++.+|+++.+++.+++++.
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVK--ENGGEGIGVLADVSTREGCETLAKATID 80 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHH--HcCCeeEEEEeccCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999999998887654321111111111 11235778999999999988887754
Q ss_pred ---CccEEEEcccccCchhhcc----ChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYAMQ----NPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~~~----~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||......... ..+..+++|+.++.++++++.+.- ..++||++||...+.. .
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~------------~ 148 (252)
T PRK06077 81 RYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRP------------A 148 (252)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCC------------C
Confidence 6799999999744322111 124678999999998888876541 1248999999887652 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCC-cHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDM-AYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.+.+.|+.+|++.|.+++.+++++ ++++.+++||.+.++....-. ............ ......+++
T Consensus 149 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 217 (252)
T PRK06077 149 YGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEK-----------FTLMGKILD 217 (252)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHHHh-----------cCcCCCCCC
Confidence 456899999999999999998876 799999999999887432100 000000011100 011235899
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
++|+|++++.++.... ..+++|++.+|..
T Consensus 218 ~~dva~~~~~~~~~~~------------~~g~~~~i~~g~~ 246 (252)
T PRK06077 218 PEEVAEFVAAILKIES------------ITGQVFVLDSGES 246 (252)
T ss_pred HHHHHHHHHHHhCccc------------cCCCeEEecCCee
Confidence 9999999999997442 2348999998753
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=185.98 Aligned_cols=230 Identities=12% Similarity=0.098 Sum_probs=159.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||.+++++|+++|++|++++|+.+..+........ ...++.++.+|++|.++++++++++
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRA---EGGEAVALAGDVRDEAYAKALVALAVE 79 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999976544333222211 1246889999999999998888754
Q ss_pred ---CccEEEEcccccCc--h---hhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV--R---YAMQNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~--~---~~~~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||.... . ...++.+..+++|+.++.+++++ +++.+.+ +||++||...+..
T Consensus 80 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~-~iv~~sS~~~~~~--------- 149 (254)
T PRK07478 80 RFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGG-SLIFTSTFVGHTA--------- 149 (254)
T ss_pred hcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEEechHhhcc---------
Confidence 68999999997532 1 12233467899999987766554 4444443 8999999766531
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.......|+.||++.+.+++.++.++ |+++++|+||.+-.+..............+....+ ..
T Consensus 150 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------~~ 215 (254)
T PRK07478 150 --GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLHA------------LK 215 (254)
T ss_pred --CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcCC------------CC
Confidence 11345789999999999999998775 79999999999987632210000111111111111 11
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+...+|+|++++.++...... ..|+++.+.+|.
T Consensus 216 ~~~~~~~va~~~~~l~s~~~~~----------~~G~~~~~dgg~ 249 (254)
T PRK07478 216 RMAQPEEIAQAALFLASDAASF----------VTGTALLVDGGV 249 (254)
T ss_pred CCcCHHHHHHHHHHHcCchhcC----------CCCCeEEeCCch
Confidence 2567899999999988654322 334777776653
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-22 Score=187.89 Aligned_cols=236 Identities=19% Similarity=0.137 Sum_probs=159.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...... . .....++.++.+|++|++++.++++.+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~----~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATA----A-RLPGAKVTATVADVADPAQVERVFDTAVE 82 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----H-HHhcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999654322111 1 111226789999999999998888754
Q ss_pred ---CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+|||+||.... ....++.+..+++|+.++.++++++. ..+.+++|+++||.+....
T Consensus 83 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~--------- 153 (264)
T PRK12829 83 RFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLG--------- 153 (264)
T ss_pred HhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccC---------
Confidence 67999999997622 11223446789999999998888763 3333247888887543211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEe-cCCCCccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYE-APDGASVA 297 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 297 (424)
..+...|+.+|.+.|.+++.++.+. +++++++|||.++||..... ....... .+.....+. ........
T Consensus 154 ---~~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~ 226 (264)
T PRK12829 154 ---YPGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRV--IEARAQQ--LGIGLDEMEQEYLEKISL 226 (264)
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHH--hhhhhhc--cCCChhHHHHHHHhcCCC
Confidence 1334679999999999999988664 89999999999999853210 0000000 000000000 00000012
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+++++|+|+++..++...... .+++.|++.+|.
T Consensus 227 ~~~~~~~d~a~~~~~l~~~~~~~----------~~g~~~~i~~g~ 261 (264)
T PRK12829 227 GRMVEPEDIAATALFLASPAARY----------ITGQAISVDGNV 261 (264)
T ss_pred CCCCCHHHHHHHHHHHcCccccC----------ccCcEEEeCCCc
Confidence 24899999999998887543211 234789999875
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-22 Score=186.68 Aligned_cols=215 Identities=14% Similarity=0.109 Sum_probs=153.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+.+|+++||||+|+||++++++|+++|++|++++|+.+.......... ....++.++.+|++|.+++.++++.+
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIR---ADGGEAVAFPLDVTDPDSVKSFVAQAEEA 84 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 566899999999999999999999999999999986543222111111 11246788999999999999888754
Q ss_pred --CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||....... .++.+..+++|+.++.++++++.+ .+. .+||++||...+...
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~-g~iv~isS~~~~~~~---------- 153 (274)
T PRK07775 85 LGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRR-GDLIFVGSDVALRQR---------- 153 (274)
T ss_pred cCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-ceEEEECChHhcCCC----------
Confidence 57999999997543221 223356789999999998887643 333 389999998776531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC--CCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP--DMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.+...|+.+|++.|.+++.++++. |++++++|||.+.++.... ......++..... + ......
T Consensus 154 --~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~------~----~~~~~~ 221 (274)
T PRK07775 154 --PHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAK------W----GQARHD 221 (274)
T ss_pred --CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHH------h----cccccc
Confidence 235689999999999999998765 8999999999886653221 1111112221111 0 111235
Q ss_pred ccccHHHHHHHHHHHhhhc
Q 042406 299 DFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~ 317 (424)
.+++++|+|++++.+++.+
T Consensus 222 ~~~~~~dva~a~~~~~~~~ 240 (274)
T PRK07775 222 YFLRASDLARAITFVAETP 240 (274)
T ss_pred cccCHHHHHHHHHHHhcCC
Confidence 6999999999999998764
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=190.53 Aligned_cols=240 Identities=13% Similarity=0.090 Sum_probs=162.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++|+++||||+|+||++++++|+++|++|++++|+.+....... ......++.++++|++|.+++.++++.+
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 89 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCD----SLGGEPNVCFFHCDVTVEDDVSRAVDFTV 89 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----HhcCCCceEEEEeecCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999986543222111 1112346889999999999999888754
Q ss_pred ----CccEEEEcccccCch------hhccChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcc-cCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR------YAMQNPNSYVESNIAGFVNLLETCKSSD---PQPAIVWASSSSV-YGVNKKVPFS 219 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~ll~a~~~~~---~~~~~v~~SS~~v-yg~~~~~~~~ 219 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.... ...++|++||... ++.
T Consensus 90 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------- 162 (280)
T PLN02253 90 DKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGG------- 162 (280)
T ss_pred HHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccC-------
Confidence 679999999975321 1123446799999999999888775421 1237888887544 332
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC---CC-cHHHHHHHHHcCCceeEEecCC
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP---DM-AYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
.....|+.+|++.|.+++.++.++ |+++++++||.+.++.... +. .....+..+.. ... .
T Consensus 163 ------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~-----~~~--~ 229 (280)
T PLN02253 163 ------LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRA-----FAG--K 229 (280)
T ss_pred ------CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHH-----Hhh--c
Confidence 223579999999999999998775 8999999999998763211 10 00011111000 000 0
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHH
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSR 348 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e 348 (424)
........++++|+|.+++.++...... ..|+.+++.+|...+..+
T Consensus 230 ~~~l~~~~~~~~dva~~~~~l~s~~~~~----------i~G~~i~vdgG~~~~~~~ 275 (280)
T PLN02253 230 NANLKGVELTVDDVANAVLFLASDEARY----------ISGLNLMIDGGFTCTNHS 275 (280)
T ss_pred CCCCcCCCCCHHHHHHHHHhhcCccccc----------ccCcEEEECCchhhccch
Confidence 0000112478999999999988654321 344789998876544433
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-22 Score=186.64 Aligned_cols=231 Identities=13% Similarity=0.124 Sum_probs=166.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++|++|||||+|+||.+++++|+++|++|++++|+.+.......... . ....++.++.+|++|.+++.++++++
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~-~-~~~~~~~~~~~Dl~~~~~~~~~~~~i~ 119 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRV-E-KEGVKCLLIPGDVSDEAFCKDAVEETV 119 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH-H-hcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999997543222111111 1 11346889999999999998888764
Q ss_pred ----CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||..... ...++....+++|+.++.++++++.... ...+||++||...|...
T Consensus 120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~---------- 189 (290)
T PRK06701 120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGN---------- 189 (290)
T ss_pred HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCC----------
Confidence 689999999975321 1122335689999999999999886531 12389999998877532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.....|+.+|.+.+.+++.++.++ |+++++|+||.++++...... .......+.. ......+
T Consensus 190 --~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~-~~~~~~~~~~------------~~~~~~~ 254 (290)
T PRK06701 190 --ETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDF-DEEKVSQFGS------------NTPMQRP 254 (290)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCccccccc-CHHHHHHHHh------------cCCcCCC
Confidence 234679999999999999999875 899999999999987432211 1111121211 1112347
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+++|+|++++.++...... ..|.++++.++.
T Consensus 255 ~~~~dva~~~~~ll~~~~~~----------~~G~~i~idgg~ 286 (290)
T PRK06701 255 GQPEELAPAYVFLASPDSSY----------ITGQMLHVNGGV 286 (290)
T ss_pred cCHHHHHHHHHHHcCcccCC----------ccCcEEEeCCCc
Confidence 88999999999998875421 234788887764
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=188.78 Aligned_cols=261 Identities=19% Similarity=0.208 Sum_probs=174.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHh--------hhhccCCeEEEEccCC------CHH
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARK--------GLLERAGVFVIDADIN------DKS 144 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~v~~~~~Dl~------d~~ 144 (424)
++|++||||||+|.+|+++|+.+- .+|+|+.|-.+.... ..+..+ .+....+|+++.+|+. +..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a-~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~ 79 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAA-LARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSER 79 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHH-HHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHH
Confidence 579999999999999999999985 599999997653222 111111 2245678999999998 456
Q ss_pred HHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCC----CCC
Q 042406 145 LLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVP----FSE 220 (424)
Q Consensus 145 ~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~----~~e 220 (424)
...++.+.+ |.|||||+.++. ....+.....|+.||..+++.|.....+ .+.|+||.+|+....... +++
T Consensus 80 ~~~~La~~v--D~I~H~gA~Vn~---v~pYs~L~~~NVlGT~evlrLa~~gk~K-p~~yVSsisv~~~~~~~~~~~~~~~ 153 (382)
T COG3320 80 TWQELAENV--DLIIHNAALVNH---VFPYSELRGANVLGTAEVLRLAATGKPK-PLHYVSSISVGETEYYSNFTVDFDE 153 (382)
T ss_pred HHHHHhhhc--ceEEecchhhcc---cCcHHHhcCcchHhHHHHHHHHhcCCCc-eeEEEeeeeeccccccCCCcccccc
Confidence 788888877 999999998662 3556788899999999999999987764 799999999986543222 221
Q ss_pred CCC----CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----CcHHHHHHHHHcCCceeEEecCC
Q 042406 221 KDR----TDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD----MAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 221 ~~~----~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
.++ ...+.+.|++||+++|.++++..+. |++++|+|||+|.|+..... -++..++..+++-...+
T Consensus 154 ~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P------ 226 (382)
T COG3320 154 ISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAP------ 226 (382)
T ss_pred ccccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCC------
Confidence 121 1234588999999999999999887 99999999999999865321 12334444444433322
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEE-cCCCCcccHHHHHHHHHH
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFN-LGNTTPVPVSRLVSLLEK 355 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~el~~~i~~ 355 (424)
+.....+.+.++++++++........+....-+. +++.....|+ ..-|..+...++.+.+.+
T Consensus 227 ~~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~-~~~~~f~~~~~~~~~~~i~l~~~~~w~~~ 289 (382)
T COG3320 227 DSEYSLDMLPVDHVARAVVAPSVQVAEAIAALGA-HSDIRFNQLHMLTHPDEIGLDEYVDWLIS 289 (382)
T ss_pred CcccchhhCccceeeEEeehhhhhHHHHHHHhcc-CccchhhheecccCCCccchhHHHHhHhh
Confidence 2233344444444444443333222100000000 1112223444 222677999999998887
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=185.12 Aligned_cols=228 Identities=18% Similarity=0.088 Sum_probs=159.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
..+.++|+++||||+|+||+++++.|+++|++|++++|+.+...... .. ...++.++++|++|.+++.+++++.
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~-----~~-~~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVA-----KA-LGENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-----HH-cCCceEEEEccCCCHHHHHHHHHHH
Confidence 34578899999999999999999999999999999998643322211 11 1246889999999999987776654
Q ss_pred -----CccEEEEcccccCch------hhccChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVR------YAMQNPNSYVESNIAGFVNLLETCKSS--DPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~ll~a~~~~--~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||..... ...++.+..+++|+.++.++++++.+. ....+||++||...+...
T Consensus 79 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~------- 151 (255)
T PRK05717 79 LGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSE------- 151 (255)
T ss_pred HHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCC-------
Confidence 589999999975421 122334678999999999999998642 112389999987654321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.....|+.+|++.+.+++.++.++ ++++++++||.+.++........ .+.. ..... .+ ..
T Consensus 152 -----~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~~-~~~~-~~~~~-~~----------~~ 213 (255)
T PRK05717 152 -----PDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRRAE-PLSE-ADHAQ-HP----------AG 213 (255)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccccch-HHHH-HHhhc-CC----------CC
Confidence 234679999999999999998876 59999999999999743221100 1111 11110 00 11
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+.+++|+|.+++.++...... ..|+.+.+.++.
T Consensus 214 ~~~~~~~va~~~~~l~~~~~~~----------~~g~~~~~~gg~ 247 (255)
T PRK05717 214 RVGTVEDVAAMVAWLLSRQAGF----------VTGQEFVVDGGM 247 (255)
T ss_pred CCcCHHHHHHHHHHHcCchhcC----------ccCcEEEECCCc
Confidence 3678999999999887654321 234677776653
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-22 Score=183.60 Aligned_cols=226 Identities=15% Similarity=0.109 Sum_probs=159.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++++++||||+|+||.+++++|+++|++|+++.+......+....... ....++.++.+|++|.+++.++++++
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELG--KEGHDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999998876543221111111110 11246899999999999999888874
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||...... ...+.+..+++|+.++.++++++.. .+. ++||++||...+..
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~----------- 149 (247)
T PRK12935 82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEE-GRIISISSIIGQAG----------- 149 (247)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEcchhhcCC-----------
Confidence 5799999999854321 1234567899999999999888764 233 38999999654321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
..+...|+.+|.+.+.+++.+..++ ++++++++||.+.++.... ...........+ ...+.+
T Consensus 150 -~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~--~~~~~~~~~~~~------------~~~~~~ 214 (247)
T PRK12935 150 -GFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAE--VPEEVRQKIVAK------------IPKKRF 214 (247)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhh--ccHHHHHHHHHh------------CCCCCC
Confidence 1345789999999999999988764 8999999999998763221 011111111111 123458
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+++|++++++.+++.... ..|+.||+.++.
T Consensus 215 ~~~edva~~~~~~~~~~~~-----------~~g~~~~i~~g~ 245 (247)
T PRK12935 215 GQADEIAKGVVYLCRDGAY-----------ITGQQLNINGGL 245 (247)
T ss_pred cCHHHHHHHHHHHcCcccC-----------ccCCEEEeCCCc
Confidence 9999999999998864321 233899998863
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=184.46 Aligned_cols=218 Identities=15% Similarity=0.110 Sum_probs=161.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|++|||||+|+||++++++|+++|++|++++|+.+........ ....++.++.+|+.|.+++.++++++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-----~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPG-----VPADALRIGGIDLVDPQAARRAVDEVNR 78 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHH-----HhhcCceEEEeecCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999976433222211 12245778899999999998888754
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+|||+||...... ..++.+..+.+|+.++.++++++. +.+. ++||++||...++..
T Consensus 79 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~~~--------- 148 (239)
T PRK12828 79 QFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGG-GRIVNIGAGAALKAG--------- 148 (239)
T ss_pred HhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCC-CEEEEECchHhccCC---------
Confidence 5799999999753211 122235678899999998888764 3444 499999998877532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.+...|+.+|.+.+.+++.++.. .+++++++|||.++++...... + ......
T Consensus 149 ---~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~-------------~---------~~~~~~ 203 (239)
T PRK12828 149 ---PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADM-------------P---------DADFSR 203 (239)
T ss_pred ---CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcC-------------C---------chhhhc
Confidence 34578999999999999888764 4899999999999987321100 0 011223
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
+++++|+|++++.++...... ..|+.+++.++..
T Consensus 204 ~~~~~dva~~~~~~l~~~~~~----------~~g~~~~~~g~~~ 237 (239)
T PRK12828 204 WVTPEQIAAVIAFLLSDEAQA----------ITGASIPVDGGVA 237 (239)
T ss_pred CCCHHHHHHHHHHHhCccccc----------ccceEEEecCCEe
Confidence 899999999999988764321 2348898888753
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-23 Score=178.05 Aligned_cols=305 Identities=18% Similarity=0.196 Sum_probs=226.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-CC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKR-GD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~-g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
+--+||||||-|.+|..++..|..+ |- .|++-|.-+. .. .....-.|+..|+.|...++++.-+.++
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KP---------p~--~V~~~GPyIy~DILD~K~L~eIVVn~RI 111 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKP---------PA--NVTDVGPYIYLDILDQKSLEEIVVNKRI 111 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCC---------ch--hhcccCCchhhhhhccccHHHhhccccc
Confidence 3447999999999999999988876 64 5655554221 11 1122345888999999999999888899
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATK 235 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK 235 (424)
|.+||..+..+. ..+.+.....++|+.|..|+++.+++++. ++..-|+.+.||...+..-+.+-....|.+.||.||
T Consensus 112 dWL~HfSALLSA-vGE~NVpLA~~VNI~GvHNil~vAa~~kL--~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVSK 188 (366)
T KOG2774|consen 112 DWLVHFSALLSA-VGETNVPLALQVNIRGVHNILQVAAKHKL--KVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVSK 188 (366)
T ss_pred ceeeeHHHHHHH-hcccCCceeeeecchhhhHHHHHHHHcCe--eEeecccccccCCCCCCCCCCCeeeecCceeechhH
Confidence 999998876432 23566677889999999999999999987 688889999999765433333322346789999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCC---CC-CCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHH
Q 042406 236 KAGEAIAHAYNHIYGLSITGLRFFTVYGP---WG-RPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311 (424)
Q Consensus 236 ~~~e~~~~~~~~~~~i~~~~vrp~~v~G~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 311 (424)
..+|.+-+.+..+.|+.+-++|.+.++.. ++ ..+.....|..+..+|+.... -.++.+....|.+||-++++
T Consensus 189 VHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~tCy----lrpdtrlpmmy~~dc~~~~~ 264 (366)
T KOG2774|consen 189 VHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKHTCY----LRPDTRLPMMYDTDCMASVI 264 (366)
T ss_pred HHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCcccc----cCCCccCceeehHHHHHHHH
Confidence 99999999999999999999999888763 32 335556666666667765443 36788889999999999999
Q ss_pred HHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCC--CCCcccccCChHHHHhHcC
Q 042406 312 AGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR--NGDVQFTHANISLAQRELG 389 (424)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~--~~~~~~~~~d~s~~~~~LG 389 (424)
.++..+.++ -..++||+++ -.+|..|+++.+.+.+..- .+.+.+..+ ..+.....+|+|.+|++.-
T Consensus 265 ~~~~a~~~~----------lkrr~ynvt~-~sftpee~~~~~~~~~p~~-~i~y~~~srq~iad~wp~~~dds~ar~~wh 332 (366)
T KOG2774|consen 265 QLLAADSQS----------LKRRTYNVTG-FSFTPEEIADAIRRVMPGF-EIDYDICTRQSIADSWPMSLDDSEARTEWH 332 (366)
T ss_pred HHHhCCHHH----------hhhheeeece-eccCHHHHHHHHHhhCCCc-eeecccchhhhhhhhcccccCchhHhhHHH
Confidence 999887653 2338999986 5599999999999997631 122222222 1233345789999999999
Q ss_pred CcccCCHHHHHHHHHHHHHHHhc
Q 042406 390 YMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 390 ~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
|+..+.+...+.-++.-.++.+.
T Consensus 333 ~~h~~~l~~~i~~~i~~~~~n~~ 355 (366)
T KOG2774|consen 333 EKHSLHLLSIISTVVAVHKSNLK 355 (366)
T ss_pred HhhhhhHHHHHHHHHHHHHhhhh
Confidence 99888877666666665555443
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=183.92 Aligned_cols=225 Identities=18% Similarity=0.167 Sum_probs=161.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-C
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-A 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~ 154 (424)
++++|+++||||+|+||.++++.|+++|++|++++|+.+.... .. ...++.++.+|++|.+++.++++.. +
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~----~~----~~~~~~~~~~D~~~~~~v~~~~~~~~~ 77 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDR----LA----GETGCEPLRLDVGDDAAIRAALAAAGA 77 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HH----HHhCCeEEEecCCCHHHHHHHHHHhCC
Confidence 3678899999999999999999999999999999996432211 11 1124678899999999999988864 4
Q ss_pred ccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|+||||||...... ...+.+..+.+|+.++.++++++.+. +..++||++||...+... .
T Consensus 78 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~ 145 (245)
T PRK07060 78 FDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGL------------P 145 (245)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCC------------C
Confidence 799999999854321 12334567889999999998877653 222489999997665421 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
+...|+.+|.++|.+++.++.++ +++++++|||.++++..............+... .....++++
T Consensus 146 ~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 213 (245)
T PRK07060 146 DHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAA------------IPLGRFAEV 213 (245)
T ss_pred CCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHhc------------CCCCCCCCH
Confidence 45789999999999999998764 899999999999998532110001111111111 112348999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+|+|++++.++..+... .+|+.+++.+|.
T Consensus 214 ~d~a~~~~~l~~~~~~~----------~~G~~~~~~~g~ 242 (245)
T PRK07060 214 DDVAAPILFLLSDAASM----------VSGVSLPVDGGY 242 (245)
T ss_pred HHHHHHHHHHcCcccCC----------ccCcEEeECCCc
Confidence 99999999998765422 345888887764
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-22 Score=185.90 Aligned_cols=216 Identities=15% Similarity=0.112 Sum_probs=151.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
.+|+++||||+|+||++++++|+++|++|++++|+.+.... ... ....++.++.+|++|.+++.++++++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~----l~~--~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 76 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARAD----FEA--LHPDRALARLLDVTDFDAIDAVVADAEATF 76 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHH----HHh--hcCCCeeEEEccCCCHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999996542211 111 12346889999999999998888764
Q ss_pred -CccEEEEcccccCchhhcc----ChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRYAMQ----NPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~~~~----~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||........+ +.+..+++|+.|+.++++++. +.+.+ +||++||.+.+...
T Consensus 77 ~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~iSS~~~~~~~----------- 144 (277)
T PRK06180 77 GPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRG-HIVNITSMGGLITM----------- 144 (277)
T ss_pred CCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCC-EEEEEecccccCCC-----------
Confidence 5799999999854322222 235679999999999988853 34433 89999997665421
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-----cHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDM-----AYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.+...|+.+|++.|.+++.++.+ .|++++++|||.+.++...... ................. ...
T Consensus 145 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 217 (277)
T PRK06180 145 -PGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQARE------AKS 217 (277)
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHH------hhc
Confidence 35678999999999999998866 4899999999999887432111 11111110000000000 001
Q ss_pred ccccccHHHHHHHHHHHhhhcc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
...+..++|+|++++.+++.+.
T Consensus 218 ~~~~~~~~dva~~~~~~l~~~~ 239 (277)
T PRK06180 218 GKQPGDPAKAAQAILAAVESDE 239 (277)
T ss_pred cCCCCCHHHHHHHHHHHHcCCC
Confidence 1235679999999999998764
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-22 Score=186.45 Aligned_cols=234 Identities=16% Similarity=0.129 Sum_probs=158.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+|+||||+|+||+++++.|+++|++|++++|+.+..+........ ......+.++.+|++|++++.+++++.
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGK-EFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHh-hcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999976544333222211 112345678899999999999988864
Q ss_pred --CccEEEEcccccCch-------hhccChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVR-------YAMQNPNSYVESNIAGFVNLLE----TCKSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~-------~~~~~~~~~~~~N~~g~~~ll~----a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+|||||+..... ...+..+..+++|+.++..+++ .+++.+.+ +||++||.+.+..... ...+
T Consensus 81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~~~-~~~~ 158 (256)
T PRK09186 81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGG-NLVNISSIYGVVAPKF-EIYE 158 (256)
T ss_pred cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc-eEEEEechhhhccccc-hhcc
Confidence 379999999753211 1112235678889988765544 44545554 8999999665432111 1112
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
+.+. .....|++||.+.+.+++.++.+. ++++++++||.++++... .+........+ .
T Consensus 159 ~~~~-~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~------~~~~~~~~~~~------------~ 219 (256)
T PRK09186 159 GTSM-TSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPE------AFLNAYKKCCN------------G 219 (256)
T ss_pred cccc-CCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCH------HHHHHHHhcCC------------c
Confidence 2222 223479999999999999888763 799999999998865311 12222221110 1
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+++++|+|++++.++.+.... .+|+.+.+.+|.
T Consensus 220 ~~~~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~~g~ 254 (256)
T PRK09186 220 KGMLDPDDICGTLVFLLSDQSKY----------ITGQNIIVDDGF 254 (256)
T ss_pred cCCCCHHHhhhhHhheecccccc----------ccCceEEecCCc
Confidence 23789999999999999765432 234778777663
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-22 Score=185.22 Aligned_cols=229 Identities=13% Similarity=0.075 Sum_probs=160.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+..+|+++||||+|+||++++++|+++|++|+++++.............. ....++.++.+|++|.+++.++++++
T Consensus 6 ~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 83 (258)
T PRK09134 6 MAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIR--ALGRRAVALQADLADEAEVRALVARASA 83 (258)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999887754221111111111 12346889999999999999888764
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKSSD---PQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~~---~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||..... ...++.+..+++|+.++.++++++.... ..+++|++||...+...
T Consensus 84 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~---------- 153 (258)
T PRK09134 84 ALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLN---------- 153 (258)
T ss_pred HcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCC----------
Confidence 579999999975432 1223346789999999999998876532 22488888886554321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
.....|+.+|.+.|.+++.+++++ ++++++++||.++.+... ....+. ......+ . + ...
T Consensus 154 --p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~---~~~~~~-~~~~~~~--~----~------~~~ 215 (258)
T PRK09134 154 --PDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ---SPEDFA-RQHAATP--L----G------RGS 215 (258)
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc---ChHHHH-HHHhcCC--C----C------CCc
Confidence 223579999999999999998765 499999999998765321 111222 2222111 1 1 146
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccH
Q 042406 302 YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPV 346 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 346 (424)
+++|+|++++.+++.+. ..++.|++.++..+++
T Consensus 216 ~~~d~a~~~~~~~~~~~------------~~g~~~~i~gg~~~~~ 248 (258)
T PRK09134 216 TPEEIAAAVRYLLDAPS------------VTGQMIAVDGGQHLAW 248 (258)
T ss_pred CHHHHHHHHHHHhcCCC------------cCCCEEEECCCeeccc
Confidence 79999999999998543 3348899988765544
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-22 Score=184.21 Aligned_cols=211 Identities=20% Similarity=0.188 Sum_probs=151.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+.+|+++||||+|+||++++++|+++|++|++++|+.+.... ...+ . ..++.++++|++|.+++.++++.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~----~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEA----ARAE-L-GESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHH----HHHH-h-CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999986432211 1111 1 246788999999999887776643
Q ss_pred --CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecC-CcccCCCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASS-SSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS-~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||..... ...++.+..+++|+.++.++++++...- ...++|++|| .+.|+.
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~------------- 144 (249)
T PRK06500 78 FGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGM------------- 144 (249)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCC-------------
Confidence 579999999975432 1233456789999999999999987521 1136666666 455542
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC----CCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGR----PDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.....|+.+|++.|.+++.++.++ |++++++|||.+++|... .......+...+....++.
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 212 (249)
T PRK06500 145 PNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLG------------ 212 (249)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCC------------
Confidence 345789999999999999988664 899999999999997421 1111223333333332221
Q ss_pred ccccHHHHHHHHHHHhhhcc
Q 042406 299 DFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~ 318 (424)
-+..++|+|++++.++....
T Consensus 213 ~~~~~~~va~~~~~l~~~~~ 232 (249)
T PRK06500 213 RFGTPEEIAKAVLYLASDES 232 (249)
T ss_pred CCcCHHHHHHHHHHHcCccc
Confidence 14578999999999886543
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.9e-22 Score=181.58 Aligned_cols=226 Identities=15% Similarity=0.126 Sum_probs=162.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+.+|+|+||||+|+||.++++.|+++|++|++++|+............ ....++.++.+|++|.+++.++++++
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELR---AAGGEARVLVFDVSDEAAVRALIEAAVEA 79 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999997654322211111 12346889999999999998888764
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
.+|+|||+||...... ..++.+..++.|+.+..++++++. +.+. ++||++||......
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~~ii~~ss~~~~~~----------- 147 (246)
T PRK05653 80 FGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARY-GRIVNISSVSGVTG----------- 147 (246)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEECcHHhccC-----------
Confidence 5799999999754321 122235678999999999888874 4454 49999999654321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
..+...|+.+|.+.+.+++.++++. +++++++|||.++++.... ............. ....+
T Consensus 148 -~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~--~~~~~~~~~~~~~------------~~~~~ 212 (246)
T PRK05653 148 -NPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG--LPEEVKAEILKEI------------PLGRL 212 (246)
T ss_pred -CCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh--hhHHHHHHHHhcC------------CCCCC
Confidence 1345789999999999999987653 8999999999999985532 1111111111111 12458
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
++++|+++++..++...... ..+++|++++|.
T Consensus 213 ~~~~dva~~~~~~~~~~~~~----------~~g~~~~~~gg~ 244 (246)
T PRK05653 213 GQPEEVANAVAFLASDAASY----------ITGQVIPVNGGM 244 (246)
T ss_pred cCHHHHHHHHHHHcCchhcC----------ccCCEEEeCCCe
Confidence 88999999999998654321 344899999875
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-22 Score=182.32 Aligned_cols=226 Identities=13% Similarity=0.117 Sum_probs=159.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+++||||+|+||.+++++|+++|++|++++|+.. ........ . ...++.++.+|++|.+++.++++..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~-~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVE-A--LGRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHH-h--cCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998542 11111111 1 1346889999999999998887754
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||...... ..++.+..+++|+.++.++++++.+ .+...++|++||...+...
T Consensus 78 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---------- 147 (248)
T TIGR01832 78 FGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG---------- 147 (248)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC----------
Confidence 5899999999854321 1233457899999999888887753 3323489999998777532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.....|+.+|++.+.+++.+++++ |+++++|+||.|..+....-.........+... . ....+
T Consensus 148 --~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~--~----------~~~~~ 213 (248)
T TIGR01832 148 --IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILER--I----------PAGRW 213 (248)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhc--C----------CCCCC
Confidence 234679999999999999998875 899999999999887432100000111111111 1 11348
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
+..+|+|++++.++...... ..|+++.+.+|
T Consensus 214 ~~~~dva~~~~~l~s~~~~~----------~~G~~i~~dgg 244 (248)
T TIGR01832 214 GTPDDIGGPAVFLASSASDY----------VNGYTLAVDGG 244 (248)
T ss_pred cCHHHHHHHHHHHcCccccC----------cCCcEEEeCCC
Confidence 89999999999988754321 23366666654
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-22 Score=183.91 Aligned_cols=227 Identities=15% Similarity=0.105 Sum_probs=159.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
|+++||||+|+||+++++.|+++|++|++++|+............ . ....++.++.+|++|.+++.++++.+ +
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQEL-R-ALGVEVIFFPADVADLSAHEAMLDAAQAAWGR 80 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHH-H-hcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999986432211111111 0 11346899999999999988888765 6
Q ss_pred ccEEEEcccccCch------hhccChHHHHHHHHHHHHHHHHHHHhc----CC-----CCeEEEecCCcccCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVR------YAMQNPNSYVESNIAGFVNLLETCKSS----DP-----QPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~ll~a~~~~----~~-----~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
+|+||||||..... ...++.+..+++|+.++.++++++.+. .. ..+||++||...+...
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 154 (256)
T PRK12745 81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVS------ 154 (256)
T ss_pred CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCC------
Confidence 89999999975321 122344678999999999998877442 11 2379999997664321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.+.+.|+.+|.+.|.+++.++.+ +|+++++++||.+.++..... ...+...+..+ ..+
T Consensus 155 ------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~--~~~~~~~~~~~-~~~---------- 215 (256)
T PRK12745 155 ------PNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPV--TAKYDALIAKG-LVP---------- 215 (256)
T ss_pred ------CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCcccccc--chhHHhhhhhc-CCC----------
Confidence 34578999999999999999865 589999999999998754321 11121111111 111
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
...+.+++|+++++..++...... ..|++|++.++..
T Consensus 216 ~~~~~~~~d~a~~i~~l~~~~~~~----------~~G~~~~i~gg~~ 252 (256)
T PRK12745 216 MPRWGEPEDVARAVAALASGDLPY----------STGQAIHVDGGLS 252 (256)
T ss_pred cCCCcCHHHHHHHHHHHhCCcccc----------cCCCEEEECCCee
Confidence 224779999999999887654321 2348999988754
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-22 Score=197.47 Aligned_cols=240 Identities=13% Similarity=0.063 Sum_probs=164.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhh------hccCCeEEEEccCCCHHHHHH
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL------LERAGVFVIDADINDKSLLDK 148 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~v~~~~~Dl~d~~~v~~ 148 (424)
....+++|+||||+|+||++++++|+++|++|++++|+.+............. ....++.++.+|+.|.+++.+
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~ 155 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP 155 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence 34578999999999999999999999999999999997654433222111100 012358899999999999999
Q ss_pred HhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCC
Q 042406 149 IFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPA 228 (424)
Q Consensus 149 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~ 228 (424)
++.++ |+||||+|.... ...+....+++|+.|+.+++++|++.+++ +||++||.+++.... ... .....
T Consensus 156 aLggi--DiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VSSiga~~~g~----p~~--~~~sk 224 (576)
T PLN03209 156 ALGNA--SVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVTSLGTNKVGF----PAA--ILNLF 224 (576)
T ss_pred HhcCC--CEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEccchhcccCc----ccc--chhhH
Confidence 99876 999999987432 12244567899999999999999998876 999999987632110 000 01233
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHH
Q 042406 229 SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVK 308 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 308 (424)
..|..+|..+|..+.. .|+++++||||.++++.+... ....+... .........+..+|+|+
T Consensus 225 ~~~~~~KraaE~~L~~----sGIrvTIVRPG~L~tp~d~~~-----------~t~~v~~~---~~d~~~gr~isreDVA~ 286 (576)
T PLN03209 225 WGVLCWKRKAEEALIA----SGLPYTIVRPGGMERPTDAYK-----------ETHNLTLS---EEDTLFGGQVSNLQVAE 286 (576)
T ss_pred HHHHHHHHHHHHHHHH----cCCCEEEEECCeecCCccccc-----------cccceeec---cccccCCCccCHHHHHH
Confidence 5577778888877653 499999999999998744311 00111111 01111123588999999
Q ss_pred HHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHH
Q 042406 309 GCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLE 354 (424)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~ 354 (424)
+++.++.++... .+++|.+.++.......+.+++.
T Consensus 287 vVvfLasd~~as-----------~~kvvevi~~~~~p~~~~~~~~~ 321 (576)
T PLN03209 287 LMACMAKNRRLS-----------YCKVVEVIAETTAPLTPMEELLA 321 (576)
T ss_pred HHHHHHcCchhc-----------cceEEEEEeCCCCCCCCHHHHHH
Confidence 999988866432 23889998865443344444443
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-22 Score=186.21 Aligned_cols=210 Identities=18% Similarity=0.179 Sum_probs=148.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
++|+++||||+|+||++++++|+++|++|++++|+.+.... ....++.++.+|++|.++++++++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~---------~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMED---------LASLGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH---------HHhCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 56899999999999999999999999999999996532211 11235889999999999999888754
Q ss_pred -CccEEEEcccccCchh----hccChHHHHHHHHHHH----HHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGF----VNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~----~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||...... ..++.+..+++|+.++ ..+++.+++.+.+ +||++||.+.+...
T Consensus 73 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g-~iv~isS~~~~~~~----------- 140 (273)
T PRK06182 73 GRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSG-RIINISSMGGKIYT----------- 140 (273)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcchhhcCCC-----------
Confidence 6799999999854322 2234567899999985 5555666666654 89999996543211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC----------CcHHHHHHHHHcCCceeEEecC
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPD----------MAYFFFTRDIIRGKRITVYEAP 291 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
.....|+.+|.+.+.+++.++.+ .|+++++|+||.+.++..... ..+......+.. .+
T Consensus 141 -~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--- 211 (273)
T PRK06182 141 -PLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAA-----SM--- 211 (273)
T ss_pred -CCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHH-----HH---
Confidence 22357999999999999888754 489999999999998753210 000000000000 00
Q ss_pred CCCccccccccHHHHHHHHHHHhhhc
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
........+.+.+|+|++++.++...
T Consensus 212 ~~~~~~~~~~~~~~vA~~i~~~~~~~ 237 (273)
T PRK06182 212 RSTYGSGRLSDPSVIADAISKAVTAR 237 (273)
T ss_pred HHhhccccCCCHHHHHHHHHHHHhCC
Confidence 00011234678999999999998864
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-22 Score=181.97 Aligned_cols=225 Identities=16% Similarity=0.121 Sum_probs=155.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc-hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY-YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
+++++||||+|+||.+++++|+++|+.|++.++.... ......... ....++.++.+|++|.+++.++++.+
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIR---RQGGEALAVAADVADEADVLRLFEAVDREL 78 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHH---hCCCcEEEEEeccCCHHHHHHHHHHHHHHh
Confidence 4679999999999999999999999998887754321 111111111 11245788999999999999888754
Q ss_pred -CccEEEEcccccCchh-----hccChHHHHHHHHHHHHHHHHHHHhcC------CCCeEEEecCCcc-cCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY-----AMQNPNSYVESNIAGFVNLLETCKSSD------PQPAIVWASSSSV-YGVNKKVPFSE 220 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~-----~~~~~~~~~~~N~~g~~~ll~a~~~~~------~~~~~v~~SS~~v-yg~~~~~~~~e 220 (424)
++|+||||||...... ..++.+..+++|+.++.++++++.+.. ..++||++||.+. ++..
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------- 151 (248)
T PRK06123 79 GRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSP------- 151 (248)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCC-------
Confidence 5799999999854321 222345789999999999888775431 1237999999654 4321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.....|+.+|++.+.+++.++.++ |+++++||||.+++|...... .+.....+....++..
T Consensus 152 -----~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~-~~~~~~~~~~~~p~~~---------- 215 (248)
T PRK06123 152 -----GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG-EPGRVDRVKAGIPMGR---------- 215 (248)
T ss_pred -----CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC-CHHHHHHHHhcCCCCC----------
Confidence 112469999999999999998775 899999999999998532211 1222222222222211
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
+.+++|++++++.++...... ..|+.|++.++
T Consensus 216 --~~~~~d~a~~~~~l~~~~~~~----------~~g~~~~~~gg 247 (248)
T PRK06123 216 --GGTAEEVARAILWLLSDEASY----------TTGTFIDVSGG 247 (248)
T ss_pred --CcCHHHHHHHHHHHhCccccC----------ccCCEEeecCC
Confidence 346899999999888754321 23478998765
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=181.64 Aligned_cols=226 Identities=14% Similarity=0.081 Sum_probs=160.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
++|++|||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++..
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRA---KGGNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999965433222111111 2346899999999999999888753
Q ss_pred -CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||...... ...+.+..+++|+.++.++++++. +.+. ++||++||.+.+...
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~iss~~~~~~~----------- 146 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGA-GRIVNIASDAARVGS----------- 146 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-eEEEEECchhhccCC-----------
Confidence 5799999999743211 112235679999999998877764 4444 389999998777532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC----CCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP----DMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.....|+.+|++.+.+++.++++. ++++++++||.++++.... ......+...+....+.
T Consensus 147 -~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 213 (250)
T TIGR03206 147 -SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPL------------ 213 (250)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCc------------
Confidence 234679999999999999988764 8999999999999873211 00001122222222111
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
.-+...+|+|+++..++...... ..|+++++.+|
T Consensus 214 ~~~~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~~g 247 (250)
T TIGR03206 214 GRLGQPDDLPGAILFFSSDDASF----------ITGQVLSVSGG 247 (250)
T ss_pred cCCcCHHHHHHHHHHHcCcccCC----------CcCcEEEeCCC
Confidence 12556799999999988764322 34589999875
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-22 Score=183.16 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=160.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++.+|+++||||+|+||+++++.|+++|++|++++|+.+. .....++.++++|++|.+++.++++.+
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-----------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 71 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-----------TVDGRPAEFHAADVRDPDQVAALVDAIVE 71 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-----------hhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999996432 012346889999999999999888765
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ...+.+..+++|+.++.++++++.. .+...+||++||...+..
T Consensus 72 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~---------- 141 (252)
T PRK07856 72 RHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRP---------- 141 (252)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCC----------
Confidence 6899999999753221 1223457899999999999988754 222238999999766532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
......|+.+|.+.+.+++.++.++ .+++++|+||.|.++..............+....+ ...+
T Consensus 142 --~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~ 207 (252)
T PRK07856 142 --SPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDAEGIAAVAATVP------------LGRL 207 (252)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCHHHHHHHhhcCC------------CCCC
Confidence 1345789999999999999998875 38999999999987632210000011111211111 1125
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
...+|+|++++.++...... .+|..+.+.+|...
T Consensus 208 ~~p~~va~~~~~L~~~~~~~----------i~G~~i~vdgg~~~ 241 (252)
T PRK07856 208 ATPADIAWACLFLASDLASY----------VSGANLEVHGGGER 241 (252)
T ss_pred cCHHHHHHHHHHHcCcccCC----------ccCCEEEECCCcch
Confidence 67899999999888654322 44588888876533
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=181.51 Aligned_cols=230 Identities=16% Similarity=0.122 Sum_probs=159.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch-hhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY-ETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+.. ......... ...++.++.+|++|.+++.++++.+
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~i~~~~~~~~ 81 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEA---AGRRAIQIAADVTSKADLRAAVARTE 81 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999975422 211111111 1346789999999999999888764
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||...... ..++.+..+++|+.++..+++++ ++.+. ++||++||.+.+....
T Consensus 82 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~~------- 153 (254)
T PRK06114 82 AELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGG-GSIVNIASMSGIIVNR------- 153 (254)
T ss_pred HHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-cEEEEECchhhcCCCC-------
Confidence 5799999999854321 22334678999999987776655 33443 3899999966543211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
..+...|+.+|++.+.+++.++.++ |+++++|+||.+.++........ .....+....+ + .
T Consensus 154 ---~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~~-~~~~~~~~~~p--~----------~ 217 (254)
T PRK06114 154 ---GLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEMV-HQTKLFEEQTP--M----------Q 217 (254)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccch-HHHHHHHhcCC--C----------C
Confidence 0124679999999999999998754 89999999999988753211111 11112222111 1 1
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
-+..++|++.+++.++...... ..|+++.+.+|.
T Consensus 218 r~~~~~dva~~~~~l~s~~~~~----------~tG~~i~~dgg~ 251 (254)
T PRK06114 218 RMAKVDEMVGPAVFLLSDAASF----------CTGVDLLVDGGF 251 (254)
T ss_pred CCcCHHHHHHHHHHHcCccccC----------cCCceEEECcCE
Confidence 2567899999999988654322 344788877653
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=182.39 Aligned_cols=230 Identities=14% Similarity=0.162 Sum_probs=164.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+|+||||+|+||.++++.|+++|++|++++|+.+........... ...++.++.+|++|.+++.++++..
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999865443322222111 1346888999999999998877654
Q ss_pred ---CccEEEEcccccCchh---hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY---AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~---~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||...... ..++.+..+++|+.++.++++++.. .+. .+||++||.+....
T Consensus 85 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~----------- 152 (255)
T PRK06113 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG-GVILTITSMAAENK----------- 152 (255)
T ss_pred HcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCC-cEEEEEecccccCC-----------
Confidence 6799999999754321 1233456799999999999998763 333 38999999665321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
..+...|+.+|.+.+.+++.++.+. |+++++++||.+..+.... ...+.+........+. .-+
T Consensus 153 -~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~-~~~~~~~~~~~~~~~~------------~~~ 218 (255)
T PRK06113 153 -NINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS-VITPEIEQKMLQHTPI------------RRL 218 (255)
T ss_pred -CCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccc-ccCHHHHHHHHhcCCC------------CCC
Confidence 1345789999999999999998653 7999999999998764321 1122233333322211 125
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
...+|++++++.++...... ..|+++++.++...
T Consensus 219 ~~~~d~a~~~~~l~~~~~~~----------~~G~~i~~~gg~~~ 252 (255)
T PRK06113 219 GQPQDIANAALFLCSPAASW----------VSGQILTVSGGGVQ 252 (255)
T ss_pred cCHHHHHHHHHHHcCccccC----------ccCCEEEECCCccc
Confidence 68899999999988654321 34589999887543
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=182.68 Aligned_cols=229 Identities=16% Similarity=0.117 Sum_probs=162.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
.++|+++||||+|+||.++++.|+++|++|++++|+.+..+....... ....++.++.+|++|.++++++++..
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~---~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLE---ALGIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999996543322221111 12346788999999999998777653
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc-----CCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS-----DPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~-----~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..+..+..+++|+.++.++++++.+. +. ++||++||...+.....
T Consensus 87 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~-~~~v~~sS~~~~~~~~~------- 158 (259)
T PRK08213 87 FGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGY-GRIINVASVAGLGGNPP------- 158 (259)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCC-eEEEEECChhhccCCCc-------
Confidence 5799999999743221 12233568899999999999987654 33 38999999766543211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
...+...|+.+|++.+.+++.+++++ |+++++++||.+-++.... .++.+.+.+....++..
T Consensus 159 -~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~--~~~~~~~~~~~~~~~~~------------ 223 (259)
T PRK08213 159 -EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRG--TLERLGEDLLAHTPLGR------------ 223 (259)
T ss_pred -cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhh--hhHHHHHHHHhcCCCCC------------
Confidence 01245789999999999999998764 7999999999987763321 23344444444333322
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
+...+|++.++..++...... ..|+.+++.++
T Consensus 224 ~~~~~~va~~~~~l~~~~~~~----------~~G~~~~~~~~ 255 (259)
T PRK08213 224 LGDDEDLKGAALLLASDASKH----------ITGQILAVDGG 255 (259)
T ss_pred CcCHHHHHHHHHHHhCccccC----------ccCCEEEECCC
Confidence 345799999988887654332 33478887765
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-21 Score=182.57 Aligned_cols=232 Identities=11% Similarity=0.040 Sum_probs=160.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+++||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|++|.++++++++.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKS--ESNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--hcCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 6789999999999999999999999999999999976543332222211 12346889999999999999888754
Q ss_pred -CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHH----HHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLL----ETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll----~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|++|||||..... ...++.+..+++|+.+...++ +.+++.+.+ +||++||...+..
T Consensus 84 g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g-~Ii~isS~~~~~~------------ 150 (263)
T PRK08339 84 GEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFG-RIIYSTSVAIKEP------------ 150 (263)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEEcCccccCC------------
Confidence 579999999975332 122344678999988865554 445555544 8999999876432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC---------CCcHHHHHHHHHcCCceeEEecCC
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP---------DMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
......|+++|.+.+.+++.++.++ |+++++|.||.|..+.... ..........+... ++
T Consensus 151 ~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p------ 222 (263)
T PRK08339 151 IPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKP--IP------ 222 (263)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhcc--CC------
Confidence 1234679999999999999998775 7999999999997752110 00000111111111 11
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
..-+...+|+|.+++.++...... ..|+++.+.+|...|
T Consensus 223 ----~~r~~~p~dva~~v~fL~s~~~~~----------itG~~~~vdgG~~~~ 261 (263)
T PRK08339 223 ----LGRLGEPEEIGYLVAFLASDLGSY----------INGAMIPVDGGRLNS 261 (263)
T ss_pred ----cccCcCHHHHHHHHHHHhcchhcC----------ccCceEEECCCcccc
Confidence 112667899999999888654322 344788887776544
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-21 Score=181.54 Aligned_cols=225 Identities=18% Similarity=0.141 Sum_probs=156.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+.+|+++||||+|+||+++++.|+++|++|+++++..+.. .... ...++.++.+|++|.+++.++++..
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~---~~~l-----~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENE---AKEL-----REKGVFTIKCDVGNRDQVKKSKEVVEK 75 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHH---HHHH-----HhCCCeEEEecCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999887754311 1111 1125789999999999999988765
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHH----HHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNL----LETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l----l~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||..... ...++.+..+++|+.++..+ ++.+++.+. ++||++||...++..
T Consensus 76 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS~~~~~~~--------- 145 (255)
T PRK06463 76 EFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKN-GAIVNIASNAGIGTA--------- 145 (255)
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcCHHhCCCC---------
Confidence 689999999985321 12233457899999996555 444554443 389999998776421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC---CCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP---DMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
......|++||++.+.+++.++.++ |+++++|+||.|-.+.... ......+...+....+
T Consensus 146 --~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------------ 211 (255)
T PRK06463 146 --AEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTV------------ 211 (255)
T ss_pred --CCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCC------------
Confidence 1234679999999999999998764 8999999999987653211 0001111111111111
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+...+|++++++.++...... ..|+.+.+.+|.
T Consensus 212 ~~~~~~~~~va~~~~~l~s~~~~~----------~~G~~~~~dgg~ 247 (255)
T PRK06463 212 LKTTGKPEDIANIVLFLASDDARY----------ITGQVIVADGGR 247 (255)
T ss_pred cCCCcCHHHHHHHHHHHcChhhcC----------CCCCEEEECCCe
Confidence 123567899999999988765422 344788887765
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=180.06 Aligned_cols=229 Identities=14% Similarity=0.105 Sum_probs=155.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCC-CCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF-NNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++|+++||||+|+||.+++++|+++|++|++.++. .+........... ....+..+.+|++|.+++..+++..
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS---NGGSAFSIGANLESLHGVEALYSSLDN 78 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHh---cCCceEEEecccCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999987643 2222222111111 1345778999999988877655432
Q ss_pred ---------CccEEEEcccccCchhhc----cChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ---------AFTHVMHLAAQAGVRYAM----QNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ---------~~d~vi~~Ag~~~~~~~~----~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||........ ++.+..+++|+.++..+++++.+.. ...+||++||...+...
T Consensus 79 ~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------ 152 (252)
T PRK12747 79 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL------ 152 (252)
T ss_pred HhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCC------
Confidence 579999999975322111 2235688999999999888776532 12389999998765421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.....|+.||++.+.+++.++.++ |+++++|+||.|.++....-.. ........... ..
T Consensus 153 ------~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~-----------~~ 214 (252)
T PRK12747 153 ------PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLS-DPMMKQYATTI-----------SA 214 (252)
T ss_pred ------CCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhccc-CHHHHHHHHhc-----------Cc
Confidence 335789999999999999998765 8999999999998874321000 00111111100 01
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+.+++|+|.++..++...... ..|+.+.+.+|.
T Consensus 215 ~~~~~~~~dva~~~~~l~s~~~~~----------~~G~~i~vdgg~ 250 (252)
T PRK12747 215 FNRLGEVEDIADTAAFLASPDSRW----------VTGQLIDVSGGS 250 (252)
T ss_pred ccCCCCHHHHHHHHHHHcCccccC----------cCCcEEEecCCc
Confidence 123778999999999887654321 334788887653
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=180.32 Aligned_cols=224 Identities=13% Similarity=0.125 Sum_probs=160.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++++++||||+|+||..+++.|+++|++|++++|+.+........... ...++.++++|++|.++++++++..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGA---LGTEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999999999976443332222111 1346889999999999988877764
Q ss_pred --CccEEEEcccccCch-------------hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCC
Q 042406 154 --AFTHVMHLAAQAGVR-------------YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNK 214 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~-------------~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~ 214 (424)
++|+||||||..... ...++.+..+++|+.++.++++++. +......+|++||.+.|+.
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~-- 157 (253)
T PRK08217 80 FGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN-- 157 (253)
T ss_pred cCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC--
Confidence 579999999964321 1122335678899999887765443 2222237999999877753
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecC
Q 042406 215 KVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAP 291 (424)
Q Consensus 215 ~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
.+...|+.+|.+.+.+++.++++ .++++++++||.+.++.... ..+.+...+....+
T Consensus 158 -----------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~--~~~~~~~~~~~~~~------- 217 (253)
T PRK08217 158 -----------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAA--MKPEALERLEKMIP------- 217 (253)
T ss_pred -----------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccc--cCHHHHHHHHhcCC-------
Confidence 34578999999999999998865 48999999999998875432 12233333332222
Q ss_pred CCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+.+++|+|+++..++.... ..|++|++.++-
T Consensus 218 -----~~~~~~~~~~a~~~~~l~~~~~------------~~g~~~~~~gg~ 251 (253)
T PRK08217 218 -----VGRLGEPEEIAHTVRFIIENDY------------VTGRVLEIDGGL 251 (253)
T ss_pred -----cCCCcCHHHHHHHHHHHHcCCC------------cCCcEEEeCCCc
Confidence 1236688999999999885422 344899998764
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=180.95 Aligned_cols=230 Identities=15% Similarity=0.115 Sum_probs=162.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+.+|+++||||+|+||+.+++.|+++|++|++++|+.+........... .....++.++.+|++|.+++.++++.+
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAE-EFPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-hCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999975443332222211 112346889999999999988887754
Q ss_pred ---CccEEEEcccccCc----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV----RYAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||.... ....++.+..+.+|+.++.++++++. +.+. ++||++||...+...
T Consensus 85 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~sS~~~~~~~--------- 154 (257)
T PRK09242 85 HWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHAS-SAIVNIGSVSGLTHV--------- 154 (257)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-ceEEEECccccCCCC---------
Confidence 57999999997432 12233456789999999988888764 3343 389999998766431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.+...|+.+|.+.+.+++.++.++ |++++.++||.+.++..........+........+...
T Consensus 155 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~------------ 219 (257)
T PRK09242 155 ---RSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPMRR------------ 219 (257)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCCCCC------------
Confidence 345789999999999999988664 89999999999988754321111223333333222211
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
+...+|++.+++.++...... ..|+.+.+.++
T Consensus 220 ~~~~~~va~~~~~l~~~~~~~----------~~g~~i~~~gg 251 (257)
T PRK09242 220 VGEPEEVAAAVAFLCMPAASY----------ITGQCIAVDGG 251 (257)
T ss_pred CcCHHHHHHHHHHHhCccccc----------ccCCEEEECCC
Confidence 445799999999888654321 23477777654
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=180.79 Aligned_cols=229 Identities=14% Similarity=0.098 Sum_probs=160.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++.+|++|||||+|+||++++++|+++|++|++++|+.+........... ....+.++.+|++|.+++.++++..
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQ---EGIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHh---cCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999975443332222211 1245788999999999998887654
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+. .+||++||......
T Consensus 83 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~---------- 151 (254)
T PRK08085 83 DIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQA-GKIINICSMQSELG---------- 151 (254)
T ss_pred hcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEccchhccC----------
Confidence 579999999975321 12233457899999998888777654 333 38999999643211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.+.++..........+...+....+ ..-
T Consensus 152 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~p------------~~~ 217 (254)
T PRK08085 152 --RDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTP------------AAR 217 (254)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcCC------------CCC
Confidence 1345789999999999999998764 89999999999998743211101112222222111 123
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+...+|++.+++.++...... ..|++..+.+|.
T Consensus 218 ~~~~~~va~~~~~l~~~~~~~----------i~G~~i~~dgg~ 250 (254)
T PRK08085 218 WGDPQELIGAAVFLSSKASDF----------VNGHLLFVDGGM 250 (254)
T ss_pred CcCHHHHHHHHHHHhCccccC----------CcCCEEEECCCe
Confidence 677899999999888754432 344677776653
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=179.56 Aligned_cols=229 Identities=13% Similarity=0.085 Sum_probs=160.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+.++|+++||||+|+||+++++.|+++|++|+++.|+............. ....++.++.+|++|.+++.++++++
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIE--AAGGRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHH--hcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999999998888755322111111111 12356899999999999999988864
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||...... ..++.+..+++|+.++.++++++.+.. ..++||++||...+.. .
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~------------~ 147 (245)
T PRK12937 80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALP------------L 147 (245)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCC------------C
Confidence 6799999999754211 222345689999999999988876542 1238999998665432 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.+...|+.+|.+.+.+++.++.++ ++++++++||.+-++..... ..+.....+....+.. -+.+
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~-~~~~~~~~~~~~~~~~------------~~~~ 214 (245)
T PRK12937 148 PGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNG-KSAEQIDQLAGLAPLE------------RLGT 214 (245)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhccc-CCHHHHHHHHhcCCCC------------CCCC
Confidence 345789999999999999987664 79999999999877642111 1112333333332221 2557
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
++|++.+++.++...... ..|+.+++.++
T Consensus 215 ~~d~a~~~~~l~~~~~~~----------~~g~~~~~~~g 243 (245)
T PRK12937 215 PEEIAAAVAFLAGPDGAW----------VNGQVLRVNGG 243 (245)
T ss_pred HHHHHHHHHHHcCccccC----------ccccEEEeCCC
Confidence 899999999888654422 33478888764
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=178.03 Aligned_cols=291 Identities=19% Similarity=0.214 Sum_probs=212.6
Q ss_pred CCCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 73 RPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 73 ~~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
.+.+.+|-.+-|.|||||+|++++.+|++.|-+|++--|..+......+ ..-....+-++.-|+.|+++++++.+.
T Consensus 55 GRsS~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lk----vmGdLGQvl~~~fd~~DedSIr~vvk~ 130 (391)
T KOG2865|consen 55 GRSSVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLK----VMGDLGQVLFMKFDLRDEDSIRAVVKH 130 (391)
T ss_pred CcccccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhhee----ecccccceeeeccCCCCHHHHHHHHHh
Confidence 4567788899999999999999999999999999999996543211111 111235788999999999999999998
Q ss_pred cCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHH
Q 042406 153 VAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYA 232 (424)
Q Consensus 153 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~ 232 (424)
. .+|||+.|... +...-...++|+.+...|++.|++.|+. +||++|+.+.- -...+-|-
T Consensus 131 s--NVVINLIGrd~----eTknf~f~Dvn~~~aerlAricke~GVe-rfIhvS~Lgan--------------v~s~Sr~L 189 (391)
T KOG2865|consen 131 S--NVVINLIGRDY----ETKNFSFEDVNVHIAERLARICKEAGVE-RFIHVSCLGAN--------------VKSPSRML 189 (391)
T ss_pred C--cEEEEeecccc----ccCCcccccccchHHHHHHHHHHhhChh-heeehhhcccc--------------ccChHHHH
Confidence 8 99999998532 2222356789999999999999999997 99999986521 02346788
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHH
Q 042406 233 ATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLA 312 (424)
Q Consensus 233 ~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 312 (424)
.+|.++|..+++.-- ..+|+||..|||..++ ++..+.....+=+.++++. .+....-..|||-|+|++|+.
T Consensus 190 rsK~~gE~aVrdafP----eAtIirPa~iyG~eDr---fln~ya~~~rk~~~~pL~~--~GekT~K~PVyV~DVaa~Ivn 260 (391)
T KOG2865|consen 190 RSKAAGEEAVRDAFP----EATIIRPADIYGTEDR---FLNYYASFWRKFGFLPLIG--KGEKTVKQPVYVVDVAAAIVN 260 (391)
T ss_pred HhhhhhHHHHHhhCC----cceeechhhhcccchh---HHHHHHHHHHhcCceeeec--CCcceeeccEEEehHHHHHHH
Confidence 999999999988643 4699999999998655 3444444444456677763 334566689999999999999
Q ss_pred HhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCC-----------------CC---
Q 042406 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR-----------------NG--- 372 (424)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~-----------------~~--- 372 (424)
++.++. ..|++|..+++..+...|+++.+-+....-......++|- ..
T Consensus 261 AvkDp~------------s~Gktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~mP~f~a~a~~~~f~~~pf~~~~pln 328 (391)
T KOG2865|consen 261 AVKDPD------------SMGKTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLPMPIFKAMAAARDFMIVPFPPPSPLN 328 (391)
T ss_pred hccCcc------------ccCceeeecCCchhhHHHHHHHHHHHHhhccccccCCcHHHHHHHhhhheeecCCCCCCCCC
Confidence 999885 3458999999999999999999988877644433333321 10
Q ss_pred -------CcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHH
Q 042406 373 -------DVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 373 -------~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~ 410 (424)
.....+++...--.+||..++ .+|...-+.+..|++.
T Consensus 329 ~d~ie~~~v~~~vlt~~~tleDLgv~~t-~le~~~~e~l~~yR~~ 372 (391)
T KOG2865|consen 329 RDQIERLTVTDLVLTGAPTLEDLGVVLT-KLELYPVEFLRQYRKG 372 (391)
T ss_pred HHHhhheeehhhhcCCCCcHhhcCceee-ecccccHHHHHHHhhc
Confidence 001112333333456888765 6776665666555554
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=183.71 Aligned_cols=176 Identities=22% Similarity=0.197 Sum_probs=136.1
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+..+.+|+|+|||||++||.++|.+|+++|..++.+.|..++++....+.+...... ++.++++|++|.+++.++++..
T Consensus 7 ~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~ 85 (282)
T KOG1205|consen 7 MERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWA 85 (282)
T ss_pred HHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHH
Confidence 446789999999999999999999999999999999998887776655554443333 7999999999999999888554
Q ss_pred -----CccEEEEcccccCchhhccC----hHHHHHHHHHHHHHHH----HHHHhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRYAMQN----PNSYVESNIAGFVNLL----ETCKSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~~~~~----~~~~~~~N~~g~~~ll----~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|++|||||+......+.. ....+++|+.|+..+. ..+++.+ ..+||.+||...+-..
T Consensus 86 ~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~~------- 157 (282)
T KOG1205|consen 86 IRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMPL------- 157 (282)
T ss_pred HHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccCC-------
Confidence 78999999999763222221 2358999999966554 4556666 3499999997775421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---C--CcEEEEEeccccCC
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---G--LSITGLRFFTVYGP 264 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~--i~~~~vrp~~v~G~ 264 (424)
+..+.|++||+|.+.+.+.+..+. + +++ +|.||.|-..
T Consensus 158 -----P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i-~V~PG~V~Te 200 (282)
T KOG1205|consen 158 -----PFRSIYSASKHALEGFFETLRQELIPLGTIIII-LVSPGPIETE 200 (282)
T ss_pred -----CcccccchHHHHHHHHHHHHHHHhhccCceEEE-EEecCceeec
Confidence 223589999999999999999886 2 333 6899988654
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=181.28 Aligned_cols=227 Identities=13% Similarity=0.095 Sum_probs=158.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+++||++++++|+++|++|++++|+.. ........ ....++.++.+|++|.+++.++++..
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVE---ALGRKFHFITADLIQQKDIDSIVSQAVE 79 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHH---HcCCeEEEEEeCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999988532 11111111 12346889999999999999988764
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||...... ..++.+..+++|+.++..+.+++.. .+...+||++||...+...
T Consensus 80 ~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~--------- 150 (251)
T PRK12481 80 VMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGG--------- 150 (251)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCC---------
Confidence 6899999999754321 2334567899999998887776543 3322489999998766421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.....|+.||.+.+.+++.++.+ +|+++++|+||.|-.+....-.........+....+ . ..
T Consensus 151 ---~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p--~----------~~ 215 (251)
T PRK12481 151 ---IRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILERIP--A----------SR 215 (251)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhcCC--C----------CC
Confidence 23467999999999999998875 489999999999977632110000011111221111 1 12
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 216 ~~~peeva~~~~~L~s~~~~~----------~~G~~i~vdgg 247 (251)
T PRK12481 216 WGTPDDLAGPAIFLSSSASDY----------VTGYTLAVDGG 247 (251)
T ss_pred CcCHHHHHHHHHHHhCccccC----------cCCceEEECCC
Confidence 567899999999988654432 34477777665
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=179.72 Aligned_cols=230 Identities=14% Similarity=0.086 Sum_probs=162.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++|+++||||+|+||+.++++|+++|++|++++|+.+........... ...++.++.+|++|.+++.++++++
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA---AGGAAEALAFDIADEEAVAAAFARID 83 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999975433322221211 2346889999999999998888754
Q ss_pred ----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||..... ...++.+..+.+|+.++.++++++.+ .+.+ +||++||...+...
T Consensus 84 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~ss~~~~~~~-------- 154 (256)
T PRK06124 84 AEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYG-RIIAITSIAGQVAR-------- 154 (256)
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEeechhccCC--------
Confidence 579999999975432 12233457899999999888866543 4543 89999997654321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.....|+.+|.+.+.+++.++.+. ++++++|+||.+.++..........+...+.... + ..
T Consensus 155 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~--~----------~~ 218 (256)
T PRK06124 155 ----AGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRT--P----------LG 218 (256)
T ss_pred ----CCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcC--C----------CC
Confidence 234789999999999999987664 8999999999999885321110111222222111 1 12
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+++++|++++++.++...... ..|+.+.+.+|.
T Consensus 219 ~~~~~~~~a~~~~~l~~~~~~~----------~~G~~i~~dgg~ 252 (256)
T PRK06124 219 RWGRPEEIAGAAVFLASPAASY----------VNGHVLAVDGGY 252 (256)
T ss_pred CCCCHHHHHHHHHHHcCcccCC----------cCCCEEEECCCc
Confidence 3788999999999998775432 233677776553
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=181.00 Aligned_cols=226 Identities=14% Similarity=0.044 Sum_probs=158.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||++++++|+++|++|++++|+.+. ....++.++++|++|.+++.++++..
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~------------~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD------------DLPEGVEFVAADLTTAEGCAAVARAVLE 73 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh------------hcCCceeEEecCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999996431 01246889999999999988777654
Q ss_pred ---CccEEEEcccccCch------hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR------YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||..... ...++.+..+++|+.++.++++++ ++.+.+ +||++||...+...
T Consensus 74 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~ii~isS~~~~~~~------- 145 (260)
T PRK06523 74 RLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSG-VIIHVTSIQRRLPL------- 145 (260)
T ss_pred HcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCc-EEEEEecccccCCC-------
Confidence 579999999964211 123345678999999987775554 444443 89999997665321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC---------CcHHHHHHHHHcC-CceeE
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD---------MAYFFFTRDIIRG-KRITV 287 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~---------~~~~~~~~~~~~~-~~~~~ 287 (424)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.+|..... .........+... ..++
T Consensus 146 ----~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 220 (260)
T PRK06523 146 ----PESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGGIP- 220 (260)
T ss_pred ----CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhccCc-
Confidence 1245789999999999999998764 89999999999998743210 0000111111100 0011
Q ss_pred EecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 288 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
...+...+|+|++++.++...... ..|+.+.+.+|...|
T Consensus 221 ---------~~~~~~~~~va~~~~~l~s~~~~~----------~~G~~~~vdgg~~~~ 259 (260)
T PRK06523 221 ---------LGRPAEPEEVAELIAFLASDRAAS----------ITGTEYVIDGGTVPT 259 (260)
T ss_pred ---------cCCCCCHHHHHHHHHHHhCccccc----------ccCceEEecCCccCC
Confidence 112557899999999988654322 344889998876554
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=179.27 Aligned_cols=228 Identities=16% Similarity=0.128 Sum_probs=163.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||.++++.|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEA---AGGRAHAIAADLADPASVQRFFDAAAA 80 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999865443332222211 1346899999999999999888763
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ...+.+..+.+|+.++.++++++.+. +. .+||++||...+...
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 150 (250)
T PRK12939 81 ALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGR-GRIVNLASDTALWGA--------- 150 (250)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-eEEEEECchhhccCC---------
Confidence 6799999999754321 12233567889999999988877542 22 389999996654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.....|+.+|.+.+.+++.++.+ .++++++|+||.+.++....-.. ..+....... .....
T Consensus 151 ---~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~------------~~~~~ 214 (250)
T PRK12939 151 ---PKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA-DERHAYYLKG------------RALER 214 (250)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC-hHHHHHHHhc------------CCCCC
Confidence 33467999999999999998765 38999999999998774321100 0122222221 12234
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+++++|+|++++.++...... ..|+.+.+.+|.
T Consensus 215 ~~~~~dva~~~~~l~~~~~~~----------~~G~~i~~~gg~ 247 (250)
T PRK12939 215 LQVPDDVAGAVLFLLSDAARF----------VTGQLLPVNGGF 247 (250)
T ss_pred CCCHHHHHHHHHHHhCccccC----------ccCcEEEECCCc
Confidence 789999999999998764321 344888888764
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=183.07 Aligned_cols=227 Identities=15% Similarity=0.072 Sum_probs=158.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+....... . . ..++.++.+|++|.+++.++++.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~----~-~-~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA----S-L-GERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----H-h-CCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999997543222111 1 1 346889999999999998888765
Q ss_pred ---CccEEEEcccccCch---hhccChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR---YAMQNPNSYVESNIAGFVNLLETCKSS--DPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~---~~~~~~~~~~~~N~~g~~~ll~a~~~~--~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||..... ...++.+..+++|+.++.++++++... ....+||++||.+.+...
T Consensus 77 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------ 144 (261)
T PRK08265 77 RFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQ------------ 144 (261)
T ss_pred HhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC------------
Confidence 689999999974321 123344678999999998888776542 122389999996553211
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC--CCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP--DMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.....|+.+|.+.+.+++.++.++ |+++++|+||.+.++-... .... .....+.. .. ....-+
T Consensus 145 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~-~~~~~~~~--~~---------~p~~r~ 212 (261)
T PRK08265 145 TGRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDR-AKADRVAA--PF---------HLLGRV 212 (261)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccch-hHHHHhhc--cc---------CCCCCc
Confidence 234679999999999999998764 8999999999987763210 0000 00001100 00 011125
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+|+|++++.++...... ..|+++.+.+|.
T Consensus 213 ~~p~dva~~~~~l~s~~~~~----------~tG~~i~vdgg~ 244 (261)
T PRK08265 213 GDPEEVAQVVAFLCSDAASF----------VTGADYAVDGGY 244 (261)
T ss_pred cCHHHHHHHHHHHcCccccC----------ccCcEEEECCCe
Confidence 67899999999998754322 344788887663
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=179.01 Aligned_cols=228 Identities=15% Similarity=0.126 Sum_probs=158.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||.+++++|+++|++|++++|+.+........... ....+.++++|++|.++++++++++
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVA---AGGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999965433322222111 1245788999999999998887764
Q ss_pred ---CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+|||+||.... ....++.+..+++|+.++.++++++ ++.+.+ ++|++||...+..
T Consensus 82 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~--------- 151 (252)
T PRK07035 82 RHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGG-SIVNVASVNGVSP--------- 151 (252)
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCc-EEEEECchhhcCC---------
Confidence 57999999996421 1122234578999999988777665 444433 8999998654331
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
..+...|+.||++.+.+++.++.++ |+++++|+||.|..+..........+........+ ..
T Consensus 152 ---~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------~~ 216 (252)
T PRK07035 152 ---GDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHIP------------LR 216 (252)
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccCC------------CC
Confidence 1345789999999999999998765 89999999999977632211000112222222111 11
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
.+...+|+|++++.++...... ..|+++.+.+|
T Consensus 217 ~~~~~~~va~~~~~l~~~~~~~----------~~g~~~~~dgg 249 (252)
T PRK07035 217 RHAEPSEMAGAVLYLASDASSY----------TTGECLNVDGG 249 (252)
T ss_pred CcCCHHHHHHHHHHHhCccccC----------ccCCEEEeCCC
Confidence 2567899999999988765432 33477877654
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=179.38 Aligned_cols=225 Identities=15% Similarity=0.117 Sum_probs=161.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++.+|++|||||+|+||.++++.|+++|++|++++|+.+.. ... .......+.++.+|++|.+++.+++++.
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~-----~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 85 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA-----EVA-AQLLGGNAKGLVCDVSDSQSVEAAVAAVIS 85 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-----HHH-HHhhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999965321 111 1112345779999999999999888765
Q ss_pred ---CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||....... ..+.+..+++|+.++.++++++.. .+. ++||++||.......
T Consensus 86 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~--------- 155 (255)
T PRK06841 86 AFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGG-GKIVNLASQAGVVAL--------- 155 (255)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCC-ceEEEEcchhhccCC---------
Confidence 67999999998543211 223356899999999999888754 233 489999996543211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+...... .......+....+ ...
T Consensus 156 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~-~~~~~~~~~~~~~------------~~~ 219 (255)
T PRK06841 156 ---ERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAW-AGEKGERAKKLIP------------AGR 219 (255)
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCccccccc-chhHHHHHHhcCC------------CCC
Confidence 334689999999999999998764 899999999999887432110 0011111111111 123
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+.+++|+|++++.++...... ..|+++.+.+|.
T Consensus 220 ~~~~~~va~~~~~l~~~~~~~----------~~G~~i~~dgg~ 252 (255)
T PRK06841 220 FAYPEEIAAAALFLASDAAAM----------ITGENLVIDGGY 252 (255)
T ss_pred CcCHHHHHHHHHHHcCccccC----------ccCCEEEECCCc
Confidence 789999999999998765432 344788887764
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-21 Score=181.25 Aligned_cols=232 Identities=12% Similarity=0.081 Sum_probs=161.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+..+......... ....++.++.+|++|.+++.++++..
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARD-VAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-cCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999765443332222211 12346889999999999998888754
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||..... ...++.+..+++|+.++.++++++.. .+. .+||++||...+...
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 152 (260)
T PRK07063 83 AFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGR-GSIVNIASTHAFKII--------- 152 (260)
T ss_pred HhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCC-eEEEEECChhhccCC---------
Confidence 679999999975321 12234467899999999888777643 333 389999997654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC----CcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD----MAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
.....|+.+|++.+.+++.++.++ |+++++|+||.|-.+..... ..............+.
T Consensus 153 ---~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 219 (260)
T PRK07063 153 ---PGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQPM---------- 219 (260)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCCC----------
Confidence 334679999999999999998775 79999999999876632100 0000011111111110
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
.-+...+|+|.+++.++...... ..|+.+.+.+|..
T Consensus 220 --~r~~~~~~va~~~~fl~s~~~~~----------itG~~i~vdgg~~ 255 (260)
T PRK07063 220 --KRIGRPEEVAMTAVFLASDEAPF----------INATCITIDGGRS 255 (260)
T ss_pred --CCCCCHHHHHHHHHHHcCccccc----------cCCcEEEECCCee
Confidence 11557899999999988765432 3447787776643
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=180.60 Aligned_cols=228 Identities=13% Similarity=0.048 Sum_probs=159.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+..+........ ...++.++.+|++|.+++.++++.+
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA---AGRRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999975433322221111 1346889999999999998888754
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh-----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS-----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~-----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+|||+||...... ..++.+..+++|+.++.++++++.. .+. .+||++||......
T Consensus 84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-g~iv~~sS~~~~~~--------- 153 (263)
T PRK07814 84 AFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGG-GSVINISSTMGRLA--------- 153 (263)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCC-eEEEEEccccccCC---------
Confidence 6799999999743321 2234567899999999999998864 233 38999999544321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|+++|.+.+.+++.++.+. ++++++|+||.+..+....-..-..+...+....+ ...
T Consensus 154 ---~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 218 (263)
T PRK07814 154 ---GRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAANDELRAPMEKATP------------LRR 218 (263)
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcCC------------CCC
Confidence 1446789999999999999998765 68999999999876532110000112112211111 112
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
....+|+|++++.++...... ..++.+.+.++
T Consensus 219 ~~~~~~va~~~~~l~~~~~~~----------~~g~~~~~~~~ 250 (263)
T PRK07814 219 LGDPEDIAAAAVYLASPAGSY----------LTGKTLEVDGG 250 (263)
T ss_pred CcCHHHHHHHHHHHcCccccC----------cCCCEEEECCC
Confidence 457899999999988654321 23467777654
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=179.55 Aligned_cols=229 Identities=14% Similarity=0.080 Sum_probs=160.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+..+........ ...++..+.+|++|.+++.+++++.
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGT---SGGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999976543332222211 1246789999999999998888754
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.++..+++++.. .+...++|++||.+..-..
T Consensus 83 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~--------- 153 (253)
T PRK05867 83 ELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIIN--------- 153 (253)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCC---------
Confidence 6899999999754321 1223356889999999888887643 2222379999886542110
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.......|+.+|++.+.+++.++.++ |+++++|+||.|-.+..... ...........+ . ..
T Consensus 154 -~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~---~~~~~~~~~~~~--~----------~r 217 (253)
T PRK05867 154 -VPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPY---TEYQPLWEPKIP--L----------GR 217 (253)
T ss_pred -CCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccc---hHHHHHHHhcCC--C----------CC
Confidence 00224679999999999999998764 89999999999987743211 111122222111 1 12
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+...+|+|++++.++...... ..|+++.+.+|.
T Consensus 218 ~~~p~~va~~~~~L~s~~~~~----------~tG~~i~vdgG~ 250 (253)
T PRK05867 218 LGRPEELAGLYLYLASEASSY----------MTGSDIVIDGGY 250 (253)
T ss_pred CcCHHHHHHHHHHHcCcccCC----------cCCCeEEECCCc
Confidence 667899999999988754432 445788887764
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=179.88 Aligned_cols=221 Identities=14% Similarity=0.096 Sum_probs=156.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||++++++|+++|++|++++|+... ..++.++.+|++|+++++++++.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~--------------~~~~~~~~~D~~~~~~i~~~~~~~~~ 68 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS--------------YNDVDYFKVDVSNKEQVIKGIDYVIS 68 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc--------------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999985431 126789999999999998888754
Q ss_pred ---CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||....... .++.+..+++|+.|+.++++++.+ .+. ++||++||...+..
T Consensus 69 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~---------- 137 (258)
T PRK06398 69 KYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDK-GVIINIASVQSFAV---------- 137 (258)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-eEEEEeCcchhccC----------
Confidence 58999999997543221 222356789999999888777643 333 48999999776642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCC------CcHHHHHHHHHcCCceeEEecCCCC
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPD------MAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..+...|+.+|++.+.+++.++.++ ++++++|+||.+..+..... .....+...... + ...
T Consensus 138 --~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~ 206 (258)
T PRK06398 138 --TRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIRE------W---GEM 206 (258)
T ss_pred --CCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHh------h---hhc
Confidence 1456789999999999999998875 49999999999877632100 000000000000 0 000
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.....+...+|+|++++.++...... ..|+++.+.+|.
T Consensus 207 ~~~~~~~~p~eva~~~~~l~s~~~~~----------~~G~~i~~dgg~ 244 (258)
T PRK06398 207 HPMKRVGKPEEVAYVVAFLASDLASF----------ITGECVTVDGGL 244 (258)
T ss_pred CCcCCCcCHHHHHHHHHHHcCcccCC----------CCCcEEEECCcc
Confidence 11123667899999999888654321 334778777764
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=181.03 Aligned_cols=228 Identities=18% Similarity=0.117 Sum_probs=159.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|++|||||+|+||+.++++|+++|++|++++|+. .. .....+.++++|++|.+++.++++++
T Consensus 5 ~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (252)
T PRK08220 5 DFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LT---QEDYPFATFVLDVSDAAAVAQVCQRLLA 72 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hh---hcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999853 01 11346889999999999999988764
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.++.++++++.. .+.+ +||++||......
T Consensus 73 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g-~iv~~ss~~~~~~---------- 141 (252)
T PRK08220 73 ETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSG-AIVTVGSNAAHVP---------- 141 (252)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-EEEEECCchhccC----------
Confidence 4799999999854321 2334567899999999999888753 3333 8999999755321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|+.+|.+.+.+++.++++ .|+++++++||.++++....-............+..... ........
T Consensus 142 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 215 (252)
T PRK08220 142 --RIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQF----KLGIPLGK 215 (252)
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHH----hhcCCCcc
Confidence 134578999999999999999876 589999999999999843210000000000000000000 00111234
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+++++|+|++++.++...... ..++++.+.+|.
T Consensus 216 ~~~~~dva~~~~~l~~~~~~~----------~~g~~i~~~gg~ 248 (252)
T PRK08220 216 IARPQEIANAVLFLASDLASH----------ITLQDIVVDGGA 248 (252)
T ss_pred cCCHHHHHHHHHHHhcchhcC----------ccCcEEEECCCe
Confidence 889999999999988654322 334677777653
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=179.18 Aligned_cols=226 Identities=14% Similarity=0.092 Sum_probs=158.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||+++++.|+++|++|++.++...... ..... .. ..++.++++|++|.+++.+++++.
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~---~~~~~-~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAA---EALAD-EL-GDRAIALQADVTDREQVQAMFATATE 76 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHH---HHHHH-Hh-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999999999999998766432111 11111 11 246889999999999999888764
Q ss_pred ----CccEEEEcccccCc----------hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCC
Q 042406 154 ----AFTHVMHLAAQAGV----------RYAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKK 215 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~----------~~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~ 215 (424)
++|+||||||.... ....++.+..+++|+.++.++++++.. .+. .+||++||.....
T Consensus 77 ~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~iss~~~~~---- 151 (253)
T PRK08642 77 HFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGF-GRIINIGTNLFQN---- 151 (253)
T ss_pred HhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCC-eEEEEECCccccC----
Confidence 27999999986311 111223456899999999999888753 333 3899999854322
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCC
Q 042406 216 VPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 216 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
+..+...|+.+|.+.+.+++.+++++ |+++++|+||.+..+...... .......+... .++
T Consensus 152 --------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~-~~~~~~~~~~~--~~~----- 215 (253)
T PRK08642 152 --------PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAAT-PDEVFDLIAAT--TPL----- 215 (253)
T ss_pred --------CCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccC-CHHHHHHHHhc--CCc-----
Confidence 11455789999999999999998774 799999999999775322111 11222222221 111
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+.+.+|++.++..++...... ..|+.+.+.+|.
T Consensus 216 -----~~~~~~~~va~~~~~l~~~~~~~----------~~G~~~~vdgg~ 250 (253)
T PRK08642 216 -----RKVTTPQEFADAVLFFASPWARA----------VTGQNLVVDGGL 250 (253)
T ss_pred -----CCCCCHHHHHHHHHHHcCchhcC----------ccCCEEEeCCCe
Confidence 23788999999999998765432 445788887763
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=179.45 Aligned_cols=227 Identities=14% Similarity=0.139 Sum_probs=159.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+.+|+||||||+|+||.++++.|+++|++|++++|+ +..+....... . ...++.++.+|++|.+++.++++++
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~-~--~~~~~~~~~~D~~~~~~i~~~~~~~~~ 87 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIE-K--EGRKVTFVQVDLTKPESAEKVVKEALE 87 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHH-h--cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999996 22222111111 1 1346889999999999999888865
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||...... ..++.+..+++|+.++.++++++. +.+.+ ++|++||...+...
T Consensus 88 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 157 (258)
T PRK06935 88 EFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSG-KIINIASMLSFQGG--------- 157 (258)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCe-EEEEECCHHhccCC---------
Confidence 5799999999754221 122345789999999877776554 44433 89999998765421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.....|+.+|.+.+.+++.+++++ |+++++|+||.|..+....-.........+....+ ..-
T Consensus 158 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 222 (258)
T PRK06935 158 ---KFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKRIP------------AGR 222 (258)
T ss_pred ---CCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHhcCC------------CCC
Confidence 234689999999999999998765 89999999999987743210000111111111111 112
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
+...+|++.+++.++...... ..|+++.+.+|
T Consensus 223 ~~~~~dva~~~~~l~s~~~~~----------~~G~~i~~dgg 254 (258)
T PRK06935 223 WGEPDDLMGAAVFLASRASDY----------VNGHILAVDGG 254 (258)
T ss_pred CCCHHHHHHHHHHHcChhhcC----------CCCCEEEECCC
Confidence 677899999999888654432 34478887765
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=175.70 Aligned_cols=183 Identities=26% Similarity=0.346 Sum_probs=142.3
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEEc
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHL 161 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~~ 161 (424)
|+|+||||++|+.++++|+++|++|+++.|+.++... ..+++++.+|+.|.+++.++++++ |+||++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-----------~~~~~~~~~d~~d~~~~~~al~~~--d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-----------SPGVEIIQGDLFDPDSVKAALKGA--DAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-----------CTTEEEEESCTTCHHHHHHHHTTS--SEEEEC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-----------ccccccceeeehhhhhhhhhhhhc--chhhhh
Confidence 7999999999999999999999999999997543221 579999999999999999999977 999999
Q ss_pred ccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 042406 162 AAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAI 241 (424)
Q Consensus 162 Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~ 241 (424)
++.... +...+.++++++++++++ ++|++||.++|+........... .....|...|..+|.+
T Consensus 68 ~~~~~~-------------~~~~~~~~~~a~~~~~~~-~~v~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~e~~ 130 (183)
T PF13460_consen 68 AGPPPK-------------DVDAAKNIIEAAKKAGVK-RVVYLSSAGVYRDPPGLFSDEDK---PIFPEYARDKREAEEA 130 (183)
T ss_dssp CHSTTT-------------HHHHHHHHHHHHHHTTSS-EEEEEEETTGTTTCTSEEEGGTC---GGGHHHHHHHHHHHHH
T ss_pred hhhhcc-------------cccccccccccccccccc-cceeeeccccCCCCCcccccccc---cchhhhHHHHHHHHHH
Confidence 975331 167788999999999976 99999999999854332111111 1125688888888877
Q ss_pred HHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhh
Q 042406 242 AHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316 (424)
Q Consensus 242 ~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 316 (424)
++ ..+++++++||+.+||+.... ..++. ..+....++|+++|+|++++.++++
T Consensus 131 ~~----~~~~~~~ivrp~~~~~~~~~~----------------~~~~~--~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 131 LR----ESGLNWTIVRPGWIYGNPSRS----------------YRLIK--EGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp HH----HSTSEEEEEEESEEEBTTSSS----------------EEEES--STSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred HH----hcCCCEEEEECcEeEeCCCcc----------------eeEEe--ccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 74 349999999999999985321 11111 1345556899999999999998864
|
... |
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=181.33 Aligned_cols=234 Identities=17% Similarity=0.118 Sum_probs=162.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++++++||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|.+++.+++++.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRA---LQPRAEFVQVDLTDDAQCRDAVEQTVA 79 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999976543 21111111 2346899999999999999888764
Q ss_pred ---CccEEEEcccccCch---hhccChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR---YAMQNPNSYVESNIAGFVNLLETCKS---SDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~---~~~~~~~~~~~~N~~g~~~ll~a~~~---~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||..... ...++.+..+++|+.++.++.+++.+ ... ++||++||...+..
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~iv~~ss~~~~~~------------ 146 (258)
T PRK08628 80 KFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASR-GAIVNISSKTALTG------------ 146 (258)
T ss_pred hcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccC-cEEEEECCHHhccC------------
Confidence 679999999964321 11133467899999999888887653 222 38999999665432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC--C--cHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPD--M--AYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
..+...|+.||++.+.+++.++.+ .+++++.|+||.|++|..... . ........+... .+. +
T Consensus 147 ~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--~~~------~--- 215 (258)
T PRK08628 147 QGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAK--IPL------G--- 215 (258)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhc--CCc------c---
Confidence 134578999999999999999865 389999999999999742110 0 000011111111 111 0
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHH
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSR 348 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e 348 (424)
..++..+|+|++++.++...... ..|+.+.+.++. ..+++
T Consensus 216 ~~~~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~gg~-~~~~~ 255 (258)
T PRK08628 216 HRMTTAEEIADTAVFLLSERSSH----------TTGQWLFVDGGY-VHLDR 255 (258)
T ss_pred ccCCCHHHHHHHHHHHhChhhcc----------ccCceEEecCCc-ccccc
Confidence 13678899999999988775321 234778776654 44443
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=181.47 Aligned_cols=228 Identities=15% Similarity=0.145 Sum_probs=159.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||+++++.|+++|++|++++|+.+........... ...++.++++|++|.+++.++++..
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKA---AGGEALAVKADVLDKESLEQARQQILE 83 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999975433222221111 1246889999999999998887753
Q ss_pred ---CccEEEEcccccCchh-------------------hccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCC
Q 042406 154 ---AFTHVMHLAAQAGVRY-------------------AMQNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSS 207 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~-------------------~~~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~ 207 (424)
++|+||||||...... ..++.+..+++|+.++..++++ +++.+. .+||++||.
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~ii~isS~ 162 (278)
T PRK08277 84 DFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKG-GNIINISSM 162 (278)
T ss_pred HcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEEccc
Confidence 6799999999643211 1223457899999998766554 444443 389999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC-----CCcHHHHHHHH
Q 042406 208 SVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP-----DMAYFFFTRDI 279 (424)
Q Consensus 208 ~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~-----~~~~~~~~~~~ 279 (424)
..+... .+...|+.+|++.+.+++.++.++ |+++++|+||.|.++.... +.........+
T Consensus 163 ~~~~~~------------~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~ 230 (278)
T PRK08277 163 NAFTPL------------TKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKI 230 (278)
T ss_pred hhcCCC------------CCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHH
Confidence 776521 345789999999999999998876 7999999999999874321 00001111111
Q ss_pred HcCCceeEEecCCCCccccccccHHHHHHHHHHHhhh-ccccCCCCCCCCCCCCcceEEcCCC
Q 042406 280 IRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT-AKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
....+ ..-+...+|+|++++.++.. .... ..|.++.+.+|
T Consensus 231 ~~~~p------------~~r~~~~~dva~~~~~l~s~~~~~~----------~tG~~i~vdgG 271 (278)
T PRK08277 231 LAHTP------------MGRFGKPEELLGTLLWLADEKASSF----------VTGVVLPVDGG 271 (278)
T ss_pred hccCC------------ccCCCCHHHHHHHHHHHcCccccCC----------cCCCEEEECCC
Confidence 11111 11266789999999988775 3321 34477888765
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=182.34 Aligned_cols=231 Identities=13% Similarity=0.085 Sum_probs=157.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|++|||||+|+||+++++.|+++|++|++++|+ +........... ...++.++.+|++|.+++.++++.+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKS---NGGKAKAYHVDISDEQQVKDFASEIKE 78 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHh---cCCeEEEEEeecCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999997 433332222211 1346889999999999998888764
Q ss_pred ---CccEEEEcccccCc-hh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-RY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||.... .. ..+..+..+++|+.++..+++++ ++.+ .+||++||...+...
T Consensus 79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~-------- 148 (272)
T PRK08589 79 QFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG--GSIINTSSFSGQAAD-------- 148 (272)
T ss_pred HcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEeCchhhcCCC--------
Confidence 57999999998532 11 11223568899999987666654 3333 389999997665421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC--CcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD--MAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.....|+.||++.+.+++.++.++ |+++++|+||.|..+....- .....+......... .. ..
T Consensus 149 ----~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~ 216 (272)
T PRK08589 149 ----LYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQK-WM-------TP 216 (272)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhhh-cc-------CC
Confidence 234789999999999999998765 79999999999987632210 000000000000000 00 00
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..-+...+|++++++.++...... ..|+.+.+.++.
T Consensus 217 ~~~~~~~~~va~~~~~l~s~~~~~----------~~G~~i~vdgg~ 252 (272)
T PRK08589 217 LGRLGKPEEVAKLVVFLASDDSSF----------ITGETIRIDGGV 252 (272)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcC----------cCCCEEEECCCc
Confidence 112567899999999988754422 344778887664
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-21 Score=177.60 Aligned_cols=226 Identities=13% Similarity=0.108 Sum_probs=158.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+++||||+|+||+++++.|+++|++|+++.|+............. ....++.++.+|++|.+++.+++++.
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIG--ALGGKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999998888865422111111111 12356889999999999998888754
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCC-cccCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSS-SVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~-~vyg~~~~~~~~e~~ 222 (424)
++|+|||+||...... ..+..+..+.+|+.++.++++++... +. ++||++||. ++++.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~iss~~~~~~~---------- 149 (248)
T PRK05557 81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRS-GRIINISSVVGLMGN---------- 149 (248)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-eEEEEEcccccCcCC----------
Confidence 5799999999754321 12234568899999999998887653 33 379999985 34442
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.....|+.+|.+.+.+++.++++. ++++++++||.+.++.... ....+........+ ...
T Consensus 150 ---~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~--~~~~~~~~~~~~~~------------~~~ 212 (248)
T PRK05557 150 ---PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDA--LPEDVKEAILAQIP------------LGR 212 (248)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccc--cChHHHHHHHhcCC------------CCC
Confidence 235789999999999998887543 8999999999987653321 11223333322221 123
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+.+++|++.++..++...... ..++.|++.++-
T Consensus 213 ~~~~~~va~~~~~l~~~~~~~----------~~g~~~~i~~~~ 245 (248)
T PRK05557 213 LGQPEEIASAVAFLASDEAAY----------ITGQTLHVNGGM 245 (248)
T ss_pred CcCHHHHHHHHHHHcCcccCC----------ccccEEEecCCc
Confidence 678999999998877653211 344899998753
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=180.42 Aligned_cols=235 Identities=14% Similarity=0.106 Sum_probs=156.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhh-ccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLL-ERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++|+++||||+|+||.++++.|+++|++|++++++................ ...++.++++|++|.+++.++++.+
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999988887654322222222211111 1346889999999999999888764
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||..... ...++.+..+++|+.++.++++++.... ...++++++|+......
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~------------ 153 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT------------ 153 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC------------
Confidence 689999999974321 2233456789999999999999886542 11256665333222110
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.....|+.||++.|.+++.+++++ |+++++++||.+.++...+.... .. ......... ........+.+
T Consensus 154 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~-~~---~~~~~~~~~----~~~~~~~~~~~ 225 (257)
T PRK12744 154 PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGA-EA---VAYHKTAAA----LSPFSKTGLTD 225 (257)
T ss_pred CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhcccccc-ch---hhccccccc----ccccccCCCCC
Confidence 234789999999999999998875 69999999999987643211100 00 000000000 01111124788
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
++|+|.++..++..... ..|+++++.+|.
T Consensus 226 ~~dva~~~~~l~~~~~~-----------~~g~~~~~~gg~ 254 (257)
T PRK12744 226 IEDIVPFIRFLVTDGWW-----------ITGQTILINGGY 254 (257)
T ss_pred HHHHHHHHHHhhcccce-----------eecceEeecCCc
Confidence 99999999999884221 234789988764
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=184.10 Aligned_cols=225 Identities=14% Similarity=0.048 Sum_probs=150.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+|+||||+|+||.+++++|+++|++|++++|+.+......... .++.++.+|++|.++++++++.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l-------~~v~~~~~Dl~d~~~v~~~~~~~~~ 95 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI-------DGVEVVMLDLADLESVRAFAERFLD 95 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-------hhCeEEEccCCCHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999754332221111 24789999999999999888653
Q ss_pred ---CccEEEEcccccCch--hhccChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCCcccCC-CCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR--YAMQNPNSYVESNIAGFVNLLE----TCKSSDPQPAIVWASSSSVYGV-NKKVPFSEKDR 223 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~--~~~~~~~~~~~~N~~g~~~ll~----a~~~~~~~~~~v~~SS~~vyg~-~~~~~~~e~~~ 223 (424)
++|+||||||..... ...++.+..+++|+.|+.++++ .+++.+. .+||++||.+.... ..........
T Consensus 96 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~-~~iV~vSS~~~~~~~~~~~~~~~~~- 173 (315)
T PRK06196 96 SGRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAG-ARVVALSSAGHRRSPIRWDDPHFTR- 173 (315)
T ss_pred cCCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CeEEEECCHHhccCCCCccccCccC-
Confidence 579999999975432 1223457789999999665555 4455543 38999999754321 1111111111
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
+..+...|+.||++.+.+++.+++++ |+++++|+||.|.++......................+ ...+
T Consensus 174 ~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 244 (315)
T PRK06196 174 GYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGNPI---------DPGF 244 (315)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhhhh---------hhhc
Confidence 22445789999999999999987654 89999999999999854321100000000000000000 0024
Q ss_pred ccHHHHHHHHHHHhhhcc
Q 042406 301 TYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~ 318 (424)
...+|+|.+++.++..+.
T Consensus 245 ~~~~~~a~~~~~l~~~~~ 262 (315)
T PRK06196 245 KTPAQGAATQVWAATSPQ 262 (315)
T ss_pred CCHhHHHHHHHHHhcCCc
Confidence 568999999998886543
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-21 Score=177.57 Aligned_cols=227 Identities=15% Similarity=0.091 Sum_probs=156.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+++||||+|+||.++++.|+++|++|++++|+.+........... ...++.++++|++|++++.++++..
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK---DGGKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999975443332222211 1346889999999999998888765
Q ss_pred CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||....... .++.+..+++|+.++..+++++.+ .+...+||++||...+...
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------ 146 (256)
T PRK08643 79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGN------------ 146 (256)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCC------------
Confidence 57999999997543211 223356899999998777666543 2323489999996543211
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC---------CcHHHHHHHHHcCCceeEEecCCC
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD---------MAYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
.....|+.+|.+.+.+++.++.++ |+++++|+||.+.+|..... .........+... +
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------- 216 (256)
T PRK08643 147 PELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKD--I-------- 216 (256)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhcc--C--------
Confidence 235789999999999999988753 89999999999988732100 0000000011110 0
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...-+...+|+|.++..++...... .+|+++.+.+|.
T Consensus 217 --~~~~~~~~~~va~~~~~L~~~~~~~----------~~G~~i~vdgg~ 253 (256)
T PRK08643 217 --TLGRLSEPEDVANCVSFLAGPDSDY----------ITGQTIIVDGGM 253 (256)
T ss_pred --CCCCCcCHHHHHHHHHHHhCccccC----------ccCcEEEeCCCe
Confidence 0112567899999999888665432 344788887664
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=179.24 Aligned_cols=210 Identities=15% Similarity=0.107 Sum_probs=151.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+++||||||+|+||.++++.|+++|++|++++|+............. ...++.++.+|++|.+++.++++.+
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELAD---HGGEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999975433222111111 2346889999999999999888765
Q ss_pred CccEEEEcccccCchhhcc-----ChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRYAMQ-----NPNSYVESNIAGFVNLLETCKSS---DPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~-----~~~~~~~~N~~g~~~ll~a~~~~---~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||........+ .....+++|+.++.++++.+... +. +++|++||...+...
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~iv~~sS~~~~~~~------------ 144 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASR-GQIVVVSSLAGLTGV------------ 144 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CEEEEEecccccCCC------------
Confidence 6799999999755432222 23567999999999999887532 22 389999998776521
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.+...|+.+|.+.+.+++.++.+ .++++++++||.+.++.... ... ..+.+... .+.....+++
T Consensus 145 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~------~~~--~~~~~~~~-----~~~~~~~~~~ 211 (263)
T PRK06181 145 PTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKR------ALD--GDGKPLGK-----SPMQESKIMS 211 (263)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchh------hcc--cccccccc-----ccccccCCCC
Confidence 34578999999999999888754 38999999999998763221 000 01111111 1122236899
Q ss_pred HHHHHHHHHHHhhhc
Q 042406 303 IDDIVKGCLAGLDTA 317 (424)
Q Consensus 303 v~Dva~a~~~~~~~~ 317 (424)
++|+|++++.+++..
T Consensus 212 ~~dva~~i~~~~~~~ 226 (263)
T PRK06181 212 AEECAEAILPAIARR 226 (263)
T ss_pred HHHHHHHHHHHhhCC
Confidence 999999999999754
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-21 Score=177.18 Aligned_cols=227 Identities=11% Similarity=0.092 Sum_probs=157.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+++||||+|+||+++++.|+++|++|++++|+.+........... ...++.++++|++|.++++++++.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQ---FPGQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999975443332222211 1246889999999999999888765
Q ss_pred CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||..... ...++.+..+++|+.++.++++++.+ .+...+||++||...+.. .
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~------------~ 145 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDA------------G 145 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccC------------C
Confidence 679999999864321 12223467899999999999888743 222348999998754321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCCCCCCCc-HHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY----GLSITGLRFFTVYGPWGRPDMA-YFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~----~i~~~~vrp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.....|+.+|.+.+.+++.++.++ |+++++|+||.+.++....... .......+.+..+. .-+
T Consensus 146 ~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 213 (252)
T PRK07677 146 PGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVPL------------GRL 213 (252)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCCC------------CCC
Confidence 234679999999999999987663 8999999999998543211100 11222233222111 126
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+|+++++..++...... ..|+.+.+.+|.
T Consensus 214 ~~~~~va~~~~~l~~~~~~~----------~~g~~~~~~gg~ 245 (252)
T PRK07677 214 GTPEEIAGLAYFLLSDEAAY----------INGTCITMDGGQ 245 (252)
T ss_pred CCHHHHHHHHHHHcCccccc----------cCCCEEEECCCe
Confidence 67899999998887654321 344677777653
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-21 Score=178.65 Aligned_cols=231 Identities=11% Similarity=0.049 Sum_probs=154.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc-hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY-YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
..+++|+++||||+++||++++++|+++|++|++++|.... ......... ......+.++.+|++|+++++++++.+
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~ 81 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLE--QKYGIKAKAYPLNILEPETYKELFKKI 81 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH--HhcCCceEEEEcCCCCHHHHHHHHHHH
Confidence 35788999999999999999999999999999988764322 111111111 112347889999999999999888765
Q ss_pred -----CccEEEEcccccCc-------hh---hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCC
Q 042406 154 -----AFTHVMHLAAQAGV-------RY---AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNK 214 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~-------~~---~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~ 214 (424)
++|+||||||.... .. ...+....+++|+.+...+.+.+ ++.+. ++||++||.+.+..
T Consensus 82 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~-- 158 (260)
T PRK08416 82 DEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGG-GSIISLSSTGNLVY-- 158 (260)
T ss_pred HHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCC-EEEEEEeccccccC--
Confidence 58999999986421 11 11223457888888866655544 43333 38999999654321
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecC
Q 042406 215 KVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAP 291 (424)
Q Consensus 215 ~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
......|+.||++.+.+++.++.++ |+++++|+||.+-.+....-.-.......+....+.
T Consensus 159 ----------~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~------ 222 (260)
T PRK08416 159 ----------IENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELSPL------ 222 (260)
T ss_pred ----------CCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcCCC------
Confidence 1234679999999999999999875 899999999998765211000001111111111111
Q ss_pred CCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.-+...+|+|.+++.++...... ..|+.+.+.+|.
T Consensus 223 ------~r~~~p~~va~~~~~l~~~~~~~----------~~G~~i~vdgg~ 257 (260)
T PRK08416 223 ------NRMGQPEDLAGACLFLCSEKASW----------LTGQTIVVDGGT 257 (260)
T ss_pred ------CCCCCHHHHHHHHHHHcChhhhc----------ccCcEEEEcCCe
Confidence 12667899999999988654332 334778776653
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-21 Score=176.67 Aligned_cols=229 Identities=15% Similarity=0.107 Sum_probs=161.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+........... ...++.++.+|++|.+++.++++++
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~i~~~~~~~~~ 80 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIRE---AGGEALFVACDVTRDAEVKALVEQTIA 80 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999976543332222211 2346899999999999998888765
Q ss_pred ---CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||..... ...++.+..+++|+.++.++++++ .+.+. .++|++||...+...
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~sS~~~~~~~-------- 151 (253)
T PRK06172 81 AYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGG-GAIVNTASVAGLGAA-------- 151 (253)
T ss_pred HhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEECchhhccCC--------
Confidence 679999999974321 123344678999999987766544 33443 389999998776531
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC-cHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM-AYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|-.+...... ........+....+ .
T Consensus 152 ----~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~------------~ 215 (253)
T PRK06172 152 ----PKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHP------------V 215 (253)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccCC------------C
Confidence 345789999999999999998775 799999999999776422100 00111111111111 1
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.-+...+|+++.++.++...... ..|+.+.+.+|.
T Consensus 216 ~~~~~p~~ia~~~~~l~~~~~~~----------~~G~~i~~dgg~ 250 (253)
T PRK06172 216 GRIGKVEEVASAVLYLCSDGASF----------TTGHALMVDGGA 250 (253)
T ss_pred CCccCHHHHHHHHHHHhCccccC----------cCCcEEEECCCc
Confidence 12567899999999988765322 344788887764
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=203.52 Aligned_cols=241 Identities=16% Similarity=0.137 Sum_probs=168.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
...+.+|+|+||||+|+||.++++.|+++|++|++++|+.+.......... ...++.++.+|++|.+++.++++..
T Consensus 417 ~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~----~~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 417 PKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELG----GPDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHh----ccCcEEEEEecCCCHHHHHHHHHHH
Confidence 344678999999999999999999999999999999997643322221111 1147889999999999998888754
Q ss_pred -----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||...... ...+.+..+++|+.|+.++++++. +.+...+||++||...+...
T Consensus 493 ~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~------- 565 (681)
T PRK08324 493 ALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPG------- 565 (681)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCC-------
Confidence 6899999999754321 122345689999999998876664 44432489999997665321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEecccc-CCCCCCCCcHHHHHHHHHcCCcee----EEecCC
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVY-GPWGRPDMAYFFFTRDIIRGKRIT----VYEAPD 292 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 292 (424)
.....|+.+|.+.+.+++.++.++ |+++++|+|+.|| +++....... .......+.... .+ .
T Consensus 566 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~--~~~~~~~g~~~~~~~~~~---~ 635 (681)
T PRK08324 566 -----PNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWI--EARAAAYGLSEEELEEFY---R 635 (681)
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhh--hhhhhhccCChHHHHHHH---H
Confidence 345789999999999999998765 6999999999998 5432211110 011111111110 11 2
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
.+...+.+++++|+|++++.++...... ..|++|++.+|....
T Consensus 636 ~~~~l~~~v~~~DvA~a~~~l~s~~~~~----------~tG~~i~vdgG~~~~ 678 (681)
T PRK08324 636 ARNLLKREVTPEDVAEAVVFLASGLLSK----------TTGAIITVDGGNAAA 678 (681)
T ss_pred hcCCcCCccCHHHHHHHHHHHhCccccC----------CcCCEEEECCCchhc
Confidence 3445667999999999999987532211 344899999886543
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=187.61 Aligned_cols=187 Identities=19% Similarity=0.147 Sum_probs=136.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
...+|+++||||+|+||.++++.|+++|++|++++|+.+.......... .....+.++.+|++|.++++++++..
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELG---IPPDSYTIIHIDLGDLDSVRRFVDDFRA 79 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---ccCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999997654333222221 12346889999999999999888763
Q ss_pred ---CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHHHh----cCC-CCeEEEecCCcccCCCC--C--C
Q 042406 154 ---AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETCKS----SDP-QPAIVWASSSSVYGVNK--K--V 216 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~-~~~~v~~SS~~vyg~~~--~--~ 216 (424)
++|+||||||+.... ...++.+..+++|+.|+.++++++.. .+. ..+||++||...+.... . .
T Consensus 80 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~ 159 (322)
T PRK07453 80 LGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPI 159 (322)
T ss_pred hCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCC
Confidence 479999999975321 12334577899999999888777654 322 13899999976643110 0 0
Q ss_pred --CCCC-----------------CCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCC
Q 042406 217 --PFSE-----------------KDRTDQPASLYAATKKAGEAIAHAYNHIY----GLSITGLRFFTVYGPW 265 (424)
Q Consensus 217 --~~~e-----------------~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~i~~~~vrp~~v~G~~ 265 (424)
+.+. +..+..+...|+.||++.+.+++++++++ |++++++|||.|++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 160 PAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred CCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 0000 01123566889999999999999988765 7999999999998643
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-21 Score=183.61 Aligned_cols=210 Identities=18% Similarity=0.146 Sum_probs=151.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+|+||||+|+||++++++|+++|++|++++|+.+..+........ ...++.++.+|++|.++++++++.+
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~---~g~~~~~v~~Dv~d~~~v~~~~~~~~~ 81 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRA---AGGEALAVVADVADAEAVQAAADRAEE 81 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH---cCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999975543332222211 2346889999999999999887754
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHH----HHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNL----LETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l----l~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||...... ..++.+..+++|+.|+.++ ++.+++.+.+ +||++||...+...
T Consensus 82 ~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g-~iV~isS~~~~~~~--------- 151 (334)
T PRK07109 82 ELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRG-AIIQVGSALAYRSI--------- 151 (334)
T ss_pred HCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEeCChhhccCC---------
Confidence 6899999999753221 2223456889998886654 4555555443 89999998887531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.....|+.+|++.+.+++.++.+. ++++++|+||.|.+|... . ........ ....
T Consensus 152 ---~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~------~-~~~~~~~~----------~~~~ 211 (334)
T PRK07109 152 ---PLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFD------W-ARSRLPVE----------PQPV 211 (334)
T ss_pred ---CcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhh------h-hhhhcccc----------ccCC
Confidence 335789999999999998887653 699999999999876221 0 11111100 0111
Q ss_pred cccccHHHHHHHHHHHhhhcc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~ 318 (424)
..+...+|+|++++.++.++.
T Consensus 212 ~~~~~pe~vA~~i~~~~~~~~ 232 (334)
T PRK07109 212 PPIYQPEVVADAILYAAEHPR 232 (334)
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 236789999999999998763
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=174.24 Aligned_cols=225 Identities=14% Similarity=0.044 Sum_probs=158.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
|+++||||+|+||+++++.|+++|++|++++|+... ..............++.++.+|++|.+++.++++.+ +
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 80 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGND--CAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGP 80 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHH--HHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 589999999999999999999999999999997531 111111111112346899999999999998888764 5
Q ss_pred ccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLE----TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~----a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|+|||+||..... ...++.+..+++|+.++.++++ .+++.+.+ +||++||...+... .
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~iss~~~~~~~------------~ 147 (245)
T PRK12824 81 VDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYG-RIINISSVNGLKGQ------------F 147 (245)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCe-EEEEECChhhccCC------------C
Confidence 89999999975421 1233446789999999888754 44555544 99999997766421 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
....|+.+|++.+.+++.++.+. ++++++++||.+.++....- .......+....+ ...+...
T Consensus 148 ~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~--~~~~~~~~~~~~~------------~~~~~~~ 213 (245)
T PRK12824 148 GQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQM--GPEVLQSIVNQIP------------MKRLGTP 213 (245)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhc--CHHHHHHHHhcCC------------CCCCCCH
Confidence 34679999999999999987643 89999999999988743211 1122222222221 1225568
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
+|+++++..++...... ..|+++++.+|..
T Consensus 214 ~~va~~~~~l~~~~~~~----------~~G~~~~~~~g~~ 243 (245)
T PRK12824 214 EEIAAAVAFLVSEAAGF----------ITGETISINGGLY 243 (245)
T ss_pred HHHHHHHHHHcCccccC----------ccCcEEEECCCee
Confidence 99999998887553221 3448999988753
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=175.53 Aligned_cols=225 Identities=12% Similarity=0.007 Sum_probs=156.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchh-hhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYE-TSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
+|+++||||+|+||.+++++|+++|++|+++.+...... ....... ....++.++.+|++|.+++++++++.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVR---SHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999998876443221 1111111 12346889999999999988887754
Q ss_pred -CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||...... ..++.+..+.+|+.++.++++++... +..++||++||..... +
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~------------~ 146 (256)
T PRK12743 79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT------------P 146 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC------------C
Confidence 5799999999754321 22334678999999999998877543 2224899999964321 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
..+...|+.+|.+.+.+++.++.++ |++++.|+||.++++...... ...........+ . ..+.
T Consensus 147 ~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~--~~~~~~~~~~~~--~----------~~~~ 212 (256)
T PRK12743 147 LPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD--SDVKPDSRPGIP--L----------GRPG 212 (256)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC--hHHHHHHHhcCC--C----------CCCC
Confidence 1456789999999999999988754 899999999999987432110 111111111111 1 1145
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 302 YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+.+|++++++.++...... ..|.++.+.++.
T Consensus 213 ~~~dva~~~~~l~~~~~~~----------~~G~~~~~dgg~ 243 (256)
T PRK12743 213 DTHEIASLVAWLCSEGASY----------TTGQSLIVDGGF 243 (256)
T ss_pred CHHHHHHHHHHHhCccccC----------cCCcEEEECCCc
Confidence 7899999999887654321 344788887764
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-20 Score=174.88 Aligned_cols=230 Identities=12% Similarity=0.057 Sum_probs=157.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhh-hHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET-SLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.+++|+++||||+|+||.++++.|+++|++|+++.|+...... ....... ...++.++.+|++|.+++.++++..
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~i~~~~~~~~ 80 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKK---AGGEAIAVKGDVTVESDVVNLIQTAV 80 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH---cCCeEEEEEecCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999999999998885432111 1111111 1346788999999999998887754
Q ss_pred ----CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHH----HHHHHhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNL----LETCKSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~l----l~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||....... .++.+..+++|+.++.++ ++.+++.+...++|++||...+.
T Consensus 81 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~---------- 150 (261)
T PRK08936 81 KEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQI---------- 150 (261)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccC----------
Confidence 67999999997543221 233456899999887655 44555555444899999965432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
+..+...|+.+|++.+.+.+.++.++ |+++++|+||.+.++........+.....+....+ ..
T Consensus 151 --~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~ 216 (261)
T PRK08936 151 --PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMIP------------MG 216 (261)
T ss_pred --CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcCC------------CC
Confidence 11445789999999999999987664 89999999999988743221111111122222111 11
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+...+|++++++.++...... ..|..+.+.++.
T Consensus 217 ~~~~~~~va~~~~~l~s~~~~~----------~~G~~i~~d~g~ 250 (261)
T PRK08936 217 YIGKPEEIAAVAAWLASSEASY----------VTGITLFADGGM 250 (261)
T ss_pred CCcCHHHHHHHHHHHcCcccCC----------ccCcEEEECCCc
Confidence 2667899999999988764432 333666666553
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=176.00 Aligned_cols=230 Identities=13% Similarity=0.081 Sum_probs=162.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.+++|+++||||+|+||..++++|+++|++ |++++|+.+.......... .....+.++.+|++|.+++.++++..
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELE---ALGAKAVFVQADLSDVEDCRRVVAAAD 79 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHH---hcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999998 9999996543322111111 12346788999999999999888764
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||...... ..++.+..+++|+.++.++++++.+ .+...++|++||...++..
T Consensus 80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~-------- 151 (260)
T PRK06198 80 EAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ-------- 151 (260)
T ss_pred HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC--------
Confidence 5799999999754221 1222356899999999998877744 2222489999998877532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC--C---CcHHHHHHHHHcCCceeEEecCCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP--D---MAYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
.....|+.+|.+.|.+++.++.++ +++++.++||.++++.... . .....+........
T Consensus 152 ----~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---------- 217 (260)
T PRK06198 152 ----PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQ---------- 217 (260)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccC----------
Confidence 235789999999999999988765 6999999999999885321 0 00111222221111
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
....+++.+|++++++.++...... ..|+++.+.++.
T Consensus 218 --~~~~~~~~~~~a~~~~~l~~~~~~~----------~~G~~~~~~~~~ 254 (260)
T PRK06198 218 --PFGRLLDPDEVARAVAFLLSDESGL----------MTGSVIDFDQSV 254 (260)
T ss_pred --CccCCcCHHHHHHHHHHHcChhhCC----------ccCceEeECCcc
Confidence 1223678999999999988654321 344788887654
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=172.88 Aligned_cols=215 Identities=15% Similarity=0.129 Sum_probs=153.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
.+|+++||||+|+||.+++++|+++|++|++++|+... . ....++.+|++|.+++.++++..
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~----------~----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 67 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID----------D----FPGELFACDLADIEQTAATLAQINEIH 67 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc----------c----cCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999996532 0 11257899999999888777643
Q ss_pred CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||...... ..++.+..+++|+.++.++.+++ ++.+.+ +||++||.+.|+.
T Consensus 68 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~------------- 133 (234)
T PRK07577 68 PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQG-RIVNICSRAIFGA------------- 133 (234)
T ss_pred CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEccccccCC-------------
Confidence 6799999999865422 12334568999999987775554 445554 8999999877653
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC-cHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM-AYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
.....|+.+|.+.+.+++.++.++ |+++++||||.+.++...... ........+....+. ....
T Consensus 134 ~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 201 (234)
T PRK07577 134 LDRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASIPM------------RRLG 201 (234)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcCCC------------CCCc
Confidence 234789999999999999887654 899999999999887432100 001111122221111 1144
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 302 YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+|+|++++.++..+... ..|+.+.+.++.
T Consensus 202 ~~~~~a~~~~~l~~~~~~~----------~~g~~~~~~g~~ 232 (234)
T PRK07577 202 TPEEVAAAIAFLLSDDAGF----------ITGQVLGVDGGG 232 (234)
T ss_pred CHHHHHHHHHHHhCcccCC----------ccceEEEecCCc
Confidence 6899999999998765321 234788887654
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=175.84 Aligned_cols=228 Identities=15% Similarity=0.123 Sum_probs=160.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||.+++++|+++|++|++++|+.+........... ...++.++++|++|.+++++++++.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRE---LGIEAHGYVCDVTDEDGVQAMVSQIEK 83 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999876544332222211 1246889999999999999988764
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCc-ccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSS-VYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~-vyg~~~~~~~~e~ 221 (424)
++|+||||||..... ...++.+..+++|+.++..+++++. +.+. .+||++||.. .++.
T Consensus 84 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 153 (265)
T PRK07097 84 EVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGH-GKIINICSMMSELGR--------- 153 (265)
T ss_pred hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC-cEEEEEcCccccCCC---------
Confidence 579999999986532 2223346789999999887766654 3443 3899999853 3331
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC------cHHHHHHHHHcCCceeEEecCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM------AYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
.+...|+.+|.+.+.+++.+++++ |++++.|+||.+.++...... ....+...+....+
T Consensus 154 ----~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 221 (265)
T PRK07097 154 ----ETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTP-------- 221 (265)
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCC--------
Confidence 345789999999999999998875 899999999999887432100 00001111111111
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+...+|+|.+++.++...... ..|+.+.+.++.
T Consensus 222 ----~~~~~~~~dva~~~~~l~~~~~~~----------~~g~~~~~~gg~ 257 (265)
T PRK07097 222 ----AARWGDPEDLAGPAVFLASDASNF----------VNGHILYVDGGI 257 (265)
T ss_pred ----ccCCcCHHHHHHHHHHHhCcccCC----------CCCCEEEECCCc
Confidence 112567899999999998764321 334677777664
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=175.12 Aligned_cols=226 Identities=12% Similarity=0.046 Sum_probs=156.3
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+++|+++||||+ ++||+.++++|+++|++|++.+|+. +..... .......+.++++|++|.++++++++.+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~-----~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSL-----QKLVDEEDLLVECDVASDESIERAFATI 77 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHH-----HhhccCceeEEeCCCCCHHHHHHHHHHH
Confidence 3678999999999 7999999999999999999999862 211111 1112246789999999999998887654
Q ss_pred -----CccEEEEcccccCc--------hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGV--------RYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||.... ....++.+..+++|+.++..+++++.... ...++|++||.+....
T Consensus 78 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~------- 150 (252)
T PRK06079 78 KERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERA------- 150 (252)
T ss_pred HHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCcccc-------
Confidence 58999999997532 11222346789999999888877765432 1238999998654321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
......|++||++.+.+++.++.++ |+++++|.||.|-.+..........+...+....+ .
T Consensus 151 -----~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p--~--------- 214 (252)
T PRK06079 151 -----IPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTV--D--------- 214 (252)
T ss_pred -----CCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCChHHHHHHHHhcCc--c---------
Confidence 1234689999999999999998764 89999999999987632110001122222222111 1
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
.-+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 215 -~r~~~pedva~~~~~l~s~~~~~----------itG~~i~vdgg 248 (252)
T PRK06079 215 -GVGVTIEEVGNTAAFLLSDLSTG----------VTGDIIYVDKG 248 (252)
T ss_pred -cCCCCHHHHHHHHHHHhCccccc----------ccccEEEeCCc
Confidence 12677899999999988664322 33477777665
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.4e-21 Score=178.31 Aligned_cols=199 Identities=16% Similarity=0.078 Sum_probs=147.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+++||||+|+||++++++|+++|++|++.+|+.+....... . . ..+.++.+|++|++++.++++.+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~----~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAA----E-L--GLVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----H-h--ccceEEEccCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999986543222111 1 1 25789999999999988877764
Q ss_pred --CccEEEEcccccCchhhc----cChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRYAM----QNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~~~----~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||........ ++.+..+++|+.|+.++++++ ++.+.+ +||++||.+.+...
T Consensus 76 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~---------- 144 (273)
T PRK07825 76 LGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRG-HVVNVASLAGKIPV---------- 144 (273)
T ss_pred cCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEcCccccCCC----------
Confidence 579999999986432222 223568999999987766654 445544 89999997665321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.....|+.||.+.+.+.+.+..+. |+++++|+||.+.++... +.. ......+
T Consensus 145 --~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~--------------~~~---------~~~~~~~ 199 (273)
T PRK07825 145 --PGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIA--------------GTG---------GAKGFKN 199 (273)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhc--------------ccc---------cccCCCC
Confidence 345789999999999888887654 899999999988654211 000 0111247
Q ss_pred ccHHHHHHHHHHHhhhcc
Q 042406 301 TYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~ 318 (424)
+.++|+|++++.++.++.
T Consensus 200 ~~~~~va~~~~~~l~~~~ 217 (273)
T PRK07825 200 VEPEDVAAAIVGTVAKPR 217 (273)
T ss_pred CCHHHHHHHHHHHHhCCC
Confidence 889999999999998754
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=174.71 Aligned_cols=226 Identities=15% Similarity=0.109 Sum_probs=152.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-eCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGL-DNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
+++++||||+|+||++++++|+++|++|+++ .|+.+...+...... ....++.++.+|++|.+++.++++++
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~ 77 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLIT---QAGGKAFVLQADISDENQVVAMFTAIDQHD 77 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHH---hCCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 3679999999999999999999999999875 454322221111111 11345788999999999999988865
Q ss_pred -CccEEEEcccccCchh-----hccChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY-----AMQNPNSYVESNIAGFVNLLETCKSS------DPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~-----~~~~~~~~~~~N~~g~~~ll~a~~~~------~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||...... ...+.+..+++|+.++.++++++... +...+||++||...+...
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~-------- 149 (247)
T PRK09730 78 EPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA-------- 149 (247)
T ss_pred CCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC--------
Confidence 5799999999753211 12233578999999998777665432 112379999997554321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
+ .....|+.+|.+.+.+++.++.++ +++++++|||.+|+|....... +.....+....+...
T Consensus 150 --~-~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------- 214 (247)
T PRK09730 150 --P-GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGE-PGRVDRVKSNIPMQR----------- 214 (247)
T ss_pred --C-CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCC-HHHHHHHHhcCCCCC-----------
Confidence 0 122469999999999999887654 8999999999999985432221 122223332222111
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
..+++|++++++.++...... ..|..|.+.++
T Consensus 215 -~~~~~dva~~~~~~~~~~~~~----------~~g~~~~~~g~ 246 (247)
T PRK09730 215 -GGQPEEVAQAIVWLLSDKASY----------VTGSFIDLAGG 246 (247)
T ss_pred -CcCHHHHHHHHHhhcChhhcC----------ccCcEEecCCC
Confidence 236899999999888654321 23367777664
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.3e-21 Score=174.00 Aligned_cols=221 Identities=15% Similarity=0.096 Sum_probs=157.7
Q ss_pred EEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-CccEEEEc
Q 042406 83 LVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-AFTHVMHL 161 (424)
Q Consensus 83 lItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~~d~vi~~ 161 (424)
+||||+|+||++++++|+++|++|++++|+.+......... ....+++++.+|++|.+++.++++.. ++|+|||+
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ 76 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARAL----GGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT 76 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH----hcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence 69999999999999999999999999999654322211111 11356889999999999999999875 46999999
Q ss_pred ccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 042406 162 AAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKA 237 (424)
Q Consensus 162 Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~ 237 (424)
||...... ..++.+..+++|+.++.+++++....+. ++||++||.+.+... .+.+.|+.+|.+
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-g~iv~~ss~~~~~~~------------~~~~~Y~~sK~a 143 (230)
T PRK07041 77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPG-GSLTFVSGFAAVRPS------------ASGVLQGAINAA 143 (230)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCC-eEEEEECchhhcCCC------------CcchHHHHHHHH
Confidence 99754321 2234567899999999999996655444 499999998877531 445789999999
Q ss_pred HHHHHHHHHHHh-CCcEEEEEeccccCCCCCC--CCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHh
Q 042406 238 GEAIAHAYNHIY-GLSITGLRFFTVYGPWGRP--DMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGL 314 (424)
Q Consensus 238 ~e~~~~~~~~~~-~i~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 314 (424)
.+.+++.++.+. ++++++++||.+-++.... ......+........+ . ..+...+|+|++++.++
T Consensus 144 ~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~dva~~~~~l~ 211 (230)
T PRK07041 144 LEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLP--A----------RRVGQPEDVANAILFLA 211 (230)
T ss_pred HHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCC--C----------CCCcCHHHHHHHHHHHh
Confidence 999999998765 7899999999987653210 0000112222222111 1 11456799999999988
Q ss_pred hhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 315 DTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
.... ..|++|++.+|.++
T Consensus 212 ~~~~------------~~G~~~~v~gg~~~ 229 (230)
T PRK07041 212 ANGF------------TTGSTVLVDGGHAI 229 (230)
T ss_pred cCCC------------cCCcEEEeCCCeec
Confidence 7432 23489999887643
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-21 Score=178.43 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=145.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+|+||||+|+||+++++.|+++|++|++++|+.+....... ......++.++.+|++|.+++.+++++.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~----~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAA----RLPKAARVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4789999999999999999999999999999997543222111 1111127899999999999998887764
Q ss_pred CccEEEEcccccCchh-----hccChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRY-----AMQNPNSYVESNIAGFVNLLE----TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~-----~~~~~~~~~~~N~~g~~~ll~----a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
.+|+||||||...... ..++.+..+++|+.|+.++++ ++++.+.+ +||++||...+...
T Consensus 78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~-~iv~isS~~~~~~~----------- 145 (257)
T PRK07024 78 LPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRG-TLVGIASVAGVRGL----------- 145 (257)
T ss_pred CCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCC-EEEEEechhhcCCC-----------
Confidence 4799999999754321 123346789999999888766 55555544 89999986554211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
.....|++||++.+.+++.++.+ .|++++++|||.+.++..... . +. .+ .++
T Consensus 146 -~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~--------------~---~~---~~----~~~ 200 (257)
T PRK07024 146 -PGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAHN--------------P---YP---MP----FLM 200 (257)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhcC--------------C---CC---CC----Ccc
Confidence 23467999999999999998754 489999999999988732110 0 00 00 135
Q ss_pred cHHHHHHHHHHHhhhcc
Q 042406 302 YIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~ 318 (424)
..+|+++.++.++.+..
T Consensus 201 ~~~~~a~~~~~~l~~~~ 217 (257)
T PRK07024 201 DADRFAARAARAIARGR 217 (257)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 78999999999987643
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-21 Score=183.37 Aligned_cols=189 Identities=13% Similarity=0.041 Sum_probs=141.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
..++++|+++||||+++||.+++++|+++|++|++++|+.++.+........ .....++.++.+|++|.++++++++.+
T Consensus 9 ~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~-~~~~~~v~~~~~Dl~d~~sv~~~~~~~ 87 (313)
T PRK05854 9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRT-AVPDAKLSLRALDLSSLASVAALGEQL 87 (313)
T ss_pred CcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 4457899999999999999999999999999999999987655444333322 122346889999999999999888764
Q ss_pred -----CccEEEEcccccCch---hhccChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEecCCccc-CCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVR---YAMQNPNSYVESNIAGFVNLLETCKS---SDPQPAIVWASSSSVY-GVNKKVPFSEK 221 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~---~~~~~~~~~~~~N~~g~~~ll~a~~~---~~~~~~~v~~SS~~vy-g~~~~~~~~e~ 221 (424)
++|+||||||..... ...+..+..+++|+.|+..+.+.+.. .+. .+||++||...+ +.....++.++
T Consensus 88 ~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~-~riv~vsS~~~~~~~~~~~~~~~~ 166 (313)
T PRK05854 88 RAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGR-ARVTSQSSIAARRGAINWDDLNWE 166 (313)
T ss_pred HHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCC-CCeEEEechhhcCCCcCccccccc
Confidence 579999999986532 23355678999999998777665542 222 389999987554 32222233333
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHI-----YGLSITGLRFFTVYGPW 265 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~i~~~~vrp~~v~G~~ 265 (424)
.. ..+...|+.||++.+.++++++++ .|+++++++||.|..+-
T Consensus 167 ~~-~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~ 214 (313)
T PRK05854 167 RS-YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNL 214 (313)
T ss_pred cc-CcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCc
Confidence 32 255678999999999999999864 37999999999997653
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=175.85 Aligned_cols=228 Identities=15% Similarity=0.110 Sum_probs=154.6
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 77 TRGLTVLVTGAAG--FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+++|++|||||++ +||++++++|+++|++|++.+|+.... ....+.... . ....++++|++|.++++++++.+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~-~~~~~~~~~-~--g~~~~~~~Dv~d~~~v~~~~~~~~ 80 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALG-KRVKPLAES-L--GSDFVLPCDVEDIASVDAVFEALE 80 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHH-HHHHHHHHh-c--CCceEEeCCCCCHHHHHHHHHHHH
Confidence 5789999999997 999999999999999999999864211 111111111 1 12357899999999999888765
Q ss_pred ----CccEEEEcccccCc--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGV--------RYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||.... ....++.+..+++|+.++.++++++..... ..+||++||.+....
T Consensus 81 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~-------- 152 (271)
T PRK06505 81 KKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRV-------- 152 (271)
T ss_pred HHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCcccc--------
Confidence 68999999997532 112233467899999998888776654321 238999998654321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
......|++||++.+.+++.++.++ |+++++|.||.|..+....-.............. ++
T Consensus 153 ----~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~--p~---------- 216 (271)
T PRK06505 153 ----MPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNS--PL---------- 216 (271)
T ss_pred ----CCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcchHHHHHHHhhcC--Cc----------
Confidence 1234679999999999999998875 8999999999998763211000001111111111 11
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.-+...+|+|.+++.++...... ..|+++.+.+|.
T Consensus 217 ~r~~~peeva~~~~fL~s~~~~~----------itG~~i~vdgG~ 251 (271)
T PRK06505 217 RRTVTIDEVGGSALYLLSDLSSG----------VTGEIHFVDSGY 251 (271)
T ss_pred cccCCHHHHHHHHHHHhCccccc----------cCceEEeecCCc
Confidence 11556899999999988754322 334778777664
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=174.35 Aligned_cols=227 Identities=11% Similarity=0.099 Sum_probs=158.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+.+|+++||||+|+||++++++|+++|++|+++++... ........ . ....+.++++|++|.+++.++++++
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~--~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVT--A-LGRRFLSLTADLRKIDGIPALLERAVA 81 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHH--h-cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999887432 11111111 1 1346789999999999999988764
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.++.++++++.. .+...++|++||...+...
T Consensus 82 ~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 152 (253)
T PRK08993 82 EFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG--------- 152 (253)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC---------
Confidence 6899999999754321 2234567999999999888877643 2222489999998776531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.....|+.+|++.+.+++.++.++ |++++.|+||.+-.+....-.........+... ++. .-
T Consensus 153 ---~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~--~p~----------~r 217 (253)
T PRK08993 153 ---IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDR--IPA----------GR 217 (253)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhc--CCC----------CC
Confidence 234689999999999999998764 899999999999876322100000111112111 111 12
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
+...+|+|.+++.++...... ..|+.+.+.+|
T Consensus 218 ~~~p~eva~~~~~l~s~~~~~----------~~G~~~~~dgg 249 (253)
T PRK08993 218 WGLPSDLMGPVVFLASSASDY----------INGYTIAVDGG 249 (253)
T ss_pred CcCHHHHHHHHHHHhCccccC----------ccCcEEEECCC
Confidence 667899999999988765432 33467776654
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=181.10 Aligned_cols=211 Identities=15% Similarity=0.174 Sum_probs=153.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+.+.+|+|+||||+|+||++++++|+++|++|++++|+.+..+........ ....+.++.+|++|.++++++++.+
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~---~g~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA---LGAEVLVVPTDVTDADQVKALATQAA 79 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999976544333222221 2346788999999999999888653
Q ss_pred ----CccEEEEcccccCchhhc----cChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRYAM----QNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~~~----~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|++|||||........ ++.+..+++|+.|+.++.+++ ++.+.+ +||++||...+...
T Consensus 80 ~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g-~iV~isS~~~~~~~-------- 150 (330)
T PRK06139 80 SFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHG-IFINMISLGGFAAQ-------- 150 (330)
T ss_pred HhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC-EEEEEcChhhcCCC--------
Confidence 679999999975432222 223568999999988876665 444433 89999997765421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.....|+.||++.+.+++.++.+. ++++++|+||.+.+|...... .. .+... ...
T Consensus 151 ----p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~-------~~-~~~~~---------~~~ 209 (330)
T PRK06139 151 ----PYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGA-------NY-TGRRL---------TPP 209 (330)
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccccc-------cc-ccccc---------cCC
Confidence 234789999999999988887663 799999999999988432110 00 01000 111
Q ss_pred cccccHHHHHHHHHHHhhhcc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~ 318 (424)
...++.+|+|++++.+++++.
T Consensus 210 ~~~~~pe~vA~~il~~~~~~~ 230 (330)
T PRK06139 210 PPVYDPRRVAKAVVRLADRPR 230 (330)
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 236789999999999998765
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=181.02 Aligned_cols=165 Identities=18% Similarity=0.247 Sum_probs=131.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
++++|+||||+|+||++++++|+++|++|++++|+.+... ...+++++++|++|.++++++++.+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAA-----------PIPGVELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-----------ccCCCeeEEeecCCHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999999643211 1246889999999999999988865
Q ss_pred -CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+...
T Consensus 72 g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~~----------- 139 (270)
T PRK06179 72 GRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSG-RIINISSVLGFLPA----------- 139 (270)
T ss_pred CCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEECCccccCCC-----------
Confidence 5799999999854322 22334678999999988887774 555654 89999997665421
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCC
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWG 266 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~ 266 (424)
.....|+.+|.+.+.+++.++.+ .|+++++++||.+.++..
T Consensus 140 -~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~ 183 (270)
T PRK06179 140 -PYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFD 183 (270)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccc
Confidence 23478999999999999998765 499999999999988743
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-20 Score=170.59 Aligned_cols=223 Identities=12% Similarity=0.042 Sum_probs=154.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-C
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-A 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~ 154 (424)
.+++|+|+||||+|+||++++++|+++|++|+++.+..... ...... ..++.++.+|++|.+++.++++.. +
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~---~~~l~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDA---AERLAQ----ETGATAVQTDSADRDAVIDVVRKSGA 75 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHH---HHHHHH----HhCCeEEecCCCCHHHHHHHHHHhCC
Confidence 35789999999999999999999999999999887643211 111111 124678899999999998888764 4
Q ss_pred ccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKSS-DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPAS 229 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~ 229 (424)
+|+||||||..... ...++.+..+++|+.++.+++..+... ....++|++||...... +..+..
T Consensus 76 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~-----------~~~~~~ 144 (237)
T PRK12742 76 LDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRM-----------PVAGMA 144 (237)
T ss_pred CcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccC-----------CCCCCc
Confidence 79999999975321 122345679999999998887665543 12248999999654210 113467
Q ss_pred hHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHH
Q 042406 230 LYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDI 306 (424)
Q Consensus 230 ~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 306 (424)
.|+.+|++.+.+++.++.++ |+++++|+||.+..+...... .....+....+ ...+...+|+
T Consensus 145 ~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~---~~~~~~~~~~~------------~~~~~~p~~~ 209 (237)
T PRK12742 145 AYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANG---PMKDMMHSFMA------------IKRHGRPEEV 209 (237)
T ss_pred chHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCcccccc---HHHHHHHhcCC------------CCCCCCHHHH
Confidence 89999999999999988764 799999999999877432211 11111111111 1125678999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 307 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
++++..++...... ..|..+.+.+|
T Consensus 210 a~~~~~l~s~~~~~----------~~G~~~~~dgg 234 (237)
T PRK12742 210 AGMVAWLAGPEASF----------VTGAMHTIDGA 234 (237)
T ss_pred HHHHHHHcCcccCc----------ccCCEEEeCCC
Confidence 99999888654421 33477777655
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=173.82 Aligned_cols=232 Identities=13% Similarity=0.091 Sum_probs=158.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+........... .....++.++.+|++|.+++.++++.+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLRE-KFPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-hCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999976554433322221 112246889999999999998887754
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++....+++|+.+...+++++ ++.+.+ +||++||...+...
T Consensus 84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 153 (265)
T PRK07062 84 RFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAA-SIVCVNSLLALQPE--------- 153 (265)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCc-EEEEeccccccCCC---------
Confidence 5799999999754221 12234568889988876665544 444433 89999997665321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC--------CcHHHHHHHHHcCCceeEEecC
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD--------MAYFFFTRDIIRGKRITVYEAP 291 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
.....|+.+|++.+.+++.++.++ |+++++|+||.|..+..... ..+..+...+.....+++
T Consensus 154 ---~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---- 226 (265)
T PRK07062 154 ---PHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGIPL---- 226 (265)
T ss_pred ---CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCCCc----
Confidence 234689999999999999888764 89999999999977632110 001111111111111111
Q ss_pred CCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
.-+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 227 ------~r~~~p~~va~~~~~L~s~~~~~----------~tG~~i~vdgg 260 (265)
T PRK07062 227 ------GRLGRPDEAARALFFLASPLSSY----------TTGSHIDVSGG 260 (265)
T ss_pred ------CCCCCHHHHHHHHHHHhCchhcc----------cccceEEEcCc
Confidence 12667899999999887654321 34478888765
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-21 Score=175.75 Aligned_cols=207 Identities=13% Similarity=0.093 Sum_probs=145.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
|+|+||||+|+||.++++.|+++|++|++++|+.+..... ... ...++.++.+|++|.+++.++++.. +
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~----~~~--~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 74 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQEL----KDE--LGDNLYIAQLDVRNRAAIEEMLASLPAEWRN 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHH----HHH--hccceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 6899999999999999999999999999999965432211 111 1246889999999999998887753 5
Q ss_pred ccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 155 ~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
+|+|||+||.... ....++.+..+++|+.|+.++++. +++.+.+ +||++||.+.+.. .
T Consensus 75 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~------------~ 141 (248)
T PRK10538 75 IDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHG-HIINIGSTAGSWP------------Y 141 (248)
T ss_pred CCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEECCcccCCC------------C
Confidence 7999999997421 112334467899999996655554 4455544 8999999765421 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.+...|+.+|.+.+.+++.++.+. ++++++|+||.+.|+......+.... .... ..+ . ...++.
T Consensus 142 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~~-~~~~-----~~~----~---~~~~~~ 208 (248)
T PRK10538 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDD-GKAE-----KTY----Q---NTVALT 208 (248)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCcH-HHHH-----hhc----c---ccCCCC
Confidence 345789999999999999998764 79999999999987632110000000 0000 001 0 113578
Q ss_pred HHHHHHHHHHHhhhcc
Q 042406 303 IDDIVKGCLAGLDTAK 318 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~ 318 (424)
.+|+|++++.++..+.
T Consensus 209 ~~dvA~~~~~l~~~~~ 224 (248)
T PRK10538 209 PEDVSEAVWWVATLPA 224 (248)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999887554
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=174.84 Aligned_cols=209 Identities=16% Similarity=0.075 Sum_probs=149.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
|+|+||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.+++.++++.+ +
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 77 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLRE---AGGDGFYQRCDVRDYSQLTALAQACEEKWGG 77 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5799999999999999999999999999999975443332222211 2346889999999999998888743 5
Q ss_pred ccEEEEcccccCchhhc----cChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRYAM----QNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~----~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|+||||||........ .+.+..+++|+.++.++.++ +++.+.+ +||++||...+... .
T Consensus 78 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~vsS~~~~~~~------------~ 144 (270)
T PRK05650 78 IDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSG-RIVNIASMAGLMQG------------P 144 (270)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC-EEEEECChhhcCCC------------C
Confidence 79999999986532222 22345789999887775554 5555544 89999997665421 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC-cHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM-AYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
....|+.+|++.+.+.+.++.++ |+++++|+||.+.++...... ..+.....+.. .....+++
T Consensus 145 ~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 211 (270)
T PRK05650 145 AMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVGK-------------LLEKSPIT 211 (270)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHHH-------------HhhcCCCC
Confidence 45789999999999999988774 899999999999887432110 00111111100 00123678
Q ss_pred HHHHHHHHHHHhhhc
Q 042406 303 IDDIVKGCLAGLDTA 317 (424)
Q Consensus 303 v~Dva~a~~~~~~~~ 317 (424)
++|+|+.++.++++.
T Consensus 212 ~~~vA~~i~~~l~~~ 226 (270)
T PRK05650 212 AADIADYIYQQVAKG 226 (270)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999999999864
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=172.49 Aligned_cols=223 Identities=13% Similarity=0.048 Sum_probs=155.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++++++||||+|+||+++++.|+++|+.|++.+|+.+...... .. ...++.++.+|++|.+++.+++++.
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~----~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALA----AE--LGERVKIFPANLSDRDEVKALGQKAEA 76 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH----HH--hCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 456889999999999999999999999999988888543322211 11 1246889999999999998887653
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcc-cCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSV-YGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~v-yg~~~~~~~~e~ 221 (424)
++|+||||||..... ....+.+..+++|+.++.++++++.+ .+. ++||++||... ++.
T Consensus 77 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~--------- 146 (245)
T PRK12936 77 DLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRY-GRIINITSVVGVTGN--------- 146 (245)
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC-CEEEEECCHHhCcCC---------
Confidence 579999999975421 12234567899999998888877643 343 38999999644 432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.....|+.+|.+.+.+++.++++. ++++++++||.+.++..... .......+... . ...
T Consensus 147 ----~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~--~~~~~~~~~~~--~----------~~~ 208 (245)
T PRK12936 147 ----PGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKL--NDKQKEAIMGA--I----------PMK 208 (245)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhccc--ChHHHHHHhcC--C----------CCC
Confidence 234679999999999988887653 89999999998876532210 01111111111 1 112
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+...+|++++++.++...... ..|+++++.+|.
T Consensus 209 ~~~~~~~ia~~~~~l~~~~~~~----------~~G~~~~~~~g~ 242 (245)
T PRK12936 209 RMGTGAEVASAVAYLASSEAAY----------VTGQTIHVNGGM 242 (245)
T ss_pred CCcCHHHHHHHHHHHcCccccC----------cCCCEEEECCCc
Confidence 2567899999998887553321 345899988764
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=179.71 Aligned_cols=218 Identities=18% Similarity=0.155 Sum_probs=153.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|+++||||+|+||.++++.|+++|++|++++|+.+..+..... ......+..+.+|++|.+++.++++++
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~----l~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAE----LGGDDRVLTVVADVTDLAAMQAAAEEAV 80 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----hcCCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999965433222111 111345677789999999998887754
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSD--PQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~--~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.... ...+||++||...+...
T Consensus 81 ~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 150 (296)
T PRK05872 81 ERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAA---------- 150 (296)
T ss_pred HHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCC----------
Confidence 6899999999854321 122335789999999999888775421 12389999997766431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.....|+.||.+.+.+++.++.+ .|+++++++||.+.++..............+....+.++ ..+
T Consensus 151 --~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~p~----------~~~ 218 (296)
T PRK05872 151 --PGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLPWPL----------RRT 218 (296)
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCCCcc----------cCC
Confidence 33578999999999999998765 489999999999987643211000011112221111111 136
Q ss_pred ccHHHHHHHHHHHhhhcc
Q 042406 301 TYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~ 318 (424)
+..+|++++++.++....
T Consensus 219 ~~~~~va~~i~~~~~~~~ 236 (296)
T PRK05872 219 TSVEKCAAAFVDGIERRA 236 (296)
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 789999999999987654
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=174.05 Aligned_cols=229 Identities=14% Similarity=0.093 Sum_probs=154.2
Q ss_pred CCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAG--FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+++|+++||||++ +||+++++.|+++|++|++.+|+. ...+.......+ . ....++++|++|+++++++++.+
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~-~--g~~~~~~~Dv~~~~~v~~~~~~~ 80 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEE-I--GCNFVSELDVTNPKSISNLFDDI 80 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHh-c--CCceEEEccCCCHHHHHHHHHHH
Confidence 35789999999997 899999999999999999988853 222222222111 1 12346799999999999888754
Q ss_pred -----CccEEEEcccccCc--------hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGV--------RYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||.... ....++.+..+++|+.+...+++++.... ...+||++||.+....
T Consensus 81 ~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~------- 153 (260)
T PRK06603 81 KEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKV------- 153 (260)
T ss_pred HHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccC-------
Confidence 58999999997431 11122345689999999888887654321 1238999998654321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
......|++||++.+.+++.++.++ |+++++|.||.|-.+..............+....+ +
T Consensus 154 -----~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p--~--------- 217 (260)
T PRK06603 154 -----IPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAP--L--------- 217 (260)
T ss_pred -----CCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcCC--c---------
Confidence 1234679999999999999998764 79999999999976632100000111122221111 1
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.-+...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 218 -~r~~~pedva~~~~~L~s~~~~~----------itG~~i~vdgG~ 252 (260)
T PRK06603 218 -KRNTTQEDVGGAAVYLFSELSKG----------VTGEIHYVDCGY 252 (260)
T ss_pred -CCCCCHHHHHHHHHHHhCccccc----------CcceEEEeCCcc
Confidence 12567899999999998754432 344777777653
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-20 Score=170.96 Aligned_cols=225 Identities=13% Similarity=0.053 Sum_probs=153.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc-hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY-YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++|+++||||+|+||++++++|+++|++|+++.+.... ......... .....+.++.+|++|.+++.++++++
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQK---ALGFDFIASEGNVGDWDSTKAAFDKVKA 77 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999886543221 111111111 11345778899999999998887754
Q ss_pred ---CccEEEEcccccCc----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV----RYAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||.... ....++.+..+++|+.++..+++++ ++.+.+ +||++||......
T Consensus 78 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~---------- 146 (246)
T PRK12938 78 EVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWG-RIINISSVNGQKG---------- 146 (246)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe-EEEEEechhccCC----------
Confidence 57999999997542 1223345678999999977655544 444444 8999998644321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
......|+.+|.+.+.+++.++++ .|+++++|+||.+.+|.... ..+.....+....+ ...
T Consensus 147 --~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~--~~~~~~~~~~~~~~------------~~~ 210 (246)
T PRK12938 147 --QFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA--IRPDVLEKIVATIP------------VRR 210 (246)
T ss_pred --CCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhh--cChHHHHHHHhcCC------------ccC
Confidence 134578999999999999888765 38999999999998874321 11222233322211 112
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
+...+|++.+++.++...... ..++.+.+.++
T Consensus 211 ~~~~~~v~~~~~~l~~~~~~~----------~~g~~~~~~~g 242 (246)
T PRK12938 211 LGSPDEIGSIVAWLASEESGF----------STGADFSLNGG 242 (246)
T ss_pred CcCHHHHHHHHHHHcCcccCC----------ccCcEEEECCc
Confidence 556899999999887654321 34478888765
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=170.76 Aligned_cols=220 Identities=13% Similarity=0.125 Sum_probs=154.8
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----Ccc
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----AFT 156 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~~d 156 (424)
|+|||++|+||.++++.|+++|++|++++|+............ . .....+.++.+|++|.++++++++++ ++|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 78 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEEL-K-AYGVKALGVVCDVSDREDVKAVVEEIEEELGPID 78 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHH-H-hcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999986522111111111 1 11235889999999999999888764 579
Q ss_pred EEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCC-cccCCCCCCCCCCCCCCCCC
Q 042406 157 HVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSS-SVYGVNKKVPFSEKDRTDQP 227 (424)
Q Consensus 157 ~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~-~vyg~~~~~~~~e~~~~~~~ 227 (424)
+|||+||..... ....+.+..+++|+.++.++++++.. .+. ++||++||. +++|. .+
T Consensus 79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~~sS~~~~~g~-------------~~ 144 (239)
T TIGR01830 79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRS-GRIINISSVVGLMGN-------------AG 144 (239)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-eEEEEECCccccCCC-------------CC
Confidence 999999985421 22334567899999999999998865 333 389999995 45542 23
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHH
Q 042406 228 ASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYID 304 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 304 (424)
...|+.+|.+.+.+++.++++ .|+++++++||.+.++.... ....+...+....+. ..+.+++
T Consensus 145 ~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~--~~~~~~~~~~~~~~~------------~~~~~~~ 210 (239)
T TIGR01830 145 QANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDK--LSEKVKKKILSQIPL------------GRFGTPE 210 (239)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhh--cChHHHHHHHhcCCc------------CCCcCHH
Confidence 578999999999999888765 38999999999987753221 111222223222111 1266899
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 305 Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
|++++++.++...... ..+++||+.++
T Consensus 211 ~~a~~~~~~~~~~~~~----------~~g~~~~~~~g 237 (239)
T TIGR01830 211 EVANAVAFLASDEASY----------ITGQVIHVDGG 237 (239)
T ss_pred HHHHHHHHHhCcccCC----------cCCCEEEeCCC
Confidence 9999999888543221 33489999764
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-20 Score=173.03 Aligned_cols=228 Identities=13% Similarity=0.099 Sum_probs=153.7
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 77 TRGLTVLVTGAAG--FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+++|+++||||++ +||+++++.|+++|++|++.+|+. ...+........ ...+.++.+|++|.++++++++.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~ 79 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQ---LGSDIVLPCDVAEDASIDAMFAELG 79 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhc---cCCceEeecCCCCHHHHHHHHHHHH
Confidence 5789999999985 999999999999999999998862 222222222211 234678999999999999888764
Q ss_pred ----CccEEEEcccccCch---------hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR---------YAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~---------~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|++|||||..... ...++.+..+++|+.+...+.+++.... ...+||++||.+....
T Consensus 80 ~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~~------- 152 (262)
T PRK07984 80 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA------- 152 (262)
T ss_pred hhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCCC-------
Confidence 589999999975321 1122334678999999877777654321 1238999998654321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
......|++||.+.+.+++.++.++ |+++++|.||.|..+-...-.........+....+ +
T Consensus 153 -----~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p--~--------- 216 (262)
T PRK07984 153 -----IPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTP--I--------- 216 (262)
T ss_pred -----CCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcCC--C---------
Confidence 1234679999999999999998764 89999999999976521100001111111111111 1
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.-+...+|++.+++.++...... ..|+++.+.++.
T Consensus 217 -~r~~~pedva~~~~~L~s~~~~~----------itG~~i~vdgg~ 251 (262)
T PRK07984 217 -RRTVTIEDVGNSAAFLCSDLSAG----------ISGEVVHVDGGF 251 (262)
T ss_pred -cCCCCHHHHHHHHHHHcCccccc----------ccCcEEEECCCc
Confidence 12677899999999988764432 334777777653
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=175.71 Aligned_cols=228 Identities=10% Similarity=0.043 Sum_probs=153.4
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 77 TRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 77 ~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+++|+++||||+ ++||+++++.|+++|++|++.+|+.. ..+.......+ .. .. .++++|++|.++++++++.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~-~~-~~-~~~~~Dv~d~~~v~~~~~~i~ 78 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQE-LG-SD-YVYELDVSKPEHFKSLAESLK 78 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHh-cC-Cc-eEEEecCCCHHHHHHHHHHHH
Confidence 468999999997 79999999999999999999998642 11122222111 11 22 67899999999998888765
Q ss_pred ----CccEEEEcccccCc--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGV--------RYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||.... ....++.+..+++|+.|+..+.+++..... ..+||++||.+....
T Consensus 79 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~-------- 150 (274)
T PRK08415 79 KDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVKY-------- 150 (274)
T ss_pred HHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCccC--------
Confidence 68999999997431 111233467899999998888776654321 238999998654321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
......|++||++.+.+++.++.++ |+++++|.||.|..+............ .... ...++
T Consensus 151 ----~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~-~~~~-~~~pl---------- 214 (274)
T PRK08415 151 ----VPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDFRMIL-KWNE-INAPL---------- 214 (274)
T ss_pred ----CCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchhhHHh-hhhh-hhCch----------
Confidence 1234679999999999999998764 899999999999875321000000000 0000 01111
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.-+...+|+|.+++.++...... ..|+++.+.+|.
T Consensus 215 ~r~~~pedva~~v~fL~s~~~~~----------itG~~i~vdGG~ 249 (274)
T PRK08415 215 KKNVSIEEVGNSGMYLLSDLSSG----------VTGEIHYVDAGY 249 (274)
T ss_pred hccCCHHHHHHHHHHHhhhhhhc----------ccccEEEEcCcc
Confidence 12567899999999888754322 334778777764
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=172.82 Aligned_cols=229 Identities=12% Similarity=0.057 Sum_probs=155.7
Q ss_pred CCCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 75 RSTRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 75 ~~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
.++++|+++||||+ ++||++++++|+++|++|++.+|+.+.. +...+...+ . ..+.++++|++|.++++++++.
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~-~~~~~~~~~-~--~~~~~~~~D~~~~~~v~~~~~~ 81 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKAR-PYVEPLAEE-L--DAPIFLPLDVREPGQLEAVFAR 81 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhH-HHHHHHHHh-h--ccceEEecCcCCHHHHHHHHHH
Confidence 34688999999998 5999999999999999999999965321 111222111 1 2356899999999999888776
Q ss_pred c-----CccEEEEcccccCc--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCC
Q 042406 153 V-----AFTHVMHLAAQAGV--------RYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~ 218 (424)
+ ++|++|||||.... ....++.+..+++|+.++.++++++..... ..++|++||.+...
T Consensus 82 ~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~------- 154 (258)
T PRK07533 82 IAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK------- 154 (258)
T ss_pred HHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc-------
Confidence 5 58999999997532 112234467999999998888877654321 23799999864421
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
+......|++||++.+.+++.++.++ |+++++|+||.|-.+-...-.........+....+ +
T Consensus 155 -----~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p--~-------- 219 (258)
T PRK07533 155 -----VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERAP--L-------- 219 (258)
T ss_pred -----CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcCC--c--------
Confidence 11234679999999999999998764 89999999999977532110001112222222111 1
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
..+...+|+|.+++.++...... ..|+.+.+.++
T Consensus 220 --~r~~~p~dva~~~~~L~s~~~~~----------itG~~i~vdgg 253 (258)
T PRK07533 220 --RRLVDIDDVGAVAAFLASDAARR----------LTGNTLYIDGG 253 (258)
T ss_pred --CCCCCHHHHHHHHHHHhChhhcc----------ccCcEEeeCCc
Confidence 12567899999999988654321 33477777655
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=176.45 Aligned_cols=226 Identities=12% Similarity=0.072 Sum_probs=156.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||++++++|+++|++|++++|+.+..+.. ... ...++.++++|++|.+++.++++++
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~----~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASL----RQR--FGDHVLVVEGDVTSYADNQRAVDQTVD 76 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHH--hCCcceEEEccCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999965433221 111 1246789999999999998888764
Q ss_pred ---CccEEEEcccccCch-----hhccC----hHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR-----YAMQN----PNSYVESNIAGFVNLLETCKSSD--PQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~-----~~~~~----~~~~~~~N~~g~~~ll~a~~~~~--~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||+.... ...++ .+..+++|+.++..+++++.... ...++|++||...+...
T Consensus 77 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------ 150 (263)
T PRK06200 77 AFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPG------ 150 (263)
T ss_pred hcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCC------
Confidence 689999999974321 11111 34578899999888887765421 12379999997765421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCC---------cHHHHHHHHHcCCceeEE
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDM---------AYFFFTRDIIRGKRITVY 288 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~ 288 (424)
.+...|+.||.+.+.+++.++.++ ++++++|.||.|..+-..... ..+.....+... .+
T Consensus 151 ------~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p-- 220 (263)
T PRK06200 151 ------GGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAI--TP-- 220 (263)
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcC--CC--
Confidence 334679999999999999998875 599999999999776321100 000011111111 11
Q ss_pred ecCCCCccccccccHHHHHHHHHHHhhhc-cccCCCCCCCCCCCCcceEEcCCC
Q 042406 289 EAPDGASVARDFTYIDDIVKGCLAGLDTA-KKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 289 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
..-+...+|++.+++.++... ... ..|+++.+.+|
T Consensus 221 --------~~r~~~~~eva~~~~fl~s~~~~~~----------itG~~i~vdgG 256 (263)
T PRK06200 221 --------LQFAPQPEDHTGPYVLLASRRNSRA----------LTGVVINADGG 256 (263)
T ss_pred --------CCCCCCHHHHhhhhhheecccccCc----------ccceEEEEcCc
Confidence 123677899999999888654 321 34478888765
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=172.97 Aligned_cols=230 Identities=13% Similarity=0.066 Sum_probs=154.8
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
++++|+++||||+ ++||++++++|+++|++|++.+|+... .+...+...+ ....++.++++|++|.++++++++.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~-~~~~~~~~~~-~~~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERL-EKEVRELADT-LEGQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccc-hHHHHHHHHH-cCCCceEEEecCCCCHHHHHHHHHHH
Confidence 4678999999997 899999999999999999999885322 1222222221 12356889999999999998888754
Q ss_pred -----CccEEEEcccccCc-----h---hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGV-----R---YAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~-----~---~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|++|||||.... . ...++....+++|+.+...+++++..... ..+||++||....-.
T Consensus 82 ~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~------- 154 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERV------- 154 (257)
T ss_pred HHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccC-------
Confidence 58999999997531 1 11122346789999998877776654321 238999999654311
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
......|++||++.+.+++.++.++ |+++++|+||.|..+......-.......+....+
T Consensus 155 -----~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------ 217 (257)
T PRK08594 155 -----VQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEERAP------------ 217 (257)
T ss_pred -----CCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhcCC------------
Confidence 1234679999999999999998764 79999999999987621100000011111111111
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
...+...+|++.+++.++...... ..|+++.+.+|
T Consensus 218 ~~r~~~p~~va~~~~~l~s~~~~~----------~tG~~~~~dgg 252 (257)
T PRK08594 218 LRRTTTQEEVGDTAAFLFSDLSRG----------VTGENIHVDSG 252 (257)
T ss_pred ccccCCHHHHHHHHHHHcCccccc----------ccceEEEECCc
Confidence 112567899999999988764432 33477777655
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.4e-21 Score=181.35 Aligned_cols=188 Identities=13% Similarity=0.024 Sum_probs=135.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+|+||||+|+||++++++|+++|++|++++|+.+........... ......+.++.+|++|.+++++++++.
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 91 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITA-ATPGADVTLQELDLTSLASVRAAADALRA 91 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-hCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999976543332222221 112346889999999999999888754
Q ss_pred ---CccEEEEcccccCchh--hccChHHHHHHHHHH----HHHHHHHHHhcCCCCeEEEecCCcccC--CCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY--AMQNPNSYVESNIAG----FVNLLETCKSSDPQPAIVWASSSSVYG--VNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~--~~~~~~~~~~~N~~g----~~~ll~a~~~~~~~~~~v~~SS~~vyg--~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.| +..+++.+++.+.+ +||++||.+.+. .........+.
T Consensus 92 ~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~-~iV~vSS~~~~~~~~~~~~~~~~~~ 170 (306)
T PRK06197 92 AYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGS-RVVTVSSGGHRIRAAIHFDDLQWER 170 (306)
T ss_pred hCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCC-EEEEECCHHHhccCCCCccccCccc
Confidence 5899999999754321 234457789999999 55566666665543 999999976543 21111121111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEE--EEeccccCCCC
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITG--LRFFTVYGPWG 266 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~--vrp~~v~G~~~ 266 (424)
...+...|+.||++.+.+++.+++++ ++++++ ++||.|..+..
T Consensus 171 -~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~ 218 (306)
T PRK06197 171 -RYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELA 218 (306)
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCccc
Confidence 12456789999999999999998765 666655 47999987643
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-20 Score=171.29 Aligned_cols=206 Identities=18% Similarity=0.154 Sum_probs=151.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++++++||||+|+||.+++++|+++|++|++++|+............ ....++.++.+|++|.+++.++++..
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVE---AYGVKVVIATADVSDYEEVTAAIEQLKN 80 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---HhCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999997654332222221 12346889999999999999888754
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+|||+||...... ..++.+..+++|+.++.++++++.. .+. +++|++||...+...
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~ss~~~~~~~--------- 150 (239)
T PRK07666 81 ELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQS-GDIINISSTAGQKGA--------- 150 (239)
T ss_pred HcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-cEEEEEcchhhccCC---------
Confidence 5799999999754321 1223457899999999888887753 333 389999997654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.+.++..... . ... +.. ..
T Consensus 151 ---~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~------------~--~~~----~~~---~~ 206 (239)
T PRK07666 151 ---AVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL------------G--LTD----GNP---DK 206 (239)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc------------c--ccc----cCC---CC
Confidence 34567999999999999888765 489999999999988733210 0 000 011 23
Q ss_pred cccHHHHHHHHHHHhhhcc
Q 042406 300 FTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~ 318 (424)
++..+|+|++++.++....
T Consensus 207 ~~~~~~~a~~~~~~l~~~~ 225 (239)
T PRK07666 207 VMQPEDLAEFIVAQLKLNK 225 (239)
T ss_pred CCCHHHHHHHHHHHHhCCC
Confidence 6788999999999998753
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-20 Score=176.24 Aligned_cols=206 Identities=17% Similarity=0.215 Sum_probs=150.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
...+++|+++||||+|+||++++++|+++|++|++++|+.+..+........ ....+.++.+|++|.+++.++++.+
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~---~~~~~~~~~~Dl~d~~~v~~~~~~~ 111 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITR---AGGDAMAVPCDLSDLDAVDALVADV 111 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999975443332222111 1245789999999999999888843
Q ss_pred -----CccEEEEcccccCchhhc------cChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRYAM------QNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~~~------~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~ 218 (424)
++|+||||||........ .+.+..+.+|+.|+.++++++ ++.+.+ ++|++||.+++...
T Consensus 112 ~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~----- 185 (293)
T PRK05866 112 EKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDG-HIINVATWGVLSEA----- 185 (293)
T ss_pred HHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-EEEEECChhhcCCC-----
Confidence 679999999975432211 223568999999987777654 355544 89999997665421
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
......|++||++.+.+++.++.++ |+++++++||.|-++.... ...+ .+
T Consensus 186 ------~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~----------------~~~~----~~- 238 (293)
T PRK05866 186 ------SPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAP----------------TKAY----DG- 238 (293)
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccc----------------cccc----cC-
Confidence 1234789999999999999987764 8999999999887662210 0000 00
Q ss_pred cccccccHHHHHHHHHHHhhhc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
...+..+++|+.++.++++.
T Consensus 239 --~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 239 --LPALTADEAAEWMVTAARTR 258 (293)
T ss_pred --CCCCCHHHHHHHHHHHHhcC
Confidence 12467899999999998864
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=170.69 Aligned_cols=217 Identities=17% Similarity=0.163 Sum_probs=154.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-Cc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-AF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~~ 155 (424)
+.+|+++||||+|+||+++++.|+++|++|++++|+.... ...++.++.+|+++. ++++++.. ++
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~------------~~~~~~~~~~D~~~~--~~~~~~~~~~i 68 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD------------LSGNFHFLQLDLSDD--LEPLFDWVPSV 68 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc------------cCCcEEEEECChHHH--HHHHHHhhCCC
Confidence 5678999999999999999999999999999999864311 124688999999997 45554443 56
Q ss_pred cEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 156 THVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 156 d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
|+||||||.... ....++.+..+++|+.++.++++++.. .+. ++||++||...+... .
T Consensus 69 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~------------~ 135 (235)
T PRK06550 69 DILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKS-GIIINMCSIASFVAG------------G 135 (235)
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcChhhccCC------------C
Confidence 999999996421 112334467899999999999887753 333 389999997654321 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
....|+.+|.+.+.+++.++.++ |+++++|+||.+.++..........+...+....+ ...+...
T Consensus 136 ~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 203 (235)
T PRK06550 136 GGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARETP------------IKRWAEP 203 (235)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHhccCC------------cCCCCCH
Confidence 34679999999999999988765 89999999999988854322111122222222211 1226778
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+|+|++++.++...... ..|.++.+.+|.
T Consensus 204 ~~~a~~~~~l~s~~~~~----------~~g~~~~~~gg~ 232 (235)
T PRK06550 204 EEVAELTLFLASGKADY----------MQGTIVPIDGGW 232 (235)
T ss_pred HHHHHHHHHHcChhhcc----------CCCcEEEECCce
Confidence 99999999988654321 334777777653
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-20 Score=171.42 Aligned_cols=229 Identities=15% Similarity=0.098 Sum_probs=158.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+.+|+++||||+|+||+++++.|+++|++|++++|+.. ......... ....++.++.+|++|.+++.++++..
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 78 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELC---GRGHRCTAVVADVRDPASVAAAIKRAKE 78 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHH---HhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999643 111111111 12346789999999999999888764
Q ss_pred ---CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||....... ..+.+..+++|+.++.++++++.. .+. .+||++||......
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~~---------- 147 (263)
T PRK08226 79 KEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKD-GRIVMMSSVTGDMV---------- 147 (263)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEECcHHhccc----------
Confidence 68999999997543221 222345799999999988887653 333 38999998644210
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC------CCcHHHHHHHHHcCCceeEEecCCC
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP------DMAYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
.......|+.+|.+.+.+++.++.++ +++++.|+||.+.++-... ......+...+..+.+.
T Consensus 148 -~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------- 218 (263)
T PRK08226 148 -ADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPL-------- 218 (263)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCCC--------
Confidence 11335689999999999999998765 7999999999998873210 00011223333332221
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 219 ----~~~~~~~~va~~~~~l~~~~~~~----------~~g~~i~~dgg~ 253 (263)
T PRK08226 219 ----RRLADPLEVGELAAFLASDESSY----------LTGTQNVIDGGS 253 (263)
T ss_pred ----CCCCCHHHHHHHHHHHcCchhcC----------CcCceEeECCCc
Confidence 12567899999998887543321 344777777653
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-20 Score=173.51 Aligned_cols=231 Identities=13% Similarity=0.127 Sum_probs=158.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+++++|+++||||+|+||.+++++|+++|++|++++|+.+........... ...++.++.+|++|.+++.++++++
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~i~~~~~~~~ 81 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQ---AGPEGLGVSADVRDYAAVEAAFAQIA 81 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH---hCCceEEEECCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999975433222111111 1235788999999999999888765
Q ss_pred ----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKSSD--PQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~~--~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++...- .+.+||++||...+..
T Consensus 82 ~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~----------- 150 (264)
T PRK07576 82 DEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVP----------- 150 (264)
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccC-----------
Confidence 579999999864321 1223345688999999999988775421 1238999999765421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcH-HHHHHHHHcCCceeEEecCCCCccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAY-FFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
......|+.+|.+.+.+++.++.++ |+++++|+||.+.+......... ......+... .+ ...
T Consensus 151 -~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~--~~----------~~~ 217 (264)
T PRK07576 151 -MPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQS--VP----------LKR 217 (264)
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHhc--CC----------CCC
Confidence 1345789999999999999988664 79999999999875321110000 0011111111 11 123
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+...+|+|++++.++...... ..|..+.+.++.
T Consensus 218 ~~~~~dva~~~~~l~~~~~~~----------~~G~~~~~~gg~ 250 (264)
T PRK07576 218 NGTKQDIANAALFLASDMASY----------ITGVVLPVDGGW 250 (264)
T ss_pred CCCHHHHHHHHHHHcChhhcC----------ccCCEEEECCCc
Confidence 567899999999998754321 233677777653
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-20 Score=172.93 Aligned_cols=229 Identities=13% Similarity=0.075 Sum_probs=153.1
Q ss_pred CCCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGA--AGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg--~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+++|+++|||| +++||+++++.|+++|++|++.+|.. +..+...+.... ......+++|++|.++++++++.+
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAE---LDSELVFRCDVASDDEINQVFADL 78 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhc---cCCceEEECCCCCHHHHHHHHHHH
Confidence 467899999997 67999999999999999999987742 211222222111 123467899999999999888765
Q ss_pred -----CccEEEEcccccCch-----h----hccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVR-----Y----AMQNPNSYVESNIAGFVNLLETCKSSD--PQPAIVWASSSSVYGVNKKVP 217 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~-----~----~~~~~~~~~~~N~~g~~~ll~a~~~~~--~~~~~v~~SS~~vyg~~~~~~ 217 (424)
++|++|||||+.... . ..++.+..+++|+.++..+.+++.... .+.+||++||.+.+..
T Consensus 79 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~----- 153 (261)
T PRK08690 79 GKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRA----- 153 (261)
T ss_pred HHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccC-----
Confidence 689999999986421 0 111234567899998877766543321 1238999998765421
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
......|+++|.+.+.+++.++.+ +|+++++|.||.|-.+....-.........+....+ +
T Consensus 154 -------~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p--~------- 217 (261)
T PRK08690 154 -------IPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNP--L------- 217 (261)
T ss_pred -------CCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcCC--C-------
Confidence 133477999999999999998765 389999999999977632110000111122221111 1
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.-+...+|+|++++.++...... ..|+++.+.+|.
T Consensus 218 ---~r~~~peevA~~v~~l~s~~~~~----------~tG~~i~vdgG~ 252 (261)
T PRK08690 218 ---RRNVTIEEVGNTAAFLLSDLSSG----------ITGEITYVDGGY 252 (261)
T ss_pred ---CCCCCHHHHHHHHHHHhCcccCC----------cceeEEEEcCCc
Confidence 12667899999999998765432 344778777654
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-20 Score=171.13 Aligned_cols=226 Identities=14% Similarity=0.052 Sum_probs=155.9
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEeCCCCch-------hhhHHHHHhhh-hccCCeEEEEccCCCHHHH
Q 042406 77 TRGLTVLVTGAAG--FVGSHVSLALKKRGDGVLGLDNFNNYY-------ETSLKKARKGL-LERAGVFVIDADINDKSLL 146 (424)
Q Consensus 77 ~~~~~vlItGg~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~-------~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v 146 (424)
+++|+|+||||+| +||.+++++|+++|++|++++|+.... ........... ....+++++.+|++|.+++
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 5678999999995 799999999999999999999872211 00000011111 1134689999999999998
Q ss_pred HHHhhcc-----CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCC
Q 042406 147 DKIFNVV-----AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKSS---DPQPAIVWASSSSVYGVNK 214 (424)
Q Consensus 147 ~~~~~~~-----~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~~---~~~~~~v~~SS~~vyg~~~ 214 (424)
.++++.. ++|+||||||....... .++.+..+++|+.++.++++++... ...++||++||...++..
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~- 161 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPM- 161 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCCC-
Confidence 8887764 58999999997543221 2234568999999999999887543 122389999998776521
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecC
Q 042406 215 KVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAP 291 (424)
Q Consensus 215 ~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
.....|+.+|++.+.+++.++.++ +++++.++||.+..+.... .....+....+
T Consensus 162 -----------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~-----~~~~~~~~~~~------- 218 (256)
T PRK12748 162 -----------PDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITE-----ELKHHLVPKFP------- 218 (256)
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCCh-----hHHHhhhccCC-------
Confidence 235789999999999999987664 8999999999987764321 11111111100
Q ss_pred CCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
. ..+...+|+++++..++...... ..++++++.++
T Consensus 219 -~----~~~~~~~~~a~~~~~l~~~~~~~----------~~g~~~~~d~g 253 (256)
T PRK12748 219 -Q----GRVGEPVDAARLIAFLVSEEAKW----------ITGQVIHSEGG 253 (256)
T ss_pred -C----CCCcCHHHHHHHHHHHhCccccc----------ccCCEEEecCC
Confidence 0 11445799999998877654321 23478888765
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-20 Score=176.47 Aligned_cols=211 Identities=18% Similarity=0.140 Sum_probs=146.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc-hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY-YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
..++++|+++||||+|+||++++++|+++|++|++.++.... ........+. ...++.++.+|++|.+++.++++.
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~---~g~~~~~~~~Dv~d~~~~~~~~~~ 83 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRA---AGAKAVAVAGDISQRATADELVAT 83 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHh---cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 446789999999999999999999999999999999885432 1121111111 234688999999999999888775
Q ss_pred c----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHhcC----------CCCeEEEecCCcccCCCC
Q 042406 153 V----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKSSD----------PQPAIVWASSSSVYGVNK 214 (424)
Q Consensus 153 ~----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~~----------~~~~~v~~SS~~vyg~~~ 214 (424)
+ ++|+||||||..... ....+.+..+++|+.|+.++++++.... ...+||++||.+.+...
T Consensus 84 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~- 162 (306)
T PRK07792 84 AVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGP- 162 (306)
T ss_pred HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCC-
Confidence 3 579999999986532 1233446789999999999988764211 11389999997654321
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecC
Q 042406 215 KVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAP 291 (424)
Q Consensus 215 ~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
.....|+++|.+.+.+++.++.+ +|+++++|+|+. -.+ +...+....+ ...
T Consensus 163 -----------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~-~t~----------~~~~~~~~~~-~~~--- 216 (306)
T PRK07792 163 -----------VGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA-RTA----------MTADVFGDAP-DVE--- 216 (306)
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC-CCc----------hhhhhccccc-hhh---
Confidence 23467999999999999998875 489999999973 111 0001100000 000
Q ss_pred CCCccccccccHHHHHHHHHHHhhhc
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
......+..+|++.++..++...
T Consensus 217 ---~~~~~~~~pe~va~~v~~L~s~~ 239 (306)
T PRK07792 217 ---AGGIDPLSPEHVVPLVQFLASPA 239 (306)
T ss_pred ---hhccCCCCHHHHHHHHHHHcCcc
Confidence 01123567999999998877653
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.9e-21 Score=178.23 Aligned_cols=166 Identities=16% Similarity=0.132 Sum_probs=129.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
.+|+|+||||+|+||+++++.|+++|++|++++|+.+.... +...+++++.+|++|.++++++++.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~---------l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 73 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAA---------LEAEGLEAFQLDYAEPESIAALVAQVLELS 73 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH---------HHHCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999996543211 11236889999999999988887754
Q ss_pred --CccEEEEcccccCchhhc----cChHHHHHHHHHH----HHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRYAM----QNPNSYVESNIAG----FVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~~~----~~~~~~~~~N~~g----~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||........ ++.+..+++|+.| +.++++.+++.+.+ +||++||...+..
T Consensus 74 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g-~iv~isS~~~~~~----------- 141 (277)
T PRK05993 74 GGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQG-RIVQCSSILGLVP----------- 141 (277)
T ss_pred CCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCC-EEEEECChhhcCC-----------
Confidence 579999999975432221 2235689999999 56677777777655 8999999655431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPW 265 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~ 265 (424)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|-.+.
T Consensus 142 -~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~ 185 (277)
T PRK05993 142 -MKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRF 185 (277)
T ss_pred -CCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCch
Confidence 134578999999999999998754 48999999999997763
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=172.92 Aligned_cols=224 Identities=15% Similarity=0.144 Sum_probs=152.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+|+||||+|+||.+++++|+++|++|++++|+....+... .. . +..++++|++|.++++++++..
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~----~~-~---~~~~~~~D~~~~~~~~~~~~~~~~ 75 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA----DE-V---GGLFVPTDVTDEDAVNALFDTAAE 75 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----HH-c---CCcEEEeeCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999654322111 11 1 2268899999999999888764
Q ss_pred ---CccEEEEcccccCch------hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCC-cccCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR------YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSS-SVYGVNKKVPFS 219 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~-~vyg~~~~~~~~ 219 (424)
++|+||||||..... ...+..+..+++|+.|+.++++.+. +.+.+ ++|++||. ++++..
T Consensus 76 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g-~iv~~sS~~~~~g~~------ 148 (255)
T PRK06057 76 TYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKG-SIINTASFVAVMGSA------ 148 (255)
T ss_pred HcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCc-EEEEEcchhhccCCC------
Confidence 679999999975321 1122346789999999877766553 34433 88888885 455421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.+...|+.+|++.+.+++.++.++ |+++++|+||.+.+|....... .-...... .+... +
T Consensus 149 ------~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~--~~~~~~~~--~~~~~--~----- 211 (255)
T PRK06057 149 ------TSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFA--KDPERAAR--RLVHV--P----- 211 (255)
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhcc--CCHHHHHH--HHhcC--C-----
Confidence 234679999999988888876543 8999999999999874321100 00000000 00000 0
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
...+..++|+++++..++...... ..+..+.+.++
T Consensus 212 ~~~~~~~~~~a~~~~~l~~~~~~~----------~~g~~~~~~~g 246 (255)
T PRK06057 212 MGRFAEPEEIAAAVAFLASDDASF----------ITASTFLVDGG 246 (255)
T ss_pred CCCCcCHHHHHHHHHHHhCccccC----------ccCcEEEECCC
Confidence 114788999999998877654322 23367777654
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=172.67 Aligned_cols=215 Identities=13% Similarity=0.089 Sum_probs=152.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+.+|+|+||||+|+||++++++|+++|++|++++|+.+..+........ ...++.++.+|+++.+++.+++++.
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEA---EGGAAHVVSLDVTDYQSIKAAVAHAET 82 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999975543322221111 1346889999999999999888754
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCC-------CCeEEEecCCcccCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDP-------QPAIVWASSSSVYGVNKK 215 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~-------~~~~v~~SS~~vyg~~~~ 215 (424)
++|+||||||...... ...+.+..+++|+.++.++++++.. ... ..++|++||...+..
T Consensus 83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~--- 159 (258)
T PRK06949 83 EAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRV--- 159 (258)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCC---
Confidence 5799999999754321 1234567899999999888876642 211 238999999776542
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCC
Q 042406 216 VPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 216 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
..+...|+.+|++.+.+++.++.++ ++++++|+||.|+++...... .......+... ++
T Consensus 160 ---------~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~-~~~~~~~~~~~--~~------ 221 (258)
T PRK06949 160 ---------LPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHW-ETEQGQKLVSM--LP------ 221 (258)
T ss_pred ---------CCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhcc-ChHHHHHHHhc--CC------
Confidence 1345789999999999999988764 899999999999988543110 00111111111 11
Q ss_pred CCccccccccHHHHHHHHHHHhhhcc
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
...+...+|++++++.++....
T Consensus 222 ----~~~~~~p~~~~~~~~~l~~~~~ 243 (258)
T PRK06949 222 ----RKRVGKPEDLDGLLLLLAADES 243 (258)
T ss_pred ----CCCCcCHHHHHHHHHHHhChhh
Confidence 1125557999999999887544
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-20 Score=171.47 Aligned_cols=212 Identities=16% Similarity=0.161 Sum_probs=146.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCC-CCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF-NNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
+++||||+|+||+++++.|+++|++|++++|+ .+.......... .......+.++.+|++|.+++.++++.+ +
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEIN-AAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGG 79 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHH-hcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 38999999999999999999999999999997 332222211111 1111234567899999999998888754 5
Q ss_pred ccEEEEcccccCchhh----ccChHHHHHHHHH----HHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRYA----MQNPNSYVESNIA----GFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~----g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|+||||||....... .++.+..+++|+. ++.++++++++.+.+ +||++||...+... .
T Consensus 80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~ii~~ss~~~~~~~------------~ 146 (251)
T PRK07069 80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPA-SIVNISSVAAFKAE------------P 146 (251)
T ss_pred ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCc-EEEEecChhhccCC------------C
Confidence 7999999997643211 2233567889998 677788888776654 89999998776532 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCC---cHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY-----GLSITGLRFFTVYGPWGRPDM---AYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~-----~i~~~~vrp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
....|+.+|.+.+.+++.++.+. +++++.|+||.+.+|...... ........+..+.+ ..
T Consensus 147 ~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 214 (251)
T PRK07069 147 DYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGVP------------LG 214 (251)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccCC------------CC
Confidence 34679999999999999987663 489999999999987532100 00011111111111 12
Q ss_pred ccccHHHHHHHHHHHhhhcc
Q 042406 299 DFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~ 318 (424)
.+.+++|++.+++.++..+.
T Consensus 215 ~~~~~~~va~~~~~l~~~~~ 234 (251)
T PRK07069 215 RLGEPDDVAHAVLYLASDES 234 (251)
T ss_pred CCcCHHHHHHHHHHHcCccc
Confidence 35678999999998776543
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=193.01 Aligned_cols=242 Identities=17% Similarity=0.139 Sum_probs=160.8
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
...+++|++|||||+|+||++++++|+++|++|++++|+.+........... ......+..+++|++|.+++.++++++
T Consensus 409 ~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~-~~~~~~~~~v~~Dvtd~~~v~~a~~~i 487 (676)
T TIGR02632 409 EKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEING-QFGAGRAVALKMDVTDEQAVKAAFADV 487 (676)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh-hcCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 4557899999999999999999999999999999999975443322221111 112235788999999999999988865
Q ss_pred -----CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLE----TCKSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~----a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||....... ..+.+..+++|+.+...+.+ .+++.+...+||++||...+...
T Consensus 488 ~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~------- 560 (676)
T TIGR02632 488 ALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAG------- 560 (676)
T ss_pred HHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCC-------
Confidence 68999999997543221 12235678899998766654 44444434489999996543211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEecccc-CCCCCCCCcHHHHHHHHHcCCce----eEEecCC
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVY-GPWGRPDMAYFFFTRDIIRGKRI----TVYEAPD 292 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~-G~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 292 (424)
.....|+.||++.+.+++.++.+. |+++++|+|+.|+ |.+......... .....+... ..+ .
T Consensus 561 -----~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~---~ 630 (676)
T TIGR02632 561 -----KNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREE--RAAAYGIPADELEEHY---A 630 (676)
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhh--hhhcccCChHHHHHHH---H
Confidence 345789999999999999998764 7999999999987 322111100000 000000000 000 0
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
.......+++.+|+|++++.++...... ..|+++++.+|..
T Consensus 631 ~r~~l~r~v~peDVA~av~~L~s~~~~~----------~TG~~i~vDGG~~ 671 (676)
T TIGR02632 631 KRTLLKRHIFPADIAEAVFFLASSKSEK----------TTGCIITVDGGVP 671 (676)
T ss_pred hcCCcCCCcCHHHHHHHHHHHhCCcccC----------CcCcEEEECCCch
Confidence 1122234788999999999887643321 3348999988754
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=171.30 Aligned_cols=225 Identities=15% Similarity=0.099 Sum_probs=150.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC-CchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN-NYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
+|+|+||||+|+||..+++.|+++|++|+++.+.. +........... ...++.++.+|++|.+++.++++..
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRA---AGGRACVVAGDVANEADVIAMFDAVQSAF 78 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh---cCCcEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999998776433 222111111111 2346889999999999998887654
Q ss_pred -CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHHHhc----C--CCCeEEEecCCcc-cCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETCKSS----D--PQPAIVWASSSSV-YGVNKKVPFSE 220 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~~~~----~--~~~~~v~~SS~~v-yg~~~~~~~~e 220 (424)
++|+||||||..... ...++.+..+++|+.++.++++++.+. + ...+||++||.+. ++..
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~------- 151 (248)
T PRK06947 79 GRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSP------- 151 (248)
T ss_pred CCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCC-------
Confidence 589999999975321 122233567999999988887544322 1 1236999998654 3321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.....|+.||.+.+.+++.+++++ |+++++++||.+.+|........ ..........+ .
T Consensus 152 -----~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~-~~~~~~~~~~~--~---------- 213 (248)
T PRK06947 152 -----NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQP-GRAARLGAQTP--L---------- 213 (248)
T ss_pred -----CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCCH-HHHHHHhhcCC--C----------
Confidence 123569999999999999998765 89999999999998743211111 11111111111 0
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
.-...++|++++++.++..+... ..|+.+.+.++
T Consensus 214 ~~~~~~e~va~~~~~l~~~~~~~----------~~G~~~~~~gg 247 (248)
T PRK06947 214 GRAGEADEVAETIVWLLSDAASY----------VTGALLDVGGG 247 (248)
T ss_pred CCCcCHHHHHHHHHHHcCccccC----------cCCceEeeCCC
Confidence 01456899999999988765421 23367776654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=172.28 Aligned_cols=226 Identities=16% Similarity=0.160 Sum_probs=152.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
|+++||||+|+||++++++|+++|++|++++|+.+.......... ...++.++++|++|.++++++++.+ +
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~----~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~ 76 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELK----EYGEVYAVKADLSDKDDLKNLVKEAWELLGG 76 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH----hcCCceEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999997644333222221 1236889999999999999888754 6
Q ss_pred ccEEEEcccccCch---hhc---cChHHHHHHHHHHHHHHH----HHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVR---YAM---QNPNSYVESNIAGFVNLL----ETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~---~~~---~~~~~~~~~N~~g~~~ll----~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
+|+||||||..... ..+ .+....+.+|+.++..+. ..+.+.....+||++||......
T Consensus 77 id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~------------ 144 (259)
T PRK08340 77 IDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEP------------ 144 (259)
T ss_pred CCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCC------------
Confidence 89999999974321 111 122346778887765444 33332222348999999876431
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC---------cHHH-HHHHHHcCCceeEEecC
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM---------AYFF-FTRDIIRGKRITVYEAP 291 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~ 291 (424)
..+...|+.+|.+.+.+++.++.++ |++++.|+||.+-.|...... .... ....+.... +
T Consensus 145 ~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p----- 217 (259)
T PRK08340 145 MPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERT--P----- 217 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccC--C-----
Confidence 1345789999999999999999875 799999999998776432100 0000 001111110 1
Q ss_pred CCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
..-+...+|+|++++.++...... ..|++..+.+|..
T Consensus 218 -----~~r~~~p~dva~~~~fL~s~~~~~----------itG~~i~vdgg~~ 254 (259)
T PRK08340 218 -----LKRTGRWEELGSLIAFLLSENAEY----------MLGSTIVFDGAMT 254 (259)
T ss_pred -----ccCCCCHHHHHHHHHHHcCccccc----------ccCceEeecCCcC
Confidence 112667899999999888765432 3447777776643
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-20 Score=170.73 Aligned_cols=201 Identities=18% Similarity=0.135 Sum_probs=145.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCc-hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNY-YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++|+|+||||+|+||++++++|+++| ++|++++|+.+. .+....+... ....+++++.+|++|.+++.++++..
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~--~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKA--AGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHh--cCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 56889999999999999999999995 899999998764 3333222221 12347899999999999877666533
Q ss_pred --CccEEEEcccccCchh-hccCh---HHHHHHHHHHHHH----HHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY-AMQNP---NSYVESNIAGFVN----LLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~-~~~~~---~~~~~~N~~g~~~----ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|++|||+|...... ...+. ...+++|+.++.+ +++.+++.+.+ +||++||...+..
T Consensus 85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~-~iv~isS~~g~~~----------- 152 (253)
T PRK07904 85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFG-QIIAMSSVAGERV----------- 152 (253)
T ss_pred cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCc-eEEEEechhhcCC-----------
Confidence 6899999999854321 11122 2468999998765 56677776654 9999999754321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
..+...|+.||++.+.+.+.+..+ .++++++++||.+..+.... ... . ...
T Consensus 153 -~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~-------------~~~---------~---~~~ 206 (253)
T PRK07904 153 -RRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAH-------------AKE---------A---PLT 206 (253)
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhcc-------------CCC---------C---CCC
Confidence 123467999999999888887654 48999999999998762210 000 0 114
Q ss_pred ccHHHHHHHHHHHhhhcc
Q 042406 301 TYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~ 318 (424)
+..+|+|+.++.++++..
T Consensus 207 ~~~~~~A~~i~~~~~~~~ 224 (253)
T PRK07904 207 VDKEDVAKLAVTAVAKGK 224 (253)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 678999999999998654
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-20 Score=170.94 Aligned_cols=166 Identities=19% Similarity=0.126 Sum_probs=131.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
...+++++||||+|+||+++++.|+++|+ +|++++|+.+.... ...++.++.+|++|.+++.++++..
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----------LGPRVVPLQLDVTDPASVAAAAEAAS 72 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----------cCCceEEEEecCCCHHHHHHHHHhcC
Confidence 35678999999999999999999999998 99999996542211 2357899999999999999998875
Q ss_pred CccEEEEcccccC-ch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAG-VR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ~~d~vi~~Ag~~~-~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+|||+||... .. ...++....+++|+.++.++++++.+ .+. ++||++||...+...
T Consensus 73 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~~sS~~~~~~~----------- 140 (238)
T PRK08264 73 DVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGG-GAIVNVLSVLSWVNF----------- 140 (238)
T ss_pred CCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcChhhccCC-----------
Confidence 4799999999832 21 12233456899999999999888653 343 389999997776421
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGP 264 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~ 264 (424)
.+...|+.+|.+.+.+.+.++.+. +++++++|||.+.++
T Consensus 141 -~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~ 182 (238)
T PRK08264 141 -PNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTD 182 (238)
T ss_pred -CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCccccc
Confidence 345789999999999999988764 899999999999776
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-20 Score=170.01 Aligned_cols=202 Identities=14% Similarity=0.103 Sum_probs=147.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+++||||+|+||++++++|+++|++|++++|+.+.......... ......++.++++|++|.+++.+++++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELL-ARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH-hhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999997654333222211 1112357899999999999998888754
Q ss_pred CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||+...... ....+..+++|+.++.++++++. +.+.+ +||++||...+... +
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~----------~- 148 (248)
T PRK08251 81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSG-HLVLISSVSAVRGL----------P- 148 (248)
T ss_pred CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-eEEEEeccccccCC----------C-
Confidence 58999999998543221 22235688999999888877663 44544 89999996543211 0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.+...|+.||++.+.+++.++.++ ++++++++||.+.++.... .+. ....+.
T Consensus 149 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~------------~~~-------------~~~~~~ 203 (248)
T PRK08251 149 GVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK------------AKS-------------TPFMVD 203 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc------------ccc-------------CCccCC
Confidence 234789999999999999888664 7999999999998762211 000 012567
Q ss_pred HHHHHHHHHHHhhhcc
Q 042406 303 IDDIVKGCLAGLDTAK 318 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~ 318 (424)
.+|.|++++.+++...
T Consensus 204 ~~~~a~~i~~~~~~~~ 219 (248)
T PRK08251 204 TETGVKALVKAIEKEP 219 (248)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 8999999999987543
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=168.41 Aligned_cols=226 Identities=13% Similarity=0.062 Sum_probs=153.3
Q ss_pred CCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEeCCCCch-------hhhHHHHHhhh-hccCCeEEEEccCCCHHH
Q 042406 76 STRGLTVLVTGAAG--FVGSHVSLALKKRGDGVLGLDNFNNYY-------ETSLKKARKGL-LERAGVFVIDADINDKSL 145 (424)
Q Consensus 76 ~~~~~~vlItGg~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~-------~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~ 145 (424)
.+++|+++||||+| +||.+++++|+++|++|++.+|..... ........... .....+.++++|++|.++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA 82 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 57889999999995 899999999999999999986532100 01111111111 123468899999999999
Q ss_pred HHHHhhcc-----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCCcccCC
Q 042406 146 LDKIFNVV-----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLE----TCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 146 v~~~~~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~----a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
+.++++.. ++|+||||||..... ...++.+..+++|+.+...+.+ .+++.+. .+||++||......
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~ 161 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSG-GRIINMTSGQFQGP 161 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCC-eEEEEEcccccCCC
Confidence 99888755 479999999975332 1222345689999999777644 4444333 38999999765431
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEe
Q 042406 213 NKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYE 289 (424)
Q Consensus 213 ~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (424)
..+...|+.+|++.+.+++.++.+ .|++++.|+||.+-.+.... .+...+....+.
T Consensus 162 ------------~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~-----~~~~~~~~~~~~---- 220 (256)
T PRK12859 162 ------------MVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTE-----EIKQGLLPMFPF---- 220 (256)
T ss_pred ------------CCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCH-----HHHHHHHhcCCC----
Confidence 145688999999999999998876 48999999999987763221 111122211111
Q ss_pred cCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 290 APDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 290 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
..+...+|+|++++.++...... ..|+++.+.+|
T Consensus 221 --------~~~~~~~d~a~~~~~l~s~~~~~----------~~G~~i~~dgg 254 (256)
T PRK12859 221 --------GRIGEPKDAARLIKFLASEEAEW----------ITGQIIHSEGG 254 (256)
T ss_pred --------CCCcCHHHHHHHHHHHhCccccC----------ccCcEEEeCCC
Confidence 12456899999999887654321 33467777654
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-20 Score=169.36 Aligned_cols=226 Identities=16% Similarity=0.116 Sum_probs=158.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-eCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGL-DNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+.+|+++||||+|+||.++++.|+++|++|+++ +|+.+........... ...++.++.+|++|.+++.++++..
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKE---EGGDAIAVKADVSSEEDVENLVEQIVE 79 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh---cCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999998 8865432222211111 2346889999999999998888754
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+|||+||...... ..++.+..+++|+.++.++++++.. .+. ++||++||...+...
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~~sS~~~~~~~--------- 149 (247)
T PRK05565 80 KFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKS-GVIVNISSIWGLIGA--------- 149 (247)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEECCHhhccCC---------
Confidence 5799999999863221 1223467899999998888777654 333 379999996654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.....|+.+|.+.+.+++.++.+. |+++++++||.+.++....- .+.....+... . ....
T Consensus 150 ---~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~--~~~~~~~~~~~-----~-------~~~~ 212 (247)
T PRK05565 150 ---SCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSF--SEEDKEGLAEE-----I-------PLGR 212 (247)
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCcccccc--ChHHHHHHHhc-----C-------CCCC
Confidence 234679999999999988887664 89999999999977643321 11111111110 0 0123
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+...+|++++++.++...... ..|+.+++.++.
T Consensus 213 ~~~~~~va~~~~~l~~~~~~~----------~~g~~~~~~~~~ 245 (247)
T PRK05565 213 LGKPEEIAKVVLFLASDDASY----------ITGQIITVDGGW 245 (247)
T ss_pred CCCHHHHHHHHHHHcCCccCC----------ccCcEEEecCCc
Confidence 678899999999988765432 344888887753
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-20 Score=169.95 Aligned_cols=205 Identities=13% Similarity=0.086 Sum_probs=149.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
++|+++||||+|+||..++++|+++|++|++++|+.+........... ...++.++.+|++|.+++.++++.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS---TGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---CCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 567899999999999999999999999999999975433222111111 1346889999999999988887753
Q ss_pred -CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||...... ..++.+..+++|+.++.++++.+ ++.+. ++||++||...++..
T Consensus 82 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~~~----------- 149 (241)
T PRK07454 82 GCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGG-GLIINVSSIAARNAF----------- 149 (241)
T ss_pred CCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC-cEEEEEccHHhCcCC-----------
Confidence 5799999999754321 12234668999999988877665 33443 389999998877531
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
.+...|+.+|.+.+.+++.++.+ .|+++++||||.+-++...... ....+ .....+
T Consensus 150 -~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~-------------~~~~~-------~~~~~~ 208 (241)
T PRK07454 150 -PQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTET-------------VQADF-------DRSAML 208 (241)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCcccccc-------------ccccc-------ccccCC
Confidence 34578999999999999988754 3899999999999876422110 00000 011257
Q ss_pred cHHHHHHHHHHHhhhcc
Q 042406 302 YIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~ 318 (424)
..+|+|++++.++..+.
T Consensus 209 ~~~~va~~~~~l~~~~~ 225 (241)
T PRK07454 209 SPEQVAQTILHLAQLPP 225 (241)
T ss_pred CHHHHHHHHHHHHcCCc
Confidence 89999999999998764
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-20 Score=171.77 Aligned_cols=230 Identities=12% Similarity=0.060 Sum_probs=155.2
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCc--hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh
Q 042406 76 STRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNY--YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 76 ~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
++++|+++||||+ ++||++++++|+++|++|++.+|+.+. ..+...+.... ...+.++.+|++|.++++++++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~ 79 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP---LNPSLFLPCDVQDDAQIEETFE 79 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc---cCcceEeecCcCCHHHHHHHHH
Confidence 3578999999986 899999999999999999988775432 11222222111 1346789999999999998887
Q ss_pred cc-----CccEEEEcccccCc-----hh---hccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCC
Q 042406 152 VV-----AFTHVMHLAAQAGV-----RY---AMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVP 217 (424)
Q Consensus 152 ~~-----~~d~vi~~Ag~~~~-----~~---~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~ 217 (424)
.+ ++|++|||||.... .. ..++.+..+++|+.++..+++++.... ...+||++||......
T Consensus 80 ~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~~----- 154 (258)
T PRK07370 80 TIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVRA----- 154 (258)
T ss_pred HHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccccC-----
Confidence 65 68999999997531 11 122346789999999888877664321 1248999999654321
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
......|++||++.+.+++.++.++ |+++++|+||.|-.+-...-...+.....+....+
T Consensus 155 -------~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p---------- 217 (258)
T PRK07370 155 -------IPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEKAP---------- 217 (258)
T ss_pred -------CcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhcCC----------
Confidence 1335689999999999999998775 79999999999977632100000111111111111
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..-+...+|++.+++.++...... ..|+++.+.+|.
T Consensus 218 --~~r~~~~~dva~~~~fl~s~~~~~----------~tG~~i~vdgg~ 253 (258)
T PRK07370 218 --LRRTVTQTEVGNTAAFLLSDLASG----------ITGQTIYVDAGY 253 (258)
T ss_pred --cCcCCCHHHHHHHHHHHhChhhcc----------ccCcEEEECCcc
Confidence 112667899999999988754432 334777776553
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-20 Score=168.28 Aligned_cols=216 Identities=13% Similarity=0.087 Sum_probs=151.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|++|||||+|+||++++++|+++|++|++++|+.+..... . ...++.++.+|++|.+++.+++++.
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 73 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDG---L-----RQAGAQCIQADFSTNAGIMAFIDELKQHTD 73 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHH---H-----HHcCCEEEEcCCCCHHHHHHHHHHHHhhCC
Confidence 46899999999999999999999999999999975432111 1 1124788999999999998888765
Q ss_pred CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCC-CCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDP-QPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||...... ..++.+..+++|+.++..+.+++.. .+. ..++|++||......
T Consensus 74 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~------------ 141 (236)
T PRK06483 74 GLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKG------------ 141 (236)
T ss_pred CccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccC------------
Confidence 4899999999743321 2233467899999998776665543 221 237999998654321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
......|+.||.+.+.+++.++.++ ++++++|+||.+..+..... ..........++.. +..
T Consensus 142 ~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~~~----~~~~~~~~~~~~~~------------~~~ 205 (236)
T PRK06483 142 SDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGDDA----AYRQKALAKSLLKI------------EPG 205 (236)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCCCH----HHHHHHhccCcccc------------CCC
Confidence 1335689999999999999999876 69999999999854322111 12222222222111 345
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+|++.++..++... . ..|+++.+.+|.
T Consensus 206 ~~~va~~~~~l~~~~-~-----------~~G~~i~vdgg~ 233 (236)
T PRK06483 206 EEEIIDLVDYLLTSC-Y-----------VTGRSLPVDGGR 233 (236)
T ss_pred HHHHHHHHHHHhcCC-C-----------cCCcEEEeCccc
Confidence 799999999988522 1 344788887764
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-20 Score=170.92 Aligned_cols=229 Identities=11% Similarity=0.078 Sum_probs=155.5
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+.+|+++||||+ ++||.++++.|+++|++|++.+|+.. ..+.......+ . ..+..+++|++|.++++++++.+
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~-~--~~~~~~~~Dl~~~~~v~~~~~~~ 82 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAE-L--GAFVAGHCDVTDEASIDAVFETL 82 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHh-c--CCceEEecCCCCHHHHHHHHHHH
Confidence 4578999999997 89999999999999999998887421 11222222111 1 23567899999999999888764
Q ss_pred -----CccEEEEcccccCc-----h---hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGV-----R---YAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~-----~---~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|++|||||.... . ...++.+..+++|+.++..+++++..... ..++|++||.+....
T Consensus 83 ~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~------- 155 (272)
T PRK08159 83 EKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKV------- 155 (272)
T ss_pred HHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccC-------
Confidence 58999999997532 1 11233467899999999999887765321 248999998544321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
......|++||++.+.+++.++.++ |+++++|+||.+..+........ ......... ..++
T Consensus 156 -----~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~-~~~~~~~~~-~~p~--------- 219 (272)
T PRK08159 156 -----MPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDF-RYILKWNEY-NAPL--------- 219 (272)
T ss_pred -----CCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcc-hHHHHHHHh-CCcc---------
Confidence 1234679999999999999998774 79999999999976421100000 001111110 1111
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.-+...+|+|++++.++...... ..|+++.+.+|.
T Consensus 220 -~r~~~peevA~~~~~L~s~~~~~----------itG~~i~vdgG~ 254 (272)
T PRK08159 220 -RRTVTIEEVGDSALYLLSDLSRG----------VTGEVHHVDSGY 254 (272)
T ss_pred -cccCCHHHHHHHHHHHhCccccC----------ccceEEEECCCc
Confidence 12567899999999998754422 344788888764
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-20 Score=174.09 Aligned_cols=226 Identities=14% Similarity=0.107 Sum_probs=154.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC---------CchhhhHHHHHhhhhccCCeEEEEccCCCHHHH
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN---------NYYETSLKKARKGLLERAGVFVIDADINDKSLL 146 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v 146 (424)
.+++|+++||||+++||.++++.|+++|++|++++|+. +.......... ....++.++.+|++|.+++
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~Dv~~~~~v 79 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIV---AAGGEAVANGDDIADWDGA 79 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHH---hcCCceEEEeCCCCCHHHH
Confidence 36789999999999999999999999999999998864 21111111111 1134678899999999998
Q ss_pred HHHhhcc-----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cC-----CCCeEEEecCCc
Q 042406 147 DKIFNVV-----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SD-----PQPAIVWASSSS 208 (424)
Q Consensus 147 ~~~~~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~-----~~~~~v~~SS~~ 208 (424)
.++++.+ ++|+||||||..... ...++.+..+++|+.++.++++++.. .. ...+||++||.+
T Consensus 80 ~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~ 159 (286)
T PRK07791 80 ANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGA 159 (286)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchh
Confidence 8887654 689999999985432 12233467899999998888776642 11 113899999965
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCce
Q 042406 209 VYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRI 285 (424)
Q Consensus 209 vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 285 (424)
.+... .....|+.||.+.+.+++.++.+ .|+++++|+|| +..+... ..........+
T Consensus 160 ~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~~------~~~~~~~~~~~- 219 (286)
T PRK07791 160 GLQGS------------VGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMTE------TVFAEMMAKPE- 219 (286)
T ss_pred hCcCC------------CCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcch------hhHHHHHhcCc-
Confidence 53211 33578999999999999998876 48999999998 4332110 11111111110
Q ss_pred eEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 286 TVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
.....+...+|+|.+++.++...... ..|+.+.+.+|..
T Consensus 220 ---------~~~~~~~~pedva~~~~~L~s~~~~~----------itG~~i~vdgG~~ 258 (286)
T PRK07791 220 ---------EGEFDAMAPENVSPLVVWLGSAESRD----------VTGKVFEVEGGKI 258 (286)
T ss_pred ---------ccccCCCCHHHHHHHHHHHhCchhcC----------CCCcEEEEcCCce
Confidence 01112567899999999988654321 3447888876653
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-20 Score=188.83 Aligned_cols=227 Identities=15% Similarity=0.094 Sum_probs=161.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
...+|+++||||+|+||.+++++|+++|++|++++|+.+..+.... .. ...+.++.+|++|+++++++++..
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~-----~~-~~~~~~~~~D~~~~~~~~~~~~~~~~ 339 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAE-----AL-GDEHLSVQADITDEAAVESAFAQIQA 339 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----Hh-CCceeEEEccCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999996543322211 11 245678999999999999888764
Q ss_pred ---CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||.... ....++.+..+++|+.|+.++++++.... ...+||++||.+.+..
T Consensus 340 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~------------ 407 (520)
T PRK06484 340 RWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLA------------ 407 (520)
T ss_pred HcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCC------------
Confidence 58999999997532 11223446789999999999988876542 1248999999766532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC-cHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM-AYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
..+...|+++|++.+.+++.++.++ |+++++|+||.|.++...... ........+.+..+. .-+
T Consensus 408 ~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 475 (520)
T PRK06484 408 LPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIPL------------GRL 475 (520)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCCC------------CCC
Confidence 1345789999999999999998765 899999999999887422100 000111122221111 125
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..++|+|++++.++...... ..|+++.+.+|.
T Consensus 476 ~~~~dia~~~~~l~s~~~~~----------~~G~~i~vdgg~ 507 (520)
T PRK06484 476 GDPEEVAEAIAFLASPAASY----------VNGATLTVDGGW 507 (520)
T ss_pred cCHHHHHHHHHHHhCccccC----------ccCcEEEECCCc
Confidence 67899999999988754321 344788887663
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-20 Score=167.98 Aligned_cols=203 Identities=15% Similarity=0.125 Sum_probs=149.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+.+++|+||||+|+||++++++|+++|++|++++|+.+.......... ...+++++++|++|.+++.+++++.
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELN----NKGNVLGLAADVRDEADVQRAVDAIVAA 79 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHh----ccCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999996543322222111 1156889999999999998888754
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS---DPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~---~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+|||+||...... ..++.+..+++|+.++.++++++.+. +. +++|++||...+...
T Consensus 80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~iv~~ss~~~~~~~----------- 147 (237)
T PRK07326 80 FGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGG-GYIINISSLAGTNFF----------- 147 (237)
T ss_pred cCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCC-eEEEEECChhhccCC-----------
Confidence 6799999998754321 12234578999999999988877543 32 389999997654321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
.....|+.+|++.+.+++.+..+ .|+++++||||.+.++...... . .. ....+
T Consensus 148 -~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~-----------~----------~~--~~~~~ 203 (237)
T PRK07326 148 -AGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTP-----------S----------EK--DAWKI 203 (237)
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccccccc-----------c----------hh--hhccC
Confidence 34567999999999999888654 4899999999999876332110 0 00 00136
Q ss_pred cHHHHHHHHHHHhhhccc
Q 042406 302 YIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~~ 319 (424)
..+|++++++.++..+..
T Consensus 204 ~~~d~a~~~~~~l~~~~~ 221 (237)
T PRK07326 204 QPEDIAQLVLDLLKMPPR 221 (237)
T ss_pred CHHHHHHHHHHHHhCCcc
Confidence 789999999999987753
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=169.29 Aligned_cols=228 Identities=13% Similarity=0.075 Sum_probs=152.5
Q ss_pred CCCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGA--AGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg--~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+++|+++|||| +++||.+++++|+++|++|++.+|+... +...+...+ . ...+.++.+|++|.++++++++.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~--~~~~~~~~~-~-~~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRAL--RLTERIAKR-L-PEPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccch--hHHHHHHHh-c-CCCCcEEeCCCCCHHHHHHHHHHH
Confidence 367899999999 8999999999999999999999985421 111111111 1 135779999999999998887654
Q ss_pred -----CccEEEEcccccCc-----hhh---ccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGV-----RYA---MQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~-----~~~---~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|++|||||.... ... .++.+..+++|+.++..+.+++...-. ..++|++|+.+..+
T Consensus 80 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~~-------- 151 (256)
T PRK07889 80 REHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATVA-------- 151 (256)
T ss_pred HHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeeccccc--------
Confidence 68999999998532 111 122345799999998888777654321 23788887643211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
......|++||++.+.+++.++.++ |+++++|+||.+..+..............+....+ +
T Consensus 152 -----~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p--~--------- 215 (256)
T PRK07889 152 -----WPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAP--L--------- 215 (256)
T ss_pred -----CCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCc--c---------
Confidence 0234679999999999999998764 89999999999987632110000111111111111 1
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
.+.+...+|+|++++.++...... ..|+++.+.++
T Consensus 216 ~~~~~~p~evA~~v~~l~s~~~~~----------~tG~~i~vdgg 250 (256)
T PRK07889 216 GWDVKDPTPVARAVVALLSDWFPA----------TTGEIVHVDGG 250 (256)
T ss_pred ccccCCHHHHHHHHHHHhCccccc----------ccceEEEEcCc
Confidence 012567899999999988765432 33477777655
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=169.03 Aligned_cols=229 Identities=14% Similarity=0.092 Sum_probs=159.3
Q ss_pred CCCCCeEEEEcCCC-hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAG-FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.+.+|+++||||+| +||+.+++.|+++|++|++.+|+.+..+........ .....++.++++|++|.+++.++++.+
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 92 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAA-ELGLGRVEAVVCDVTSEAQVDALIDAAV 92 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-hcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 45689999999997 899999999999999999999876543333222211 112246889999999999999888754
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||...... ..++....+++|+.++..+++++.. .+...+||++||...+..
T Consensus 93 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~--------- 163 (262)
T PRK07831 93 ERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRA--------- 163 (262)
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCC---------
Confidence 6799999999753221 1223456888999998887776543 331238899888554321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
..+...|+.+|++.+.+++.++.+ +|+++++|+||.+..|..... ........+....++ .
T Consensus 164 ---~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~-~~~~~~~~~~~~~~~------------~ 227 (262)
T PRK07831 164 ---QHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKV-TSAELLDELAAREAF------------G 227 (262)
T ss_pred ---CCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccc-cCHHHHHHHHhcCCC------------C
Confidence 134568999999999999999876 489999999999998753211 111233333332221 1
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGN 340 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 340 (424)
-+...+|+|++++.++...... ..|+++.+.+
T Consensus 228 r~~~p~~va~~~~~l~s~~~~~----------itG~~i~v~~ 259 (262)
T PRK07831 228 RAAEPWEVANVIAFLASDYSSY----------LTGEVVSVSS 259 (262)
T ss_pred CCcCHHHHHHHHHHHcCchhcC----------cCCceEEeCC
Confidence 2566799999999988765422 3446777665
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-20 Score=168.30 Aligned_cols=196 Identities=17% Similarity=0.141 Sum_probs=145.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--Ccc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--AFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--~~d 156 (424)
+++++||||+|+||++++++|+++|++|++++|+.+..+. ... ...++.++.+|++|.+++++++++. .+|
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~----~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d 73 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDE----LHT---QSANIFTLAFDVTDHPGTKAALSQLPFIPE 73 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHH----HHH---hcCCCeEEEeeCCCHHHHHHHHHhcccCCC
Confidence 3689999999999999999999999999999996432211 111 1246889999999999999999875 479
Q ss_pred EEEEcccccCc-hh---hccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcc-cCCCCCCCCCCCCCCCCCCCh
Q 042406 157 HVMHLAAQAGV-RY---AMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSV-YGVNKKVPFSEKDRTDQPASL 230 (424)
Q Consensus 157 ~vi~~Ag~~~~-~~---~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~v-yg~~~~~~~~e~~~~~~~~~~ 230 (424)
.+|||||.... .. ..++.+..+++|+.|+.++++++.... ..+++|++||... ++. .....
T Consensus 74 ~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~-------------~~~~~ 140 (240)
T PRK06101 74 LWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELAL-------------PRAEA 140 (240)
T ss_pred EEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCC-------------CCCch
Confidence 99999986432 11 112235689999999999999887631 1237888888543 321 34568
Q ss_pred HHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHH
Q 042406 231 YAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIV 307 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 307 (424)
|+++|++.+.+++.++.+ .|+++++++||.++++...... .. .+ ..+..+|+|
T Consensus 141 Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~------------~~--------~~----~~~~~~~~a 196 (240)
T PRK06101 141 YGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNT------------FA--------MP----MIITVEQAS 196 (240)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCC------------CC--------CC----cccCHHHHH
Confidence 999999999999998754 4899999999999987433110 00 00 146789999
Q ss_pred HHHHHHhhhcc
Q 042406 308 KGCLAGLDTAK 318 (424)
Q Consensus 308 ~a~~~~~~~~~ 318 (424)
+.++..++...
T Consensus 197 ~~i~~~i~~~~ 207 (240)
T PRK06101 197 QEIRAQLARGK 207 (240)
T ss_pred HHHHHHHhcCC
Confidence 99999988754
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=168.95 Aligned_cols=229 Identities=12% Similarity=0.055 Sum_probs=153.5
Q ss_pred CCCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGA--AGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg--~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+++|+++|||| +++||.+++++|+++|++|++.+|.... .+.......+ . ....++.+|++|+++++++++..
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~-~--~~~~~~~~Dv~d~~~v~~~~~~~ 78 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRF-KDRITEFAAE-F--GSDLVFPCDVASDEQIDALFASL 78 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHH-HHHHHHHHHh-c--CCcceeeccCCCHHHHHHHHHHH
Confidence 367899999996 6899999999999999999998764221 1111111111 1 22357899999999999888764
Q ss_pred -----CccEEEEcccccCch---------hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVR---------YAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~---------~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~ 218 (424)
++|++|||||..... ...++.+..+++|+.++..+.+++...- ...++|++||.+..-.
T Consensus 79 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~------ 152 (260)
T PRK06997 79 GQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERV------ 152 (260)
T ss_pred HHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccC------
Confidence 689999999975321 1122345689999999888877765432 1248999998654211
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
......|++||++.+.+++.++.++ |+++++|.||.|-.+-...-.........+.... ++
T Consensus 153 ------~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~--p~-------- 216 (260)
T PRK06997 153 ------VPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNA--PL-------- 216 (260)
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhHHHHHHhcC--cc--------
Confidence 1234679999999999999998764 8999999999987652210000011111111111 11
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.-+...+|++++++.++...... ..|+++.+.++.
T Consensus 217 --~r~~~pedva~~~~~l~s~~~~~----------itG~~i~vdgg~ 251 (260)
T PRK06997 217 --RRNVTIEEVGNVAAFLLSDLASG----------VTGEITHVDSGF 251 (260)
T ss_pred --cccCCHHHHHHHHHHHhCccccC----------cceeEEEEcCCh
Confidence 12567899999999998764432 344788887664
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-20 Score=174.47 Aligned_cols=192 Identities=21% Similarity=0.135 Sum_probs=147.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
....+++++|||||++||.++|++|+++|++|++.+|+.+..++....... ......+.++++|++|.++++++.+..
T Consensus 31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~-~~~~~~i~~~~lDLssl~SV~~fa~~~~ 109 (314)
T KOG1208|consen 31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQK-GKANQKIRVIQLDLSSLKSVRKFAEEFK 109 (314)
T ss_pred ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 356779999999999999999999999999999999988766666655554 345568899999999999999988766
Q ss_pred ----CccEEEEcccccCchh--hccChHHHHHHHHHHHHHH----HHHHHhcCCCCeEEEecCCcccCCCCCCCCC-CCC
Q 042406 154 ----AFTHVMHLAAQAGVRY--AMQNPNSYVESNIAGFVNL----LETCKSSDPQPAIVWASSSSVYGVNKKVPFS-EKD 222 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~--~~~~~~~~~~~N~~g~~~l----l~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~-e~~ 222 (424)
+.|++|||||++.... ..+..|..+.+|+.|+..| ++.++.... .|||++||.......+...+. +..
T Consensus 110 ~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~-~RIV~vsS~~~~~~~~~~~l~~~~~ 188 (314)
T KOG1208|consen 110 KKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP-SRIVNVSSILGGGKIDLKDLSGEKA 188 (314)
T ss_pred hcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCC-CCEEEEcCccccCccchhhccchhc
Confidence 6799999999987654 3345689999999996554 555666665 499999997661111111222 211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCC
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRP 268 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~ 268 (424)
........|+.||.+...++.++.++. |+.++.+.||.+.++.-..
T Consensus 189 ~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~r 236 (314)
T KOG1208|consen 189 KLYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLSR 236 (314)
T ss_pred cCccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccceec
Confidence 112233469999999999999999876 6999999999999885443
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-20 Score=168.57 Aligned_cols=201 Identities=14% Similarity=0.084 Sum_probs=147.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--Ccc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--AFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--~~d 156 (424)
+|+++||||+|+||.++++.|+++|++|++++|+.+.......... .....++.++++|++|.+++++++++. ++|
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLR--ARGAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHH--HhcCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 4789999999999999999999999999999997654333222221 123457899999999999999888764 579
Q ss_pred EEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCC
Q 042406 157 HVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPA 228 (424)
Q Consensus 157 ~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~ 228 (424)
+|||+||...... ..++....+++|+.++.++++++.. .+. ++||++||...... ....
T Consensus 79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~------------~~~~ 145 (243)
T PRK07102 79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGS-GTIVGISSVAGDRG------------RASN 145 (243)
T ss_pred EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC-CEEEEEecccccCC------------CCCC
Confidence 9999999754321 1222346899999999988887654 344 38999998643221 0234
Q ss_pred ChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHH
Q 042406 229 SLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDD 305 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 305 (424)
..|+.+|++.+.+++.++.+. |+++++++||.++++.... .... . .-.+.++|
T Consensus 146 ~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~--------------~~~~-----~-----~~~~~~~~ 201 (243)
T PRK07102 146 YVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAG--------------LKLP-----G-----PLTAQPEE 201 (243)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhc--------------cCCC-----c-----cccCCHHH
Confidence 679999999999999987653 8999999999999872210 0000 0 12567899
Q ss_pred HHHHHHHHhhhcc
Q 042406 306 IVKGCLAGLDTAK 318 (424)
Q Consensus 306 va~a~~~~~~~~~ 318 (424)
++++++.++++..
T Consensus 202 ~a~~i~~~~~~~~ 214 (243)
T PRK07102 202 VAKDIFRAIEKGK 214 (243)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999888653
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-20 Score=172.73 Aligned_cols=222 Identities=14% Similarity=0.101 Sum_probs=156.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||+++++.|+++|++|++++|+.... ...++.++.+|++|.++++++++..
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~------------~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDG------------QHENYQFVPTDVSSAEEVNHTVAEIIE 73 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccc------------ccCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999865421 1236789999999999999888764
Q ss_pred ---CccEEEEcccccCch-------------hhccChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR-------------YAMQNPNSYVESNIAGFVNLLETCKSSD---PQPAIVWASSSSVYGVNK 214 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~-------------~~~~~~~~~~~~N~~g~~~ll~a~~~~~---~~~~~v~~SS~~vyg~~~ 214 (424)
++|+||||||..... ...++.+..+++|+.++.++++++.... ...+||++||...+...
T Consensus 74 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~- 152 (266)
T PRK06171 74 KFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGS- 152 (266)
T ss_pred HcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCC-
Confidence 679999999974321 1223345689999999999888876432 12389999997665321
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEecccc-CCCCCCCC----------cHHHHHHHHH
Q 042406 215 KVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVY-GPWGRPDM----------AYFFFTRDII 280 (424)
Q Consensus 215 ~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~-G~~~~~~~----------~~~~~~~~~~ 280 (424)
.....|+.+|.+.+.+++.++.++ |+++++|+||.+. .+...... ....+...+.
T Consensus 153 -----------~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (266)
T PRK06171 153 -----------EGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAGYT 221 (266)
T ss_pred -----------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhhhc
Confidence 345789999999999999998764 8999999999885 22111000 0001111111
Q ss_pred cCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 281 RGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
.....+ ..-+...+|+|.++..++...... ..|+++++.+|
T Consensus 222 ~~~~~p----------~~r~~~~~eva~~~~fl~s~~~~~----------itG~~i~vdgg 262 (266)
T PRK06171 222 KTSTIP----------LGRSGKLSEVADLVCYLLSDRASY----------ITGVTTNIAGG 262 (266)
T ss_pred cccccc----------CCCCCCHHHhhhheeeeecccccc----------ceeeEEEecCc
Confidence 100111 112567899999999888654432 34478887765
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.9e-20 Score=167.04 Aligned_cols=200 Identities=18% Similarity=0.155 Sum_probs=143.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-CccE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-AFTH 157 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~~d~ 157 (424)
+|+++||||+|+||+++++.|+++ ++|++++|+.+.... ... ...+++++++|++|.+++.++++.. ++|+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~----~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 74 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDE----LAA---ELPGATPFPVDLTDPEAIAAAVEQLGRLDV 74 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHH----HHH---HhccceEEecCCCCHHHHHHHHHhcCCCCE
Confidence 578999999999999999999999 999999996432111 111 1136889999999999999999865 5799
Q ss_pred EEEcccccCchhh----ccChHHHHHHHHHHH----HHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 042406 158 VMHLAAQAGVRYA----MQNPNSYVESNIAGF----VNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPAS 229 (424)
Q Consensus 158 vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~----~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~ 229 (424)
|||+||....... .++....+.+|+.+. .++++++++.+ .++|++||...++.. .+..
T Consensus 75 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~v~~ss~~~~~~~------------~~~~ 140 (227)
T PRK08219 75 LVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH--GHVVFINSGAGLRAN------------PGWG 140 (227)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CeEEEEcchHhcCcC------------CCCc
Confidence 9999998543211 122345788999984 45555555553 389999998776431 3457
Q ss_pred hHHHHHHHHHHHHHHHHHHh-C-CcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHH
Q 042406 230 LYAATKKAGEAIAHAYNHIY-G-LSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIV 307 (424)
Q Consensus 230 ~Y~~sK~~~e~~~~~~~~~~-~-i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 307 (424)
.|+.+|.+.+.+++.++.+. + +++++++||.+.++... .+...... . .....+++++|++
T Consensus 141 ~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~----------~~~~~~~~-~-------~~~~~~~~~~dva 202 (227)
T PRK08219 141 SYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQR----------GLVAQEGG-E-------YDPERYLRPETVA 202 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhh----------hhhhhhcc-c-------cCCCCCCCHHHHH
Confidence 89999999999999887653 5 89999999987765221 11111000 0 1123589999999
Q ss_pred HHHHHHhhhcc
Q 042406 308 KGCLAGLDTAK 318 (424)
Q Consensus 308 ~a~~~~~~~~~ 318 (424)
++++.+++++.
T Consensus 203 ~~~~~~l~~~~ 213 (227)
T PRK08219 203 KAVRFAVDAPP 213 (227)
T ss_pred HHHHHHHcCCC
Confidence 99999997654
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=168.22 Aligned_cols=218 Identities=16% Similarity=0.078 Sum_probs=146.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
|+++||||+|+||.+++++|+++|++|++++|+.+.......... ....++.++.+|++|.+++.++++.. +
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEIN---QAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999996443222221111 12346889999999999998887654 5
Q ss_pred ccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|+||||||..... ....+.+..+++|+.++..+++++. +.+...+||++||....... .
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~ 145 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGN------------P 145 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCC------------C
Confidence 79999999975432 1223345789999999887766553 33333489999985543211 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEE---ecCCCCcccccc
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVY---EAPDGASVARDF 300 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 300 (424)
..+.|+.+|++.+.+++.++.++ ++++++++||.+.++... .+............- ...........+
T Consensus 146 ~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (254)
T TIGR02415 146 ILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWE------EIDEETSEIAGKPIGEGFEEFSSEIALGRP 219 (254)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhh------hhhhhhhhcccCchHHHHHHHHhhCCCCCC
Confidence 45789999999999999988775 799999999998765321 011000000000000 000000001127
Q ss_pred ccHHHHHHHHHHHhhhcc
Q 042406 301 TYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~ 318 (424)
..++|+++++..++....
T Consensus 220 ~~~~~~a~~~~~l~~~~~ 237 (254)
T TIGR02415 220 SEPEDVAGLVSFLASEDS 237 (254)
T ss_pred CCHHHHHHHHHhhccccc
Confidence 888999999999988764
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=169.03 Aligned_cols=226 Identities=15% Similarity=0.091 Sum_probs=148.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC-chhhhHHHHHhhhhccCCeEEEEccCCCHHHH----HHHhhcc-
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN-YYETSLKKARKGLLERAGVFVIDADINDKSLL----DKIFNVV- 153 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v----~~~~~~~- 153 (424)
++++||||+|+||++++++|+++|++|++++|... .......+... .....+.++.+|++|.+++ +++++..
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~ 79 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNA--RRPNSAVTCQADLSNSATLFSRCEAIIDACF 79 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHh--ccCCceEEEEccCCCchhhHHHHHHHHHHHH
Confidence 46999999999999999999999999999876432 22221111111 1123567899999998755 3343321
Q ss_pred ----CccEEEEcccccCchhhc----c-----------ChHHHHHHHHHHHHHHHHHHHhcC---------CCCeEEEec
Q 042406 154 ----AFTHVMHLAAQAGVRYAM----Q-----------NPNSYVESNIAGFVNLLETCKSSD---------PQPAIVWAS 205 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~~~----~-----------~~~~~~~~N~~g~~~ll~a~~~~~---------~~~~~v~~S 205 (424)
++|+||||||........ . +....+++|+.++..+++++.... ...++|++|
T Consensus 80 ~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~ 159 (267)
T TIGR02685 80 RAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLC 159 (267)
T ss_pred HccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEeh
Confidence 589999999975431111 1 134679999999988887654321 112677787
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcC
Q 042406 206 SSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRG 282 (424)
Q Consensus 206 S~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~ 282 (424)
|..... +..+...|++||++.+.+++.++.+ .|+++++|+||.+..|..... .........
T Consensus 160 s~~~~~------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~~----~~~~~~~~~ 223 (267)
T TIGR02685 160 DAMTDQ------------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMPF----EVQEDYRRK 223 (267)
T ss_pred hhhccC------------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccch----hHHHHHHHh
Confidence 754432 1144578999999999999999877 489999999999876633211 111222211
Q ss_pred CceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 283 KRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
.+ + . ..+...+|++++++.++...... ..|+.+.+.++..+
T Consensus 224 ~~--~-----~----~~~~~~~~va~~~~~l~~~~~~~----------~~G~~~~v~gg~~~ 264 (267)
T TIGR02685 224 VP--L-----G----QREASAEQIADVVIFLVSPKAKY----------ITGTCIKVDGGLSL 264 (267)
T ss_pred CC--C-----C----cCCCCHHHHHHHHHHHhCcccCC----------cccceEEECCceec
Confidence 11 1 0 11457899999999988654321 34478888776543
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-20 Score=170.08 Aligned_cols=204 Identities=16% Similarity=0.141 Sum_probs=145.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+++||||+|+||++++++|+++|++|++++|+.+...+... .....++.++++|++|.+++.++++++
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA-----ELGAGNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-----HhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999996543222111 112357899999999999998887643
Q ss_pred -CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcc-cCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSV-YGVNKKVPFSEKDR 223 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~v-yg~~~~~~~~e~~~ 223 (424)
++|+||||||....... .++.+..+++|+.++.++++++.+ .+. .+||++||... ++.
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~----------- 143 (260)
T PRK08267 76 GRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPG-ARVINTSSASAIYGQ----------- 143 (260)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CEEEEeCchhhCcCC-----------
Confidence 57999999998643221 233467899999999999887743 333 38999998644 442
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.....|+.||.+.+.+++.++.+. ++++++|+||.+..+...... ......... ...-.
T Consensus 144 --~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~--~~~~~~~~~--------------~~~~~ 205 (260)
T PRK08267 144 --PGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTS--NEVDAGSTK--------------RLGVR 205 (260)
T ss_pred --CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCccccccc--chhhhhhHh--------------hccCC
Confidence 234689999999999999988653 799999999998765322100 000000000 00113
Q ss_pred ccHHHHHHHHHHHhhhc
Q 042406 301 TYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~ 317 (424)
+..+|+|++++.+++..
T Consensus 206 ~~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 206 LTPEDVAEAVWAAVQHP 222 (260)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 56799999999998654
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-20 Score=169.99 Aligned_cols=204 Identities=21% Similarity=0.154 Sum_probs=145.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc------
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV------ 153 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~------ 153 (424)
|+|+||||+|+||.++++.|+++|++|++++|+.+..+. . ...+++++.+|++|.+++.++++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~----~-----~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 73 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVAR----M-----NSLGFTGILLDLDDPESVERAADEVIALTDN 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHH----H-----HhCCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999996532211 1 1135788999999999887776543
Q ss_pred CccEEEEcccccCchh----hccChHHHHHHHHHHHHHH----HHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNL----LETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l----l~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
.+|.+||+||...... ..++.+..+++|+.|+.++ ++.+++.+.+ ++|++||...+.. .
T Consensus 74 ~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-~iv~~ss~~~~~~------------~ 140 (256)
T PRK08017 74 RLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEG-RIVMTSSVMGLIS------------T 140 (256)
T ss_pred CCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCC-EEEEEcCcccccC------------C
Confidence 4699999999743221 2223457899999998775 6666666654 8999999644321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCC-ceeEEecCCCCccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGK-RITVYEAPDGASVARDFT 301 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i 301 (424)
.....|+.+|++.|.+.+.++.. .++++++++||.+.++... .+.... ..... ..+...+.++
T Consensus 141 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~----------~~~~~~~~~~~~---~~~~~~~~~~ 207 (256)
T PRK08017 141 PGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTD----------NVNQTQSDKPVE---NPGIAARFTL 207 (256)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhh----------cccchhhccchh---hhHHHhhcCC
Confidence 34578999999999988876543 4899999999887654221 111111 11111 1223345689
Q ss_pred cHHHHHHHHHHHhhhcc
Q 042406 302 YIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~ 318 (424)
+++|+++++..++++..
T Consensus 208 ~~~d~a~~~~~~~~~~~ 224 (256)
T PRK08017 208 GPEAVVPKLRHALESPK 224 (256)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 99999999999997765
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-19 Score=167.22 Aligned_cols=212 Identities=14% Similarity=0.176 Sum_probs=148.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhh---HHHHHhhh-hccCCeEEEEccCCCHHHHHHHhh
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETS---LKKARKGL-LERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
++.+|+++||||+|+||.++++.|+++|++|++++|+.+..... ........ ....++.++.+|++|.+++.++++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 45788999999999999999999999999999999976432111 11111111 123468899999999999998887
Q ss_pred cc-----CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCCCC
Q 042406 152 VV-----AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKSS---DPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 152 ~~-----~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~~---~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
.. ++|+||||||....... .++.+..+++|+.++.++++++... ....++|++||.......
T Consensus 83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~------ 156 (273)
T PRK08278 83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPK------ 156 (273)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcccc------
Confidence 65 68999999997543222 2234668999999999999888642 112388999885322110
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEecc-ccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFT-VYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~-v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
...+...|+.||.+.|.+++.++.++ ++++++|+||. +-.+ ....+..+. .
T Consensus 157 ----~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~----------~~~~~~~~~-----------~ 211 (273)
T PRK08278 157 ----WFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATA----------AVRNLLGGD-----------E 211 (273)
T ss_pred ----ccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccH----------HHHhccccc-----------c
Confidence 01345789999999999999998775 89999999984 4332 111111111 0
Q ss_pred cccccccHHHHHHHHHHHhhhcc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
....+...+|+|++++.++....
T Consensus 212 ~~~~~~~p~~va~~~~~l~~~~~ 234 (273)
T PRK08278 212 AMRRSRTPEIMADAAYEILSRPA 234 (273)
T ss_pred cccccCCHHHHHHHHHHHhcCcc
Confidence 11135678999999999887654
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.5e-19 Score=164.95 Aligned_cols=206 Identities=14% Similarity=0.089 Sum_probs=144.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC--HHHHHHHhhc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND--KSLLDKIFNV- 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~v~~~~~~- 152 (424)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+........... .....+.++.+|++| .+++.++++.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~i 80 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVE--AGHPEPFAIRFDLMSAEEKEFEQFAATI 80 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHH--cCCCCcceEEeeecccchHHHHHHHHHH
Confidence 46789999999999999999999999999999999976543332222211 122356788999976 3455544431
Q ss_pred -----cCccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCC
Q 042406 153 -----VAFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 153 -----~~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~ 218 (424)
.++|+||||||.... ....++....+++|+.|+.++++++.+ .+. .++|++||.....
T Consensus 81 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~~ss~~~~~------- 152 (239)
T PRK08703 81 AEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPD-ASVIFVGESHGET------- 152 (239)
T ss_pred HHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCC-CEEEEEecccccc-------
Confidence 157999999997432 111223356899999998888777643 333 4899999854321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIY----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
+......|+.||++.+.+++.++.++ ++++++|+||.|++|..... ..+
T Consensus 153 -----~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~----------~~~------------ 205 (239)
T PRK08703 153 -----PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKS----------HPG------------ 205 (239)
T ss_pred -----CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCcccccc----------CCC------------
Confidence 11344679999999999999998775 59999999999999843210 001
Q ss_pred ccccccccHHHHHHHHHHHhhhcc
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
.....+...+|++.+++.++....
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~ 229 (239)
T PRK08703 206 EAKSERKSYGDVLPAFVWWASAES 229 (239)
T ss_pred CCccccCCHHHHHHHHHHHhCccc
Confidence 001124678999999999887543
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-19 Score=163.27 Aligned_cols=223 Identities=13% Similarity=0.043 Sum_probs=152.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc-hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY-YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
|++|||||+|+||+++++.|+++|++|+++.|.... ........ .....++.++.+|++|.+++.++++..
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQ---GALGFDFRVVEGDVSSFESCKAAVAKVEAELG 77 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH---HhhCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999883221 11111111 112346889999999999998887654
Q ss_pred CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLE----TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~----a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||..... ...++.+..+++|+.++..+++ .+++.+.+ +||++||.......
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~iss~~~~~~~------------ 144 (242)
T TIGR01829 78 PIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWG-RIINISSVNGQKGQ------------ 144 (242)
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEcchhhcCCC------------
Confidence 579999999975421 1223346688999999777544 44555554 89999996443211
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.....|+.+|.+.+.+++.++++. +++++.++||.+.++.... ....+...+....+.. .+..
T Consensus 145 ~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~--~~~~~~~~~~~~~~~~------------~~~~ 210 (242)
T TIGR01829 145 FGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMA--MREDVLNSIVAQIPVG------------RLGR 210 (242)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccc--cchHHHHHHHhcCCCC------------CCcC
Confidence 334679999999999998887653 8999999999999875421 1122333333322211 1445
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+|++.++..++..+... ..|+.+.+.++.
T Consensus 211 ~~~~a~~~~~l~~~~~~~----------~~G~~~~~~gg~ 240 (242)
T TIGR01829 211 PEEIAAAVAFLASEEAGY----------ITGATLSINGGL 240 (242)
T ss_pred HHHHHHHHHHHcCchhcC----------ccCCEEEecCCc
Confidence 689999988777554321 344788888764
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-19 Score=167.92 Aligned_cols=234 Identities=17% Similarity=0.119 Sum_probs=153.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----C
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----A 154 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----~ 154 (424)
+|+++|||| |+||+++++.|+ +|++|++++|+.+........... ...++.++.+|++|.+++.++++.. +
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~ 76 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLRE---AGFDVSTQEVDVSSRESVKALAATAQTLGP 76 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEeecCCHHHHHHHHHHHHhcCC
Confidence 467999998 799999999996 899999999975433322222111 1246889999999999999888753 5
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCC-----CCC---CCCCC---
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNK-----KVP---FSEKD--- 222 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~-----~~~---~~e~~--- 222 (424)
+|+||||||.... ..+++..+++|+.|+.++++++.... .+.++|++||.+...... ... ++..+
T Consensus 77 id~li~nAG~~~~---~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (275)
T PRK06940 77 VTGLVHTAGVSPS---QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLS 153 (275)
T ss_pred CCEEEECCCcCCc---hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccccc
Confidence 8999999997532 34578899999999999988876531 112567777754432110 000 00000
Q ss_pred -----C--CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC--CcHHHHHHHHHcCCceeEEec
Q 042406 223 -----R--TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD--MAYFFFTRDIIRGKRITVYEA 290 (424)
Q Consensus 223 -----~--~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 290 (424)
+ ...+...|++||++.+.+++.++.++ |+++++|+||.+.++..... .........+....+
T Consensus 154 ~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p------ 227 (275)
T PRK06940 154 LPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKSP------ 227 (275)
T ss_pred cccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhCC------
Confidence 0 00235789999999999999988764 79999999999987732110 000011112211111
Q ss_pred CCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 291 PDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 291 ~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..-+...+|+|++++.++...... ..|+++.+.+|.
T Consensus 228 ------~~r~~~peeia~~~~fL~s~~~~~----------itG~~i~vdgg~ 263 (275)
T PRK06940 228 ------AGRPGTPDEIAALAEFLMGPRGSF----------ITGSDFLVDGGA 263 (275)
T ss_pred ------cccCCCHHHHHHHHHHHcCcccCc----------ccCceEEEcCCe
Confidence 112677899999999888654322 334778777664
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-20 Score=170.77 Aligned_cols=227 Identities=12% Similarity=0.116 Sum_probs=153.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+++||||+|+||++++++|+++|++|++++|+.+..+. ... ....++.++.+|++|.+++.+++++.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~----l~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQE----LEA--AHGDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHh--hcCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999996543222 111 11246889999999999988887754
Q ss_pred --CccEEEEcccccCch--h---hc----cChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVR--Y---AM----QNPNSYVESNIAGFVNLLETCKSSD--PQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~--~---~~----~~~~~~~~~N~~g~~~ll~a~~~~~--~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||..... . .. ++.+..+++|+.++.++++++.+.. .+.++|++||...+..
T Consensus 77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~-------- 148 (262)
T TIGR03325 77 FGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYP-------- 148 (262)
T ss_pred hCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecC--------
Confidence 689999999974211 0 11 1245789999999999988876532 1236888887654321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCc-H-H----HH-HHHHHcCCceeEEecC
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDMA-Y-F----FF-TRDIIRGKRITVYEAP 291 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~-~-~----~~-~~~~~~~~~~~~~~~~ 291 (424)
......|+.+|.+.+.+++.++.++ ++++++|+||.+..+-...... . . .+ ....... .++
T Consensus 149 ----~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p----- 218 (262)
T TIGR03325 149 ----NGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKS-VLP----- 218 (262)
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhh-cCC-----
Confidence 1234679999999999999999875 4899999999998763221100 0 0 00 0111111 011
Q ss_pred CCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
..-+...+|+|.+++.++....... ..|+++.+.+|
T Consensus 219 -----~~r~~~p~eva~~~~~l~s~~~~~~---------~tG~~i~vdgg 254 (262)
T TIGR03325 219 -----IGRMPDAEEYTGAYVFFATRGDTVP---------ATGAVLNYDGG 254 (262)
T ss_pred -----CCCCCChHHhhhheeeeecCCCccc---------ccceEEEecCC
Confidence 1125678999999988776532110 23477877765
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-19 Score=162.78 Aligned_cols=205 Identities=14% Similarity=0.107 Sum_probs=145.2
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch-hhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----Cc
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY-ETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----AF 155 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~~ 155 (424)
|+||||+|+||.++++.|+++|++|++++|..+.. ......... ...++.++.+|++|.+++.++++.. ++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 77 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQA---QGGNARLLQFDVADRVACRTLLEADIAEHGAY 77 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH---cCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 58999999999999999999999999998754322 111111111 2346899999999999998887753 57
Q ss_pred cEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHH-----hcCCCCeEEEecCCcc-cCCCCCCCCCCCCCCC
Q 042406 156 THVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCK-----SSDPQPAIVWASSSSV-YGVNKKVPFSEKDRTD 225 (424)
Q Consensus 156 d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~-----~~~~~~~~v~~SS~~v-yg~~~~~~~~e~~~~~ 225 (424)
|++|||||..... ...++++..+++|+.++.++++++. +.+. ++||++||.+. ++.
T Consensus 78 ~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~iv~vsS~~~~~~~------------- 143 (239)
T TIGR01831 78 YGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQG-GRIITLASVSGVMGN------------- 143 (239)
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCC-eEEEEEcchhhccCC-------------
Confidence 9999999975432 1233456799999999999888652 2333 38999999654 332
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.....|+.+|++.+.+++.++.++ |++++.++||.+.++..... . .........-++ .-+..
T Consensus 144 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~-~~~~~~~~~~~~------------~~~~~ 208 (239)
T TIGR01831 144 RGQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEV--E-HDLDEALKTVPM------------NRMGQ 208 (239)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhh--h-HHHHHHHhcCCC------------CCCCC
Confidence 334689999999999999887664 89999999999988743311 1 111222221111 12456
Q ss_pred HHHHHHHHHHHhhhcc
Q 042406 303 IDDIVKGCLAGLDTAK 318 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~ 318 (424)
.+|++++++.++....
T Consensus 209 ~~~va~~~~~l~~~~~ 224 (239)
T TIGR01831 209 PAEVASLAGFLMSDGA 224 (239)
T ss_pred HHHHHHHHHHHcCchh
Confidence 7999999999987654
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-19 Score=164.25 Aligned_cols=229 Identities=13% Similarity=0.031 Sum_probs=156.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-Cc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-AF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~~ 155 (424)
+++|+++||||+|+||+++++.|+++|++|++++|+.+........... ....++.++.+|++|.+++.++++.. ++
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 82 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRA--AHGVDVAVHALDLSSPEAREQLAAEAGDI 82 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--hcCCceEEEEecCCCHHHHHHHHHHhCCC
Confidence 5789999999999999999999999999999999975433322221111 12346889999999999999988765 68
Q ss_pred cEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 042406 156 THVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227 (424)
Q Consensus 156 d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~ 227 (424)
|++|||||..... ...++.+..+++|+.+..++++++ ++.+.+ ++|++||..... +...
T Consensus 83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~iss~~~~~------------~~~~ 149 (259)
T PRK06125 83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSG-VIVNVIGAAGEN------------PDAD 149 (259)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc-EEEEecCccccC------------CCCC
Confidence 9999999975321 122334678999999988777765 333333 899998854421 1133
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC-------Cc-HHHHHHHHHcCCceeEEecCCCCcc
Q 042406 228 ASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD-------MA-YFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
...|+++|.+.+.+++.++.+. |++++.|+||.+..+....- .+ .......+... .+
T Consensus 150 ~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------- 217 (259)
T PRK06125 150 YICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAG--LP---------- 217 (259)
T ss_pred chHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhcc--CC----------
Confidence 4679999999999999987653 89999999999987621100 00 00000111110 00
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+..++|+|++++.++...... .+|..+.+.+|.
T Consensus 218 ~~~~~~~~~va~~~~~l~~~~~~~----------~~G~~i~vdgg~ 253 (259)
T PRK06125 218 LGRPATPEEVADLVAFLASPRSGY----------TSGTVVTVDGGI 253 (259)
T ss_pred cCCCcCHHHHHHHHHHHcCchhcc----------ccCceEEecCCe
Confidence 112668899999999887654322 344788887664
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=165.19 Aligned_cols=215 Identities=16% Similarity=0.137 Sum_probs=144.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+||||||+|+||++++++|+++|++|++++|+.+.......... ....++.++.+|++|.+++.+++.. ++|+|
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~-~id~v 77 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAA---RRGLALRVEKLDLTDAIDRAQAAEW-DVDVL 77 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcceEEEeeCCCHHHHHHHhcC-CCCEE
Confidence 4689999999999999999999999999999996433222111111 1234688999999999999988764 57999
Q ss_pred EEcccccCchhh----ccChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCCh
Q 042406 159 MHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLE----TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL 230 (424)
Q Consensus 159 i~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~----a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~ 230 (424)
|||||....... .++.+..+++|+.++.++.+ .+++.+.+ +||++||...+... .....
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~SS~~~~~~~------------~~~~~ 144 (257)
T PRK09291 78 LNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKG-KVVFTSSMAGLITG------------PFTGA 144 (257)
T ss_pred EECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEEcChhhccCC------------CCcch
Confidence 999997543221 22335678899998766554 44555654 99999996543211 23578
Q ss_pred HHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcC-Cc-eeEEecCCCCccccccccHHH
Q 042406 231 YAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRG-KR-ITVYEAPDGASVARDFTYIDD 305 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~i~v~D 305 (424)
|+.||.+.|.+++.+..+ .|+++++||||.+..+.... . ...+. ..... .. +.. .......+++..+|
T Consensus 145 Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~-~-~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~ 217 (257)
T PRK09291 145 YCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFNDT-M-AETPK-RWYDPARNFTDP----EDLAFPLEQFDPQE 217 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchhh-h-hhhhh-hhcchhhHHHhh----hhhhccccCCCHHH
Confidence 999999999999888765 48999999999875442210 0 00000 00000 00 110 01122334678999
Q ss_pred HHHHHHHHhhhc
Q 042406 306 IVKGCLAGLDTA 317 (424)
Q Consensus 306 va~a~~~~~~~~ 317 (424)
+++.++.++..+
T Consensus 218 ~~~~~~~~l~~~ 229 (257)
T PRK09291 218 MIDAMVEVIPAD 229 (257)
T ss_pred HHHHHHHHhcCC
Confidence 999988887654
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-19 Score=162.84 Aligned_cols=238 Identities=14% Similarity=0.107 Sum_probs=166.1
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+.++.+|+++||||+.+||++++++|++.|++|++.+|+.+..+..............++..+.||+++.+.++++++..
T Consensus 3 ~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~ 82 (270)
T KOG0725|consen 3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFA 82 (270)
T ss_pred CccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999887766655554444444567999999999988776665533
Q ss_pred ------CccEEEEcccccCch-----hhccChHHHHHHHHHH-HHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCC
Q 042406 154 ------AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAG-FVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVP 217 (424)
Q Consensus 154 ------~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g-~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~ 217 (424)
++|++|||||..... ...+.++..+++|+.| +.++..++. +.+. ..++++||...+....
T Consensus 83 ~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~g-g~I~~~ss~~~~~~~~--- 158 (270)
T KOG0725|consen 83 VEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKG-GSIVNISSVAGVGPGP--- 158 (270)
T ss_pred HHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCC-ceEEEEeccccccCCC---
Confidence 689999999986533 2344456799999996 555555443 3233 3888888876654311
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC---CcHHHHHHHHHcCCceeEEecC
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD---MAYFFFTRDIIRGKRITVYEAP 291 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
.+...|+.+|.+.+++.+.++.++ |+|+.+|.||.|..+..... .....+.+.......++
T Consensus 159 --------~~~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~p----- 225 (270)
T KOG0725|consen 159 --------GSGVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVP----- 225 (270)
T ss_pred --------CCcccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccccc-----
Confidence 111789999999999999998765 89999999999998751100 00111211110111111
Q ss_pred CCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
.-.+...+|++.++..++..... . ..|+.+.+.+|..
T Consensus 226 -----~gr~g~~~eva~~~~fla~~~as-y---------itG~~i~vdgG~~ 262 (270)
T KOG0725|consen 226 -----LGRVGTPEEVAEAAAFLASDDAS-Y---------ITGQTIIVDGGFT 262 (270)
T ss_pred -----cCCccCHHHHHHhHHhhcCcccc-c---------ccCCEEEEeCCEE
Confidence 11266789999999988777543 2 3346777766543
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-20 Score=167.75 Aligned_cols=227 Identities=22% Similarity=0.187 Sum_probs=157.4
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEEc
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHL 161 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~~ 161 (424)
|+|+||+|.+|+.+++.|++.+++|+++.|+.+. .....+...+++++.+|+.|.+++.++|+++ |.||++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~-------~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~--d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS-------DRAQQLQALGAEVVEADYDDPESLVAALKGV--DAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH-------HHHHHHHHTTTEEEES-TT-HHHHHHHHTTC--SEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch-------hhhhhhhcccceEeecccCCHHHHHHHHcCC--ceEEee
Confidence 7999999999999999999999999999997621 1122233457899999999999999999988 999998
Q ss_pred ccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 042406 162 AAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAI 241 (424)
Q Consensus 162 Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~ 241 (424)
.+.... .......+++++|++.+++ +||+.|....+.... ...|....-..|...|..
T Consensus 72 ~~~~~~------------~~~~~~~~li~Aa~~agVk-~~v~ss~~~~~~~~~---------~~~p~~~~~~~k~~ie~~ 129 (233)
T PF05368_consen 72 TPPSHP------------SELEQQKNLIDAAKAAGVK-HFVPSSFGADYDESS---------GSEPEIPHFDQKAEIEEY 129 (233)
T ss_dssp SSCSCC------------CHHHHHHHHHHHHHHHT-S-EEEESEESSGTTTTT---------TSTTHHHHHHHHHHHHHH
T ss_pred cCcchh------------hhhhhhhhHHHhhhccccc-eEEEEEecccccccc---------cccccchhhhhhhhhhhh
Confidence 875321 1234567899999999986 888655444432110 002223344577777776
Q ss_pred HHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHH--HHHcCC-ceeEEecCCCCccccccc-cHHHHHHHHHHHhhhc
Q 042406 242 AHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTR--DIIRGK-RITVYEAPDGASVARDFT-YIDDIVKGCLAGLDTA 317 (424)
Q Consensus 242 ~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~i-~v~Dva~a~~~~~~~~ 317 (424)
+++. ++++++||||..+..... .+.. ...... .+.++ ++++....++ +.+|+++++..++..+
T Consensus 130 l~~~----~i~~t~i~~g~f~e~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Dvg~~va~il~~p 196 (233)
T PF05368_consen 130 LRES----GIPYTIIRPGFFMENLLP------PFAPVVDIKKSKDVVTLP---GPGNQKAVPVTDTRDVGRAVAAILLDP 196 (233)
T ss_dssp HHHC----TSEBEEEEE-EEHHHHHT------TTHHTTCSCCTSSEEEEE---TTSTSEEEEEEHHHHHHHHHHHHHHSG
T ss_pred hhhc----cccceeccccchhhhhhh------hhcccccccccceEEEEc---cCCCccccccccHHHHHHHHHHHHcCh
Confidence 6554 999999999987753111 0111 011111 23333 4556555664 9999999999999987
Q ss_pred cccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccc
Q 042406 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAET 363 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~ 363 (424)
... ..++.+.+++ +.+|++|+++.+++.+|+++++
T Consensus 197 ~~~----------~~~~~~~~~~-~~~t~~eia~~~s~~~G~~v~y 231 (233)
T PF05368_consen 197 EKH----------NNGKTIFLAG-ETLTYNEIAAILSKVLGKKVKY 231 (233)
T ss_dssp GGT----------TEEEEEEEGG-GEEEHHHHHHHHHHHHTSEEEE
T ss_pred HHh----------cCCEEEEeCC-CCCCHHHHHHHHHHHHCCccEE
Confidence 653 1347888875 7799999999999999998765
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-19 Score=162.13 Aligned_cols=203 Identities=15% Similarity=0.132 Sum_probs=146.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--CccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--AFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--~~d~ 157 (424)
|+++||||+|+||+++++.|+++|++|++++|+.+...... .+ .++.++++|++|.++++++++.. ++|+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~----~~----~~~~~~~~D~~~~~~v~~~~~~~~~~id~ 72 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAA----KE----LDVDAIVCDNTDPASLEEARGLFPHHLDT 72 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----Hh----ccCcEEecCCCCHHHHHHHHHHHhhcCcE
Confidence 47999999999999999999999999999999654322111 11 14678899999999999988754 5799
Q ss_pred EEEcccccCc-------hh--hccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 042406 158 VMHLAAQAGV-------RY--AMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227 (424)
Q Consensus 158 vi~~Ag~~~~-------~~--~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~ 227 (424)
+|||||.... .. ..++.+..+++|+.++.++++++.... ...+||++||... ..
T Consensus 73 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~----------------~~ 136 (223)
T PRK05884 73 IVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP----------------PA 136 (223)
T ss_pred EEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC----------------CC
Confidence 9999985211 01 123446789999999998888875431 1248999998541 23
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHH
Q 042406 228 ASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYID 304 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 304 (424)
...|++||++.+.+++.++.++ |+++++|.||.+..+.. ... . . .+ .-..+
T Consensus 137 ~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~~----------~~~-~--~--------~p-----~~~~~ 190 (223)
T PRK05884 137 GSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPGY----------DGL-S--R--------TP-----PPVAA 190 (223)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchhh----------hhc-c--C--------CC-----CCCHH
Confidence 4679999999999999998764 89999999999875511 000 0 0 00 12679
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 305 Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
|++++++.++...... ..|+++.+.+|.
T Consensus 191 ~ia~~~~~l~s~~~~~----------v~G~~i~vdgg~ 218 (223)
T PRK05884 191 EIARLALFLTTPAARH----------ITGQTLHVSHGA 218 (223)
T ss_pred HHHHHHHHHcCchhhc----------cCCcEEEeCCCe
Confidence 9999999887654432 344777776654
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-19 Score=167.75 Aligned_cols=165 Identities=20% Similarity=0.217 Sum_probs=127.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+++||||+|+||++++++|+++|++|++++|+.+.... ....++.++.+|++|.+++.++++.+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~---------~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 71 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEA---------LAAAGFTAVQLDVNDGAALARLAEELEAEHG 71 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH---------HHHCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999996432111 11235788999999999998888765
Q ss_pred CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS---SDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~---~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.. .+. .++|++||...+... .
T Consensus 72 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~------------~ 138 (274)
T PRK05693 72 GLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSR-GLVVNIGSVSGVLVT------------P 138 (274)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CEEEEECCccccCCC------------C
Confidence 6899999999754322 2233457899999999888887643 222 379999986554321 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 042406 227 PASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPW 265 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~ 265 (424)
....|+.+|.+.+.+++.++.+ .|+++++++||.|.++.
T Consensus 139 ~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~ 180 (274)
T PRK05693 139 FAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQF 180 (274)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccc
Confidence 3478999999999999988765 48999999999998763
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=185.25 Aligned_cols=175 Identities=19% Similarity=0.176 Sum_probs=136.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
....+++++||||+|+||++++++|+++|++|++++|+.+..+......+. ...++.++.+|++|.+++.++++++
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~ 387 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRA---AGAVAHAYRVDVSDADAMEAFAEWVR 387 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999976443332222211 1346889999999999999988765
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++. +.+...+||++||.+.|...
T Consensus 388 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------- 459 (582)
T PRK05855 388 AEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPS-------- 459 (582)
T ss_pred HhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC--------
Confidence 5899999999864322 223345789999999988877653 33333489999998887632
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGP 264 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~ 264 (424)
.+...|++||++.+.+++.++.+. |+++++|+||.|-.+
T Consensus 460 ----~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 460 ----RSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 345789999999999999988664 899999999999765
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-19 Score=164.61 Aligned_cols=211 Identities=17% Similarity=0.117 Sum_probs=145.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
|+++||||+|+||.+++++|+++|++|++++|+.+..+........ .....+.++.+|++|.+++.++++++ +
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARA--LGGTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 5799999999999999999999999999999865433222222111 12233567899999999988887764 5
Q ss_pred ccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|+||||||...... ..++.+..+++|+.++.++++++.. .+...+||++||...+.. ..
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~------------~~ 146 (272)
T PRK07832 79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVA------------LP 146 (272)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCC------------CC
Confidence 799999999754321 2233467899999999999888643 222248999999654321 12
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCc-----HHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 227 PASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMA-----YFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
....|+.+|.+.+.+.+.++.+ .++++++|+||.+.++....... .......... ....
T Consensus 147 ~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 213 (272)
T PRK07832 147 WHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVD-------------RFRG 213 (272)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHH-------------hccc
Confidence 3467999999999988888754 48999999999999874321000 0000000000 0011
Q ss_pred ccccHHHHHHHHHHHhhhc
Q 042406 299 DFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~ 317 (424)
..+..+|+|++++.++++.
T Consensus 214 ~~~~~~~vA~~~~~~~~~~ 232 (272)
T PRK07832 214 HAVTPEKAAEKILAGVEKN 232 (272)
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 2578999999999999643
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.7e-19 Score=168.76 Aligned_cols=201 Identities=14% Similarity=0.150 Sum_probs=141.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC--HHHHHHHh---hc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND--KSLLDKIF---NV 152 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~v~~~~---~~ 152 (424)
.|++++||||+|+||++++++|+++|++|++++|+.+..+....+... ......+..+.+|+++ .+.++++. .+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~-~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQS-KYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH-HCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 478999999999999999999999999999999987654443332221 1122467888999985 34444433 33
Q ss_pred cCccEEEEcccccCc--hh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 153 VAFTHVMHLAAQAGV--RY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 153 ~~~d~vi~~Ag~~~~--~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
.++|++|||||.... .. ..++.+..+++|+.|+.++.+++. +.+.+ +||++||...+...
T Consensus 131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g-~IV~iSS~a~~~~~--------- 200 (320)
T PLN02780 131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKG-AIINIGSGAAIVIP--------- 200 (320)
T ss_pred CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCc-EEEEEechhhccCC---------
Confidence 456799999998532 11 122335689999999888777654 34443 89999997664210
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.......|++||++.+.+.+.++.++ |+++++++||.|-.+-... ... . .-
T Consensus 201 -~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~------------~~~-----------~--~~ 254 (320)
T PLN02780 201 -SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASI------------RRS-----------S--FL 254 (320)
T ss_pred -CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCcccc------------cCC-----------C--CC
Confidence 00235789999999999999998775 8999999999997662210 000 0 01
Q ss_pred cccHHHHHHHHHHHhh
Q 042406 300 FTYIDDIVKGCLAGLD 315 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~ 315 (424)
....+++|+.++..+.
T Consensus 255 ~~~p~~~A~~~~~~~~ 270 (320)
T PLN02780 255 VPSSDGYARAALRWVG 270 (320)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 3467999999998885
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-19 Score=163.49 Aligned_cols=206 Identities=14% Similarity=0.110 Sum_probs=147.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++++++||||+|+||.+++++|+++|++|++++|+.+......... ....++.++.+|++|.+++.++++..
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL----PYPGRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH----hcCCceEEEEccCCCHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999754332222111 12357899999999999988887654
Q ss_pred -CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.+ .+. +++|++||...+...
T Consensus 79 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~----------- 146 (263)
T PRK09072 79 GGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPS-AMVVNVGSTFGSIGY----------- 146 (263)
T ss_pred CCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CEEEEecChhhCcCC-----------
Confidence 5799999999754321 1223356889999999988887754 232 378888885443211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
.....|+.+|.+.+.+++.++.++ +++++++.||.+.++.... .. . . .. ........
T Consensus 147 -~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~----------~~-~-~--~~-----~~~~~~~~ 206 (263)
T PRK09072 147 -PGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSE----------AV-Q-A--LN-----RALGNAMD 206 (263)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhh----------hc-c-c--cc-----ccccCCCC
Confidence 234779999999999999988764 7999999999887653210 00 0 0 00 00011356
Q ss_pred cHHHHHHHHHHHhhhcc
Q 042406 302 YIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~ 318 (424)
.++|+|++++.++++..
T Consensus 207 ~~~~va~~i~~~~~~~~ 223 (263)
T PRK09072 207 DPEDVAAAVLQAIEKER 223 (263)
T ss_pred CHHHHHHHHHHHHhCCC
Confidence 78999999999998653
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=161.18 Aligned_cols=199 Identities=15% Similarity=0.151 Sum_probs=141.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
|+++||||+++||.+++++|+ +|++|++++|+.+..+......+. .....+.++++|++|.++++++++.. +
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 77 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQ--RGATSVHVLSFDAQDLDTHRELVKQTQELAGE 77 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHh--ccCCceEEEEcccCCHHHHHHHHHHHHHhcCC
Confidence 679999999999999999999 599999999976654443332221 12235789999999999998887654 6
Q ss_pred ccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHH----HHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLL----ETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll----~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|++|||||....... ..+....+.+|+.+...++ +.+.+.+...+||++||...+-. ..
T Consensus 78 id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~------------~~ 145 (246)
T PRK05599 78 ISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRA------------RR 145 (246)
T ss_pred CCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccC------------Cc
Confidence 8999999998543211 1122356778888876554 44444332248999999655421 12
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
....|+.+|++.+.+++.++.+. |++++++.||.|.++.... ..+.. -....
T Consensus 146 ~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~-------------~~~~~------------~~~~p 200 (246)
T PRK05599 146 ANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTG-------------MKPAP------------MSVYP 200 (246)
T ss_pred CCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcC-------------CCCCC------------CCCCH
Confidence 35689999999999999998764 7999999999998752110 00000 02467
Q ss_pred HHHHHHHHHHhhhcc
Q 042406 304 DDIVKGCLAGLDTAK 318 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~ 318 (424)
+|+|++++.++.+..
T Consensus 201 e~~a~~~~~~~~~~~ 215 (246)
T PRK05599 201 RDVAAAVVSAITSSK 215 (246)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999988754
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=150.56 Aligned_cols=224 Identities=13% Similarity=0.056 Sum_probs=164.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+..+.++||||+++||+++++.|+++|++|.+.+++....++... ......+-..+.||++++.+++..+++.
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~----~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~ 87 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAG----DLGGYGDHSAFSCDVSKAHDVQNTLEEMEKS 87 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHh----hcCCCCccceeeeccCcHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999997654333222 1122245678899999999998877765
Q ss_pred --CccEEEEcccccCc----hhhccChHHHHHHHHHHHHHHHHHHHhc----CCC-CeEEEecCC-cccCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGV----RYAMQNPNSYVESNIAGFVNLLETCKSS----DPQ-PAIVWASSS-SVYGVNKKVPFSEK 221 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~-~~~v~~SS~-~vyg~~~~~~~~e~ 221 (424)
.|++|+||||+... +...++.+..+.+|+.|++.+.+++.+. +.. -+||++||. +-.|.
T Consensus 88 ~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN--------- 158 (256)
T KOG1200|consen 88 LGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGN--------- 158 (256)
T ss_pred cCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccc---------
Confidence 69999999999653 3345567889999999998887776443 111 289999993 22232
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
..++.|+++|.-...+.+.++++. ++|+..|.||.|-.|-.. ...+.+++.+..+-|...+
T Consensus 159 ----~GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~--~mp~~v~~ki~~~iPmgr~---------- 222 (256)
T KOG1200|consen 159 ----FGQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTE--AMPPKVLDKILGMIPMGRL---------- 222 (256)
T ss_pred ----ccchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhh--hcCHHHHHHHHccCCcccc----------
Confidence 446889999988877777766653 899999999999887442 2345677788877766553
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
-..+|+|..++.+....... ..|..+.+.+|
T Consensus 223 --G~~EevA~~V~fLAS~~ssY----------iTG~t~evtGG 253 (256)
T KOG1200|consen 223 --GEAEEVANLVLFLASDASSY----------ITGTTLEVTGG 253 (256)
T ss_pred --CCHHHHHHHHHHHhcccccc----------ccceeEEEecc
Confidence 23689999988777443322 34477877765
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=165.60 Aligned_cols=209 Identities=16% Similarity=0.125 Sum_probs=141.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+++||||+|+||+.++++|+++|++|++++|+.... ...... ....+++++.+|++|.++++++++++
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~---~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKE---LTKLAE--QYNSNLTFHSLDLQDVHELETNFNEILSSIQ 75 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHH---HHHHHh--ccCCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 36899999999999999999999999999999965211 111111 12346889999999999998888754
Q ss_pred ----CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
.++++|||||.... ....++....+++|+.+...+++.+ ++.+..++||++||...+..
T Consensus 76 ~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~-------- 147 (251)
T PRK06924 76 EDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNP-------- 147 (251)
T ss_pred cccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCC--------
Confidence 12389999997533 1122334567888999866555544 44333348999999765431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCC-----CCcHHHHHHHHHcCCceeEEec
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHI-----YGLSITGLRFFTVYGPWGRP-----DMAYFFFTRDIIRGKRITVYEA 290 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~i~~~~vrp~~v~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 290 (424)
..+...|+.+|.+.+.+++.++.+ .+++++.|+||.+-.+.... .... .....+....+
T Consensus 148 ----~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~-~~~~~~~~~~~------ 216 (251)
T PRK06924 148 ----YFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDF-TNLDRFITLKE------ 216 (251)
T ss_pred ----CCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccc-hHHHHHHHHhh------
Confidence 145678999999999999998765 37999999999887652110 0000 00111111000
Q ss_pred CCCCccccccccHHHHHHHHHHHhhhc
Q 042406 291 PDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 291 ~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
..-+..++|+|++++.++...
T Consensus 217 ------~~~~~~~~dva~~~~~l~~~~ 237 (251)
T PRK06924 217 ------EGKLLSPEYVAKALRNLLETE 237 (251)
T ss_pred ------cCCcCCHHHHHHHHHHHHhcc
Confidence 012678999999999998863
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-18 Score=158.27 Aligned_cols=221 Identities=13% Similarity=0.067 Sum_probs=152.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+.+++|+||||+|+||.++++.|+++|++|++++|+.+......... ....+++++.+|++|.+++.+++++.
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTL----SKYGNIHYVVGDVSSTESARNVIEKAAKV 78 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH----HhcCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999654322211111 12236889999999999998887654
Q ss_pred --CccEEEEcccccCch--hhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVR--YAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPA 228 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~--~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~ 228 (424)
.+|.+||++|..... ...++.+..+++|+.+...+++.+.+.- ...+||++||...... +..+.
T Consensus 79 ~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~-----------~~~~~ 147 (238)
T PRK05786 79 LNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYK-----------ASPDQ 147 (238)
T ss_pred hCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhccc-----------CCCCc
Confidence 369999999864321 1113345678999999887777765431 1237999998654211 11345
Q ss_pred ChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHH
Q 042406 229 SLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDD 305 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 305 (424)
..|+.+|.+.+.+++.+..+. +++++++|||+++++..... .... ... . ...++..+|
T Consensus 148 ~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~~-----~~~~------~~~-----~---~~~~~~~~~ 208 (238)
T PRK05786 148 LSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPER-----NWKK------LRK-----L---GDDMAPPED 208 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCchh-----hhhh------hcc-----c---cCCCCCHHH
Confidence 679999999999999988764 89999999999998742210 0000 000 0 112567899
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 306 IVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 306 va~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
++++++.++...... ..|+.+.+.++
T Consensus 209 va~~~~~~~~~~~~~----------~~g~~~~~~~~ 234 (238)
T PRK05786 209 FAKVIIWLLTDEADW----------VDGVVIPVDGG 234 (238)
T ss_pred HHHHHHHHhcccccC----------ccCCEEEECCc
Confidence 999999998754321 22367776554
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=166.57 Aligned_cols=223 Identities=13% Similarity=0.070 Sum_probs=146.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
+|+++||||+++||.++++.|+++| ++|++++|+.+...+...... .....+.++.+|++|.++++++++..
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 79 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLG---MPKDSYTIMHLDLGSLDSVRQFVQQFRESG 79 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc---CCCCeEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 6789999999999999999999999 999999997654333222111 12346788999999999998887653
Q ss_pred -CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHH----HhcCC-CCeEEEecCCcccCCCC----CCCC
Q 042406 154 -AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETC----KSSDP-QPAIVWASSSSVYGVNK----KVPF 218 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~-~~~~v~~SS~~vyg~~~----~~~~ 218 (424)
++|++|||||+.... ...++.+..+++|+.|+..+++++ ++.+. ..+||++||...+.... ..+.
T Consensus 80 ~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~ 159 (314)
T TIGR01289 80 RPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKA 159 (314)
T ss_pred CCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcc
Confidence 589999999975321 122334678999999987775554 44321 24899999987653210 0000
Q ss_pred ------------------CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEEecccc-CCCCCCCCc-HHH
Q 042406 219 ------------------SEKDRTDQPASLYAATKKAGEAIAHAYNHIY----GLSITGLRFFTVY-GPWGRPDMA-YFF 274 (424)
Q Consensus 219 ------------------~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~i~~~~vrp~~v~-G~~~~~~~~-~~~ 274 (424)
.+. ....+...|+.||++...++++++++. |+++++|+||.|. .+-...... ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~~~ 238 (314)
T TIGR01289 160 NLGDLSGLAAGFKAPIAMIDG-KEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRT 238 (314)
T ss_pred cccccccccccCCCcccccCC-CCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHHHH
Confidence 011 122456789999999999888887653 7999999999985 332221110 101
Q ss_pred HHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 275 FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
+...+.. ... ..+..+++.|+.++.++....
T Consensus 239 ~~~~~~~---~~~----------~~~~~~~~~a~~l~~~~~~~~ 269 (314)
T TIGR01289 239 LFPPFQK---YIT----------KGYVSEEEAGERLAQVVSDPK 269 (314)
T ss_pred HHHHHHH---HHh----------ccccchhhhhhhhHHhhcCcc
Confidence 1111100 000 114678899999998877654
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=158.90 Aligned_cols=206 Identities=17% Similarity=0.161 Sum_probs=144.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCC--CHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN--DKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d~~~v~~~~~~~ 153 (424)
..++|+|+||||+|+||.+++++|+++|++|++++|+.+.......... .....++.++.+|++ +.+++.++++.+
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIE--AAGGPQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH--hcCCCCceEEEecccCCCHHHHHHHHHHH
Confidence 4688999999999999999999999999999999997643332222111 112345677788886 666666655543
Q ss_pred -----CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++. +.+.. +||++||.......
T Consensus 87 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~-~iv~~ss~~~~~~~------ 159 (247)
T PRK08945 87 EEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAA-SLVFTSSSVGRQGR------ 159 (247)
T ss_pred HHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC-EEEEEccHhhcCCC------
Confidence 579999999975331 1123346789999999888877664 44443 89999996543211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.....|+.||++.+.+++.++.++ ++++++++||.+-++-... ..... ..
T Consensus 160 ------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~----------~~~~~---------~~-- 212 (247)
T PRK08945 160 ------ANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRAS----------AFPGE---------DP-- 212 (247)
T ss_pred ------CCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhh----------hcCcc---------cc--
Confidence 334679999999999999988765 7999999999887652110 00000 00
Q ss_pred ccccccHHHHHHHHHHHhhhcc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
..+...+|++.+++.++....
T Consensus 213 -~~~~~~~~~~~~~~~~~~~~~ 233 (247)
T PRK08945 213 -QKLKTPEDIMPLYLYLMGDDS 233 (247)
T ss_pred -cCCCCHHHHHHHHHHHhCccc
Confidence 125678999999999876543
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-18 Score=161.78 Aligned_cols=232 Identities=11% Similarity=0.005 Sum_probs=150.9
Q ss_pred CCCCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhh------hc----cCCeEEEEccC--
Q 042406 75 RSTRGLTVLVTGA--AGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL------LE----RAGVFVIDADI-- 140 (424)
Q Consensus 75 ~~~~~~~vlItGg--~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~------~~----~~~v~~~~~Dl-- 140 (424)
..++||++||||| +++||.++++.|+++|++|++ .|..+.++......+... .. .....++.+|+
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF 83 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence 4588999999999 899999999999999999988 666555444332222110 01 11246788898
Q ss_pred CCH------------------HHHHHHhhcc-----CccEEEEcccccCc------hhhccChHHHHHHHHHHHHHHHHH
Q 042406 141 NDK------------------SLLDKIFNVV-----AFTHVMHLAAQAGV------RYAMQNPNSYVESNIAGFVNLLET 191 (424)
Q Consensus 141 ~d~------------------~~v~~~~~~~-----~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~ll~a 191 (424)
++. ++++++++.+ ++|+||||||.... ....++.+..+++|+.++..++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~ 163 (303)
T PLN02730 84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH 163 (303)
T ss_pred CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 333 3677766654 58999999975321 122344567999999998888776
Q ss_pred HHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCC
Q 042406 192 CKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTDQPA-SLYAATKKAGEAIAHAYNHIY----GLSITGLRFFTVYGPW 265 (424)
Q Consensus 192 ~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~~----~i~~~~vrp~~v~G~~ 265 (424)
+..... ..+||++||....... ... ..|+.||++.+.+.+.++.++ |+++++|.||.|-.+-
T Consensus 164 ~~p~m~~~G~II~isS~a~~~~~------------p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~~ 231 (303)
T PLN02730 164 FGPIMNPGGASISLTYIASERII------------PGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSRA 231 (303)
T ss_pred HHHHHhcCCEEEEEechhhcCCC------------CCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCch
Confidence 654311 1389999996543210 112 479999999999999998763 6999999999998763
Q ss_pred CCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 266 GRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
...-............. .++ .-+...+|++.+++.++...... ..|+++.+.++
T Consensus 232 ~~~~~~~~~~~~~~~~~--~pl----------~r~~~peevA~~~~fLaS~~a~~----------itG~~l~vdGG 285 (303)
T PLN02730 232 AKAIGFIDDMIEYSYAN--APL----------QKELTADEVGNAAAFLASPLASA----------ITGATIYVDNG 285 (303)
T ss_pred hhcccccHHHHHHHHhc--CCC----------CCCcCHHHHHHHHHHHhCccccC----------ccCCEEEECCC
Confidence 32100001111111111 111 12467899999999988754432 33467776654
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=154.74 Aligned_cols=182 Identities=18% Similarity=0.172 Sum_probs=137.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-CccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-AFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~~d~v 158 (424)
|+++||||+|+||+++++.|+++ ++|++++|+.. .+++|++|.++++++++.. ++|+|
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~id~l 59 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG--------------------DVQVDITDPASIRALFEKVGKVDAV 59 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC--------------------ceEecCCChHHHHHHHHhcCCCCEE
Confidence 57999999999999999999999 99999998431 4689999999999999876 68999
Q ss_pred EEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 042406 159 MHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAA 233 (424)
Q Consensus 159 i~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~ 233 (424)
|||||...... ..++.+..+++|+.++.++++++.... ...+|+++||...... ......|+.
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~------------~~~~~~Y~~ 127 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEP------------IPGGASAAT 127 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCC------------CCCchHHHH
Confidence 99999754321 222345688999999999998876531 1237999988654321 134578999
Q ss_pred HHHHHHHHHHHHHHH--hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHH
Q 042406 234 TKKAGEAIAHAYNHI--YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311 (424)
Q Consensus 234 sK~~~e~~~~~~~~~--~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 311 (424)
+|.+.+.+++.++.+ .|++++.|+||.+-.+... . +. .++ + ..++..+|+|++++
T Consensus 128 sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~~-----------~--~~---~~~--~-----~~~~~~~~~a~~~~ 184 (199)
T PRK07578 128 VNGALEGFVKAAALELPRGIRINVVSPTVLTESLEK-----------Y--GP---FFP--G-----FEPVPAARVALAYV 184 (199)
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchhh-----------h--hh---cCC--C-----CCCCCHHHHHHHHH
Confidence 999999999998876 4899999999988544110 0 00 010 1 13678999999999
Q ss_pred HHhhhc
Q 042406 312 AGLDTA 317 (424)
Q Consensus 312 ~~~~~~ 317 (424)
.+++..
T Consensus 185 ~~~~~~ 190 (199)
T PRK07578 185 RSVEGA 190 (199)
T ss_pred HHhccc
Confidence 888753
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=182.46 Aligned_cols=203 Identities=17% Similarity=0.184 Sum_probs=151.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+....... ...++.++.+|++|.++++++++++
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 444 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRA---KGGTAHAYTCDLTDSAAVDHTVKDILA 444 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999976543332222211 1346889999999999999888754
Q ss_pred ---CccEEEEcccccCchh---h---ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY---A---MQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~---~---~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||...... . .++.+..+++|+.|+.++++++ ++.+.+ +||++||.+.+...
T Consensus 445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~------- 516 (657)
T PRK07201 445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFG-HVVNVSSIGVQTNA------- 516 (657)
T ss_pred hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-EEEEECChhhcCCC-------
Confidence 5799999999743211 1 1235678999999988776654 444444 89999998887531
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.....|+.||++.+.+++.++.++ |+++++|+||.|.++...+.. .+ . .
T Consensus 517 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~----------------~~---~----~ 568 (657)
T PRK07201 517 -----PRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTK----------------RY---N----N 568 (657)
T ss_pred -----CCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCccc----------------cc---c----C
Confidence 335789999999999999988664 899999999999887432110 00 0 0
Q ss_pred cccccHHHHHHHHHHHhhhc
Q 042406 298 RDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~ 317 (424)
...+..+++|+.++..+...
T Consensus 569 ~~~~~~~~~a~~i~~~~~~~ 588 (657)
T PRK07201 569 VPTISPEEAADMVVRAIVEK 588 (657)
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 12567899999999887653
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.1e-18 Score=162.24 Aligned_cols=179 Identities=11% Similarity=0.087 Sum_probs=127.0
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch------hhhHHHHHhhh-hccCCeEEEEccCCCHHHHH
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY------ETSLKKARKGL-LERAGVFVIDADINDKSLLD 147 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~------~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~ 147 (424)
.++++|+++||||+++||.+++++|+++|++|++++|+.... .+......... .....+.++++|++|.++++
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~ 83 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVR 83 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHH
Confidence 356889999999999999999999999999999999974321 01111111111 11235778999999999999
Q ss_pred HHhhcc-----CccEEEEcc-cccC-----chhh---ccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcc
Q 042406 148 KIFNVV-----AFTHVMHLA-AQAG-----VRYA---MQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSV 209 (424)
Q Consensus 148 ~~~~~~-----~~d~vi~~A-g~~~-----~~~~---~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~v 209 (424)
++++.+ ++|++|||| |... .... .++....+++|+.++..+++++.. .+. .+||++||...
T Consensus 84 ~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~-g~IV~isS~~~ 162 (305)
T PRK08303 84 ALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPG-GLVVEITDGTA 162 (305)
T ss_pred HHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCC-cEEEEECCccc
Confidence 888764 689999999 7421 1111 122346788999998777665543 322 38999998543
Q ss_pred -cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 042406 210 -YGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGP 264 (424)
Q Consensus 210 -yg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~ 264 (424)
++.. .......|++||++.+.+++.++.++ |+++++|.||.|-.+
T Consensus 163 ~~~~~----------~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 163 EYNAT----------HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSE 211 (305)
T ss_pred cccCc----------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccH
Confidence 2210 01224579999999999999998775 799999999988665
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-19 Score=154.77 Aligned_cols=226 Identities=17% Similarity=0.154 Sum_probs=156.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
..+||++++|||.|+||+++.++|+++|..+.+++.+.+..+. ............+.|+++|+++..+++++|+++
T Consensus 2 ~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a--~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~ 79 (261)
T KOG4169|consen 2 DLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEA--IAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILA 79 (261)
T ss_pred cccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHH--HHHHhccCCCceEEEEEeccccHHHHHHHHHHHHH
Confidence 4679999999999999999999999999988777665543222 222334456778999999999999999999887
Q ss_pred ---CccEEEEcccccCchhhccChHHHHHHHHHH----HHHHHHHHHhc--CCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYAMQNPNSYVESNIAG----FVNLLETCKSS--DPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g----~~~ll~a~~~~--~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
.+|++||+||+.. +.+.+.++.+|+.| |...++.+.+. |.+..+|++||......
T Consensus 80 ~fg~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P------------ 143 (261)
T KOG4169|consen 80 TFGTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDP------------ 143 (261)
T ss_pred HhCceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCc------------
Confidence 6899999999965 56789999999987 45566666554 34558999999544321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHc-CCceeEEecCCCCcccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIR-GKRITVYEAPDGASVAR 298 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~-----~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 298 (424)
-.-...|++||+..-.+.++++.. .|+++..+|||.+-.. +...+.. +..+..-+.--+.-.+.
T Consensus 144 ~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~----------l~~~~~~~~~~~e~~~~~~~~l~~~ 213 (261)
T KOG4169|consen 144 MPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTD----------LAENIDASGGYLEYSDSIKEALERA 213 (261)
T ss_pred cccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHH----------HHHHHHhcCCcccccHHHHHHHHHc
Confidence 134578999999999999997643 3999999999976431 2222211 11110000000000001
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.--...+|+..++.+++.+.. |.+|-+..+.
T Consensus 214 ~~q~~~~~a~~~v~aiE~~~N-------------Gaiw~v~~g~ 244 (261)
T KOG4169|consen 214 PKQSPACCAINIVNAIEYPKN-------------GAIWKVDSGS 244 (261)
T ss_pred ccCCHHHHHHHHHHHHhhccC-------------CcEEEEecCc
Confidence 123457888999999988542 3678777654
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-19 Score=163.37 Aligned_cols=165 Identities=19% Similarity=0.106 Sum_probs=125.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc------
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV------ 152 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~------ 152 (424)
+|+++||||+|+||++++++|+++|++|++++|+.+.. .. .....++.++++|++|.+++++++++
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~------~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 72 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS------LA--AAAGERLAEVELDLSDAAAAAAWLAGDLLAAF 72 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh------hh--hccCCeEEEEEeccCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999965421 11 11234688999999999999886544
Q ss_pred ---cCccEEEEcccccCch--h---hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 153 ---VAFTHVMHLAAQAGVR--Y---AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 153 ---~~~d~vi~~Ag~~~~~--~---~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
.++|++|||||..... . ..++.+..+++|+.++..+.+.+. +.+. ++||++||...+..
T Consensus 73 ~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~-------- 143 (243)
T PRK07023 73 VDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAE-RRILHISSGAARNA-------- 143 (243)
T ss_pred ccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCC-CEEEEEeChhhcCC--------
Confidence 1579999999975431 1 122345788999999776655554 3333 38999999876642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH--hCCcEEEEEeccccCC
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHI--YGLSITGLRFFTVYGP 264 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~~i~~~~vrp~~v~G~ 264 (424)
..+...|+.+|.+.|.+++.++.+ .++++++|+||.+-++
T Consensus 144 ----~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 144 ----YAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 145678999999999999998865 4899999999998665
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=174.56 Aligned_cols=171 Identities=18% Similarity=0.173 Sum_probs=131.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
.++|+++||||+++||.++++.|+++|++|++++|+.+........ . ..++.++.+|++|+++++++++.+
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-----~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADS-----L-GPDHHALAMDVSDEAQIREGFEQLHRE 76 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-----h-CCceeEEEeccCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999975443322111 1 246778999999999999888764
Q ss_pred --CccEEEEcccccCc------hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGV------RYAMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||.... ....++.+..+++|+.++.++++++... +.+.+||++||.......
T Consensus 77 ~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~-------- 148 (520)
T PRK06484 77 FGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVAL-------- 148 (520)
T ss_pred hCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCC--------
Confidence 58999999997321 1223344679999999998888776543 322389999996654321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPW 265 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~ 265 (424)
.....|+++|++.+.+++.++.++ ++++++|+||.|..+.
T Consensus 149 ----~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~ 191 (520)
T PRK06484 149 ----PKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQM 191 (520)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchh
Confidence 234789999999999999998764 8999999999987663
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=159.71 Aligned_cols=211 Identities=14% Similarity=0.065 Sum_probs=143.2
Q ss_pred eEEEEcCCChhHHHHHHHHHh----CCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 81 TVLVTGAAGFVGSHVSLALKK----RGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
.++||||+++||.+++++|++ .|++|++++|+.+..+......... .....+.++.+|++|.++++++++.+
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~-~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAE-RSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhc-CCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 589999999999999999997 7999999999765444333222211 12346889999999999998887654
Q ss_pred ------CccEEEEcccccCch--hh-----ccChHHHHHHHHHHHHHHHHHHHh----c-CCCCeEEEecCCcccCCCCC
Q 042406 154 ------AFTHVMHLAAQAGVR--YA-----MQNPNSYVESNIAGFVNLLETCKS----S-DPQPAIVWASSSSVYGVNKK 215 (424)
Q Consensus 154 ------~~d~vi~~Ag~~~~~--~~-----~~~~~~~~~~N~~g~~~ll~a~~~----~-~~~~~~v~~SS~~vyg~~~~ 215 (424)
..|+||||||..... .. .++.+..+++|+.++..+.+++.+ . +..++||++||.+.+..
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~--- 157 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQP--- 157 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCC---
Confidence 136999999974321 11 123357899999998777665533 2 22248999999765431
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC---CCcHHHHHHHHHcCCceeEEe
Q 042406 216 VPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP---DMAYFFFTRDIIRGKRITVYE 289 (424)
Q Consensus 216 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~ 289 (424)
......|+.||.+.+.+++.++.++ |+++++++||.|-.+.... ...-+.....+....+
T Consensus 158 ---------~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~----- 223 (256)
T TIGR01500 158 ---------FKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQELKA----- 223 (256)
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHHHh-----
Confidence 1345789999999999999998764 7999999999997652110 0000000111111100
Q ss_pred cCCCCccccccccHHHHHHHHHHHhhh
Q 042406 290 APDGASVARDFTYIDDIVKGCLAGLDT 316 (424)
Q Consensus 290 ~~~~~~~~~~~i~v~Dva~a~~~~~~~ 316 (424)
..-+...+|+|.+++.++++
T Consensus 224 -------~~~~~~p~eva~~~~~l~~~ 243 (256)
T TIGR01500 224 -------KGKLVDPKVSAQKLLSLLEK 243 (256)
T ss_pred -------cCCCCCHHHHHHHHHHHHhc
Confidence 01267789999999999864
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-18 Score=154.60 Aligned_cols=171 Identities=10% Similarity=0.108 Sum_probs=126.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+++||++++++|+++|++|++++|+.+..++....... ...++..+.+|++|.++++++++.+
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSA---LTDNVYSFQLKDFSQESIRHLFDAIEQ 78 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCCeEEEEccCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999976654443322221 1345788999999999998877643
Q ss_pred ----CccEEEEcccccCch-hh-c---cChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR-YA-M---QNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~-~~-~---~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|++|||||..... .. + ++....+++|+.++..+++. +++.+....||++||...+
T Consensus 79 ~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~---------- 148 (227)
T PRK08862 79 QFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH---------- 148 (227)
T ss_pred HhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC----------
Confidence 589999999853321 11 1 12234677788876665443 4443323489999985432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGP 264 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~ 264 (424)
.+...|+.+|++.+.+.+.++.++ |+++..|+||.+-.+
T Consensus 149 -----~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 -----QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 224679999999999999998764 899999999998876
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=155.13 Aligned_cols=192 Identities=18% Similarity=0.108 Sum_probs=141.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---Cc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---AF 155 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---~~ 155 (424)
+|+++||||+|+||++++++|+++|++|++++|+.+..+. . ...+++++.+|++|.+.++++++.. ++
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~----~-----~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 71 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAA----L-----QALGAEALALDVADPASVAGLAWKLDGEAL 71 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHH----H-----HhccceEEEecCCCHHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999996432211 1 1124678999999999998876544 58
Q ss_pred cEEEEcccccCch------hhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCC-cccCCCCCCCCCCCCCCCC
Q 042406 156 THVMHLAAQAGVR------YAMQNPNSYVESNIAGFVNLLETCKSSD--PQPAIVWASSS-SVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 156 d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~ll~a~~~~~--~~~~~v~~SS~-~vyg~~~~~~~~e~~~~~~ 226 (424)
|+|||++|..... ...++.+..+++|+.++.++++++...- ...++|++||. +.++... ..
T Consensus 72 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~----------~~ 141 (222)
T PRK06953 72 DAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDAT----------GT 141 (222)
T ss_pred CEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCccccccccc----------CC
Confidence 9999999986321 1233457799999999999998886521 12378888885 4454211 01
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHH
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY-GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDD 305 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~-~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 305 (424)
+...|+.+|.+.+.+++.++.++ +++++.++||.+..+.... ...+..+|
T Consensus 142 ~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~~-----------------------------~~~~~~~~ 192 (222)
T PRK06953 142 TGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGGA-----------------------------QAALDPAQ 192 (222)
T ss_pred CccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCCC-----------------------------CCCCCHHH
Confidence 22469999999999999988765 8999999999998763210 01345688
Q ss_pred HHHHHHHHhhhcc
Q 042406 306 IVKGCLAGLDTAK 318 (424)
Q Consensus 306 va~a~~~~~~~~~ 318 (424)
.+..+..++....
T Consensus 193 ~~~~~~~~~~~~~ 205 (222)
T PRK06953 193 SVAGMRRVIAQAT 205 (222)
T ss_pred HHHHHHHHHHhcC
Confidence 8888888776553
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-17 Score=168.65 Aligned_cols=226 Identities=20% Similarity=0.149 Sum_probs=154.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
...++++++||||+|+||..+++.|+++|++|++++|.... +....... .-+..++.+|++|.++++++++..
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~--~~l~~~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~ 279 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAG--EALAAVAN----RVGGTALALDITAPDAPARIAEHLA 279 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccH--HHHHHHHH----HcCCeEEEEeCCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999884321 11111111 123468899999999998888754
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCC---CCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDP---QPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~---~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++.+++..... ..+||++||.+.+...
T Consensus 280 ~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~--------- 350 (450)
T PRK08261 280 ERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGN--------- 350 (450)
T ss_pred HhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC---------
Confidence 5799999999754321 2233467899999999999998876322 2389999997654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.....|+.+|.+.+.+++.++.+ .|+++++|+||.+-.+.... ++.......... ..+ ..
T Consensus 351 ---~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~---~~~~~~~~~~~~-~~l----------~~ 413 (450)
T PRK08261 351 ---RGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAA---IPFATREAGRRM-NSL----------QQ 413 (450)
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhc---cchhHHHHHhhc-CCc----------CC
Confidence 34578999999999999888765 38999999999986542211 111111111110 011 11
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
....+|++++++.++...... ..|+++.++++.
T Consensus 414 ~~~p~dva~~~~~l~s~~~~~----------itG~~i~v~g~~ 446 (450)
T PRK08261 414 GGLPVDVAETIAWLASPASGG----------VTGNVVRVCGQS 446 (450)
T ss_pred CCCHHHHHHHHHHHhChhhcC----------CCCCEEEECCCc
Confidence 234679999999887643321 445888887754
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=158.60 Aligned_cols=220 Identities=15% Similarity=0.086 Sum_probs=140.8
Q ss_pred EEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----Ccc
Q 042406 83 LVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----AFT 156 (424)
Q Consensus 83 lItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~~d 156 (424)
+||||+++||.+++++|+++| ++|++.+|+.+.......... .....+.++.+|++|.++++++++.+ ++|
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD 77 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAG---MPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLD 77 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhc---CCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCC
Confidence 699999999999999999999 999999996543332222111 11346888999999999998887754 589
Q ss_pred EEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHH----HHhcCC-CCeEEEecCCcccCCC-----CC----CC
Q 042406 157 HVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLET----CKSSDP-QPAIVWASSSSVYGVN-----KK----VP 217 (424)
Q Consensus 157 ~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a----~~~~~~-~~~~v~~SS~~vyg~~-----~~----~~ 217 (424)
+||||||+.... ...++.+..+++|+.|+..++++ +++.+. ..+||++||...+-.. .. ..
T Consensus 78 ~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~ 157 (308)
T PLN00015 78 VLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 157 (308)
T ss_pred EEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhh
Confidence 999999975321 12233467999999997776554 444331 2489999997654110 00 00
Q ss_pred -------CCC-------CCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccC-CCCCCCCcHHHHHHH
Q 042406 218 -------FSE-------KDRTDQPASLYAATKKAGEAIAHAYNHIY----GLSITGLRFFTVYG-PWGRPDMAYFFFTRD 278 (424)
Q Consensus 218 -------~~e-------~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~i~~~~vrp~~v~G-~~~~~~~~~~~~~~~ 278 (424)
..+ +.....+...|+.||++.+.+++.+++++ |+++++|+||.|.. +-..... .. ...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~--~~-~~~ 234 (308)
T PLN00015 158 LRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHI--PL-FRL 234 (308)
T ss_pred hhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCcccccccc--HH-HHH
Confidence 000 00111345779999999888878887653 79999999999953 3221111 01 110
Q ss_pred HHc-CCceeEEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 279 IIR-GKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 279 ~~~-~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
+.. ...... ..+...++.|+.++.++....
T Consensus 235 ~~~~~~~~~~----------~~~~~pe~~a~~~~~l~~~~~ 265 (308)
T PLN00015 235 LFPPFQKYIT----------KGYVSEEEAGKRLAQVVSDPS 265 (308)
T ss_pred HHHHHHHHHh----------cccccHHHhhhhhhhhccccc
Confidence 000 000000 014678999999988776544
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-18 Score=154.06 Aligned_cols=170 Identities=19% Similarity=0.149 Sum_probs=126.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---Cc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---AF 155 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---~~ 155 (424)
+|+|+||||+|+||++++++|+++|++|++++|+.+..... . ...++.++.+|++|.++++++++.. ++
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~----~----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~i 72 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTAL----Q----ALPGVHIEKLDMNDPASLDQLLQRLQGQRF 72 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHH----H----hccccceEEcCCCCHHHHHHHHHHhhcCCC
Confidence 36899999999999999999999999999999976542211 1 1236788899999999998888754 68
Q ss_pred cEEEEcccccCch------hhccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 042406 156 THVMHLAAQAGVR------YAMQNPNSYVESNIAGFVNLLETCKSSD--PQPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227 (424)
Q Consensus 156 d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~ll~a~~~~~--~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~ 227 (424)
|+||||||..... ....+.+..+.+|+.++..+++++.... ...+++++||.. |.... ++..+
T Consensus 73 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~--g~~~~-------~~~~~ 143 (225)
T PRK08177 73 DLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQL--GSVEL-------PDGGE 143 (225)
T ss_pred CEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCc--ccccc-------CCCCC
Confidence 9999999985321 1122334678899999988888775432 113788888743 32110 01133
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC
Q 042406 228 ASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPW 265 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~ 265 (424)
...|+.+|.+.+.+++.+++++ ++++++|+||.+-.+.
T Consensus 144 ~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~ 184 (225)
T PRK08177 144 MPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM 184 (225)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence 4579999999999999998764 7999999999997763
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=151.89 Aligned_cols=190 Identities=18% Similarity=0.117 Sum_probs=130.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+++|+++||||+|+||++++++|+++|++|++++|+..... . .. .. ....++.+|++|.+++.+.+.. +
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~---~-~~---~~-~~~~~~~~D~~~~~~~~~~~~~--i 80 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNS---E-SN---DE-SPNEWIKWECGKEESLDKQLAS--L 80 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhh---h-hh---cc-CCCeEEEeeCCCHHHHHHhcCC--C
Confidence 457899999999999999999999999999999998652111 0 00 11 1236789999999999988875 5
Q ss_pred cEEEEcccccCc-hhhccChHHHHHHHHHHHHHHHHHHHhcC------CCCeEEEecCCcccCCCCCCCCCCCCCCCCCC
Q 042406 156 THVMHLAAQAGV-RYAMQNPNSYVESNIAGFVNLLETCKSSD------PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPA 228 (424)
Q Consensus 156 d~vi~~Ag~~~~-~~~~~~~~~~~~~N~~g~~~ll~a~~~~~------~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~ 228 (424)
|++|||||.... ....++.+..+++|+.|+.++++++.... .++.++..||.+.+.. ...
T Consensus 81 DilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~-------------~~~ 147 (245)
T PRK12367 81 DVLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQP-------------ALS 147 (245)
T ss_pred CEEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccCC-------------CCC
Confidence 999999997432 22234557899999999999888765421 1223444455433221 123
Q ss_pred ChHHHHHHHHHHHH---HHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 229 SLYAATKKAGEAIA---HAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~---~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
..|++||++.+.+. +++..+ .++.++.+.||.+..+-. + ...+.
T Consensus 148 ~~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~-----------------~-------------~~~~~ 197 (245)
T PRK12367 148 PSYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSELN-----------------P-------------IGIMS 197 (245)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccccC-----------------c-------------cCCCC
Confidence 56999999986543 333222 378888888876543210 0 01466
Q ss_pred HHHHHHHHHHHhhhcc
Q 042406 303 IDDIVKGCLAGLDTAK 318 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~ 318 (424)
.+|+|+.++.++.+..
T Consensus 198 ~~~vA~~i~~~~~~~~ 213 (245)
T PRK12367 198 ADFVAKQILDQANLGL 213 (245)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 8999999999987654
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=162.09 Aligned_cols=265 Identities=19% Similarity=0.173 Sum_probs=181.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC---CeEEEEeCCCCchhhh--HHHHHhh-----h-----hccCCeEEEEccCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRG---DGVLGLDNFNNYYETS--LKKARKG-----L-----LERAGVFVIDADIN 141 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~--~~~~~~~-----~-----~~~~~v~~~~~Dl~ 141 (424)
..+|+|+|||||||+|+.++++|++.- -+++++-|.+...... ......+ . ....++..+.+|++
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 468999999999999999999999974 2788999977543221 1111110 0 12367889999998
Q ss_pred CH------HHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC---C
Q 042406 142 DK------SLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG---V 212 (424)
Q Consensus 142 d~------~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg---~ 212 (424)
++ +.++...+++ |+|||+|+....+ +..+....+|..||.++++.|++......++++|++.+.- .
T Consensus 90 ~~~LGis~~D~~~l~~eV--~ivih~AAtvrFd---e~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~ 164 (467)
T KOG1221|consen 90 EPDLGISESDLRTLADEV--NIVIHSAATVRFD---EPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGH 164 (467)
T ss_pred CcccCCChHHHHHHHhcC--CEEEEeeeeeccc---hhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccccc
Confidence 64 4556666766 9999999976543 3446789999999999999999987666999999987751 1
Q ss_pred CCCCCCCCCC--CC-----------------------CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 213 NKKVPFSEKD--RT-----------------------DQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 213 ~~~~~~~e~~--~~-----------------------~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
..+.++.+.. .+ ....+.|.-+|+.+|.++...++ +++++|+||+.|.+....
T Consensus 165 i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~--~lPivIiRPsiI~st~~E 242 (467)
T KOG1221|consen 165 IEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE--NLPLVIIRPSIITSTYKE 242 (467)
T ss_pred ccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc--CCCeEEEcCCceeccccC
Confidence 1122222211 00 01247799999999999988765 899999999999886543
Q ss_pred CC-CcH------HHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCC
Q 042406 268 PD-MAY------FFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGN 340 (424)
Q Consensus 268 ~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 340 (424)
+= +++ ..++-..-+|.--.+. .+.+...|+|.+|.|+.+++.+.-....... ..+..+||+++
T Consensus 243 P~pGWidn~~gp~g~i~g~gkGvlr~~~---~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~-------~~~~~IY~~ts 312 (467)
T KOG1221|consen 243 PFPGWIDNLNGPDGVIIGYGKGVLRCFL---VDPKAVADIIPVDMVVNAMIASAWQHAGNSK-------EKTPPIYHLTS 312 (467)
T ss_pred CCCCccccCCCCceEEEEeccceEEEEE---EccccccceeeHHHHHHHHHHHHHHHhccCC-------CCCCcEEEecc
Confidence 20 000 0011111222222233 4678899999999999999976633221110 02237999999
Q ss_pred C--CcccHHHHHHHHHHHhC
Q 042406 341 T--TPVPVSRLVSLLEKILK 358 (424)
Q Consensus 341 ~--~~~s~~el~~~i~~~~g 358 (424)
+ .++++.++.+...+...
T Consensus 313 s~~Np~t~~~~~e~~~~~~~ 332 (467)
T KOG1221|consen 313 SNDNPVTWGDFIELALRYFE 332 (467)
T ss_pred cccCcccHHHHHHHHHHhcc
Confidence 4 67999999999998875
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=151.80 Aligned_cols=196 Identities=12% Similarity=0.052 Sum_probs=137.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-Ccc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-AFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~~d 156 (424)
|+|+||||+|+||++++++|+++| ..|+...|+... .....++.++++|++|.++++++.+.. ++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~~Dls~~~~~~~~~~~~~~id 69 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKP-----------DFQHDNVQWHALDVTDEAEIKQLSEQFTQLD 69 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCcc-----------ccccCceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 689999999999999999999996 556655663321 012357889999999999988876654 579
Q ss_pred EEEEcccccCchh-------hc---cChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 157 HVMHLAAQAGVRY-------AM---QNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 157 ~vi~~Ag~~~~~~-------~~---~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
+||||||...... .. +.....+.+|+.++..+++.+.. .+. ++++++||.. +.....
T Consensus 70 ~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~-~~i~~iss~~--~~~~~~------ 140 (235)
T PRK09009 70 WLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSES-AKFAVISAKV--GSISDN------ 140 (235)
T ss_pred EEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCC-ceEEEEeecc--cccccC------
Confidence 9999999864210 01 11246889999998777666543 333 3788888732 211000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
...+...|+++|++.+.+++.++.+ .++++..|.||.+.++.... +.... ..
T Consensus 141 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~----------~~~~~------------~~ 197 (235)
T PRK09009 141 -RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKP----------FQQNV------------PK 197 (235)
T ss_pred -CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcc----------hhhcc------------cc
Confidence 1134568999999999999999865 37899999999998764321 00100 01
Q ss_pred cccccHHHHHHHHHHHhhhcc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~ 318 (424)
..++..+|+|++++.++....
T Consensus 198 ~~~~~~~~~a~~~~~l~~~~~ 218 (235)
T PRK09009 198 GKLFTPEYVAQCLLGIIANAT 218 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCC
Confidence 125788999999999998764
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-18 Score=143.59 Aligned_cols=214 Identities=20% Similarity=0.210 Sum_probs=157.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-C
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-A 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~ 154 (424)
++.|+.|++||+.-+||+.+++.|++.|++|+.+.|+........++ ...-++.+.+|+++-+++.+.+..+ .
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e------~p~~I~Pi~~Dls~wea~~~~l~~v~p 77 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKE------TPSLIIPIVGDLSAWEALFKLLVPVFP 77 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhh------CCcceeeeEecccHHHHHHHhhcccCc
Confidence 46899999999999999999999999999999999965433332221 2234889999999999999888776 5
Q ss_pred ccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|.++||||+.... ....+.+..|++|+.+..++.+.. .....+..||.+||.+..- +..
T Consensus 78 idgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R------------~~~ 145 (245)
T KOG1207|consen 78 IDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIR------------PLD 145 (245)
T ss_pred hhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccc------------ccC
Confidence 69999999986432 345566789999999988877763 3344555899999965432 224
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
..+.|+++|.+.+.+.+.++-+. ++|+..+.|..|+..-+..+..-+.--+.++..-|+. -|.-+
T Consensus 146 nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~K~k~mL~riPl~------------rFaEV 213 (245)
T KOG1207|consen 146 NHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPDKKKKMLDRIPLK------------RFAEV 213 (245)
T ss_pred CceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCchhccchhhhCchh------------hhhHH
Confidence 56889999999999999998776 5899999999998754432211111222233332222 27889
Q ss_pred HHHHHHHHHHhhhccc
Q 042406 304 DDIVKGCLAGLDTAKK 319 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~ 319 (424)
+.++.|++.++.....
T Consensus 214 ~eVVnA~lfLLSd~ss 229 (245)
T KOG1207|consen 214 DEVVNAVLFLLSDNSS 229 (245)
T ss_pred HHHHhhheeeeecCcC
Confidence 9999999988876553
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.7e-17 Score=146.23 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=129.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+.++|-|+|||+-++.|..||++|.++|+.|.+.+..++..+...... .+++...++.|++++++++++.+-+
T Consensus 26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~-----~s~rl~t~~LDVT~~esi~~a~~~V~~ 100 (322)
T KOG1610|consen 26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGET-----KSPRLRTLQLDVTKPESVKEAAQWVKK 100 (322)
T ss_pred ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhh-----cCCcceeEeeccCCHHHHHHHHHHHHH
Confidence 466788999999999999999999999999999996555433322222 1678899999999999999888654
Q ss_pred -----CccEEEEcccccCch-----hhccChHHHHHHHHHHHHH----HHHHHHhcCCCCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVN----LLETCKSSDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~----ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
+.-.||||||+.... ...++....+++|+.|+.. ++...+++. .|+|++||.+.=-
T Consensus 101 ~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar--GRvVnvsS~~GR~-------- 170 (322)
T KOG1610|consen 101 HLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR--GRVVNVSSVLGRV-------- 170 (322)
T ss_pred hcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc--CeEEEecccccCc--------
Confidence 467899999975431 1234557899999999654 455556654 3999999965511
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTV 261 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v 261 (424)
+.+...+|+.||++.|.+...+.++. |+++.+|-||..
T Consensus 171 ----~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~f 211 (322)
T KOG1610|consen 171 ----ALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGFF 211 (322)
T ss_pred ----cCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCcc
Confidence 11356889999999999999998774 999999999943
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-16 Score=156.21 Aligned_cols=191 Identities=18% Similarity=0.132 Sum_probs=130.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+..... ... ....+..+.+|++|.+++.+.+.++
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~----~~~--~~~~v~~v~~Dvsd~~~v~~~l~~I-- 246 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLE----ING--EDLPVKTLHWQVGQEAALAELLEKV-- 246 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----Hhh--cCCCeEEEEeeCCCHHHHHHHhCCC--
Confidence 46789999999999999999999999999999999865432111 111 1234678899999999999988755
Q ss_pred cEEEEcccccCc-hhhccChHHHHHHHHHHHHHHHHHHHh----cCC---CCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 042406 156 THVMHLAAQAGV-RYAMQNPNSYVESNIAGFVNLLETCKS----SDP---QPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227 (424)
Q Consensus 156 d~vi~~Ag~~~~-~~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~---~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~ 227 (424)
|++|||||.... +...++.+..+++|+.|+.++++++.+ .+. +..+|++|++.. . + ..
T Consensus 247 DiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~-~------------~-~~ 312 (406)
T PRK07424 247 DILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEV-N------------P-AF 312 (406)
T ss_pred CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccccc-c------------C-CC
Confidence 999999997532 222334467899999999998887643 221 113555554321 1 1 12
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHH
Q 042406 228 ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIV 307 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 307 (424)
...|++||.+.+.+..-.....++.+..+.||.+..+ + .+ ...+..+|+|
T Consensus 313 ~~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~t~-----~------------~~-------------~~~~spe~vA 362 (406)
T PRK07424 313 SPLYELSKRALGDLVTLRRLDAPCVVRKLILGPFKSN-----L------------NP-------------IGVMSADWVA 362 (406)
T ss_pred chHHHHHHHHHHHHHHHHHhCCCCceEEEEeCCCcCC-----C------------Cc-------------CCCCCHHHHH
Confidence 3569999999998864333334565666666443211 0 00 0146789999
Q ss_pred HHHHHHhhhcc
Q 042406 308 KGCLAGLDTAK 318 (424)
Q Consensus 308 ~a~~~~~~~~~ 318 (424)
+.++.++++..
T Consensus 363 ~~il~~i~~~~ 373 (406)
T PRK07424 363 KQILKLAKRDF 373 (406)
T ss_pred HHHHHHHHCCC
Confidence 99999998765
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-17 Score=138.09 Aligned_cols=170 Identities=16% Similarity=0.181 Sum_probs=129.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
...|.+||||||+++||..|+++|.+.|-+|++..|+...+.+.. ...+.+....||+.|.++.+++++..
T Consensus 2 k~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~-------~~~p~~~t~v~Dv~d~~~~~~lvewLkk 74 (245)
T COG3967 2 KTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAK-------AENPEIHTEVCDVADRDSRRELVEWLKK 74 (245)
T ss_pred cccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHH-------hcCcchheeeecccchhhHHHHHHHHHh
Confidence 357889999999999999999999999999999999755433322 23468889999999999877766544
Q ss_pred ---CccEEEEcccccCc------hhhccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV------RYAMQNPNSYVESNIAGFVNLLETCKSS---DPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~ll~a~~~~---~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
..++||||||+... ....++.+..+.+|+.++..|..+...+ .....||.+||.-.|-..
T Consensus 75 ~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm-------- 146 (245)
T COG3967 75 EYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPM-------- 146 (245)
T ss_pred hCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCcc--------
Confidence 57999999998643 1222334678899999987776665432 113389999997776432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGP 264 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~ 264 (424)
...-.|+++|++...+...++++. ++++.-+-|+.|-.+
T Consensus 147 ----~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 147 ----ASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred ----cccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 223469999999999988887664 789999999998775
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-16 Score=150.01 Aligned_cols=232 Identities=10% Similarity=-0.012 Sum_probs=139.6
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCC------chhhh-HHHHHhhhh--------------ccCC
Q 042406 76 STRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNN------YYETS-LKKARKGLL--------------ERAG 132 (424)
Q Consensus 76 ~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~------~~~~~-~~~~~~~~~--------------~~~~ 132 (424)
.+++|+++||||+ ++||+++++.|+++|++|++.++... ..+.. ......... .-..
T Consensus 5 ~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~ 84 (299)
T PRK06300 5 DLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDT 84 (299)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCC
Confidence 4689999999995 99999999999999999999875410 00000 000000000 0011
Q ss_pred eEEEEccCCC--------HHHHHHHhhcc-----CccEEEEcccccC---c---hhhccChHHHHHHHHHHHHHHHHHHH
Q 042406 133 VFVIDADIND--------KSLLDKIFNVV-----AFTHVMHLAAQAG---V---RYAMQNPNSYVESNIAGFVNLLETCK 193 (424)
Q Consensus 133 v~~~~~Dl~d--------~~~v~~~~~~~-----~~d~vi~~Ag~~~---~---~~~~~~~~~~~~~N~~g~~~ll~a~~ 193 (424)
.+-+.+|+.+ .++++++++.+ ++|+||||||... . ....++.+..+++|+.|..++++++.
T Consensus 85 ~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~ 164 (299)
T PRK06300 85 PEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFG 164 (299)
T ss_pred CEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1222233322 12355555443 5899999998632 1 12233446789999999988888776
Q ss_pred hcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCCCC
Q 042406 194 SSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTDQPA-SLYAATKKAGEAIAHAYNHIY----GLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 194 ~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~~----~i~~~~vrp~~v~G~~~~ 267 (424)
.... ..++|++||....... ... ..|++||.+.+.+++.++.++ |+++++|.||.+-.+...
T Consensus 165 p~m~~~G~ii~iss~~~~~~~------------p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~ 232 (299)
T PRK06300 165 PIMNPGGSTISLTYLASMRAV------------PGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAGK 232 (299)
T ss_pred HHhhcCCeEEEEeehhhcCcC------------CCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhhh
Confidence 5321 2378888875443210 112 379999999999999998763 799999999998776321
Q ss_pred CCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 268 PDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
.-.............. ++ ..+...+|++.+++.++...... ..|+++.+.++
T Consensus 233 ~~~~~~~~~~~~~~~~--p~----------~r~~~peevA~~v~~L~s~~~~~----------itG~~i~vdGG 284 (299)
T PRK06300 233 AIGFIERMVDYYQDWA--PL----------PEPMEAEQVGAAAAFLVSPLASA----------ITGETLYVDHG 284 (299)
T ss_pred cccccHHHHHHHHhcC--CC----------CCCcCHHHHHHHHHHHhCccccC----------CCCCEEEECCC
Confidence 1000011111111111 11 12557899999999887654322 33477777655
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=152.42 Aligned_cols=218 Identities=15% Similarity=0.142 Sum_probs=152.6
Q ss_pred cCC--ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc------CccE
Q 042406 86 GAA--GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV------AFTH 157 (424)
Q Consensus 86 Gg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~------~~d~ 157 (424)
|++ ++||+.+++.|+++|++|++.+|+.+...........+ .+..++.+|++|.++++++++.+ ++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKE----YGAEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHH----TTSEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHH----cCCceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 666 99999999999999999999999776543333333322 23447999999999998887653 6899
Q ss_pred EEEcccccCc----hh----hccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCCC
Q 042406 158 VMHLAAQAGV----RY----AMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPA 228 (424)
Q Consensus 158 vi~~Ag~~~~----~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~ 228 (424)
||||++.... .. ..++....+++|+.+...+++++.+.. ....+|++||....... ...
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~------------~~~ 144 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPM------------PGY 144 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBS------------TTT
T ss_pred EEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccC------------ccc
Confidence 9999998654 11 122335689999999888877764321 11379999987554321 334
Q ss_pred ChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHH
Q 042406 229 SLYAATKKAGEAIAHAYNHI----YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYID 304 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~----~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 304 (424)
..|+.+|.+.+.+++.++.+ +|||+++|.||.+..+..........+...+....++. -+...+
T Consensus 145 ~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl~------------r~~~~~ 212 (241)
T PF13561_consen 145 SAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPLG------------RLGTPE 212 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTTS------------SHBEHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhccccccchhhhhhhhhccC------------CCcCHH
Confidence 68999999999999998865 47999999999998763110000122333333333221 156789
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 305 Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
|+|.+++.++...... ..|+++.+.+|
T Consensus 213 evA~~v~fL~s~~a~~----------itG~~i~vDGG 239 (241)
T PF13561_consen 213 EVANAVLFLASDAASY----------ITGQVIPVDGG 239 (241)
T ss_dssp HHHHHHHHHHSGGGTT----------GTSEEEEESTT
T ss_pred HHHHHHHHHhCccccC----------ccCCeEEECCC
Confidence 9999999988776432 45588888776
|
... |
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-16 Score=138.14 Aligned_cols=168 Identities=21% Similarity=0.170 Sum_probs=124.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
++++||||+|+||.+++++|+++|+ .|+++.|+...................++.++.+|+++.+++.++++..
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999996 6888888654432221101111112356788999999999988887654
Q ss_pred CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc-cCCCCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSV-YGVNKKVPFSEKDRTDQPA 228 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~v-yg~~~~~~~~e~~~~~~~~ 228 (424)
++|+|||+||...... ..++.+..+++|+.++.++++++++.+.+ ++|++||... ++. ...
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~ii~~ss~~~~~~~-------------~~~ 146 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLD-FFVLFSSVAGVLGN-------------PGQ 146 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcc-eEEEEccHHHhcCC-------------CCc
Confidence 4699999999754321 22344678999999999999999877655 8888888544 332 334
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEecccc
Q 042406 229 SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVY 262 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~ 262 (424)
..|+.+|.+.+.+++.+.. .+++++++.||.+-
T Consensus 147 ~~y~~sk~~~~~~~~~~~~-~~~~~~~~~~g~~~ 179 (180)
T smart00822 147 ANYAAANAFLDALAAHRRA-RGLPATSINWGAWA 179 (180)
T ss_pred hhhHHHHHHHHHHHHHHHh-cCCceEEEeecccc
Confidence 6799999999999976654 58999999998764
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.73 E-value=8e-17 Score=139.62 Aligned_cols=154 Identities=19% Similarity=0.171 Sum_probs=117.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCC--CCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNF--NNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~--~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
|+++||||+++||+.++++|+++|. .|+++.|+ .+.......+.+ ....++.++++|+++.++++++++.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELK---APGAKITFIECDLSDPESIRALIEEVIKR 77 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHH---HTTSEEEEEESETTSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccc---ccccccccccccccccccccccccccccc
Confidence 5899999999999999999999965 77888886 222222211112 12378899999999999999888766
Q ss_pred --CccEEEEcccccCchhhc----cChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRYAM----QNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~~~----~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~ 227 (424)
++|+||||||........ ++.+..+++|+.+...+.+++...+ ..+||++||....-. ...
T Consensus 78 ~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~------------~~~ 144 (167)
T PF00106_consen 78 FGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQG-GGKIVNISSIAGVRG------------SPG 144 (167)
T ss_dssp HSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHT-TEEEEEEEEGGGTSS------------STT
T ss_pred cccccccccccccccccccccccchhhhhccccccceeeeeeehheecc-ccceEEecchhhccC------------CCC
Confidence 689999999987643222 2335799999999999999888844 349999999766532 134
Q ss_pred CChHHHHHHHHHHHHHHHHHHh
Q 042406 228 ASLYAATKKAGEAIAHAYNHIY 249 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~~ 249 (424)
...|+.+|.+.+.+++.+++++
T Consensus 145 ~~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 145 MSAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999998763
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=142.24 Aligned_cols=211 Identities=16% Similarity=0.145 Sum_probs=155.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
++|+||||+.+||..++..+..+|++|+++.|+.++..+..+...... ....|.+..+|+.|.+++..++++. .
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~-~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~ 112 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLT-QVEDVSYKSVDVIDYDSVSKVIEELRDLEGP 112 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhh-ccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence 579999999999999999999999999999998877766655443321 2234789999999999999999987 6
Q ss_pred ccEEEEcccccCchhhccC----hHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcc-cCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRYAMQN----PNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSV-YGVNKKVPFSEKDRTD 225 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~----~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~v-yg~~~~~~~~e~~~~~ 225 (424)
+|.+|||||...+....+. .+..+++|..|+.|++.++... ....+|+.+||... ++-
T Consensus 113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i------------- 179 (331)
T KOG1210|consen 113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGI------------- 179 (331)
T ss_pred cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCc-------------
Confidence 8999999998766544333 3568999999999988776443 21127888887433 331
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
...+.|+.+|.+...++..+.++. |+.++..-|+.+-.|+-.... ..+-....+. +.--+.+.
T Consensus 180 ~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En--------~tkP~~t~ii------~g~ss~~~ 245 (331)
T KOG1210|consen 180 YGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFEREN--------KTKPEETKII------EGGSSVIK 245 (331)
T ss_pred ccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCcccccc--------ccCchheeee------cCCCCCcC
Confidence 345889999999999999988764 899999999999999654321 1111111222 11223577
Q ss_pred HHHHHHHHHHHhhhcc
Q 042406 303 IDDIVKGCLAGLDTAK 318 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~ 318 (424)
-+++|++++.=+.+..
T Consensus 246 ~e~~a~~~~~~~~rg~ 261 (331)
T KOG1210|consen 246 CEEMAKAIVKGMKRGN 261 (331)
T ss_pred HHHHHHHHHhHHhhcC
Confidence 8999999997666543
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.9e-15 Score=141.86 Aligned_cols=224 Identities=23% Similarity=0.215 Sum_probs=166.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||||++|++++++|+++|++|+++.|+.+... ... .++++...|+.+.+.+...++++ |.++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~---------~~~-~~v~~~~~d~~~~~~l~~a~~G~--~~~~ 68 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAA---------ALA-GGVEVVLGDLRDPKSLVAGAKGV--DGVL 68 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHH---------hhc-CCcEEEEeccCCHhHHHHHhccc--cEEE
Confidence 57999999999999999999999999999999654221 112 78999999999999999999988 9999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
++.+... . .. ...........+..+++. .+.. +++++|....-. .....|..+|..+|
T Consensus 69 ~i~~~~~-~----~~-~~~~~~~~~~~~~a~~a~-~~~~-~~~~~s~~~~~~--------------~~~~~~~~~~~~~e 126 (275)
T COG0702 69 LISGLLD-G----SD-AFRAVQVTAVVRAAEAAG-AGVK-HGVSLSVLGADA--------------ASPSALARAKAAVE 126 (275)
T ss_pred EEecccc-c----cc-chhHHHHHHHHHHHHHhc-CCce-EEEEeccCCCCC--------------CCccHHHHHHHHHH
Confidence 9887643 1 11 223334444445555444 2333 788888755422 23478999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
..+.+. |+.++++|+..+|...... ........+.+.... +....+++.++|++.++..++..+..
T Consensus 127 ~~l~~s----g~~~t~lr~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~i~~~d~a~~~~~~l~~~~~ 192 (275)
T COG0702 127 AALRSS----GIPYTTLRRAAFYLGAGAA-----FIEAAEAAGLPVIPR-----GIGRLSPIAVDDVAEALAAALDAPAT 192 (275)
T ss_pred HHHHhc----CCCeEEEecCeeeeccchh-----HHHHHHhhCCceecC-----CCCceeeeEHHHHHHHHHHHhcCCcc
Confidence 988886 9999999977776553321 122233334333332 23378999999999999999987752
Q ss_pred cCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccc
Q 042406 320 STGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAET 363 (424)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~ 363 (424)
.+++|.+++++..+..++.+.+....|++...
T Consensus 193 ------------~~~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~ 224 (275)
T COG0702 193 ------------AGRTYELAGPEALTLAELASGLDYTIGRPVGL 224 (275)
T ss_pred ------------cCcEEEccCCceecHHHHHHHHHHHhCCccee
Confidence 23899999998999999999999999988866
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.1e-16 Score=142.18 Aligned_cols=173 Identities=20% Similarity=0.205 Sum_probs=128.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch--hhhHHHHHhhhhcc-CCeEEEEccCCC-HHHHHHHhh
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY--ETSLKKARKGLLER-AGVFVIDADIND-KSLLDKIFN 151 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~-~~v~~~~~Dl~d-~~~v~~~~~ 151 (424)
.+.+|+++||||+++||..+++.|+++|+.|+++.|..+.. +....... ... ..+.+..+|+++ .++++.+++
T Consensus 2 ~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Dvs~~~~~v~~~~~ 78 (251)
T COG1028 2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK---EAGGGRAAAVAADVSDDEESVEALVA 78 (251)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH---hcCCCcEEEEEecCCCCHHHHHHHHH
Confidence 35789999999999999999999999999999998876542 11111111 111 367888999998 888887776
Q ss_pred cc-----CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 152 VV-----AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 152 ~~-----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
.. ++|++|||||.... ....++.+..+.+|+.|...+.+++......++||++||.... ..
T Consensus 79 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~-------- 149 (251)
T COG1028 79 AAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GG-------- 149 (251)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CC--------
Confidence 55 48999999998542 1122344679999999988877754433222289999997765 31
Q ss_pred CCCCCC-CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCC
Q 042406 222 DRTDQP-ASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGP 264 (424)
Q Consensus 222 ~~~~~~-~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~ 264 (424)
.+ ...|+.||++.+.+.+.++.+ .|++++.|.||.+-.+
T Consensus 150 ----~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~ 192 (251)
T COG1028 150 ----PPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTP 192 (251)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence 22 478999999999999999855 4899999999966544
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.4e-16 Score=141.65 Aligned_cols=207 Identities=14% Similarity=0.068 Sum_probs=140.7
Q ss_pred HHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--CccEEEEcccccCchhhcc
Q 042406 95 VSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--AFTHVMHLAAQAGVRYAMQ 172 (424)
Q Consensus 95 l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--~~d~vi~~Ag~~~~~~~~~ 172 (424)
++++|+++|++|++++|+.+... ...++++|++|.++++++++.. ++|+||||||... ..
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~--------------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~ 62 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT--------------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TA 62 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh--------------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CC
Confidence 47899999999999999654310 1346889999999999999865 6899999999753 24
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCC---------------CCCCCCCChHHHHHH
Q 042406 173 NPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEK---------------DRTDQPASLYAATKK 236 (424)
Q Consensus 173 ~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~---------------~~~~~~~~~Y~~sK~ 236 (424)
+.+..+++|+.++.++++++.+.. ...+||++||...|+.....+..+. ..+..+...|+.||.
T Consensus 63 ~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 142 (241)
T PRK12428 63 PVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKE 142 (241)
T ss_pred CHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHH
Confidence 568899999999999999886541 1248999999988863221111110 012245688999999
Q ss_pred HHHHHHHHHH-HH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHH
Q 042406 237 AGEAIAHAYN-HI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLA 312 (424)
Q Consensus 237 ~~e~~~~~~~-~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 312 (424)
+.+.+++.++ .+ .|+++++|+||.+.++-.... ..............+ ...+...+|+|++++.
T Consensus 143 a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~pe~va~~~~~ 210 (241)
T PRK12428 143 ALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDF--RSMLGQERVDSDAKR----------MGRPATADEQAAVLVF 210 (241)
T ss_pred HHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccc--hhhhhhHhhhhcccc----------cCCCCCHHHHHHHHHH
Confidence 9999999888 44 489999999999998743210 000000000000000 1125678999999999
Q ss_pred HhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
++...... ..|+.+.+.+|
T Consensus 211 l~s~~~~~----------~~G~~i~vdgg 229 (241)
T PRK12428 211 LCSDAARW----------INGVNLPVDGG 229 (241)
T ss_pred HcChhhcC----------ccCcEEEecCc
Confidence 87544321 33466777655
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.3e-15 Score=129.60 Aligned_cols=199 Identities=19% Similarity=0.112 Sum_probs=136.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEe-CCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLD-NFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
.+.|+||||+.+||.-|+++|++. |-++++.. |+.+.+ ..+........++++.++.|+++.+++.++++++
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a---~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~i 79 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKA---ATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKI 79 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHh---hHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhh
Confidence 456999999999999999999987 55665554 434432 1111222224689999999999999998888776
Q ss_pred ----CccEEEEcccccCchhhccC-----hHHHHHHHHHHHHHHHHHH----HhcC---------CC-CeEEEecCCccc
Q 042406 154 ----AFTHVMHLAAQAGVRYAMQN-----PNSYVESNIAGFVNLLETC----KSSD---------PQ-PAIVWASSSSVY 210 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~~~~~-----~~~~~~~N~~g~~~ll~a~----~~~~---------~~-~~~v~~SS~~vy 210 (424)
+.|++|||||+...-..... ...++++|..|+..+.+++ ++.. +. ..||++||.+.-
T Consensus 80 Vg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s 159 (249)
T KOG1611|consen 80 VGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS 159 (249)
T ss_pred cccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc
Confidence 57999999998654222222 2368999999865554432 3221 11 168888885432
Q ss_pred -CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCcee
Q 042406 211 -GVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRIT 286 (424)
Q Consensus 211 -g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 286 (424)
+.. ...+..+|.+||.+...+.+++.-+. ++-++.++||+|-..-+.
T Consensus 160 ~~~~----------~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg------------------- 210 (249)
T KOG1611|consen 160 IGGF----------RPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGG------------------- 210 (249)
T ss_pred cCCC----------CCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCC-------------------
Confidence 111 22567899999999999999987553 688899999999754221
Q ss_pred EEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 287 VYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 287 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
.+ .-+.+++-+..++..+.+...
T Consensus 211 -------~~---a~ltveeSts~l~~~i~kL~~ 233 (249)
T KOG1611|consen 211 -------KK---AALTVEESTSKLLASINKLKN 233 (249)
T ss_pred -------CC---cccchhhhHHHHHHHHHhcCc
Confidence 11 145577788888877777654
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-16 Score=131.68 Aligned_cols=166 Identities=17% Similarity=0.115 Sum_probs=123.4
Q ss_pred CCCeEEEEcC-CChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 78 RGLTVLVTGA-AGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 78 ~~~~vlItGg-~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
..|.|||||+ .|+||.+|+++|.+.|+.|+...|..+.-.. .....++..++.|+++++.+.++..++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~--------L~~~~gl~~~kLDV~~~~~V~~v~~evr~~ 77 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQ--------LAIQFGLKPYKLDVSKPEEVVTVSGEVRAN 77 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhh--------HHHhhCCeeEEeccCChHHHHHHHHHHhhC
Confidence 4567888876 5899999999999999999999996543211 112357899999999999998877655
Q ss_pred ---CccEEEEcccccCc-hhhc---cChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-RYAM---QNPNSYVESNIAGFVNLLETCKSS--DPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-~~~~---~~~~~~~~~N~~g~~~ll~a~~~~--~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
+.|+++||||..-. +..+ .+.+.+|++|+.|..+..++..+. ..+..||++.|..+|-.
T Consensus 78 ~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vp------------ 145 (289)
T KOG1209|consen 78 PDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVP------------ 145 (289)
T ss_pred CCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEec------------
Confidence 57999999997422 2222 223679999999977666655421 12338999999877752
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccC
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYG 263 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G 263 (424)
..-.+.|.+||++...+.+.+.-+ .|++++.+-+|.|-.
T Consensus 146 fpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T 187 (289)
T KOG1209|consen 146 FPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVAT 187 (289)
T ss_pred cchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceec
Confidence 133478999999999998888644 488888888887654
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-14 Score=117.62 Aligned_cols=203 Identities=17% Similarity=0.173 Sum_probs=143.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|.|.||||-+|+.|+++.++|||+|+++.|++++.. ..+++..++.|+.|++++.+.+.+. |+||
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~-----------~~~~~~i~q~Difd~~~~a~~l~g~--DaVI 67 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLA-----------ARQGVTILQKDIFDLTSLASDLAGH--DAVI 67 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcc-----------ccccceeecccccChhhhHhhhcCC--ceEE
Confidence 78999999999999999999999999999999654211 1267889999999999999999977 9999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
..-+... .+.+... ......|++..+.+++. |++.+..++-...... . .--+.+..|...|..++..+|
T Consensus 68 sA~~~~~-----~~~~~~~---~k~~~~li~~l~~agv~-RllVVGGAGSL~id~g-~-rLvD~p~fP~ey~~~A~~~ae 136 (211)
T COG2910 68 SAFGAGA-----SDNDELH---SKSIEALIEALKGAGVP-RLLVVGGAGSLEIDEG-T-RLVDTPDFPAEYKPEALAQAE 136 (211)
T ss_pred EeccCCC-----CChhHHH---HHHHHHHHHHHhhcCCe-eEEEEcCccceEEcCC-c-eeecCCCCchhHHHHHHHHHH
Confidence 8766431 1111111 11256678888888876 8888877544322221 1 111223356667777888877
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
++..+..+.++.||.|.|...|-|+.+.+. ..-|+...+... .+ -++|+.+|.|.+++..++++..
T Consensus 137 -~L~~Lr~~~~l~WTfvSPaa~f~PGerTg~--------yrlggD~ll~n~--~G---~SrIS~aDYAiA~lDe~E~~~h 202 (211)
T COG2910 137 -FLDSLRAEKSLDWTFVSPAAFFEPGERTGN--------YRLGGDQLLVNA--KG---ESRISYADYAIAVLDELEKPQH 202 (211)
T ss_pred -HHHHHhhccCcceEEeCcHHhcCCccccCc--------eEeccceEEEcC--CC---ceeeeHHHHHHHHHHHHhcccc
Confidence 455666666799999999999999765442 233444444321 22 2699999999999999998875
Q ss_pred c
Q 042406 320 S 320 (424)
Q Consensus 320 ~ 320 (424)
.
T Consensus 203 ~ 203 (211)
T COG2910 203 I 203 (211)
T ss_pred c
Confidence 3
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=126.10 Aligned_cols=165 Identities=21% Similarity=0.207 Sum_probs=115.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
+++||||+|+||..+++.|+++|. +|+++.|+.............-......+.++++|++|++++.++++.. +
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 589999999999999999999985 7999999732111111112211123458999999999999999999876 5
Q ss_pred ccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc-ccCCCCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSS-VYGVNKKVPFSEKDRTDQPAS 229 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~-vyg~~~~~~~~e~~~~~~~~~ 229 (424)
++.|||+||....... .++.+..+..-+.|+.+|.++....... .||.+||.+ ++|. ....
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~-~~i~~SSis~~~G~-------------~gq~ 147 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLD-FFILFSSISSLLGG-------------PGQS 147 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTS-EEEEEEEHHHHTT--------------TTBH
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCC-eEEEECChhHhccC-------------cchH
Confidence 7899999998543211 2223567888999999999999887776 889989854 5664 4568
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEecc
Q 042406 230 LYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260 (424)
Q Consensus 230 ~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~ 260 (424)
.|+++-...+.+++.... .|.++.+|.-+.
T Consensus 148 ~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~ 177 (181)
T PF08659_consen 148 AYAAANAFLDALARQRRS-RGLPAVSINWGA 177 (181)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTSEEEEEEE-E
T ss_pred hHHHHHHHHHHHHHHHHh-CCCCEEEEEccc
Confidence 999999999998887655 489988888654
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-14 Score=163.21 Aligned_cols=173 Identities=17% Similarity=0.156 Sum_probs=132.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCch----------hh----------------------------
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYY----------ET---------------------------- 118 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~----------~~---------------------------- 118 (424)
+++++|||||+++||..++++|+++ |.+|++++|+.... ..
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 5899999999999999999999998 69999999972100 00
Q ss_pred -----hHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhcc----CccEEEEcccccCch----hhccChHHHHHHHHHH
Q 042406 119 -----SLKKARKG-LLERAGVFVIDADINDKSLLDKIFNVV----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAG 184 (424)
Q Consensus 119 -----~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~~----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g 184 (424)
........ ......+.++.+|++|.+++.++++.+ ++|.||||||+.... ...++.+..+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 00000000 012346889999999999999888765 589999999985432 2233456799999999
Q ss_pred HHHHHHHHHhcCCCCeEEEecCCcc-cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEEecccc
Q 042406 185 FVNLLETCKSSDPQPAIVWASSSSV-YGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSITGLRFFTVY 262 (424)
Q Consensus 185 ~~~ll~a~~~~~~~~~~v~~SS~~v-yg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~i~~~~vrp~~v~ 262 (424)
+.++++++.....+ +||++||... ||. .....|+.+|.+.+.+.+.++.++ ++++++|.||.+-
T Consensus 2156 ~~~Ll~al~~~~~~-~IV~~SSvag~~G~-------------~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wd 2221 (2582)
T TIGR02813 2156 LLSLLAALNAENIK-LLALFSSAAGFYGN-------------TGQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWD 2221 (2582)
T ss_pred HHHHHHHHHHhCCC-eEEEEechhhcCCC-------------CCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeec
Confidence 99999999876654 8999999654 442 345789999999999999988776 6899999999876
Q ss_pred CC
Q 042406 263 GP 264 (424)
Q Consensus 263 G~ 264 (424)
|+
T Consensus 2222 tg 2223 (2582)
T TIGR02813 2222 GG 2223 (2582)
T ss_pred CC
Confidence 64
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=130.57 Aligned_cols=172 Identities=17% Similarity=0.150 Sum_probs=130.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH----HHHHHhhccCc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS----LLDKIFNVVAF 155 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~----~v~~~~~~~~~ 155 (424)
+=.+|||||.+||++.+++|++||.+|+++.|+.++++...++..... ...+.++..|.++.+ .+.+.+++.++
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~--~vev~~i~~Dft~~~~~ye~i~~~l~~~~V 127 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKY--KVEVRIIAIDFTKGDEVYEKLLEKLAGLDV 127 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHh--CcEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence 458999999999999999999999999999999988877666554432 256889999998655 47777777788
Q ss_pred cEEEEcccccC--chhhccCh----HHHHHHHHHHHHHHH----HHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 156 THVMHLAAQAG--VRYAMQNP----NSYVESNIAGFVNLL----ETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 156 d~vi~~Ag~~~--~~~~~~~~----~~~~~~N~~g~~~ll----~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
.++|||+|... +....+.+ ...+.+|+.++..+. .-|.+.+.+ .||++||.+..- +.
T Consensus 128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G-~IvnigS~ag~~------------p~ 194 (312)
T KOG1014|consen 128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKG-IIVNIGSFAGLI------------PT 194 (312)
T ss_pred EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCc-eEEEeccccccc------------cC
Confidence 99999999876 22222222 346778888855544 444444443 899999976643 22
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCC
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWG 266 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~ 266 (424)
+-.+.|++||...+.+...+.+++ |+.+..+-|..|-++..
T Consensus 195 p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm~ 238 (312)
T KOG1014|consen 195 PLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKMA 238 (312)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheecccc
Confidence 446889999999999999888776 89999999999987643
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-14 Score=122.23 Aligned_cols=272 Identities=16% Similarity=0.101 Sum_probs=174.5
Q ss_pred CCeEEEEcCCChhHHHHHH-----HHHhCC----CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH-HHHH
Q 042406 79 GLTVLVTGAAGFVGSHVSL-----ALKKRG----DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS-LLDK 148 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~-----~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~-~v~~ 148 (424)
+++.++-+++|+|+..|.- ++-+.+ |.|+++.|.+... ++.+-..|..-.. ++.
T Consensus 12 sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~---------------ritw~el~~~Gip~sc~- 75 (315)
T KOG3019|consen 12 SRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA---------------RITWPELDFPGIPISCV- 75 (315)
T ss_pred cccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc---------------ccccchhcCCCCceehH-
Confidence 3456888999999988876 444444 8999999965421 2222222221100 111
Q ss_pred HhhccCccEEEEcccccCchhhccChHHHHHHHHHH-----HHHHHHHHHhcCCC-CeEEEecCCcccCCCCCCCCCCCC
Q 042406 149 IFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAG-----FVNLLETCKSSDPQ-PAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 149 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g-----~~~ll~a~~~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
+. +..+.+|+...--+ ....|+-|+.| |..|+++...+... +.+|.+|..++|-......++|++
T Consensus 76 --a~--vna~g~n~l~P~rR-----Wsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~ 146 (315)
T KOG3019|consen 76 --AG--VNAVGNNALLPIRR-----WSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKI 146 (315)
T ss_pred --HH--HhhhhhhccCchhh-----cCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEecccccccccccc
Confidence 11 13344454432212 23345555554 77888888776533 379999999999988777888887
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--CCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP--DMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.. ..++....--++.|..++..++ .+++++||.|.|.|.++.. .|+++ -++-.|+++ |++++.++|
T Consensus 147 ~~-qgfd~~srL~l~WE~aA~~~~~--~~r~~~iR~GvVlG~gGGa~~~M~lp---F~~g~GGPl------GsG~Q~fpW 214 (315)
T KOG3019|consen 147 VH-QGFDILSRLCLEWEGAALKANK--DVRVALIRIGVVLGKGGGALAMMILP---FQMGAGGPL------GSGQQWFPW 214 (315)
T ss_pred cc-CChHHHHHHHHHHHHHhhccCc--ceeEEEEEEeEEEecCCcchhhhhhh---hhhccCCcC------CCCCeeeee
Confidence 65 5555555444455555544443 5899999999999987642 12111 122334443 789999999
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCC------C-C
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN------G-D 373 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~------~-~ 373 (424)
||++|++..+..+++++.-. ++.|-..+++++..||.+.+.+.++++.-+ |.|.. + +
T Consensus 215 IHv~DL~~li~~ale~~~v~-------------GViNgvAP~~~~n~Ef~q~lg~aL~Rp~~~---pvP~fvvqA~fG~e 278 (315)
T KOG3019|consen 215 IHVDDLVNLIYEALENPSVK-------------GVINGVAPNPVRNGEFCQQLGSALSRPSWL---PVPDFVVQALFGPE 278 (315)
T ss_pred eehHHHHHHHHHHHhcCCCC-------------ceecccCCCccchHHHHHHHHHHhCCCccc---CCcHHHHHHHhCcc
Confidence 99999999999999996543 799999999999999999999999988743 22210 1 1
Q ss_pred cccccCC-----hHHHHhHcCCcccC-CHHHHHHHHH
Q 042406 374 VQFTHAN-----ISLAQRELGYMPTT-DLETGLKKFV 404 (424)
Q Consensus 374 ~~~~~~d-----~s~~~~~LG~~p~~-~l~~~l~~~v 404 (424)
-...++. ..|+ .++||+.++ .+.+++++.+
T Consensus 279 rA~~vLeGqKV~Pqra-l~~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 279 RATVVLEGQKVLPQRA-LELGFEFKYPYVKDALRAIM 314 (315)
T ss_pred ceeEEeeCCcccchhH-hhcCceeechHHHHHHHHHh
Confidence 1112222 2344 348998876 4667776654
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-14 Score=119.28 Aligned_cols=171 Identities=19% Similarity=0.206 Sum_probs=130.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+.++-..+||||.+++|+..++.|++.|+.|.++|-..++.....++ -..++.|..+|++++++++.++...
T Consensus 6 s~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vake------lg~~~vf~padvtsekdv~aala~ak~ 79 (260)
T KOG1199|consen 6 STKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKE------LGGKVVFTPADVTSEKDVRAALAKAKA 79 (260)
T ss_pred hhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHH------hCCceEEeccccCcHHHHHHHHHHHHh
Confidence 45777899999999999999999999999999999866544333222 2357899999999999999988765
Q ss_pred ---CccEEEEcccccCc----------hhhccChHHHHHHHHHHHHHHHHHHHh----c-----CCCCeEEEecCCcccC
Q 042406 154 ---AFTHVMHLAAQAGV----------RYAMQNPNSYVESNIAGFVNLLETCKS----S-----DPQPAIVWASSSSVYG 211 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~----------~~~~~~~~~~~~~N~~g~~~ll~a~~~----~-----~~~~~~v~~SS~~vyg 211 (424)
+.|.++||||+... ....++....+++|+.||+|+++.... + +-...+|.+.|...|.
T Consensus 80 kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafd 159 (260)
T KOG1199|consen 80 KFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFD 159 (260)
T ss_pred hccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeec
Confidence 68999999998532 112334567889999999999875421 1 2222678888877776
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 042406 212 VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGP 264 (424)
Q Consensus 212 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~ 264 (424)
.+ .....|++||.+.-.+..-+++.. |+|+..|-||.+-.|
T Consensus 160 gq------------~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~tp 203 (260)
T KOG1199|consen 160 GQ------------TGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDTP 203 (260)
T ss_pred Cc------------cchhhhhcccCceEeeechhhhhcccCceEEEeecccccCCh
Confidence 43 345889999998876666555543 899999999987666
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.8e-12 Score=120.02 Aligned_cols=216 Identities=20% Similarity=0.144 Sum_probs=131.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH-HHHHhhc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL-LDKIFNV 152 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-v~~~~~~ 152 (424)
..+.+.++|+|+||+|.+|+.+++.|+++|+.|+++.|+.+....... ..........+..|.....+ ...+...
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~----~~~~d~~~~~v~~~~~~~~d~~~~~~~~ 149 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG----VFFVDLGLQNVEADVVTAIDILKKLVEA 149 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc----ccccccccceeeeccccccchhhhhhhh
Confidence 345677899999999999999999999999999999997654333222 12233455555556554433 3334433
Q ss_pred cC--ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCCh
Q 042406 153 VA--FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL 230 (424)
Q Consensus 153 ~~--~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~ 230 (424)
+. ..+++-++|-.+.. + |...-..+...|++|+++||+..+++ |||++||.+.-..+.. .+.......
T Consensus 150 ~~~~~~~v~~~~ggrp~~--e-d~~~p~~VD~~g~knlvdA~~~aGvk-~~vlv~si~~~~~~~~------~~~~~~~~~ 219 (411)
T KOG1203|consen 150 VPKGVVIVIKGAGGRPEE--E-DIVTPEKVDYEGTKNLVDACKKAGVK-RVVLVGSIGGTKFNQP------PNILLLNGL 219 (411)
T ss_pred ccccceeEEecccCCCCc--c-cCCCcceecHHHHHHHHHHHHHhCCc-eEEEEEeecCcccCCC------chhhhhhhh
Confidence 32 34566665543211 1 22334568889999999999999997 9999988655322110 000000123
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHH
Q 042406 231 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 310 (424)
+-.+|+.+|.++. +.|+++++|||+...-...... .......-..+ ..+..--.+.-.|+|+.+
T Consensus 220 ~~~~k~~~e~~~~----~Sgl~ytiIR~g~~~~~~~~~~--------~~~~~~~~~~~----~~~~~~~~i~r~~vael~ 283 (411)
T KOG1203|consen 220 VLKAKLKAEKFLQ----DSGLPYTIIRPGGLEQDTGGQR--------EVVVDDEKELL----TVDGGAYSISRLDVAELV 283 (411)
T ss_pred hhHHHHhHHHHHH----hcCCCcEEEeccccccCCCCcc--------eecccCccccc----cccccceeeehhhHHHHH
Confidence 3467777777665 4499999999998765433211 00111111111 111111366778999999
Q ss_pred HHHhhhccc
Q 042406 311 LAGLDTAKK 319 (424)
Q Consensus 311 ~~~~~~~~~ 319 (424)
+.++..+..
T Consensus 284 ~~all~~~~ 292 (411)
T KOG1203|consen 284 AKALLNEAA 292 (411)
T ss_pred HHHHhhhhh
Confidence 998887763
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-11 Score=104.54 Aligned_cols=88 Identities=15% Similarity=0.213 Sum_probs=68.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+++||..+++.|+++|++|++++|+.+........... ....+.++.+|++|.+++.++++..
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~v~~~v~~~~~ 89 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITN---LGGEALFVSYDMEKQGDWQRVISITLN 89 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999875433222222211 1245678899999999988876543
Q ss_pred ---CccEEEEcccccC
Q 042406 154 ---AFTHVMHLAAQAG 166 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~ 166 (424)
++|++|||||...
T Consensus 90 ~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 90 AFSRIDMLFQNAGLYK 105 (169)
T ss_pred HcCCCCEEEECCCcCC
Confidence 6899999999755
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.1e-11 Score=104.53 Aligned_cols=182 Identities=15% Similarity=0.117 Sum_probs=128.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-----eEEEEeCCCCchhhhHHHHHhhhhc-cCCeEEEEccCCCHHHHHHHhhc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-----GVLGLDNFNNYYETSLKKARKGLLE-RAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
.|.++|||++++||..|+.+|++... .+++.+|+-++.++.......-... .-.++++.+|+++..++.++-++
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~d 82 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKD 82 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHH
Confidence 46799999999999999999999864 4778899988887776665543221 34689999999999988877766
Q ss_pred c-----CccEEEEcccccCch-------------------------------hhccChHHHHHHHHHHHHHHHHHHHh--
Q 042406 153 V-----AFTHVMHLAAQAGVR-------------------------------YAMQNPNSYVESNIAGFVNLLETCKS-- 194 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~~-------------------------------~~~~~~~~~~~~N~~g~~~ll~a~~~-- 194 (424)
. +.|.|+-|||++..+ .+.++-...|+.|+.|...++.....
T Consensus 83 i~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll 162 (341)
T KOG1478|consen 83 IKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLL 162 (341)
T ss_pred HHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHh
Confidence 5 579999999986431 01122235799999998877665432
Q ss_pred -cCCCCeEEEecCCcccCCCCCCCCC-CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 042406 195 -SDPQPAIVWASSSSVYGVNKKVPFS-EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGP 264 (424)
Q Consensus 195 -~~~~~~~v~~SS~~vyg~~~~~~~~-e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~ 264 (424)
++..+.+|++||-..=- ..++ |+-.......+|..||.+.+.+-....+.. |+.-.++.||.....
T Consensus 163 ~~~~~~~lvwtSS~~a~k----k~lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt~ 233 (341)
T KOG1478|consen 163 CHSDNPQLVWTSSRMARK----KNLSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTTN 233 (341)
T ss_pred hcCCCCeEEEEeeccccc----ccCCHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeecc
Confidence 23234899999954411 1111 111122455789999999998877776543 677788888876543
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=101.22 Aligned_cols=223 Identities=15% Similarity=0.054 Sum_probs=152.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
...++.|++||.|.++.+.....|+.|.++.|+..+. . .......+.++++|.-...-........ ..++
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~------~--l~sw~~~vswh~gnsfssn~~k~~l~g~--t~v~ 122 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQ------T--LSSWPTYVSWHRGNSFSSNPNKLKLSGP--TFVY 122 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcc------h--hhCCCcccchhhccccccCcchhhhcCC--cccH
Confidence 3579999999999999999999999999999965421 1 1112346777888877655555555544 7788
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
-+++-.+ ....+..+|-....+.++++.+.|++ +|+|+|. .-||.. +..+ ..|-.+|.++|
T Consensus 123 e~~ggfg------n~~~m~~ing~ani~a~kaa~~~gv~-~fvyISa-~d~~~~----------~~i~-rGY~~gKR~AE 183 (283)
T KOG4288|consen 123 EMMGGFG------NIILMDRINGTANINAVKAAAKAGVP-RFVYISA-HDFGLP----------PLIP-RGYIEGKREAE 183 (283)
T ss_pred HHhcCcc------chHHHHHhccHhhHHHHHHHHHcCCc-eEEEEEh-hhcCCC----------Cccc-hhhhccchHHH
Confidence 7777533 44567788888888899999999986 9999995 333321 1122 47889999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCC-----cHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHh
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDM-----AYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGL 314 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 314 (424)
.-+.. .++.+-.++|||.+||...-.+. ....-+..+.+...-++-..+--+......+.++++|.+.+.++
T Consensus 184 ~Ell~---~~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai 260 (283)
T KOG4288|consen 184 AELLK---KFRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAI 260 (283)
T ss_pred HHHHH---hcCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhc
Confidence 75554 34688899999999997432221 11222333333332111111124577888999999999999999
Q ss_pred hhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHH
Q 042406 315 DTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEK 355 (424)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~ 355 (424)
+++. |. ..+++.|+.++..+
T Consensus 261 ~dp~-----------------f~----Gvv~i~eI~~~a~k 280 (283)
T KOG4288|consen 261 EDPD-----------------FK----GVVTIEEIKKAAHK 280 (283)
T ss_pred cCCC-----------------cC----ceeeHHHHHHHHHH
Confidence 9876 32 24777777766544
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.6e-11 Score=105.54 Aligned_cols=164 Identities=19% Similarity=0.141 Sum_probs=110.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEE--------EccCCCHHHHHHH
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVI--------DADINDKSLLDKI 149 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~--------~~Dl~d~~~v~~~ 149 (424)
.++.+||||++.+||..++..+.+++.+.....++... . ..+++.+. .+|++....+.+.
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~---------a---~~~~L~v~~gd~~v~~~g~~~e~~~l~al 72 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLL---------A---ELEGLKVAYGDDFVHVVGDITEEQLLGAL 72 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccc---------c---cccceEEEecCCcceechHHHHHHHHHHH
Confidence 35679999999999999999999998654443332111 1 12233333 3444444433333
Q ss_pred hhcc-----CccEEEEcccccCchh--h--ccC---hHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCC
Q 042406 150 FNVV-----AFTHVMHLAAQAGVRY--A--MQN---PNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVN 213 (424)
Q Consensus 150 ~~~~-----~~d~vi~~Ag~~~~~~--~--~~~---~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~ 213 (424)
++.. +-|+||||||....-. . ..| ...++++|+.....|...+ ++..+.+-+|++||.+..-
T Consensus 73 ~e~~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~-- 150 (253)
T KOG1204|consen 73 REAPRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR-- 150 (253)
T ss_pred HhhhhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc--
Confidence 3322 5799999999865421 1 122 3569999999877665544 3443345799999966542
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH-h-CCcEEEEEeccccCCC
Q 042406 214 KKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI-Y-GLSITGLRFFTVYGPW 265 (424)
Q Consensus 214 ~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~-~i~~~~vrp~~v~G~~ 265 (424)
+...+..||.+|++-+.+++.++.+ . ++++..++||.|-.+-
T Consensus 151 ----------p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~m 194 (253)
T KOG1204|consen 151 ----------PFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQM 194 (253)
T ss_pred ----------cccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchh
Confidence 2256789999999999999998754 3 8999999999987653
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.4e-09 Score=91.94 Aligned_cols=229 Identities=12% Similarity=0.088 Sum_probs=145.1
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.++||++||+|-. ..|+..|++.|.++|+++......+ +......+...+ ...-.++.||+++.+++.++|+.+
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~---~~s~~v~~cDV~~d~~i~~~f~~i 78 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEE---LGSDLVLPCDVTNDESIDALFATI 78 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhh---ccCCeEEecCCCCHHHHHHHHHHH
Confidence 4789999999964 5899999999999999988887644 222222222221 123468999999999999999877
Q ss_pred -----CccEEEEcccccCchhhc--------cChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRYAM--------QNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~~~--------~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|.|+|+.|...-.... +.....+++.......++++++.... +..+|-+|= +|...
T Consensus 79 ~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtY---lgs~r----- 150 (259)
T COG0623 79 KKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTY---LGSER----- 150 (259)
T ss_pred HHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEe---cccee-----
Confidence 689999999986532211 12233555555556666776665321 225554442 22110
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.-+.-+.-+..|++.|.-++-++... |+|++.|.-|.|=.--...=..+..++.......|+
T Consensus 151 ----~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl----------- 215 (259)
T COG0623 151 ----VVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPL----------- 215 (259)
T ss_pred ----ecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCCc-----------
Confidence 11233678999999999999988665 789998887765321111000122333333332222
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+-.+.++||....+.++...... +.|++.++.+|-
T Consensus 216 -~r~vt~eeVG~tA~fLlSdLssg----------iTGei~yVD~G~ 250 (259)
T COG0623 216 -RRNVTIEEVGNTAAFLLSDLSSG----------ITGEIIYVDSGY 250 (259)
T ss_pred -cCCCCHHHhhhhHHHHhcchhcc----------cccceEEEcCCc
Confidence 22566899999988888766543 455888887764
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=97.51 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=120.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+.+|.++|.||||-.|+.+.+++++.+- +|+++.|.+. ........+.....|....++....+++.
T Consensus 15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~----------~d~at~k~v~q~~vDf~Kl~~~a~~~qg~ 84 (238)
T KOG4039|consen 15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRREL----------PDPATDKVVAQVEVDFSKLSQLATNEQGP 84 (238)
T ss_pred hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccC----------CCccccceeeeEEechHHHHHHHhhhcCC
Confidence 46788899999999999999999999983 8999988431 11113356677778887777777777755
Q ss_pred CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 042406 154 AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAA 233 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~ 233 (424)
|+.|++-|..... ...+..+.+...-...++++|++.|++ +|+.+||.+.-- ...-.|-.
T Consensus 85 --dV~FcaLgTTRgk---aGadgfykvDhDyvl~~A~~AKe~Gck-~fvLvSS~GAd~--------------sSrFlY~k 144 (238)
T KOG4039|consen 85 --DVLFCALGTTRGK---AGADGFYKVDHDYVLQLAQAAKEKGCK-TFVLVSSAGADP--------------SSRFLYMK 144 (238)
T ss_pred --ceEEEeecccccc---cccCceEeechHHHHHHHHHHHhCCCe-EEEEEeccCCCc--------------ccceeeee
Confidence 9999998865432 224556677777788899999999987 999999977621 33456889
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWG 266 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~ 266 (424)
.|-..|.-+.++.-+ ++.|+|||.+.|...
T Consensus 145 ~KGEvE~~v~eL~F~---~~~i~RPG~ll~~R~ 174 (238)
T KOG4039|consen 145 MKGEVERDVIELDFK---HIIILRPGPLLGERT 174 (238)
T ss_pred ccchhhhhhhhcccc---EEEEecCcceecccc
Confidence 999999988887422 689999999999643
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.1e-09 Score=98.89 Aligned_cols=175 Identities=16% Similarity=0.042 Sum_probs=109.0
Q ss_pred CCCCeEEEEcCCChhHHH--HHHHHHhCCCeEEEEeCCCCchhh-----------hHHHHHhhhhccCCeEEEEccCCCH
Q 042406 77 TRGLTVLVTGAAGFVGSH--VSLALKKRGDGVLGLDNFNNYYET-----------SLKKARKGLLERAGVFVIDADINDK 143 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~--l~~~L~~~g~~V~~~~r~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~Dl~d~ 143 (424)
..+|++|||||+++||.+ +++.| ++|++|+++++..+.... ...+.. . .....+..+.+|+++.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a-~-~~G~~a~~i~~DVss~ 115 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFA-K-AAGLYAKSINGDAFSD 115 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHH-H-hcCCceEEEEcCCCCH
Confidence 457899999999999999 89999 999999999864322111 011111 1 1123467889999999
Q ss_pred HHHHHHhhcc-----CccEEEEcccccCchh------------------h------------------ccChHHHHHHHH
Q 042406 144 SLLDKIFNVV-----AFTHVMHLAAQAGVRY------------------A------------------MQNPNSYVESNI 182 (424)
Q Consensus 144 ~~v~~~~~~~-----~~d~vi~~Ag~~~~~~------------------~------------------~~~~~~~~~~N~ 182 (424)
+++.++++.+ ++|+||||+|...-.. . ..+.+...-+.+
T Consensus 116 E~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~v 195 (398)
T PRK13656 116 EIKQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKV 195 (398)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHh
Confidence 9998888765 6899999999752110 0 000011233455
Q ss_pred HHHHHHH---HHHHhcC---CCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcE
Q 042406 183 AGFVNLL---ETCKSSD---PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSI 253 (424)
Q Consensus 183 ~g~~~ll---~a~~~~~---~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~ 253 (424)
+|..... ++....+ .+.++|-+|. +|.... .+......-|.+|.+.|..++.++.+. |+++
T Consensus 196 Mggedw~~Wi~al~~a~lla~g~~~va~TY---~G~~~t-------~p~Y~~g~mG~AKa~LE~~~r~La~~L~~~gira 265 (398)
T PRK13656 196 MGGEDWELWIDALDEAGVLAEGAKTVAYSY---IGPELT-------HPIYWDGTIGKAKKDLDRTALALNEKLAAKGGDA 265 (398)
T ss_pred hccchHHHHHHHHHhcccccCCcEEEEEec---CCccee-------ecccCCchHHHHHHHHHHHHHHHHHHhhhcCCEE
Confidence 5542221 2222221 1225666654 222111 111122456899999999999998765 7899
Q ss_pred EEEEeccccCC
Q 042406 254 TGLRFFTVYGP 264 (424)
Q Consensus 254 ~~vrp~~v~G~ 264 (424)
.++-++.+...
T Consensus 266 n~i~~g~~~T~ 276 (398)
T PRK13656 266 YVSVLKAVVTQ 276 (398)
T ss_pred EEEecCcccch
Confidence 99988887654
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=103.65 Aligned_cols=178 Identities=19% Similarity=0.146 Sum_probs=123.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
..++++|.|+|++|.||..++..|+.++ .+++++|+.. .......... ... .....+.+|+.++.+.+++.
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~--~~g~a~Dl~~---~~~--~~~v~~~td~~~~~~~l~ga 77 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG--APGVAADLSH---IDT--PAKVTGYADGELWEKALRGA 77 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC--Ccccccchhh---cCc--CceEEEecCCCchHHHhCCC
Confidence 4567899999999999999999999665 6899999821 1110001110 011 23345666666667788877
Q ss_pred CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC--CCCCCCCCCCCCChH
Q 042406 154 AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKV--PFSEKDRTDQPASLY 231 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~--~~~e~~~~~~~~~~Y 231 (424)
|+||++||.... ...+....+..|+..+.+++++++++++. ++|+++|-.+-....-. ...+.. ..+|...|
T Consensus 78 --DvVVitaG~~~~--~~~tR~dll~~N~~i~~~i~~~i~~~~~~-~iviv~SNPvdv~~~~~~~~~~~~s-g~p~~~vi 151 (321)
T PTZ00325 78 --DLVLICAGVPRK--PGMTRDDLFNTNAPIVRDLVAAVASSAPK-AIVGIVSNPVNSTVPIAAETLKKAG-VYDPRKLF 151 (321)
T ss_pred --CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecCcHHHHHHHHHhhhhhcc-CCChhhee
Confidence 999999997432 12345788999999999999999999987 89999985553211000 001111 22556678
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 232 AATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 232 ~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
|.+-+..-++-..+++..++....|+ ++|+|..+.
T Consensus 152 G~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd 186 (321)
T PTZ00325 152 GVTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSG 186 (321)
T ss_pred echhHHHHHHHHHHHHHhCcChhheE-EEEEeecCC
Confidence 87767777777778888899989998 889998665
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=93.03 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=76.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
|+++||||+|++|. +++.|+++|++|++++|+.+...... ........+.++.+|++|.+++.+++++. +
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~----~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~ 75 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVK----RESTTPESITPLPLDYHDDDALKLAIKSTIEKNGP 75 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHH----HHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 67999999987765 99999999999999998654322211 11112346889999999999999888765 5
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCC---CeEEEecC
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ---PAIVWASS 206 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~---~~~v~~SS 206 (424)
+|++|+.+= +.++.++..+|++.++. .+|+++=.
T Consensus 76 id~lv~~vh------------------~~~~~~~~~~~~~~gv~~~~~~~~h~~g 112 (177)
T PRK08309 76 FDLAVAWIH------------------SSAKDALSVVCRELDGSSETYRLFHVLG 112 (177)
T ss_pred CeEEEEecc------------------ccchhhHHHHHHHHccCCCCceEEEEeC
Confidence 688887642 23578899999998863 15777654
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.96 E-value=5.1e-09 Score=99.52 Aligned_cols=176 Identities=18% Similarity=0.111 Sum_probs=119.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
..++|.|+|++|.||..++..|+.++ .+++++|++... .... + +.+........++.+.+++.+.+++.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a~-----D-l~~~~~~~~i~~~~~~~d~~~~l~~a-- 87 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVAA-----D-VSHINTPAQVRGFLGDDQLGDALKGA-- 87 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeEc-----h-hhhCCcCceEEEEeCCCCHHHHcCCC--
Confidence 44689999999999999999999776 489999986511 1000 0 00011112233544445577888887
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC--CCCCCCCCCCCCCCCCChHHH
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV--NKKVPFSEKDRTDQPASLYAA 233 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~--~~~~~~~e~~~~~~~~~~Y~~ 233 (424)
|+|||+||....+ ..+.++.+..|...+.++++.++++++. .+|+++|--+=+. ........ ....+|...||.
T Consensus 88 DiVVitAG~~~~~--g~~R~dll~~N~~i~~~i~~~i~~~~p~-aivivvSNPvD~~~~i~t~~~~~-~s~~p~~~viG~ 163 (323)
T PLN00106 88 DLVIIPAGVPRKP--GMTRDDLFNINAGIVKTLCEAVAKHCPN-ALVNIISNPVNSTVPIAAEVLKK-AGVYDPKKLFGV 163 (323)
T ss_pred CEEEEeCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHH-cCCCCcceEEEE
Confidence 9999999985432 2456789999999999999999999976 6777776322100 00000001 112256678999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
+++..+++-..+++..|+....|+ +.|+|..+.
T Consensus 164 ~~LDs~Rl~~~lA~~lgv~~~~V~-~~ViGeHg~ 196 (323)
T PLN00106 164 TTLDVVRANTFVAEKKGLDPADVD-VPVVGGHAG 196 (323)
T ss_pred ecchHHHHHHHHHHHhCCChhheE-EEEEEeCCC
Confidence 999999999999999999988885 667776543
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.1e-08 Score=94.51 Aligned_cols=98 Identities=24% Similarity=0.222 Sum_probs=78.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+|+|||.|+ |+||+.++..|+++| .+|++.+|+.+.... .......+++..++|+.|.+++.+++++. |+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~------i~~~~~~~v~~~~vD~~d~~al~~li~~~--d~ 71 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCAR------IAELIGGKVEALQVDAADVDALVALIKDF--DL 71 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHH------HHhhccccceeEEecccChHHHHHHHhcC--CE
Confidence 578999999 999999999999999 899999997543222 22223348999999999999999999987 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|||++.... ..+++++|.++++ ++|=+|
T Consensus 72 VIn~~p~~~------------------~~~i~ka~i~~gv--~yvDts 99 (389)
T COG1748 72 VINAAPPFV------------------DLTILKACIKTGV--DYVDTS 99 (389)
T ss_pred EEEeCCchh------------------hHHHHHHHHHhCC--CEEEcc
Confidence 999986532 2367888888886 466554
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-08 Score=90.85 Aligned_cols=85 Identities=18% Similarity=0.230 Sum_probs=61.4
Q ss_pred CCCCeEEEEcCC----------------ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccC
Q 042406 77 TRGLTVLVTGAA----------------GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140 (424)
Q Consensus 77 ~~~~~vlItGg~----------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl 140 (424)
+.||+||||+|. ||+|.+|+++|+++|++|+++++....... .......+..+.+|.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~-------~~~~~~~~~~V~s~~ 73 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN-------DINNQLELHPFEGII 73 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc-------ccCCceeEEEEecHH
Confidence 368999999986 999999999999999999999874321100 000122344566644
Q ss_pred CCHHHHHHHhhccCccEEEEcccccCch
Q 042406 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVR 168 (424)
Q Consensus 141 ~d~~~v~~~~~~~~~d~vi~~Ag~~~~~ 168 (424)
...+.+.+++...++|+|||+|++.+..
T Consensus 74 d~~~~l~~~~~~~~~D~VIH~AAvsD~~ 101 (229)
T PRK09620 74 DLQDKMKSIITHEKVDAVIMAAAGSDWV 101 (229)
T ss_pred HHHHHHHHHhcccCCCEEEECcccccee
Confidence 4456888888766789999999996643
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-08 Score=70.92 Aligned_cols=60 Identities=32% Similarity=0.419 Sum_probs=40.5
Q ss_pred HHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 352 LLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 352 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
.+++++|.++++.+.+ .+++|...++.|.+|++++|||+|+++|+++|+++.+|++++-.
T Consensus 1 A~e~vtG~~i~~~~~~-rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 1 AFEKVTGKKIPVEYAP-RRPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp HHHHHHTS---EEEE----TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHCCCCCceECC-CCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCcC
Confidence 3678899999988776 57999999999999999999999999999999999999988643
|
... |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.3e-07 Score=86.91 Aligned_cols=174 Identities=13% Similarity=0.096 Sum_probs=105.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-------CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG-------DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
.+|+||||+|+||.+++..|+..+ .+|+++|++.+.... .....+.. . .......|+....++.+.+++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~--~g~~~Dl~-d-~~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKAL--EGVVMELQ-D-CAFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccc--cceeeehh-h-ccccccCCceecCCHHHHhCC
Confidence 369999999999999999999854 589999995431000 00000000 0 000112344445667788887
Q ss_pred cCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc---ccCCCCCCCCCCCCCCCCCC
Q 042406 153 VAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSS---VYGVNKKVPFSEKDRTDQPA 228 (424)
Q Consensus 153 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~---vyg~~~~~~~~e~~~~~~~~ 228 (424)
+ |+|||+||.... ...+....+..|+.-...+.+...++. ....+|.+|... .|- ..+.....++.
T Consensus 79 a--DiVI~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~------~~k~~~~~~~~ 148 (325)
T cd01336 79 V--DVAILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALI------LLKYAPSIPKE 148 (325)
T ss_pred C--CEEEEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHH------HHHHcCCCCHH
Confidence 7 999999998543 234568899999999999999888884 454677666411 000 00000000111
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 229 SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
..=..+.+..-++-..+++..++....|+-..|+|..+.
T Consensus 149 ~ig~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~ 187 (325)
T cd01336 149 NFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS 187 (325)
T ss_pred HEEeeehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC
Confidence 111123334445555566667888888888889997665
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.5e-07 Score=85.47 Aligned_cols=187 Identities=14% Similarity=0.122 Sum_probs=122.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEeCCCCc--hhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHH
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD-------GVLGLDNFNNY--YETSLKKARKGL-LERAGVFVIDADINDKSLLDKI 149 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~ 149 (424)
++|.|+|++|.||..++..|+.+|. +++++|+..+. +........... ....++.+. -.+ .+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~---~~~----~~~ 75 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT---DDP----NVA 75 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe---cCc----HHH
Confidence 5799999999999999999998874 79999985432 222111111110 000122221 122 455
Q ss_pred hhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCc---ccCCCCCCCCCCCCCCC
Q 042406 150 FNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSS---VYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 150 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~---vyg~~~~~~~~e~~~~~ 225 (424)
+++. |+||.+||.... ...+..+.+..|..-...+.+...+++. ...+|.+|... .|-.. ......
T Consensus 76 ~~da--DivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~------k~sg~~ 145 (322)
T cd01338 76 FKDA--DWALLVGAKPRG--PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAM------KNAPDI 145 (322)
T ss_pred hCCC--CEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHH------HHcCCC
Confidence 6666 999999997432 2345678899999999999999998884 55677776411 11000 000012
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCce
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRI 285 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 285 (424)
++...||.+++..+++...+++.+|++...+|..+|||+.+. ..++.+-.....|.++
T Consensus 146 p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~--s~vp~~S~~~v~g~pl 203 (322)
T cd01338 146 PPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP--TQYPDFTNATIGGKPA 203 (322)
T ss_pred ChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc--cEEEehhhcEECCEeH
Confidence 455789999999999999999999999999999999999754 2333333333444443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.1e-07 Score=82.70 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=49.0
Q ss_pred EEE-cCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC--HHHHHHHhhccCccEEE
Q 042406 83 LVT-GAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND--KSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 83 lIt-Gg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~v~~~~~~~~~d~vi 159 (424)
.|| .+||++|.+|+++|+++|++|++++|.... ......++.++.++..+ .+.+.+.+.+ +|+||
T Consensus 19 ~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~----------~~~~~~~v~~i~v~s~~~m~~~l~~~~~~--~DivI 86 (229)
T PRK06732 19 GITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAV----------KPEPHPNLSIIEIENVDDLLETLEPLVKD--HDVLI 86 (229)
T ss_pred eecCccchHHHHHHHHHHHhCCCEEEEEECcccc----------cCCCCCCeEEEEEecHHHHHHHHHHHhcC--CCEEE
Confidence 444 457889999999999999999999874321 00012356666654332 2455556654 49999
Q ss_pred EcccccC
Q 042406 160 HLAAQAG 166 (424)
Q Consensus 160 ~~Ag~~~ 166 (424)
||||+..
T Consensus 87 h~AAvsd 93 (229)
T PRK06732 87 HSMAVSD 93 (229)
T ss_pred eCCccCC
Confidence 9999865
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.1e-07 Score=87.94 Aligned_cols=79 Identities=23% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCCCCCeEEEEcC----------------CChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEc
Q 042406 75 RSTRGLTVLVTGA----------------AGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138 (424)
Q Consensus 75 ~~~~~~~vlItGg----------------~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~ 138 (424)
..++||+|+|||| +|.+|.+++++|+++|++|++++++.+. . ...+ +..+
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~-~-----------~~~~--~~~~ 249 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNL-P-----------TPAG--VKRI 249 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccc-c-----------CCCC--cEEE
Confidence 4578999999999 8889999999999999999999985421 0 0112 3467
Q ss_pred cCCCHHHHHHHhhcc--CccEEEEcccccCc
Q 042406 139 DINDKSLLDKIFNVV--AFTHVMHLAAQAGV 167 (424)
Q Consensus 139 Dl~d~~~v~~~~~~~--~~d~vi~~Ag~~~~ 167 (424)
|+++.+++.+++.+. ++|++|||||+...
T Consensus 250 dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~ 280 (399)
T PRK05579 250 DVESAQEMLDAVLAALPQADIFIMAAAVADY 280 (399)
T ss_pred ccCCHHHHHHHHHHhcCCCCEEEEccccccc
Confidence 999998888777542 57999999998654
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.9e-07 Score=87.08 Aligned_cols=76 Identities=29% Similarity=0.315 Sum_probs=57.6
Q ss_pred EEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|.|| |++|+.+++.|++++. +|++.+|+.++...... .....++.++++|+.|.+++.+++++. |+||
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~-----~~~~~~~~~~~~d~~~~~~l~~~~~~~--dvVi 72 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAE-----KLLGDRVEAVQVDVNDPESLAELLRGC--DVVI 72 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT-------TTTTEEEEE--TTTHHHHHHHHTTS--SEEE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHh-----hccccceeEEEEecCCHHHHHHHHhcC--CEEE
Confidence 789999 9999999999999974 89999996543322211 114568999999999999999999988 9999
Q ss_pred Eccccc
Q 042406 160 HLAAQA 165 (424)
Q Consensus 160 ~~Ag~~ 165 (424)
||++..
T Consensus 73 n~~gp~ 78 (386)
T PF03435_consen 73 NCAGPF 78 (386)
T ss_dssp E-SSGG
T ss_pred ECCccc
Confidence 999864
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.2e-06 Score=79.08 Aligned_cols=172 Identities=17% Similarity=0.068 Sum_probs=100.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHh---CCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKK---RGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+|+|+||+|.||.+++..|+. .++.+++++|+... .. ...+.........+.+ .+.+++.+.+++. |
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-~g----~alDl~~~~~~~~i~~--~~~~d~~~~l~~~--D 71 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-PG----VAVDLSHIPTAVKIKG--FSGEDPTPALEGA--D 71 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-cc----eehhhhcCCCCceEEE--eCCCCHHHHcCCC--C
Confidence 6899999999999999998855 24688888986431 10 0001111111122232 2233445666766 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc----cCCCCCCCCCCCCCCCCCCChHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSV----YGVNKKVPFSEKDRTDQPASLYA 232 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~v----yg~~~~~~~~e~~~~~~~~~~Y~ 232 (424)
+||.++|..... ..+....+..|.....++++++++++.. ++|.+.|--+ |-.... -...... ++....|
T Consensus 72 iVIitaG~~~~~--~~~R~dll~~N~~i~~~ii~~i~~~~~~-~ivivvsNP~D~~t~~~~~~-~~~~sg~--p~~rvig 145 (312)
T PRK05086 72 VVLISAGVARKP--GMDRSDLFNVNAGIVKNLVEKVAKTCPK-ACIGIITNPVNTTVAIAAEV-LKKAGVY--DKNKLFG 145 (312)
T ss_pred EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccCchHHHHHHHHHH-HHHhcCC--CHHHEEe
Confidence 999999985422 2345788999999999999999999876 6666665111 000000 0000000 0111111
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 233 ATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 233 ~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
..-+..-++...+++..+++..-|+ +.|+|..+.
T Consensus 146 ~~~Lds~R~~~~ia~~l~~~~~~v~-~~v~GeHg~ 179 (312)
T PRK05086 146 VTTLDVIRSETFVAELKGKQPGEVE-VPVIGGHSG 179 (312)
T ss_pred eecHHHHHHHHHHHHHhCCChhheE-EEEEEecCC
Confidence 1113334455556666788888887 788997644
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-06 Score=76.80 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=63.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+++++++|+||+|++|+.+++.|++.|++|++++|+.++......... ...+.....+|..+.+.+.+++++.
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~-- 98 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLR----ARFGEGVGAVETSDDAARAAAIKGA-- 98 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH----hhcCCcEEEeeCCCHHHHHHHHhcC--
Confidence 3567899999999999999999999999999999997543332222111 1124556678999999999999877
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+||++...
T Consensus 99 diVi~at~~ 107 (194)
T cd01078 99 DVVFAAGAA 107 (194)
T ss_pred CEEEECCCC
Confidence 999997654
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-06 Score=77.55 Aligned_cols=94 Identities=14% Similarity=0.097 Sum_probs=71.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|+|+||||. |+.|++.|.++|++|++..++..... .....+...+..+..|.+++.+++++.++|+||
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~---------~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VI 70 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKH---------LYPIHQALTVHTGALDPQELREFLKRHSIDILV 70 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccc---------cccccCCceEEECCCCHHHHHHHHHhcCCCEEE
Confidence 68999999999 99999999999999999988553211 111222344557778888999999998899999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCC
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~ 198 (424)
+.+.... ..-+.|+.++|++.+..
T Consensus 71 DAtHPfA---------------~~is~~a~~a~~~~~ip 94 (256)
T TIGR00715 71 DATHPFA---------------AQITTNATAVCKELGIP 94 (256)
T ss_pred EcCCHHH---------------HHHHHHHHHHHHHhCCc
Confidence 9875421 12467889999999874
|
This enzyme was found to be a monomer by gel filtration. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=98.27 E-value=2e-05 Score=75.41 Aligned_cols=160 Identities=14% Similarity=0.094 Sum_probs=103.5
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-------eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---------
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD-------GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS--------- 144 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~--------- 144 (424)
+|.|+|++|.||..++..|+.+|. +++++|++.+. ...+....|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~---------------~~a~g~~~Dl~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAM---------------KVLEGVVMELMDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcc---------------cccceeEeehhcccchhcCceec
Confidence 489999999999999999998653 59999985431 01223334444443
Q ss_pred --HHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc-----ccCCCCCC
Q 042406 145 --LLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSS-----VYGVNKKV 216 (424)
Q Consensus 145 --~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~-----vyg~~~~~ 216 (424)
...+.++++ |+||++||.... ...+..+.+..|+.-.+.+.+...++. ....+|.+|... +.....+
T Consensus 66 ~~~~~~~~~~a--DiVVitAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg- 140 (324)
T TIGR01758 66 THDPAVAFTDV--DVAILVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAP- 140 (324)
T ss_pred cCChHHHhCCC--CEEEEcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcC-
Confidence 335677766 999999997432 123457899999999999999999984 655677766411 1100000
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 217 PFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 217 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
. + ++...=..+.+..-++-..+++..++....|+-+.|+|..+.
T Consensus 141 -----~-~-~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 184 (324)
T TIGR01758 141 -----S-I-PPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHSS 184 (324)
T ss_pred -----C-C-CcceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCCC
Confidence 0 0 111111123344445555667777998888988889997665
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-05 Score=66.60 Aligned_cols=115 Identities=18% Similarity=0.190 Sum_probs=78.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhcc-CCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLER-AGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+|.|+|++|.+|.+++..|+..+ .+++++|++.+...........-.... ....... .+++ .+++. |
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~~----~~~~a--D 71 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDYE----ALKDA--D 71 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSGG----GGTTE--S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---cccc----ccccc--c
Confidence 689999999999999999999997 489999997654333222222211111 1223332 3333 35555 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
+||-+||.... ...+..+.+..|..-...+.+...+.+....++.+|
T Consensus 72 ivvitag~~~~--~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 72 IVVITAGVPRK--PGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp EEEETTSTSSS--TTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred EEEEecccccc--ccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 99999997432 224467889999999999999999988765666665
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.26 E-value=9.8e-06 Score=77.46 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=103.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-------eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCH----------
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD-------GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDK---------- 143 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---------- 143 (424)
+|.|+||+|.||..++..|+..|. +++++|++... ...+....|+.|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~---------------~~~~g~~~Dl~d~~~~~~~~~~i 66 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM---------------KALEGVVMELQDCAFPLLKGVVI 66 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc---------------CccceeeeehhhhcccccCCcEE
Confidence 689999999999999999998762 59999985410 1122223333333
Q ss_pred -HHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc---ccCCCCCCCC
Q 042406 144 -SLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSS---VYGVNKKVPF 218 (424)
Q Consensus 144 -~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~---vyg~~~~~~~ 218 (424)
....+.++++ |+|||+||.... ...+..+.+..|..-.+.+.+..++.. ....+|.+|-.. .|-. .
T Consensus 67 ~~~~~~~~~~a--DiVVitAG~~~~--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~-----~ 137 (323)
T cd00704 67 TTDPEEAFKDV--DVAILVGAFPRK--PGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA-----L 137 (323)
T ss_pred ecChHHHhCCC--CEEEEeCCCCCC--cCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH-----H
Confidence 3456778877 999999997432 234567899999999999999999884 665666666311 0100 0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
.... ..++...-+.+.+..-++-..+++..++....|+-..|+|..+.
T Consensus 138 k~sg-~~p~~~vig~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 185 (323)
T cd00704 138 KNAP-NLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN 185 (323)
T ss_pred HHcC-CCCHHHEEEeeHHHHHHHHHHHHHHhCcCHHHceeeeEEecccC
Confidence 0000 00111122335555555666667777887777777778897654
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.23 E-value=3e-06 Score=76.93 Aligned_cols=70 Identities=11% Similarity=0.143 Sum_probs=50.4
Q ss_pred EEEc-CCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----Ccc
Q 042406 83 LVTG-AAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----AFT 156 (424)
Q Consensus 83 lItG-g~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~~d 156 (424)
.||. ++|+||+++++.|+++|++|+++++... .. . . ....+|+.+.+++.++++.+ ++|
T Consensus 18 ~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~--------l~-~----~--~~~~~Dv~d~~s~~~l~~~v~~~~g~iD 82 (227)
T TIGR02114 18 SITNHSTGHLGKIITETFLSAGHEVTLVTTKRA--------LK-P----E--PHPNLSIREIETTKDLLITLKELVQEHD 82 (227)
T ss_pred eecCCcccHHHHHHHHHHHHCCCEEEEEcChhh--------cc-c----c--cCCcceeecHHHHHHHHHHHHHHcCCCC
Confidence 4444 4889999999999999999999876210 00 0 0 01357999988887766543 579
Q ss_pred EEEEcccccCc
Q 042406 157 HVMHLAAQAGV 167 (424)
Q Consensus 157 ~vi~~Ag~~~~ 167 (424)
++|||||+...
T Consensus 83 iLVnnAgv~d~ 93 (227)
T TIGR02114 83 ILIHSMAVSDY 93 (227)
T ss_pred EEEECCEeccc
Confidence 99999998553
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=7e-06 Score=77.51 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEeCCCC---chhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNN---YYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~-V~~~~r~~~---~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
..++|+++|+|| |++|++++..|++.|.+ |++++|+.+ +.+....... .....+.+..+|+.+.+++.+.++
T Consensus 123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~---~~~~~~~~~~~d~~~~~~~~~~~~ 198 (289)
T PRK12548 123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIK---QEVPECIVNVYDLNDTEKLKAEIA 198 (289)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHh---hcCCCceeEEechhhhhHHHhhhc
Confidence 357899999999 89999999999999986 999999762 2222211111 112345667789998888888888
Q ss_pred ccCccEEEEcccc
Q 042406 152 VVAFTHVMHLAAQ 164 (424)
Q Consensus 152 ~~~~d~vi~~Ag~ 164 (424)
.. |+|||+-.+
T Consensus 199 ~~--DilINaTp~ 209 (289)
T PRK12548 199 SS--DILVNATLV 209 (289)
T ss_pred cC--CEEEEeCCC
Confidence 66 999998755
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.9e-06 Score=77.55 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=68.2
Q ss_pred eEEEEcCCChhHHHHHHHHHh----CCCeEEEEeCCCCchhhhHHHHHhhhhc--cCCeEEEEccCCCHHHHHHHhhccC
Q 042406 81 TVLVTGAAGFVGSHVSLALKK----RGDGVLGLDNFNNYYETSLKKARKGLLE--RAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~----~g~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.++|.||+||-|.++++++.+ .|...-+..|+..++.+.+.+.....-. ...+ .+.+|.+|++++.+.+++.
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~-i~i~D~~n~~Sl~emak~~- 84 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSV-ILIADSANEASLDEMAKQA- 84 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccce-EEEecCCCHHHHHHHHhhh-
Confidence 489999999999999999999 6889999999988887766655443211 2334 8899999999999999988
Q ss_pred ccEEEEccccc
Q 042406 155 FTHVMHLAAQA 165 (424)
Q Consensus 155 ~d~vi~~Ag~~ 165 (424)
.+|+||+|+.
T Consensus 85 -~vivN~vGPy 94 (423)
T KOG2733|consen 85 -RVIVNCVGPY 94 (423)
T ss_pred -EEEEeccccc
Confidence 9999999974
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00022 Score=68.16 Aligned_cols=118 Identities=18% Similarity=0.119 Sum_probs=82.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..+++|.|+|+ |.+|..++..|+.+|. ++.++|++.+.................++.... .+. +.+++.
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~---~~~----~~~~~a- 74 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA---GDY----SDCKDA- 74 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe---CCH----HHhCCC-
Confidence 45679999998 9999999999999986 799999977654443332222211112333332 232 346666
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+||-+||.... ...+..+.+..|..-...+++.+++.+....++.+|-
T Consensus 75 -divIitag~~~k--~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 75 -DLVVITAGAPQK--PGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred -CEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 999999997432 2245578899999999999999998887667777664
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.6e-05 Score=76.27 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=71.5
Q ss_pred CCCCCeEEEEcC---------------C-ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEcc
Q 042406 76 STRGLTVLVTGA---------------A-GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139 (424)
Q Consensus 76 ~~~~~~vlItGg---------------~-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D 139 (424)
.++||+|+|||| | |.+|..++++|.++|++|+++.+..... .... ...+|
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~------------~~~~--~~~~~ 247 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL------------TPPG--VKSIK 247 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC------------CCCC--cEEEE
Confidence 478999999999 3 4599999999999999999998743210 1112 24579
Q ss_pred CCCHHHH-HHHhhcc--CccEEEEcccccCchhhccCh------HHHHHHHHHHHHHHHHHHHhcC
Q 042406 140 INDKSLL-DKIFNVV--AFTHVMHLAAQAGVRYAMQNP------NSYVESNIAGFVNLLETCKSSD 196 (424)
Q Consensus 140 l~d~~~v-~~~~~~~--~~d~vi~~Ag~~~~~~~~~~~------~~~~~~N~~g~~~ll~a~~~~~ 196 (424)
+.+.+++ +++++.. +.|++||+||+.......... ...+..|+.-+..++...++..
T Consensus 248 v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 248 VSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred eccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 9998888 5555332 469999999997653221111 1123345555666677666543
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.3e-05 Score=73.79 Aligned_cols=74 Identities=22% Similarity=0.200 Sum_probs=52.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhC-C-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKR-G-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~-g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+++|+|+||||+|+||+.++++|+++ | .+++++.|+..+..... .+ +..+|+. .+.+++.+.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La----~e--------l~~~~i~---~l~~~l~~a 216 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ----AE--------LGGGKIL---SLEEALPEA 216 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH----HH--------hccccHH---hHHHHHccC
Confidence 578999999999999999999999865 5 58999988643322211 11 1113333 355777766
Q ss_pred CccEEEEcccccC
Q 042406 154 AFTHVMHLAAQAG 166 (424)
Q Consensus 154 ~~d~vi~~Ag~~~ 166 (424)
|+|||+++...
T Consensus 217 --DiVv~~ts~~~ 227 (340)
T PRK14982 217 --DIVVWVASMPK 227 (340)
T ss_pred --CEEEECCcCCc
Confidence 99999998743
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.87 E-value=6e-05 Score=65.89 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=47.5
Q ss_pred CCCCeEEEEcC----------------CChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccC
Q 042406 77 TRGLTVLVTGA----------------AGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140 (424)
Q Consensus 77 ~~~~~vlItGg----------------~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl 140 (424)
++||+||||+| ||-.|.+|+++++.+|++|+++....+ .....++..+. +
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~------------~~~p~~~~~i~--v 66 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSS------------LPPPPGVKVIR--V 66 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------------TTEEEEE---
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcc------------ccccccceEEE--e
Confidence 36788888876 689999999999999999999987421 00124666664 4
Q ss_pred CCHHHH----HHHhhccCccEEEEcccccCch
Q 042406 141 NDKSLL----DKIFNVVAFTHVMHLAAQAGVR 168 (424)
Q Consensus 141 ~d~~~v----~~~~~~~~~d~vi~~Ag~~~~~ 168 (424)
.+.+++ .+.+.+. |++||+|++.+..
T Consensus 67 ~sa~em~~~~~~~~~~~--Di~I~aAAVsDf~ 96 (185)
T PF04127_consen 67 ESAEEMLEAVKELLPSA--DIIIMAAAVSDFR 96 (185)
T ss_dssp SSHHHHHHHHHHHGGGG--SEEEE-SB--SEE
T ss_pred cchhhhhhhhccccCcc--eeEEEecchhhee
Confidence 454444 4444445 9999999997653
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00033 Score=66.82 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=98.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCC--CchhhhHHHHHhhhhcc-CCeEEEEccC-CCHHHHHHHhhcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFN--NYYETSLKKARKGLLER-AGVFVIDADI-NDKSLLDKIFNVV 153 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~--~~~~~~~~~~~~~~~~~-~~v~~~~~Dl-~d~~~v~~~~~~~ 153 (424)
|+|.|+|++|.+|..++..|+..|. +|+++||.. +................ .... ... .|. +.+++.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~---i~~~~d~----~~l~~a 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAE---IKISSDL----SDVAGS 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcE---EEECCCH----HHhCCC
Confidence 6899999999999999999999986 599999954 22222221111110011 1111 111 232 236766
Q ss_pred CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc---cCCCCCCCCCCCCCCCCCCCh
Q 042406 154 AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSV---YGVNKKVPFSEKDRTDQPASL 230 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~v---yg~~~~~~~~e~~~~~~~~~~ 230 (424)
|+||-++|.... ...+....+..|..-...+++.+.+.+...++|.+++..- |-......+ ++...
T Consensus 74 --DiViitag~p~~--~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~~g~-------~~~~v 142 (309)
T cd05294 74 --DIVIITAGVPRK--EGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESGF-------DKNRV 142 (309)
T ss_pred --CEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCC-------CHHHE
Confidence 999999987432 1223467889999999999998888776657787776211 100000000 11112
Q ss_pred HHH-HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 231 YAA-TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 231 Y~~-sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
.|. +-+...++...+++..++....|+ +.|+|..++
T Consensus 143 iG~gt~LDs~R~~~~la~~l~v~~~~v~-~~viGeHg~ 179 (309)
T cd05294 143 FGLGTHLDSLRFKVAIAKHFNVHISEVH-TRIIGEHGD 179 (309)
T ss_pred eeccchHHHHHHHHHHHHHHCcChHHeE-EEEEecCCC
Confidence 222 223334455555666677777776 666787654
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00049 Score=65.60 Aligned_cols=166 Identities=18% Similarity=0.130 Sum_probs=103.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhh-ccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLL-ERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
++|.|.|+ |.+|+.++..|+..| ++|+++||+.+.............. ......... .+.+ .+++. |
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~~----~l~~a--D 70 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDYS----DCKDA--D 70 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCHH----HhCCC--C
Confidence 47999996 999999999999999 6899999987654433322221111 112222222 2332 34555 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc-----ccCCCCCCCCCCCCCCCCCCChH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSS-----VYGVNKKVPFSEKDRTDQPASLY 231 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~-----vyg~~~~~~~~e~~~~~~~~~~Y 231 (424)
+||+++|.... ...+..+.+..|..-...+.+.+++++....++.+|-.. ++-... ..++....
T Consensus 71 IVIitag~~~~--~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~~~~~---------g~p~~~v~ 139 (306)
T cd05291 71 IVVITAGAPQK--PGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQKLS---------GLPKNRVI 139 (306)
T ss_pred EEEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHh---------CcCHHHEe
Confidence 99999997432 234557889999999999999999988776777777411 100000 00111112
Q ss_pred HH-HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 232 AA-TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 232 ~~-sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
|. +-+..-++...+++..+++...|+. .|+|..+.
T Consensus 140 g~gt~LDs~R~~~~la~~l~v~~~~v~~-~V~G~Hg~ 175 (306)
T cd05291 140 GTGTSLDTARLRRALAEKLNVDPRSVHA-YVLGEHGD 175 (306)
T ss_pred eccchHHHHHHHHHHHHHHCCCcccceE-EEEecCCC
Confidence 22 2233344555566667888888885 79997654
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00032 Score=66.58 Aligned_cols=167 Identities=18% Similarity=0.102 Sum_probs=104.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|+|.|+|++|.+|..++..|+.+| .+++++|++ ............ ........+. ..+++.+.+++. |+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~---~~~~~i~~~~--~~~~~y~~~~da--Di 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHI---NTPAKVTGYL--GPEELKKALKGA--DV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhC---CCcceEEEec--CCCchHHhcCCC--CE
Confidence 589999999999999999999888 489999986 211111111110 0111222110 112355667777 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc-------ccCCCCCCCCCCCCCCCCCCCh
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSS-------VYGVNKKVPFSEKDRTDQPASL 230 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~-------vyg~~~~~~~~e~~~~~~~~~~ 230 (424)
||-+||.... .-.+..+.+..|..-...+.+..++++....+|.+|-.. .|-..... ..++...
T Consensus 72 vvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s-------~~p~~rv 142 (310)
T cd01337 72 VVIPAGVPRK--PGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAG-------VYDPKRL 142 (310)
T ss_pred EEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhc-------CCCHHHE
Confidence 9999997432 234567899999999999999999988776777777532 11100000 0011112
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 042406 231 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPW 265 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~ 265 (424)
.|..-+..-++...+++..|+...-|+ ++|+|..
T Consensus 143 iG~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH 176 (310)
T cd01337 143 FGVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGH 176 (310)
T ss_pred EeeechHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence 222224445566666777788878888 8899987
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00051 Score=66.19 Aligned_cols=114 Identities=16% Similarity=0.222 Sum_probs=75.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCch-------------------hh-hHHHHHhhhhccCCeE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYY-------------------ET-SLKKARKGLLERAGVF 134 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~~-~~~~~~~~~~~~~~v~ 134 (424)
.++.++|+|.|+ |++|.++++.|++.|. +++++|++.-.. .. ...+...+....-.++
T Consensus 21 ~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 21 KIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred hhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 467788999997 8899999999999997 889999864110 00 0111111223344567
Q ss_pred EEEccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 135 VIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 135 ~~~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
.+..|++ .+.+++++++. |+||.+... .+ .-..+-++|.+.+. .+|+.+..+.+|.
T Consensus 100 ~~~~~~~-~~~~~~~~~~~--DlVid~~D~---------~~--------~r~~in~~~~~~~i--p~i~~~~~g~~G~ 155 (338)
T PRK12475 100 PVVTDVT-VEELEELVKEV--DLIIDATDN---------FD--------TRLLINDLSQKYNI--PWIYGGCVGSYGV 155 (338)
T ss_pred EEeccCC-HHHHHHHhcCC--CEEEEcCCC---------HH--------HHHHHHHHHHHcCC--CEEEEEecccEEE
Confidence 7777875 45677888866 999987631 11 11234467777776 4788877666653
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00074 Score=64.54 Aligned_cols=171 Identities=14% Similarity=0.100 Sum_probs=104.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEeCCCCc--hhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHH
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD-------GVLGLDNFNNY--YETSLKKARKGL-LERAGVFVIDADINDKSLLDKI 149 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~ 149 (424)
.+|.|+|++|.+|..++..|+..|. +++++|++... ............ ....++... ....+.
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-------~~~~~~ 76 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-------TDPEEA 76 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-------cChHHH
Confidence 4799999999999999999998883 79999986422 222211111111 011122211 122455
Q ss_pred hhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCC---cccCCCCCCCCCCCCCCC
Q 042406 150 FNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSS---SVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 150 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~---~vyg~~~~~~~~e~~~~~ 225 (424)
+++. |+||.+||.... .-.+..+.+..|..-...+.+.+.++.. ...++.+|-. ..|-.. +..+-.
T Consensus 77 ~~da--DvVVitAG~~~k--~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~------k~s~g~ 146 (323)
T TIGR01759 77 FKDV--DAALLVGAFPRK--PGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIAS------KNAPDI 146 (323)
T ss_pred hCCC--CEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHH------HHcCCC
Confidence 6666 999999997432 2345678999999999999999999876 5466666631 000000 000000
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
++....|.+.+..-++-..+++..++....|+-..|+|..+.
T Consensus 147 p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 188 (323)
T TIGR01759 147 PPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN 188 (323)
T ss_pred CHHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC
Confidence 111223334455555566667777888888888889997664
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00066 Score=65.43 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCch-------------------hhhH-HHHHhhhhccCCeE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYY-------------------ETSL-KKARKGLLERAGVF 134 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~-------------------~~~~-~~~~~~~~~~~~v~ 134 (424)
.+..++|+|.|+ |++|..++..|++.|. +++++|.+.-.. .... ...-.+....-.++
T Consensus 21 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~ 99 (339)
T PRK07688 21 KLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE 99 (339)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence 456778999998 9999999999999997 899999864110 0000 11111222334566
Q ss_pred EEEccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 135 VIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 135 ~~~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
.+..+++ .+.+.+++++. |+||.+... ...-..+-++|.+.+. .+|+.|+.+.||.
T Consensus 100 ~~~~~~~-~~~~~~~~~~~--DlVid~~Dn-----------------~~~r~~ln~~~~~~~i--P~i~~~~~g~~G~ 155 (339)
T PRK07688 100 AIVQDVT-AEELEELVTGV--DLIIDATDN-----------------FETRFIVNDAAQKYGI--PWIYGACVGSYGL 155 (339)
T ss_pred EEeccCC-HHHHHHHHcCC--CEEEEcCCC-----------------HHHHHHHHHHHHHhCC--CEEEEeeeeeeeE
Confidence 7777775 45567778866 999987531 1122346677888775 5888888777663
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0032 Score=59.85 Aligned_cols=166 Identities=13% Similarity=0.121 Sum_probs=103.8
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhh-hc-cCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGL-LE-RAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~-~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+|.|.|+ |.||..++..|+.+|. +++++|.+.+............. .. ...+..... | .+.+++. |
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~---~----y~~~~~a--D 70 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAG---D----YDDCADA--D 70 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEEC---C----HHHhCCC--C
Confidence 4789998 9999999999999884 79999997665444333222211 11 123444433 3 3456666 9
Q ss_pred EEEEcccccCchhhccC-hHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC-----cccCCCCCCCCCCCCCCCCCCCh
Q 042406 157 HVMHLAAQAGVRYAMQN-PNSYVESNIAGFVNLLETCKSSDPQPAIVWASSS-----SVYGVNKKVPFSEKDRTDQPASL 230 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~-~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~-----~vyg~~~~~~~~e~~~~~~~~~~ 230 (424)
+||-+||....+ .+.. ..+.+..|..-.+.+.+...+++....++.+|-. .+.....+ + ++.-.
T Consensus 71 ivvitaG~~~kp-g~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg--~-------p~~rv 140 (307)
T cd05290 71 IIVITAGPSIDP-GNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFD--Y-------PANKV 140 (307)
T ss_pred EEEECCCCCCCC-CCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhC--c-------Chhhe
Confidence 999999974321 1221 4788999999999999999999876566666641 01000000 0 11112
Q ss_pred HHH-HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 231 YAA-TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 231 Y~~-sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
.|. +-+..-++-..+++..++....|+.. |+|..+.
T Consensus 141 iG~gt~LDs~R~~~~la~~l~v~~~~V~~~-ViGeHGd 177 (307)
T cd05290 141 IGTGTMLDTARLRRIVADKYGVDPKNVTGY-VLGEHGS 177 (307)
T ss_pred ecccchHHHHHHHHHHHHHhCCCcccEEEE-EEecCCC
Confidence 222 33444555566667778888888865 8887654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00084 Score=66.48 Aligned_cols=170 Identities=14% Similarity=0.108 Sum_probs=109.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC-------CC--eEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHH
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKR-------GD--GVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDK 148 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~-------g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~ 148 (424)
--+|.|+|++|.||.+++-.|+.. |. +++++|++.+............. ....++.+.. .+ .+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~---~~----ye 172 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGI---DP----YE 172 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEec---CC----HH
Confidence 458999999999999999999988 64 78999998876655443333322 1112232222 23 34
Q ss_pred HhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHh-cCCCCeEEEecCCc-----ccCCCCCCCCCCCC
Q 042406 149 IFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKS-SDPQPAIVWASSSS-----VYGVNKKVPFSEKD 222 (424)
Q Consensus 149 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~-~~~~~~~v~~SS~~-----vyg~~~~~~~~e~~ 222 (424)
.+++. |+||-.||.... .-.+..+.++.|..-...+.+...+ ++....||.+|-.. ++-...+ +
T Consensus 173 ~~kda--DiVVitAG~prk--pG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg--~---- 242 (444)
T PLN00112 173 VFQDA--EWALLIGAKPRG--PGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAP--N---- 242 (444)
T ss_pred HhCcC--CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcC--C----
Confidence 56666 999999997432 2345678999999999999999998 57665777777411 1110000 0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
+ .....=..+.+..-++-..+++..++....|+-++|+|..+.
T Consensus 243 -~-~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd 285 (444)
T PLN00112 243 -I-PAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST 285 (444)
T ss_pred -C-CcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC
Confidence 0 111111233444455556667777998888888889997665
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0002 Score=75.98 Aligned_cols=171 Identities=17% Similarity=0.109 Sum_probs=110.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeE-EEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGV-LGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
...|.++|+||-|+.|..|+..|..||++- ++..|+--+..=.....+.-......|.+-..|++..+...+++++.
T Consensus 1766 hpeksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~k 1845 (2376)
T KOG1202|consen 1766 HPEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNK 1845 (2376)
T ss_pred CccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhh
Confidence 356889999999999999999999999864 44555432211111111211112334555567777777777777655
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcc-cCCCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSV-YGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~v-yg~~~~~~~~e~~~~~ 225 (424)
.+--|||+|++..... ...+.+..-+.-+.||.||=...++.- .-.-||.+||.+- -|.
T Consensus 1846 l~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN------------- 1912 (2376)
T KOG1202|consen 1846 LGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGN------------- 1912 (2376)
T ss_pred cccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCC-------------
Confidence 4678999998743221 223334555566778888877666542 2237888888543 221
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v 261 (424)
..++.||-+..+.|++++.-.. .|++-+.|-=|.|
T Consensus 1913 ~GQtNYG~aNS~MERiceqRr~-~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1913 AGQTNYGLANSAMERICEQRRH-EGFPGTAIQWGAI 1947 (2376)
T ss_pred CcccccchhhHHHHHHHHHhhh-cCCCcceeeeecc
Confidence 4568899999999998887544 4777666665544
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0027 Score=52.94 Aligned_cols=191 Identities=15% Similarity=0.085 Sum_probs=106.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-------HHHHHHHhh
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-------KSLLDKIFN 151 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-------~~~v~~~~~ 151 (424)
..+|+|-||-|-+|+.+++.+.++++-|.-+|..++... ..-..+..|-+= .+.+.+.+.
T Consensus 3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~A-------------d~sI~V~~~~swtEQe~~v~~~vg~sL~ 69 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA-------------DSSILVDGNKSWTEQEQSVLEQVGSSLQ 69 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc-------------cceEEecCCcchhHHHHHHHHHHHHhhc
Confidence 357999999999999999999999999988886443110 011223233221 123444555
Q ss_pred ccCccEEEEcccccCc-hh----hccChHHHHHHHHHHHHHHHHHHHh-cCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 152 VVAFTHVMHLAAQAGV-RY----AMQNPNSYVESNIAGFVNLLETCKS-SDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 152 ~~~~d~vi~~Ag~~~~-~~----~~~~~~~~~~~N~~g~~~ll~a~~~-~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
+.++|.||+.||-... +. ...+.+.++...+....--...+.. ...+.-+-.+......+. .
T Consensus 70 gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~g------------T 137 (236)
T KOG4022|consen 70 GEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGG------------T 137 (236)
T ss_pred ccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCC------------C
Confidence 5689999999985322 11 1222344444444432222222222 222212333333333332 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh-CCc----EEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY-GLS----ITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~-~i~----~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
+..-.|+..|.+..++..+++.+. |++ ...|-|-.+-.|-.+. .++ + -..-+|
T Consensus 138 PgMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRK---------------wMP------~-ADfssW 195 (236)
T KOG4022|consen 138 PGMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRK---------------WMP------N-ADFSSW 195 (236)
T ss_pred CcccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccccc---------------cCC------C-CcccCc
Confidence 445779999999999999997553 443 3445555454443221 111 1 123357
Q ss_pred ccHHHHHHHHHHHhhh
Q 042406 301 TYIDDIVKGCLAGLDT 316 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~ 316 (424)
....-+++.++.-...
T Consensus 196 TPL~fi~e~flkWtt~ 211 (236)
T KOG4022|consen 196 TPLSFISEHFLKWTTE 211 (236)
T ss_pred ccHHHHHHHHHHHhcc
Confidence 7778888877755443
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00033 Score=58.19 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
+.++++++|.|+ |+.|+.++..|++.|.+ |+++.|+.++........ ....+.++ ++. ++.+.+.+.
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~-----~~~~~~~~--~~~---~~~~~~~~~- 76 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEF-----GGVNIEAI--PLE---DLEEALQEA- 76 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH-----TGCSEEEE--EGG---GHCHHHHTE-
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc-----Ccccccee--eHH---HHHHHHhhC-
Confidence 578999999998 99999999999999986 999999655433322222 23344444 333 344666666
Q ss_pred ccEEEEccccc
Q 042406 155 FTHVMHLAAQA 165 (424)
Q Consensus 155 ~d~vi~~Ag~~ 165 (424)
|+||++.+..
T Consensus 77 -DivI~aT~~~ 86 (135)
T PF01488_consen 77 -DIVINATPSG 86 (135)
T ss_dssp -SEEEE-SSTT
T ss_pred -CeEEEecCCC
Confidence 9999998764
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0013 Score=59.69 Aligned_cols=74 Identities=23% Similarity=0.378 Sum_probs=58.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d~v 158 (424)
|+++|.|+ |-+|+.+++.|.++|+.|++++++.+...... .....+..+.+|-+|++.++++ +++. |++
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~-------~~~~~~~~v~gd~t~~~~L~~agi~~a--D~v 70 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFL-------ADELDTHVVIGDATDEDVLEEAGIDDA--DAV 70 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHh-------hhhcceEEEEecCCCHHHHHhcCCCcC--CEE
Confidence 67899997 99999999999999999999999654322211 1125788999999999999988 6655 999
Q ss_pred EEccc
Q 042406 159 MHLAA 163 (424)
Q Consensus 159 i~~Ag 163 (424)
+-..+
T Consensus 71 va~t~ 75 (225)
T COG0569 71 VAATG 75 (225)
T ss_pred EEeeC
Confidence 86654
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00064 Score=68.61 Aligned_cols=77 Identities=23% Similarity=0.251 Sum_probs=55.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+++|+|+|+|+++ +|..+++.|+++|++|++.++..... ... ....+...++.++.+|..+ +... ++|
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~---~~~-~~~~l~~~~~~~~~~~~~~-----~~~~--~~d 70 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQ---LKE-ALEELGELGIELVLGEYPE-----EFLE--GVD 70 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHH---HHH-HHHHHHhcCCEEEeCCcch-----hHhh--cCC
Confidence 5689999999866 99999999999999999999864211 111 1111223467788888876 2233 459
Q ss_pred EEEEccccc
Q 042406 157 HVMHLAAQA 165 (424)
Q Consensus 157 ~vi~~Ag~~ 165 (424)
+||+++|..
T Consensus 71 ~vv~~~g~~ 79 (450)
T PRK14106 71 LVVVSPGVP 79 (450)
T ss_pred EEEECCCCC
Confidence 999999863
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0004 Score=64.60 Aligned_cols=78 Identities=13% Similarity=0.121 Sum_probs=58.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
...++|-||+||.|..++++|+.+|..-.+..|+..+........ +.++-.-++.+++.+++.+++. ++|
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~L--------G~~~~~~p~~~p~~~~~~~~~~--~VV 75 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASL--------GPEAAVFPLGVPAALEAMASRT--QVV 75 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhc--------CccccccCCCCHHHHHHHHhcc--eEE
Confidence 346899999999999999999999998888888654433222111 2222333455599999999988 999
Q ss_pred EEcccccC
Q 042406 159 MHLAAQAG 166 (424)
Q Consensus 159 i~~Ag~~~ 166 (424)
+||+|+..
T Consensus 76 lncvGPyt 83 (382)
T COG3268 76 LNCVGPYT 83 (382)
T ss_pred Eecccccc
Confidence 99999853
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.002 Score=60.63 Aligned_cols=168 Identities=17% Similarity=0.118 Sum_probs=100.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++|.|+|+ |+||+.++-.|+.++ .+++++|+..+..+...............-..+.+| .+ .+.+++. |+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~----y~~~~~a--Di 72 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GD----YEDLKGA--DI 72 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CC----hhhhcCC--CE
Confidence 57999999 999999999998886 489999997544333222221111111111222233 22 3456666 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC---CcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS---SSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS---~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
|+-.||...- .-.+..+.+..|..-...+.+...+.+....|+.+|- ..+|-......+ + .....-+.+
T Consensus 73 VvitAG~prK--pGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~~k~sg~-----p-~~rvig~gt 144 (313)
T COG0039 73 VVITAGVPRK--PGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAMKFSGF-----P-KNRVIGSGT 144 (313)
T ss_pred EEEeCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHHHHhcCC-----C-ccceecccc
Confidence 9999987432 2245578999999999999999998887645665554 111110000000 0 111122344
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCC
Q 042406 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGP 264 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i~~~~vrp~~v~G~ 264 (424)
.+..-++-..+++..++....++- +|.|.
T Consensus 145 ~LDsaR~~~~lae~~~v~~~~V~~-~ViGe 173 (313)
T COG0039 145 VLDSARFRTFLAEKLGVSPKDVHA-YVIGE 173 (313)
T ss_pred hHHHHHHHHHHHHHhCCChhHcee-eEecc
Confidence 555566666677777887777774 45554
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0048 Score=59.62 Aligned_cols=169 Identities=12% Similarity=0.137 Sum_probs=100.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++|.|+|+ |.||..++..|+..|. +++++|.+.+....................+.. + .|. +.+++. |+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~-~-~dy----~~~~da--Di 108 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILA-S-TDY----AVTAGS--DL 108 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEe-C-CCH----HHhCCC--CE
Confidence 69999996 9999999999998874 799999977654433322222111111222221 1 232 236666 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc---ccCCCCCCCCCCCCCCCCCCChHHH-
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSS---VYGVNKKVPFSEKDRTDQPASLYAA- 233 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~---vyg~~~~~~~~e~~~~~~~~~~Y~~- 233 (424)
||-+||.... ...+..+.+..|..-...+.+..++++....+|.+|-.. .|-......+ ++....|.
T Consensus 109 VVitAG~~~k--~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~~k~sg~-------p~~rviG~g 179 (350)
T PLN02602 109 CIVTAGARQI--PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWKLSGF-------PANRVIGSG 179 (350)
T ss_pred EEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHHhCC-------CHHHEEeec
Confidence 9999997432 123456889999999999999999888776777777411 0000000000 01111111
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
+-+..-++...+++..++...-|+.. |+|..+.
T Consensus 180 t~LDs~R~r~~lA~~l~v~~~~V~~~-ViGeHGd 212 (350)
T PLN02602 180 TNLDSSRFRFLIADHLDVNAQDVQAY-IVGEHGD 212 (350)
T ss_pred chHHHHHHHHHHHHHhCCCccceeee-EEecCCC
Confidence 11222244445566668888888865 6787553
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0032 Score=60.09 Aligned_cols=168 Identities=18% Similarity=0.170 Sum_probs=98.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|+|.|.|+ |.+|..++..|+.+| .+|.++|++.+....................... .|. +.+++. |+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~---~d~----~~l~~a--Di 70 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA---GDY----ADCKGA--DV 70 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee---CCH----HHhCCC--CE
Confidence 57999998 999999999999999 6899999977654322221211111112222222 233 236666 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc---cCCCCCCCCCCCCCCCCCCChHHH-
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSV---YGVNKKVPFSEKDRTDQPASLYAA- 233 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~v---yg~~~~~~~~e~~~~~~~~~~Y~~- 233 (424)
||.+++.... ...+.......|..-...+++.+.+.+....++.++...- |-... ... .++....|.
T Consensus 71 Viita~~~~~--~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~-----~sg--~p~~~viG~g 141 (308)
T cd05292 71 VVITAGANQK--PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYK-----LSG--LPPNRVIGSG 141 (308)
T ss_pred EEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHH-----HHC--cCHHHeeccc
Confidence 9999987432 1234567888899999999998888876646666653100 00000 000 011111221
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
+-+..-++-..+++..+++...|+ +.|+|..+.
T Consensus 142 t~LDs~R~~~~la~~~~v~~~~v~-~~viGeHg~ 174 (308)
T cd05292 142 TVLDTARFRYLLGEHLGVDPRSVH-AYIIGEHGD 174 (308)
T ss_pred chhhHHHHHHHHHHHhCCCcccee-ceeeccCCC
Confidence 122223444555666688888887 558887643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0039 Score=61.84 Aligned_cols=169 Identities=14% Similarity=0.075 Sum_probs=100.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC---CC----eEEEEeCC--CCchhhhHHHHHhhhhc-cCCeEEEEccCCCHHHHHH
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKR---GD----GVLGLDNF--NNYYETSLKKARKGLLE-RAGVFVIDADINDKSLLDK 148 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~---g~----~V~~~~r~--~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~v~~ 148 (424)
.-+|+||||+|.||.+|+-.+++- |. .++++|.. .+.+....-........ ...+.+.. .+ .+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~---~~----~e 195 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT---DL----DV 195 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE---CC----HH
Confidence 357999999999999999998873 42 36667762 33332222222211111 12333332 12 45
Q ss_pred HhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEecC-C-----cccCCCCCCCCCC
Q 042406 149 IFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP--QPAIVWASS-S-----SVYGVNKKVPFSE 220 (424)
Q Consensus 149 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~--~~~~v~~SS-~-----~vyg~~~~~~~~e 220 (424)
.|+++ |+||-+||.... .-.+..+.++.|..-...+.++..+... . +|+.+.| . .+.-...
T Consensus 196 a~~da--DvvIitag~prk--~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~-~VlVv~tNPvD~~t~i~~k~a------ 264 (452)
T cd05295 196 AFKDA--HVIVLLDDFLIK--EGEDLEGCIRSRVAICQLYGPLIEKNAKEDV-KVIVAGRTFLNLKTSILIKYA------ 264 (452)
T ss_pred HhCCC--CEEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEEeCCcHHHHHHHHHHHc------
Confidence 67777 999999997432 2335678999999999999999888776 4 4444443 1 1111000
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
+..++...-|.+.+..-++...+++..+++...|+-.+|.|..+.
T Consensus 265 --pgiP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~ 309 (452)
T cd05295 265 --PSIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG 309 (452)
T ss_pred --CCCCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC
Confidence 000112223333344445555667777999999988899997654
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0043 Score=59.18 Aligned_cols=169 Identities=14% Similarity=0.118 Sum_probs=100.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++|.|+|+ |.||..++..|+..| .+++++|++.+....................+... .|++ .+++. |+
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~dy~----~~~~a--di 74 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KDYS----VTANS--KV 74 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CCHH----HhCCC--CE
Confidence 57999996 999999999999887 47999998776443332222221100111122221 2333 35666 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc---cCCCCCCCCCCCCCCCCCCChHHH-
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSV---YGVNKKVPFSEKDRTDQPASLYAA- 233 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~v---yg~~~~~~~~e~~~~~~~~~~Y~~- 233 (424)
||-+||.... ...+..+.+..|..-.+.+.+.+.+.+....++.+|-..- |... ... -.++....|.
T Consensus 75 vvitaG~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~-----k~s--g~p~~~viG~g 145 (312)
T cd05293 75 VIVTAGARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAW-----KLS--GLPKHRVIGSG 145 (312)
T ss_pred EEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHH-----HHh--CCCHHHEEecC
Confidence 9999997432 2345578899999999999999999887767777774110 0000 000 0011112222
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
+-+...++-..+++..++....++. .|+|..+.
T Consensus 146 t~Ld~~R~~~~la~~l~v~~~~v~~-~v~GeHG~ 178 (312)
T cd05293 146 CNLDSARFRYLIAERLGVAPSSVHG-WIIGEHGD 178 (312)
T ss_pred chHHHHHHHHHHHHHhCCChhhEEE-EEeecCCC
Confidence 2223344555556666887777775 45787643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0025 Score=56.86 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=72.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhh--------------hH----HHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYET--------------SL----KKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~--------------~~----~~~~~~~~~~~~v~~~ 136 (424)
.+..++|+|.|. |++|.++++.|+..|. +++++|.+.-.... .+ ...-.+....-.++.+
T Consensus 18 kl~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 18 RLLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HhcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 456778999996 9999999999999996 89999886321100 00 0011112223345555
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
..++. .+.+.+.+++. |+||.+... . ..-..+-+.|++.+. .+|+.++.+.+|.
T Consensus 97 ~~~i~-~~~~~~~~~~~--D~Vi~~~d~---------~--------~~r~~l~~~~~~~~i--p~i~~~~~g~~G~ 150 (202)
T TIGR02356 97 KERVT-AENLELLINNV--DLVLDCTDN---------F--------ATRYLINDACVALGT--PLISAAVVGFGGQ 150 (202)
T ss_pred hhcCC-HHHHHHHHhCC--CEEEECCCC---------H--------HHHHHHHHHHHHcCC--CEEEEEeccCeEE
Confidence 55554 35677788866 999987632 1 112335567788775 5888887666653
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.013 Score=59.07 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=98.3
Q ss_pred CCCeEEEEcCC-ChhHHHHHHHHHhCCCeEEEEeCCCCchhh--hHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 78 RGLTVLVTGAA-GFVGSHVSLALKKRGDGVLGLDNFNNYYET--SLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 78 ~~~~vlItGg~-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+.++||||+ |.||..++..|+.-|+.|++..-+-+.... .+............+.++..+..++.+++.+++-+
T Consensus 395 ~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewIg 474 (866)
T COG4982 395 GDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWIG 474 (866)
T ss_pred ccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHhc
Confidence 56889999986 789999999999999999988643321111 11111222223456778888888887777776432
Q ss_pred ------------------CccEEEEcccccCch-hhccCh--HHHHHHHHHHHHHHHHHHHhcC----CCC--eEEEecC
Q 042406 154 ------------------AFTHVMHLAAQAGVR-YAMQNP--NSYVESNIAGFVNLLETCKSSD----PQP--AIVWASS 206 (424)
Q Consensus 154 ------------------~~d~vi~~Ag~~~~~-~~~~~~--~~~~~~N~~g~~~ll~a~~~~~----~~~--~~v~~SS 206 (424)
.||.+|-.|++.-.. ...-++ +..+++=+.....++-..+..+ +.. ++|.-.|
T Consensus 475 ~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPgS 554 (866)
T COG4982 475 DEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPGS 554 (866)
T ss_pred cccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecCC
Confidence 378899998874321 111222 3455555555555555444432 221 5665555
Q ss_pred Cc--ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh
Q 042406 207 SS--VYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY 249 (424)
Q Consensus 207 ~~--vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~ 249 (424)
.. -|| .-..|+-+|++.+.++..|..+.
T Consensus 555 PNrG~FG---------------gDGaYgEsK~aldav~~RW~sEs 584 (866)
T COG4982 555 PNRGMFG---------------GDGAYGESKLALDAVVNRWHSES 584 (866)
T ss_pred CCCCccC---------------CCcchhhHHHHHHHHHHHhhccc
Confidence 21 122 23679999999999999887553
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0016 Score=61.98 Aligned_cols=115 Identities=18% Similarity=0.100 Sum_probs=77.4
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|.|+|++|.||..++..|+.+|. +++++|++. ....... .. . ......+.... +.+++.+.+++. |+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a~D-L~-~--~~~~~~i~~~~--~~~~~~~~~~da--Div 71 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVAAD-LS-H--IPTAASVKGFS--GEEGLENALKGA--DVV 71 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEEch-hh-c--CCcCceEEEec--CCCchHHHcCCC--CEE
Confidence 489999999999999999999874 799999865 1111111 10 0 00112222101 112245677777 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|-+||.... ...+..+.+..|..-...+.+...+++....+|.+|-
T Consensus 72 vitaG~~~~--~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 72 VIPAGVPRK--PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred EEeCCCCCC--CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 999997432 2345678899999999999999998887767777775
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0037 Score=59.90 Aligned_cols=118 Identities=15% Similarity=0.129 Sum_probs=78.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCe-EEEEccCCCHHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGV-FVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
..++|.|+|| |.+|..++..|+..| .+|+++|++.+............ ....+. ..+.+ ..|. + .+++.
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~-~~d~---~-~l~~A-- 74 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILG-TNNY---E-DIKDS-- 74 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEe-CCCH---H-HhCCC--
Confidence 5678999997 999999999999999 68999999776543221111110 010111 11221 1233 3 55666
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+||.++|.... ...+..+.+..|..-...+++.+.+......+|++|-
T Consensus 75 DiVVitag~~~~--~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 75 DVVVITAGVQRK--EEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999987432 2234567888899888899999988876656777765
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0034 Score=52.03 Aligned_cols=110 Identities=23% Similarity=0.264 Sum_probs=71.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchh------------------hhHHHHHhhhhccCCeEEEEcc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYE------------------TSLKKARKGLLERAGVFVIDAD 139 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~------------------~~~~~~~~~~~~~~~v~~~~~D 139 (424)
.++|+|.|+ |.+|..+++.|+..|. +++++|...-... +.....-.+.....++..+..+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 468999997 9999999999999997 7888887542110 0111111122234567777777
Q ss_pred CCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 042406 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 140 l~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg 211 (424)
+ +.+...+.+++. |+||.+... ...-..+.+.|++.+. .+|+.++.+.+|
T Consensus 81 ~-~~~~~~~~~~~~--d~vi~~~d~-----------------~~~~~~l~~~~~~~~~--p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 I-DEENIEELLKDY--DIVIDCVDS-----------------LAARLLLNEICREYGI--PFIDAGVNGFYG 130 (135)
T ss_dssp C-SHHHHHHHHHTS--SEEEEESSS-----------------HHHHHHHHHHHHHTT---EEEEEEEETTEE
T ss_pred c-ccccccccccCC--CEEEEecCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeecCEE
Confidence 7 556678888766 999987532 1122346677888875 588877765554
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0033 Score=61.31 Aligned_cols=170 Identities=14% Similarity=0.094 Sum_probs=103.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-e----EEE----EeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHH
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-G----VLG----LDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDK 148 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-~----V~~----~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~ 148 (424)
.-+|.|+|++|.+|..++-.|+..|. . |.+ +|++.+............. ....++.+.. .+ .+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~---~~----y~ 116 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGI---DP----YE 116 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEec---CC----HH
Confidence 35799999999999999999998873 2 333 3666655444333222221 1111232222 23 34
Q ss_pred HhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc-----ccCCCCCCCCCCCC
Q 042406 149 IFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSS-----VYGVNKKVPFSEKD 222 (424)
Q Consensus 149 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~-----vyg~~~~~~~~e~~ 222 (424)
.+++. |+||-+||.... ...+..+.+..|..-.+.+.+...++. ...++|.+|-.. +.....+ +
T Consensus 117 ~~kda--DIVVitAG~prk--pg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~sg--~---- 186 (387)
T TIGR01757 117 VFEDA--DWALLIGAKPRG--PGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAP--N---- 186 (387)
T ss_pred HhCCC--CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHcC--C----
Confidence 56666 999999997432 234567899999999999999998854 554677666411 1110000 0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
+ +....=..+.+..-++-..+++..++....|+-++|+|..+.
T Consensus 187 -~-~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd 229 (387)
T TIGR01757 187 -I-PRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST 229 (387)
T ss_pred -C-cccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC
Confidence 0 111111234444455666667777888888888889997664
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0066 Score=57.94 Aligned_cols=170 Identities=14% Similarity=0.102 Sum_probs=96.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhh-ccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLL-ERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+|+|.|.|+ |.+|..++..|+..|. +|+++|++.+.............. ....... .. .+|. +.+++. |
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i-~~-~~d~----~~~~~a--D 72 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKI-TG-TNDY----EDIAGS--D 72 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEE-Ee-CCCH----HHHCCC--C
Confidence 478999999 9999999999999875 999999976654322211111111 1111111 11 1232 235666 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc-c--cCCCCCCCCCCCCCCCCCCChHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSS-V--YGVNKKVPFSEKDRTDQPASLYAA 233 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~-v--yg~~~~~~~~e~~~~~~~~~~Y~~ 233 (424)
+||.++|.... ...+..+.+.-|..-...+++.+.+......+|.+|-.. + |-......+ ++....|.
T Consensus 73 iVii~~~~p~~--~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~-------~~~~viG~ 143 (307)
T PRK06223 73 VVVITAGVPRK--PGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGF-------PKNRVIGM 143 (307)
T ss_pred EEEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCC-------CcccEEEe
Confidence 99999986431 123445677788888888988888877655677766411 0 000000000 11111121
Q ss_pred -HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 234 -TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 234 -sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
+-+..-++-..+++..++...-|+ ++|+|..+.
T Consensus 144 gt~lds~r~~~~la~~l~v~~~~v~-~~viGehg~ 177 (307)
T PRK06223 144 AGVLDSARFRTFIAEELNVSVKDVT-AFVLGGHGD 177 (307)
T ss_pred CCCcHHHHHHHHHHHHhCcChhhCc-ccEEcCCCC
Confidence 122223455556666677777776 556687543
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0039 Score=59.71 Aligned_cols=171 Identities=15% Similarity=0.105 Sum_probs=103.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEeCCCCc--hhhhHHHHHhhh-hccCCeEEEEccCCCHHHHH
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-------GVLGLDNFNNY--YETSLKKARKGL-LERAGVFVIDADINDKSLLD 147 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~--~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~ 147 (424)
+.++|.|+|++|.+|..++..|+..|. +++++|++.+. ............ ....++.+. . ...
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~------~~y 75 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-D------DPN 75 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-c------ChH
Confidence 345899999999999999999998763 79999985431 211111111110 001122221 1 224
Q ss_pred HHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc-----ccCCCCCCCCCCC
Q 042406 148 KIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSS-----VYGVNKKVPFSEK 221 (424)
Q Consensus 148 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~-----vyg~~~~~~~~e~ 221 (424)
+.+++. |+||-+||.... ...+..+.+..|..-.+.+.+...++. ....+|.+|... ++....
T Consensus 76 ~~~~da--DiVVitaG~~~k--~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s------- 144 (326)
T PRK05442 76 VAFKDA--DVALLVGARPRG--PGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNA------- 144 (326)
T ss_pred HHhCCC--CEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHc-------
Confidence 556666 999999997432 234567899999999999999998855 454677777410 110000
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
+-.++....|.+-+..-++-..+++..+++...|+...|+|..+.
T Consensus 145 -~g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~ 189 (326)
T PRK05442 145 -PDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA 189 (326)
T ss_pred -CCCCHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC
Confidence 000111223334444455556666777888888887778897654
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.002 Score=60.01 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=78.3
Q ss_pred EEEEcCCChhHHHHHHHHHhCC----CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 82 VLVTGAAGFVGSHVSLALKKRG----DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|.|+||+|.+|..++..|+..| .+|+++|++.+...........-........+. -.++.++.+++. |+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-----~~~d~~~~~~~a--Di 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-----ITDDPYEAFKDA--DV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-----ECCchHHHhCCC--CE
Confidence 4799999999999999999999 799999998765544333322211111111111 112245667777 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
||..++..... -.........|+.-...+++.+++......++.+|
T Consensus 74 Vv~t~~~~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 74 VIITAGVGRKP--GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred EEECCCCCCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 99999874322 22345678889999999999999888765777665
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0012 Score=64.65 Aligned_cols=104 Identities=15% Similarity=0.144 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~ 154 (424)
...|+|.|.||||++|..|++.|.++ +.+|+.+.+..+.... .. .........|+.+.+.++.. ++++
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~-i~--------~~~~~l~~~~~~~~~~~~~~~~~~~- 105 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQS-FG--------SVFPHLITQDLPNLVAVKDADFSDV- 105 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCC-ch--------hhCccccCccccceecCCHHHhcCC-
Confidence 46679999999999999999999999 5789998874321111 00 00111222344333333322 4555
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
|+||-+.+.. ....+++.+. .+ .++|-.|+..-+..
T Consensus 106 -DvVf~Alp~~------------------~s~~i~~~~~-~g--~~VIDlSs~fRl~~ 141 (381)
T PLN02968 106 -DAVFCCLPHG------------------TTQEIIKALP-KD--LKIVDLSADFRLRD 141 (381)
T ss_pred -CEEEEcCCHH------------------HHHHHHHHHh-CC--CEEEEcCchhccCC
Confidence 9999876531 3455666653 34 38999999776543
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0065 Score=57.71 Aligned_cols=114 Identities=17% Similarity=0.135 Sum_probs=77.2
Q ss_pred EEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 82 VLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|.|.|+ |.+|..++..|+..| .+++++|++.+...........-...........+ .| .+.+++. |+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~----~~~l~~a--DiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GD----YADAADA--DIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CC----HHHhCCC--CEEE
Confidence 468887 889999999999998 68999999776544333322221111112222221 22 2356666 9999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
.+||.... ...+....+..|+.-...+.+..++++....++.+|.
T Consensus 72 itag~p~~--~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 72 ITAGAPRK--PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred EcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 99997432 2335577888999999999999999887657776664
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0029 Score=68.91 Aligned_cols=78 Identities=19% Similarity=0.156 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC-Ce-------------EEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRG-DG-------------VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND 142 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g-~~-------------V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d 142 (424)
..+|+|+|.|+ |+||+..++.|++.+ .+ |.+.|++.+..... .. ..+++..+..|++|
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~l----a~---~~~~~~~v~lDv~D 638 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKET----VE---GIENAEAVQLDVSD 638 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHH----HH---hcCCCceEEeecCC
Confidence 35789999997 999999999998763 33 77777754322111 11 12367889999999
Q ss_pred HHHHHHHhhccCccEEEEcccc
Q 042406 143 KSLLDKIFNVVAFTHVMHLAAQ 164 (424)
Q Consensus 143 ~~~v~~~~~~~~~d~vi~~Ag~ 164 (424)
.+++.++++++ |+||++...
T Consensus 639 ~e~L~~~v~~~--DaVIsalP~ 658 (1042)
T PLN02819 639 SESLLKYVSQV--DVVISLLPA 658 (1042)
T ss_pred HHHHHHhhcCC--CEEEECCCc
Confidence 99999998876 999999754
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.016 Score=55.58 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHH-HHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKK-ARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~-~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.+.++|.|.|+ |.+|..++..++..|. +|+++|++++........ ............+.. .+|. +.+++.
T Consensus 4 ~~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~--~~d~----~~l~~a- 75 (321)
T PTZ00082 4 IKRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG--TNNY----EDIAGS- 75 (321)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE--CCCH----HHhCCC-
Confidence 34578999995 9999999999999995 899999987654221111 111111111222221 1233 345666
Q ss_pred ccEEEEcccccCchhhc----cChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 155 FTHVMHLAAQAGVRYAM----QNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~----~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+||.+||..... .+ -+..+.+..|..-...+++.+.+......++.+|-
T Consensus 76 -DiVI~tag~~~~~-~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 76 -DVVIVTAGLTKRP-GKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred -CEEEECCCCCCCC-CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999999874321 11 03456788898888889998888876546777775
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0078 Score=54.85 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=71.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhh----------h----HH-----HHHhhhhccCCeEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYET----------S----LK-----KARKGLLERAGVFV 135 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~----------~----~~-----~~~~~~~~~~~v~~ 135 (424)
.+.+.+|+|.|+ |++|.++++.|+..|. +++++|.+.-.... . .+ .........-.++.
T Consensus 24 ~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~ 102 (231)
T PRK08328 24 KLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIET 102 (231)
T ss_pred HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEE
Confidence 356678999997 9999999999999996 68888865421110 0 00 00111122334555
Q ss_pred EEccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 136 ~~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
+...+ +.+.+.+++++. |+||.+... .+ .-..+-++|++.+. .+|+.++.+.+|.
T Consensus 103 ~~~~~-~~~~~~~~l~~~--D~Vid~~d~---------~~--------~r~~l~~~~~~~~i--p~i~g~~~g~~G~ 157 (231)
T PRK08328 103 FVGRL-SEENIDEVLKGV--DVIVDCLDN---------FE--------TRYLLDDYAHKKGI--PLVHGAVEGTYGQ 157 (231)
T ss_pred EeccC-CHHHHHHHHhcC--CEEEECCCC---------HH--------HHHHHHHHHHHcCC--CEEEEeeccCEEE
Confidence 55555 445567778866 999987632 11 11234467788876 5888888777774
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0058 Score=55.64 Aligned_cols=113 Identities=15% Similarity=0.120 Sum_probs=71.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchh--------------h----hHHHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYE--------------T----SLKKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~--------------~----~~~~~~~~~~~~~~v~~~ 136 (424)
.+..++|+|.|+ |++|.++++.|+..|. +++++|.+.-... . ...+.-.+....-+++.+
T Consensus 18 ~L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 18 KLKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 356778999996 9999999999999996 6777765431110 0 001111112223456666
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg 211 (424)
..++ +.+.+.+++++. |+||.+... + ..-..+-++|.+.+. .+|+.+..+.+|
T Consensus 97 ~~~i-~~~~~~~~~~~~--DvVi~~~d~---------~--------~~r~~l~~~~~~~~i--p~i~~g~~g~~g 149 (228)
T cd00757 97 NERL-DAENAEELIAGY--DLVLDCTDN---------F--------ATRYLINDACVKLGK--PLVSGAVLGFEG 149 (228)
T ss_pred ccee-CHHHHHHHHhCC--CEEEEcCCC---------H--------HHHHHHHHHHHHcCC--CEEEEEeccCEE
Confidence 6666 346677788766 999988642 1 112346677888775 578877665554
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.01 Score=53.33 Aligned_cols=114 Identities=20% Similarity=0.190 Sum_probs=70.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchh----------------h-hHHHHHhhhhccCCeEEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYE----------------T-SLKKARKGLLERAGVFVID 137 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----------------~-~~~~~~~~~~~~~~v~~~~ 137 (424)
.+...+|+|.|+ |++|..+++.|++.|. +++++|.+.-... . .....-......-+++.+.
T Consensus 25 ~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~ 103 (212)
T PRK08644 25 KLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN 103 (212)
T ss_pred HHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 356678999997 9999999999999997 5888888631100 0 0000111122334566666
Q ss_pred ccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCcccCC
Q 042406 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS-DPQPAIVWASSSSVYGV 212 (424)
Q Consensus 138 ~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~~v~~SS~~vyg~ 212 (424)
..+++ +.+.+.+++. |+||.+... ...-..+.+.|.+. +. .+|+.|..+.|+.
T Consensus 104 ~~i~~-~~~~~~~~~~--DvVI~a~D~-----------------~~~r~~l~~~~~~~~~~--p~I~~~~~~~~~~ 157 (212)
T PRK08644 104 EKIDE-DNIEELFKDC--DIVVEAFDN-----------------AETKAMLVETVLEHPGK--KLVAASGMAGYGD 157 (212)
T ss_pred eecCH-HHHHHHHcCC--CEEEECCCC-----------------HHHHHHHHHHHHHhCCC--CEEEeehhhccCC
Confidence 66654 4566778766 999987421 11223455666666 54 5777766555553
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.01 Score=54.42 Aligned_cols=113 Identities=18% Similarity=0.153 Sum_probs=69.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhh------------------HHHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETS------------------LKKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~------------------~~~~~~~~~~~~~v~~~ 136 (424)
.+...+|+|.|+ |++|..+++.|+..|. +++++|.+.-..... ..+...+....-.++.+
T Consensus 21 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~ 99 (240)
T TIGR02355 21 ALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI 99 (240)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 356678999997 9999999999999995 788888754321100 00111112223345555
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg 211 (424)
...+. .+.+.+++++. |+||.+... + ..-..+-++|.+.+. .+|+.++.+.+|
T Consensus 100 ~~~i~-~~~~~~~~~~~--DlVvd~~D~---------~--------~~r~~ln~~~~~~~i--p~v~~~~~g~~G 152 (240)
T TIGR02355 100 NAKLD-DAELAALIAEH--DIVVDCTDN---------V--------EVRNQLNRQCFAAKV--PLVSGAAIRMEG 152 (240)
T ss_pred eccCC-HHHHHHHhhcC--CEEEEcCCC---------H--------HHHHHHHHHHHHcCC--CEEEEEecccEe
Confidence 44443 35567777766 999987632 1 112345577888876 488777655555
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.002 Score=64.35 Aligned_cols=80 Identities=23% Similarity=0.243 Sum_probs=58.1
Q ss_pred CCCCCCeEEEEcC----------------CChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEc
Q 042406 75 RSTRGLTVLVTGA----------------AGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138 (424)
Q Consensus 75 ~~~~~~~vlItGg----------------~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~ 138 (424)
+++.||+||||+| ||-.|.+|++++..+|++|+++.-..+ .....+++++.
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~------------~~~p~~v~~i~- 318 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD------------LADPQGVKVIH- 318 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC------------CCCCCCceEEE-
Confidence 3589999999998 678999999999999999999974221 01224566664
Q ss_pred cCCCHHHHHHHhhc-cCccEEEEcccccCch
Q 042406 139 DINDKSLLDKIFNV-VAFTHVMHLAAQAGVR 168 (424)
Q Consensus 139 Dl~d~~~v~~~~~~-~~~d~vi~~Ag~~~~~ 168 (424)
+...+++.+++.+ .+.|++|++|++.+..
T Consensus 319 -V~ta~eM~~av~~~~~~Di~I~aAAVaDyr 348 (475)
T PRK13982 319 -VESARQMLAAVEAALPADIAIFAAAVADWR 348 (475)
T ss_pred -ecCHHHHHHHHHhhCCCCEEEEecccccee
Confidence 4455555555433 3569999999997654
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0042 Score=62.72 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=56.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d~v 158 (424)
|+|+|+|+ |.+|+.+++.|.++|++|++++++.+.... .. ...++.++.+|.++.+.+.++ +++. |.|
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~----~~----~~~~~~~~~gd~~~~~~l~~~~~~~a--~~v 69 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRR----LQ----DRLDVRTVVGNGSSPDVLREAGAEDA--DLL 69 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHH----HH----hhcCEEEEEeCCCCHHHHHHcCCCcC--CEE
Confidence 67999998 999999999999999999999985432111 11 124688999999999988887 6655 988
Q ss_pred EEcc
Q 042406 159 MHLA 162 (424)
Q Consensus 159 i~~A 162 (424)
|-+.
T Consensus 70 i~~~ 73 (453)
T PRK09496 70 IAVT 73 (453)
T ss_pred EEec
Confidence 8765
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0024 Score=61.65 Aligned_cols=70 Identities=23% Similarity=0.160 Sum_probs=45.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCe---EEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDG---VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~---V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
+++|+|.||||++|+.|++.|.++||. ++.+.+..+..... ...+......|+.+. .++++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l---------~~~g~~i~v~d~~~~-----~~~~v-- 64 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL---------SFKGKELKVEDLTTF-----DFSGV-- 64 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee---------eeCCceeEEeeCCHH-----HHcCC--
Confidence 478999999999999999999998874 47776643321111 011233444466532 23444
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+||.+++.
T Consensus 65 DvVf~A~g~ 73 (334)
T PRK14874 65 DIALFSAGG 73 (334)
T ss_pred CEEEECCCh
Confidence 999988764
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=62.14 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchh
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYE 117 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 117 (424)
|+|.|+| .|.+|..++..|+++|++|++++|+.+..+
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~~~~ 39 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPAAAA 39 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHHHHH
Confidence 5799999 599999999999999999999999765443
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0023 Score=54.34 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.++++++|+|+ |.+|..+++.|++.| ++|++++|+.+......... ... .+..+..+.+ +++++.
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~-----~~~---~~~~~~~~~~---~~~~~~-- 82 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF-----GEL---GIAIAYLDLE---ELLAEA-- 82 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-----hhc---ccceeecchh---hccccC--
Confidence 45678999998 999999999999996 78999998654332211111 111 1222344433 335555
Q ss_pred cEEEEcccccC
Q 042406 156 THVMHLAAQAG 166 (424)
Q Consensus 156 d~vi~~Ag~~~ 166 (424)
|+||++.....
T Consensus 83 Dvvi~~~~~~~ 93 (155)
T cd01065 83 DLIINTTPVGM 93 (155)
T ss_pred CEEEeCcCCCC
Confidence 99999987643
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.01 Score=47.59 Aligned_cols=71 Identities=27% Similarity=0.301 Sum_probs=51.4
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEEc
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHL 161 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~~ 161 (424)
|+|.|. |-+|..+++.|.+.+.+|++++++.+. .+.....++.++.+|.+|.+.++++--+ +.+.|+-+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~---------~~~~~~~~~~~i~gd~~~~~~l~~a~i~-~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPER---------VEELREEGVEVIYGDATDPEVLERAGIE-KADAVVIL 69 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHH---------HHHHHHTTSEEEES-TTSHHHHHHTTGG-CESEEEEE
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHH---------HHHHHhcccccccccchhhhHHhhcCcc-ccCEEEEc
Confidence 578887 789999999999987799999985432 1112234588999999999998876322 45888866
Q ss_pred cc
Q 042406 162 AA 163 (424)
Q Consensus 162 Ag 163 (424)
..
T Consensus 70 ~~ 71 (116)
T PF02254_consen 70 TD 71 (116)
T ss_dssp SS
T ss_pred cC
Confidence 53
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0071 Score=49.09 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=52.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCC-CeEE-EEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRG-DGVL-GLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g-~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
||.|+||||++|+.|++.|+++- .+++ ++.+..+. ................+.+. | .+.+. +.++ |+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~--Dvv 70 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSA-GKPLSEVFPHPKGFEDLSVE--D-ADPEE----LSDV--DVV 70 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTT-TSBHHHTTGGGTTTEEEBEE--E-TSGHH----HTTE--SEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecccc-CCeeehhccccccccceeEe--e-cchhH----hhcC--CEE
Confidence 58999999999999999999975 3544 44443311 11111111111111122222 2 34333 2544 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSS 207 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~ 207 (424)
|.|.+.. .+..+.+.+.+.+. ++|=.|+.
T Consensus 71 f~a~~~~------------------~~~~~~~~~~~~g~--~ViD~s~~ 99 (121)
T PF01118_consen 71 FLALPHG------------------ASKELAPKLLKAGI--KVIDLSGD 99 (121)
T ss_dssp EE-SCHH------------------HHHHHHHHHHHTTS--EEEESSST
T ss_pred EecCchh------------------HHHHHHHHHhhCCc--EEEeCCHH
Confidence 9987531 13456666666665 56666654
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.013 Score=52.02 Aligned_cols=115 Identities=16% Similarity=0.198 Sum_probs=72.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhh--------------------HHHHHhhhhccCCeE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETS--------------------LKKARKGLLERAGVF 134 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~--------------------~~~~~~~~~~~~~v~ 134 (424)
.++..+|+|.|+ |++|.++++.|+..|. +++++|.+.-..... ....-.+....-+++
T Consensus 16 ~L~~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 16 KLRSAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLS 94 (198)
T ss_pred HHhhCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEE
Confidence 355678999998 5599999999999996 688888653211000 000111222334556
Q ss_pred EEEccCCC-HHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 135 VIDADIND-KSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 135 ~~~~Dl~d-~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
.+..++.+ .+...+.++.. |+||.+... ......+-+.|++.+. .+|+.++.+.||.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~--dvVi~~~d~-----------------~~~~~~ln~~c~~~~i--p~i~~~~~G~~G~ 152 (198)
T cd01485 95 IVEEDSLSNDSNIEEYLQKF--TLVIATEEN-----------------YERTAKVNDVCRKHHI--PFISCATYGLIGY 152 (198)
T ss_pred EEecccccchhhHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeecCEEE
Confidence 66656642 44566677765 999876321 1122345577888886 5899988888775
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.009 Score=56.85 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=74.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhh-ccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLL-ERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|+|.|.|+ |.+|..++..|+.+|. +|+++|+..+.............. ...... +.. ..|.+ + +++. |+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~-i~~-t~d~~---~-~~~a--Di 72 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTK-VTG-TNNYA---D-TANS--DI 72 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcE-EEe-cCCHH---H-hCCC--CE
Confidence 57999997 9999999999999886 899999965532211111111000 000111 111 12322 2 4555 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
||-++|.... ...+..+.+..|..-...+++...+.+....+|.+|.
T Consensus 73 VIitag~p~~--~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 73 VVITAGLPRK--PGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred EEEcCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 9999986432 1234457888999999999998888776657777775
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0037 Score=56.83 Aligned_cols=122 Identities=20% Similarity=0.136 Sum_probs=75.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
..++.+|.|.||+|+||+.|...|. ....|.-+.-..-...+........... .......+-.+.+++++++.
T Consensus 25 ~~~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GVaaDlSHI~T----~s~V~g~~g~~~L~~al~~a-- 97 (345)
T KOG1494|consen 25 SQRGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGVAADLSHINT----NSSVVGFTGADGLENALKGA-- 97 (345)
T ss_pred ccCcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCcccccccccCC----CCceeccCChhHHHHHhcCC--
Confidence 3466789999999999999998554 5444333322110000111111111111 11122333466899999988
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+|+-=||+.. ..--..++.|++|..-...|..++.+.-+...+.++|-
T Consensus 98 dvVvIPAGVPR--KPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 98 DVVVIPAGVPR--KPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN 146 (345)
T ss_pred CEEEecCCCCC--CCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence 99999999732 22234578999999999999999888766545666653
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.021 Score=47.82 Aligned_cols=108 Identities=22% Similarity=0.250 Sum_probs=67.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCch--------------hhhH----HHHHhhhhccCCeEEEEccCC
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYY--------------ETSL----KKARKGLLERAGVFVIDADIN 141 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~--------------~~~~----~~~~~~~~~~~~v~~~~~Dl~ 141 (424)
+|+|.|+ |++|..+++.|+..|. +++++|.+.-.. ...+ .+.-.+....-.++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 4899997 9999999999999997 688888653111 0000 001111122334556666655
Q ss_pred CHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 042406 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 142 d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg 211 (424)
+.. ..+.+++. |+||.+... ......+.+.|++.+. .+|..++.+.+|
T Consensus 80 ~~~-~~~~~~~~--diVi~~~d~-----------------~~~~~~l~~~~~~~~i--~~i~~~~~g~~g 127 (143)
T cd01483 80 EDN-LDDFLDGV--DLVIDAIDN-----------------IAVRRALNRACKELGI--PVIDAGGLGLGG 127 (143)
T ss_pred hhh-HHHHhcCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEcCCCcEE
Confidence 433 35666655 999988642 1223456778888875 588877765444
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0034 Score=53.99 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=47.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
++.+++|+|+|+++.+|..+++.|.++|.+|+++.|+. +.+.+.+.+.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------------------------~~l~~~l~~a-- 88 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------------------------KNLKEHTKQA-- 88 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------------------------hhHHHHHhhC--
Confidence 57899999999977789999999999999999998731 3456677777
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+||.+.+.
T Consensus 89 DiVIsat~~ 97 (168)
T cd01080 89 DIVIVAVGK 97 (168)
T ss_pred CEEEEcCCC
Confidence 999998775
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.018 Score=50.05 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=65.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCC---chh----------hhH----HHHHhhhhccCCeEEEEccCCC
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNN---YYE----------TSL----KKARKGLLERAGVFVIDADIND 142 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~---~~~----------~~~----~~~~~~~~~~~~v~~~~~Dl~d 142 (424)
+|+|.|+ |++|..+++.|++.|. +++++|.+.- ... ..+ .....+.....+++.+...+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 4899997 9999999999999997 5999998751 110 000 1111112233456666666644
Q ss_pred HHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCcccCC
Q 042406 143 KSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS-DPQPAIVWASSSSVYGV 212 (424)
Q Consensus 143 ~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~~v~~SS~~vyg~ 212 (424)
+.+.+++++. |+||.+... ...-..+.+.+.+. +. .+|+.+..+.|+.
T Consensus 80 -~~~~~~l~~~--DlVi~~~d~-----------------~~~r~~i~~~~~~~~~i--p~i~~~~~~~~~~ 128 (174)
T cd01487 80 -NNLEGLFGDC--DIVVEAFDN-----------------AETKAMLAESLLGNKNK--PVVCASGMAGFGD 128 (174)
T ss_pred -hhHHHHhcCC--CEEEECCCC-----------------HHHHHHHHHHHHHHCCC--CEEEEehhhccCC
Confidence 5677788866 999987421 11112355555555 54 4776665555543
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.048 Score=50.61 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=64.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchh----------h--------hHHHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYE----------T--------SLKKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~----------~--------~~~~~~~~~~~~~~v~~~ 136 (424)
.+.+.+|+|.|+ |++|.++++.|++.| -+++++|.+.-... . ...+...+.+..-++..+
T Consensus 27 kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i 105 (268)
T PRK15116 27 LFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV 105 (268)
T ss_pred HhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence 456778999997 999999999999999 57888886532110 0 000111111222234444
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
.. .-+++.+.+++.. ++|+||.+.... ..-..|.+.|++.+. .+|...+
T Consensus 106 ~~-~i~~e~~~~ll~~-~~D~VIdaiD~~-----------------~~k~~L~~~c~~~~i--p~I~~gG 154 (268)
T PRK15116 106 DD-FITPDNVAEYMSA-GFSYVIDAIDSV-----------------RPKAALIAYCRRNKI--PLVTTGG 154 (268)
T ss_pred ec-ccChhhHHHHhcC-CCCEEEEcCCCH-----------------HHHHHHHHHHHHcCC--CEEEECC
Confidence 22 2245566666642 459999886431 122357788888876 3554433
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.015 Score=56.57 Aligned_cols=113 Identities=19% Similarity=0.040 Sum_probs=71.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCch-----------------hh-hHHHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYY-----------------ET-SLKKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~-----------------~~-~~~~~~~~~~~~~~v~~~ 136 (424)
.+...+|+|.|+ |++|..+++.|+..|. +++++|.+.-.. .. ...+.-.+....-+++.+
T Consensus 25 ~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~ 103 (355)
T PRK05597 25 SLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS 103 (355)
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence 456788999998 9999999999999996 788888764111 00 011111122333456666
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg 211 (424)
...++. +...+++++. |+||.+... ...-..+-++|.+.+. -+|+.++.+.+|
T Consensus 104 ~~~i~~-~~~~~~~~~~--DvVvd~~d~-----------------~~~r~~~n~~c~~~~i--p~v~~~~~g~~g 156 (355)
T PRK05597 104 VRRLTW-SNALDELRDA--DVILDGSDN-----------------FDTRHLASWAAARLGI--PHVWASILGFDA 156 (355)
T ss_pred EeecCH-HHHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEEecCeE
Confidence 666654 4556677766 999988632 1112235567888776 488877655554
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.014 Score=57.36 Aligned_cols=112 Identities=18% Similarity=0.164 Sum_probs=70.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCC-------------------CchhhhHHHHHhhhhccCCeEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFN-------------------NYYETSLKKARKGLLERAGVFV 135 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~v~~ 135 (424)
.+..++|+|.|+ |++|..++..|+..|. +++++|++. .+.+...... .+....-.+..
T Consensus 132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l-~~~np~v~v~~ 209 (376)
T PRK08762 132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRL-AALNPDVQVEA 209 (376)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHH-HHHCCCCEEEE
Confidence 456788999986 9999999999999997 788998862 1111111111 11122234455
Q ss_pred EEccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 042406 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 136 ~~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg 211 (424)
+...+.+ +.+.+++++. |+||++... +. .-..+-++|.+.+. .+|+.+..+.+|
T Consensus 210 ~~~~~~~-~~~~~~~~~~--D~Vv~~~d~---------~~--------~r~~ln~~~~~~~i--p~i~~~~~g~~g 263 (376)
T PRK08762 210 VQERVTS-DNVEALLQDV--DVVVDGADN---------FP--------TRYLLNDACVKLGK--PLVYGAVFRFEG 263 (376)
T ss_pred EeccCCh-HHHHHHHhCC--CEEEECCCC---------HH--------HHHHHHHHHHHcCC--CEEEEEeccCEE
Confidence 5555543 5567777766 999998632 11 11235577888876 588887655544
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.022 Score=52.42 Aligned_cols=113 Identities=18% Similarity=0.153 Sum_probs=70.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhh--------------H----HHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETS--------------L----KKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~--------------~----~~~~~~~~~~~~v~~~ 136 (424)
.++.++|+|.|+ |++|..+++.|+..|. +++++|.+.-..... + ...-.+....-+++.+
T Consensus 29 ~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~ 107 (245)
T PRK05690 29 KLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI 107 (245)
T ss_pred HhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence 456788999998 9999999999999995 788887654221110 0 0111122233456666
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg 211 (424)
...++ .+.+.+++++. |+||.+... + ..-..+-++|.+.+. .+|+.++.+.+|
T Consensus 108 ~~~i~-~~~~~~~~~~~--DiVi~~~D~---------~--------~~r~~ln~~~~~~~i--p~v~~~~~g~~G 160 (245)
T PRK05690 108 NARLD-DDELAALIAGH--DLVLDCTDN---------V--------ATRNQLNRACFAAKK--PLVSGAAIRMEG 160 (245)
T ss_pred eccCC-HHHHHHHHhcC--CEEEecCCC---------H--------HHHHHHHHHHHHhCC--EEEEeeeccCCc
Confidence 66665 45567778866 999988632 1 112345567777775 477766554444
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.025 Score=50.31 Aligned_cols=82 Identities=21% Similarity=0.226 Sum_probs=55.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCC---CCchhh----------hH----HHHHhhhhccCCeEEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNF---NNYYET----------SL----KKARKGLLERAGVFVID 137 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~---~~~~~~----------~~----~~~~~~~~~~~~v~~~~ 137 (424)
.+..++|+|.|+ |++|..++..|++.|. +|+++|++ .+.... .+ ............++.+.
T Consensus 18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 356778999998 8999999999999998 69999987 221110 00 00111112234566666
Q ss_pred ccCCCHHHHHHHhhccCccEEEEc
Q 042406 138 ADINDKSLLDKIFNVVAFTHVMHL 161 (424)
Q Consensus 138 ~Dl~d~~~v~~~~~~~~~d~vi~~ 161 (424)
.+++ .+.+.++++++ |+||.+
T Consensus 97 ~~i~-~~~~~~~~~~~--DlVi~a 117 (200)
T TIGR02354 97 EKIT-EENIDKFFKDA--DIVCEA 117 (200)
T ss_pred eeCC-HhHHHHHhcCC--CEEEEC
Confidence 6665 46677788866 999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0072 Score=60.92 Aligned_cols=78 Identities=21% Similarity=0.131 Sum_probs=51.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+.+|+|+|||++| +|..+++.|+++|++|++.++........... +...++.+..++.. .. .++. ++|
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~-----l~~~g~~~~~~~~~--~~---~~~~-~~d 70 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQE-----LLEEGIKVICGSHP--LE---LLDE-DFD 70 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHH-----HHhcCCEEEeCCCC--HH---HhcC-cCC
Confidence 4688999999976 99999999999999999999765332221111 12234555443321 11 1222 359
Q ss_pred EEEEcccccC
Q 042406 157 HVMHLAAQAG 166 (424)
Q Consensus 157 ~vi~~Ag~~~ 166 (424)
.||+++|+..
T Consensus 71 ~vV~s~gi~~ 80 (447)
T PRK02472 71 LMVKNPGIPY 80 (447)
T ss_pred EEEECCCCCC
Confidence 9999999743
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.022 Score=53.17 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=69.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchh-----------------h-hHHHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYE-----------------T-SLKKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-----------------~-~~~~~~~~~~~~~~v~~~ 136 (424)
.+...+|+|.|+ |++|..+++.|+..|. +++++|.+.-... . .......+.+..-+++.+
T Consensus 24 kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~ 102 (287)
T PRK08223 24 RLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF 102 (287)
T ss_pred HHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 356678999998 9999999999999995 6888877542110 0 011111122333456666
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSV 209 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~v 209 (424)
...++. +.+.+++++. |+||.+.-.. ++..-..+-++|.+.+. -+|+.|..+.
T Consensus 103 ~~~l~~-~n~~~ll~~~--DlVvD~~D~~---------------~~~~r~~ln~~c~~~~i--P~V~~~~~g~ 155 (287)
T PRK08223 103 PEGIGK-ENADAFLDGV--DVYVDGLDFF---------------EFDARRLVFAACQQRGI--PALTAAPLGM 155 (287)
T ss_pred ecccCc-cCHHHHHhCC--CEEEECCCCC---------------cHHHHHHHHHHHHHcCC--CEEEEeccCC
Confidence 666653 4566778766 9998654211 11122446678888886 4777765443
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.022 Score=53.98 Aligned_cols=110 Identities=20% Similarity=0.229 Sum_probs=69.6
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhh--------------hH----HHHHhhhhccCCeEEEEccCC
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYET--------------SL----KKARKGLLERAGVFVIDADIN 141 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~--------------~~----~~~~~~~~~~~~v~~~~~Dl~ 141 (424)
+|+|.|+ |++|.++++.|+..|. +++++|.+.-.... .+ ...-.+....-.+..+..++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 4899997 9999999999999996 78888765422110 00 111112223446777778887
Q ss_pred CHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 142 d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
+.....+++++. |+||.+... ...-..+-+.|...+. .+|...+.+.+|.
T Consensus 80 ~~~~~~~f~~~~--DvVv~a~Dn-----------------~~ar~~in~~c~~~~i--p~I~~gt~G~~G~ 129 (312)
T cd01489 80 DPDFNVEFFKQF--DLVFNALDN-----------------LAARRHVNKMCLAADV--PLIESGTTGFLGQ 129 (312)
T ss_pred CccchHHHHhcC--CEEEECCCC-----------------HHHHHHHHHHHHHCCC--CEEEEecCcceeE
Confidence 754445677766 999987521 1122335566777765 5888777766553
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0014 Score=58.41 Aligned_cols=38 Identities=32% Similarity=0.342 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
.+++||+|+|+|. |.+|+.+++.|.+.|++|++.+++.
T Consensus 24 ~~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 24 DSLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 3578999999998 7999999999999999999998864
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.023 Score=57.32 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=71.1
Q ss_pred EEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEEcc-
Q 042406 84 VTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLA- 162 (424)
Q Consensus 84 ItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~~A- 162 (424)
|+||+|++|..+++.|...|++|+...+.... .. ..+..+++.+++-+
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~---------~~----------------------~~~~~~~~~~~~d~~ 91 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGYDVVANNDGGLT---------WA----------------------AGWGDRFGALVFDAT 91 (450)
T ss_pred EEccCchhHHHHHHHHhhCCCeeeecCccccc---------cc----------------------cCcCCcccEEEEECC
Confidence 88999999999999999999999987652210 00 00011234322221
Q ss_pred cccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 042406 163 AQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIA 242 (424)
Q Consensus 163 g~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~ 242 (424)
+. ..++..... .......++.+.. ..+||+++|..... ....|+.+|.+.+.++
T Consensus 92 ~~-------~~~~~l~~~-~~~~~~~l~~l~~---~griv~i~s~~~~~---------------~~~~~~~akaal~gl~ 145 (450)
T PRK08261 92 GI-------TDPADLKAL-YEFFHPVLRSLAP---CGRVVVLGRPPEAA---------------ADPAAAAAQRALEGFT 145 (450)
T ss_pred CC-------CCHHHHHHH-HHHHHHHHHhccC---CCEEEEEccccccC---------------CchHHHHHHHHHHHHH
Confidence 11 111111111 1112222333322 23899999865531 1235999999999999
Q ss_pred HHHHHHh--CCcEEEEEecc
Q 042406 243 HAYNHIY--GLSITGLRFFT 260 (424)
Q Consensus 243 ~~~~~~~--~i~~~~vrp~~ 260 (424)
+.+++++ ++++..|.|+.
T Consensus 146 rsla~E~~~gi~v~~i~~~~ 165 (450)
T PRK08261 146 RSLGKELRRGATAQLVYVAP 165 (450)
T ss_pred HHHHHHhhcCCEEEEEecCC
Confidence 9998875 68888888753
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0087 Score=52.20 Aligned_cols=71 Identities=30% Similarity=0.310 Sum_probs=48.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
...+.|++|.|.|. |-||+.+++.|..-|.+|++.+|...... .. ....+ ...++++++++.
T Consensus 31 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~------~~---~~~~~--------~~~~l~ell~~a 92 (178)
T PF02826_consen 31 GRELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEE------GA---DEFGV--------EYVSLDELLAQA 92 (178)
T ss_dssp BS-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHH------HH---HHTTE--------EESSHHHHHHH-
T ss_pred ccccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhh------hc---ccccc--------eeeehhhhcchh
Confidence 45689999999996 99999999999999999999999654211 00 00111 122566778877
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
|+|+.+...
T Consensus 93 --Div~~~~pl 101 (178)
T PF02826_consen 93 --DIVSLHLPL 101 (178)
T ss_dssp --SEEEE-SSS
T ss_pred --hhhhhhhcc
Confidence 998887754
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.025 Score=50.13 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=69.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhh------------------hHHHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYET------------------SLKKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~------------------~~~~~~~~~~~~~~v~~~ 136 (424)
.+..++|+|.|+ |++|.++++.|+..|. +++++|...-.... ...+.-.+.+..-.++.+
T Consensus 18 ~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 18 RLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 356678999987 6699999999999996 68888865321100 001111122233345556
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
...+.+ ...+.+++. |+||.+... .+ .-..+-+.|++.+. .+|+.++.+.+|.
T Consensus 97 ~~~~~~--~~~~~~~~~--dvVi~~~~~---------~~--------~~~~ln~~c~~~~i--p~i~~~~~G~~G~ 149 (197)
T cd01492 97 TDDISE--KPEEFFSQF--DVVVATELS---------RA--------ELVKINELCRKLGV--KFYATGVHGLFGF 149 (197)
T ss_pred ecCccc--cHHHHHhCC--CEEEECCCC---------HH--------HHHHHHHHHHHcCC--CEEEEEecCCEEE
Confidence 555552 245566765 999876421 11 12335577888886 4888888777774
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.041 Score=52.31 Aligned_cols=113 Identities=16% Similarity=0.105 Sum_probs=71.2
Q ss_pred EEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhh--ccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLL--ERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
|.|.|+ |.+|..++..|+..|. +|+++|++.+...... ....... ......+. . -.|. +.+++. |+|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~-~dl~~~~~~~~~~~~I~-~-t~d~----~~l~dA--DiV 70 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKA-LDISQAAPILGSDTKVT-G-TNDY----EDIAGS--DVV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHH-HHHHHhhhhcCCCeEEE-E-cCCH----HHhCCC--CEE
Confidence 468998 9999999999998876 9999999865432111 1111111 11111211 1 1232 236666 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|.+++.... ...+....+.-|..-...+++.+.+......+|.+|-
T Consensus 71 Iit~g~p~~--~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 71 VITAGIPRK--PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred EEecCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999986432 1233345777788888889988888776546666664
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.029 Score=53.17 Aligned_cols=164 Identities=15% Similarity=0.082 Sum_probs=99.0
Q ss_pred EEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhh-ccCCeEEEEccCCCHHHHHHHhhccCccEEEE
Q 042406 84 VTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLL-ERAGVFVIDADINDKSLLDKIFNVVAFTHVMH 160 (424)
Q Consensus 84 ItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~ 160 (424)
|.|+ |.||..++..|+..+. +++++|++.+.............. ....+.+.. .| .+.+++. |+||-
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~----~~~~~da--DivVi 70 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS---GD----YSDCKDA--DLVVI 70 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec---CC----HHHHCCC--CEEEE
Confidence 4565 9999999999998874 799999976654433322222111 112333332 33 3456666 99999
Q ss_pred cccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc---ccCCCCCCCCCCCCCCCCCCChHHH-HHH
Q 042406 161 LAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSS---VYGVNKKVPFSEKDRTDQPASLYAA-TKK 236 (424)
Q Consensus 161 ~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~---vyg~~~~~~~~e~~~~~~~~~~Y~~-sK~ 236 (424)
+||.... ...+..+.+..|..-...+.+.+.+++....++.+|... .|-... .. ..++....|. +.+
T Consensus 71 tag~~rk--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~~-----~s--g~p~~~viG~gt~L 141 (299)
T TIGR01771 71 TAGAPQK--PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWK-----LS--GFPKNRVIGSGTVL 141 (299)
T ss_pred CCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH-----Hh--CCCHHHEEeccchH
Confidence 9997432 233557899999999999999999888776777777511 000000 00 0011112222 333
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
..-++...+++..++...-++. .|+|..+.
T Consensus 142 Ds~R~~~~la~~l~v~~~~V~~-~v~GeHG~ 171 (299)
T TIGR01771 142 DTARLRYLLAEKLGVDPQSVHA-YIIGEHGD 171 (299)
T ss_pred HHHHHHHHHHHHhCcCcCeEEE-EEEecCCC
Confidence 3345555566667888888885 58887643
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.031 Score=51.85 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=26.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEE-eCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKR-GDGVLGL-DNF 112 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~-~r~ 112 (424)
++|.|+|++|.+|+.+++.+.+. +.+++.+ +++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~ 36 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP 36 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 68999999999999999988875 5777664 443
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0056 Score=57.35 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=33.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN 111 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r 111 (424)
..+||+|+|.|++|.+|+.++..|+++|+.|+++.|
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 578999999999999999999999999999998876
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0051 Score=57.81 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=35.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCch
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYY 116 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~ 116 (424)
...+++++|+|+ |++|+.++..|++.| .+|++++|+.++.
T Consensus 120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a 160 (278)
T PRK00258 120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERA 160 (278)
T ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 467889999997 999999999999999 7999999976543
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.018 Score=55.44 Aligned_cols=76 Identities=26% Similarity=0.224 Sum_probs=48.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC---HHHHHHHhhccCc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND---KSLLDKIFNVVAF 155 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~v~~~~~~~~~ 155 (424)
+.+|||+||+|++|...++.+.+.|+.+++...++++.+ ....+. .-+.+ |..+ .+.+++...+.++
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~------~~~~lG--Ad~vi--~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE------LLKELG--ADHVI--NYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH------HHHhcC--CCEEE--cCCcccHHHHHHHHcCCCCc
Confidence 788999999999999999999999977666655332111 111111 11122 2333 2344555554467
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+|+..-|-
T Consensus 213 Dvv~D~vG~ 221 (326)
T COG0604 213 DVVLDTVGG 221 (326)
T ss_pred eEEEECCCH
Confidence 999998774
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.014 Score=47.67 Aligned_cols=95 Identities=15% Similarity=0.204 Sum_probs=54.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHh-CCCeEEE-EeCCCCchh-hhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKK-RGDGVLG-LDNFNNYYE-TSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~-~g~~V~~-~~r~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+|+|.|++|-+|+.+++.+.+ .|.++.. ++|..+... ........ .... .+.-.++++++++.. |
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~--~~~~-------~~~v~~~l~~~~~~~--D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAG--IGPL-------GVPVTDDLEELLEEA--D 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCT--SST--------SSBEBS-HHHHTTH---S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhC--cCCc-------ccccchhHHHhcccC--C
Confidence 5799999999999999999999 5777554 455442111 11110000 0011 121225677788875 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
++|...- -..+...++.|.+++. .+|.-+
T Consensus 70 VvIDfT~------------------p~~~~~~~~~~~~~g~--~~ViGT 98 (124)
T PF01113_consen 70 VVIDFTN------------------PDAVYDNLEYALKHGV--PLVIGT 98 (124)
T ss_dssp EEEEES-------------------HHHHHHHHHHHHHHT---EEEEE-
T ss_pred EEEEcCC------------------hHHhHHHHHHHHhCCC--CEEEEC
Confidence 9998752 1245567788888875 455333
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.042 Score=49.99 Aligned_cols=110 Identities=15% Similarity=0.079 Sum_probs=68.3
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhh----------h----H----HHHHhhhhccCCeEEEEccCC
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYET----------S----L----KKARKGLLERAGVFVIDADIN 141 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~----------~----~----~~~~~~~~~~~~v~~~~~Dl~ 141 (424)
+|+|.|+ |++|.++++.|+..|. +++++|.+.-.... . + ...-.+....-++..+..++.
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 4889986 9999999999999996 68888775422110 0 0 001111223345677777776
Q ss_pred CHHHH-HHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 142 DKSLL-DKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 142 d~~~v-~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
+.+.. .+++++. |+||.+.. |+..-..+-+.|...+. .+|..++.+.+|.
T Consensus 80 ~~~~~~~~f~~~~--DvVi~a~D-----------------n~~aR~~ln~~c~~~~i--plI~~g~~G~~G~ 130 (234)
T cd01484 80 PEQDFNDTFFEQF--HIIVNALD-----------------NIIARRYVNGMLIFLIV--PLIESGTEGFKGN 130 (234)
T ss_pred hhhhchHHHHhCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCC--CEEEEcccCCceE
Confidence 54332 4566755 99998742 22223445666777775 5888877666653
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.034 Score=54.92 Aligned_cols=114 Identities=18% Similarity=0.106 Sum_probs=71.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhh--------------hH----HHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYET--------------SL----KKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~--------------~~----~~~~~~~~~~~~v~~~ 136 (424)
.+...+|+|.|+ |++|..+++.|+..|. +++++|.+.-.... .+ .+.-.+.+..-+++.+
T Consensus 39 ~L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 39 RLKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred HHhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 356678999997 9999999999999996 67777765311100 00 0011112223345556
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
...++. +...+++++. |+||.+... ...-..+-++|.+.+. .+|+.+..+.+|.
T Consensus 118 ~~~i~~-~~~~~~~~~~--D~Vvd~~d~-----------------~~~r~~ln~~~~~~~~--p~v~~~~~g~~G~ 171 (392)
T PRK07878 118 EFRLDP-SNAVELFSQY--DLILDGTDN-----------------FATRYLVNDAAVLAGK--PYVWGSIYRFEGQ 171 (392)
T ss_pred eccCCh-hHHHHHHhcC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeccCEEE
Confidence 666654 4566777766 999987532 1122335567788775 5888888777664
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.055 Score=48.56 Aligned_cols=116 Identities=21% Similarity=0.180 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCch------hhh-----------HHHHHhhhhccCCeEEEEc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYY------ETS-----------LKKARKGLLERAGVFVIDA 138 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~------~~~-----------~~~~~~~~~~~~~v~~~~~ 138 (424)
++..+|+|.|. |++|++.++.|++.|. +++++|-+.-.. ..+ .-+.+.. .-++.+++...
T Consensus 28 l~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~-~InP~c~V~~~ 105 (263)
T COG1179 28 LKQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIK-QINPECEVTAI 105 (263)
T ss_pred HhhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHH-hhCCCceEeeh
Confidence 45667999997 9999999999999995 677666533111 000 0001111 11344444333
Q ss_pred -cCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC
Q 042406 139 -DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKV 216 (424)
Q Consensus 139 -Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~ 216 (424)
|.-.++.+++++.. .+|+||.+.- |+..=..|+..|.+++. -++||++.-+..++.
T Consensus 106 ~~f~t~en~~~~~~~-~~DyvIDaiD-----------------~v~~Kv~Li~~c~~~ki----~vIss~Gag~k~DPT 162 (263)
T COG1179 106 NDFITEENLEDLLSK-GFDYVIDAID-----------------SVRAKVALIAYCRRNKI----PVISSMGAGGKLDPT 162 (263)
T ss_pred HhhhCHhHHHHHhcC-CCCEEEEchh-----------------hhHHHHHHHHHHHHcCC----CEEeeccccCCCCCc
Confidence 34467777777776 7899998752 23334568888998765 366777776665543
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0087 Score=57.56 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=25.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGV 106 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V 106 (424)
++++|.|+||||++|+.|++.|.+++|.+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~ 31 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPV 31 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCc
Confidence 34789999999999999999999887643
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.011 Score=57.17 Aligned_cols=80 Identities=20% Similarity=0.155 Sum_probs=52.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh--cc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN--VV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~--~~ 153 (424)
-.+|+.|||.||+|++|.+.++-+...|..+++.+++.+..+ .. ..++ .. ...|..+++.+++..+ .-
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~-----l~-k~lG--Ad--~vvdy~~~~~~e~~kk~~~~ 224 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLE-----LV-KKLG--AD--EVVDYKDENVVELIKKYTGK 224 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHH-----HH-HHcC--Cc--EeecCCCHHHHHHHHhhcCC
Confidence 346889999999999999999999999954444444332211 11 1111 11 2347888666666655 33
Q ss_pred CccEEEEccccc
Q 042406 154 AFTHVMHLAAQA 165 (424)
Q Consensus 154 ~~d~vi~~Ag~~ 165 (424)
++|+|+.|.|-.
T Consensus 225 ~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 225 GVDVVLDCVGGS 236 (347)
T ss_pred CccEEEECCCCC
Confidence 689999999863
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.013 Score=55.23 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=50.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.+++++|+|. |.+|+.+++.|...|.+|++.+|+.+.... .. ..+...+ +.+.+.+.+++.
T Consensus 148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~----~~-----~~g~~~~-----~~~~l~~~l~~a-- 210 (287)
T TIGR02853 148 TIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLAR----IT-----EMGLIPF-----PLNKLEEKVAEI-- 210 (287)
T ss_pred CCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HH-----HCCCeee-----cHHHHHHHhccC--
Confidence 567899999998 889999999999999999999996432111 10 1122211 244566777766
Q ss_pred cEEEEccc
Q 042406 156 THVMHLAA 163 (424)
Q Consensus 156 d~vi~~Ag 163 (424)
|+||++..
T Consensus 211 DiVint~P 218 (287)
T TIGR02853 211 DIVINTIP 218 (287)
T ss_pred CEEEECCC
Confidence 99999763
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.017 Score=52.25 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=33.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY 116 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~ 116 (424)
|+|.|+||+|.+|..++..|++.|++|++.+|+.+..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~ 37 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKA 37 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHH
Confidence 6799999999999999999999999999999976543
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.033 Score=45.70 Aligned_cols=89 Identities=20% Similarity=0.274 Sum_probs=61.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+++++++.|. | -|..++..|.+.|++|+++|.++...+. . ....+.++.+|+.+++- +.-++. |.
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~----a-----~~~~~~~v~dDlf~p~~--~~y~~a--~l 80 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAVEK----A-----KKLGLNAFVDDLFNPNL--EIYKNA--KL 80 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHHHH----H-----HHhCCeEEECcCCCCCH--HHHhcC--CE
Confidence 4578999997 5 8999999999999999999996542111 1 22468999999998753 333333 76
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCC
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~ 198 (424)
|+-+ +.+.+. ...+++.+++.+..
T Consensus 81 iysi----------rpp~el-------~~~~~~la~~~~~~ 104 (134)
T PRK04148 81 IYSI----------RPPRDL-------QPFILELAKKINVP 104 (134)
T ss_pred EEEe----------CCCHHH-------HHHHHHHHHHcCCC
Confidence 6632 122222 24578889998876
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.042 Score=53.70 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=71.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhh--------------hH----HHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYET--------------SL----KKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~--------------~~----~~~~~~~~~~~~v~~~ 136 (424)
.+...+|+|.|+ |++|..++..|+..|. +++++|.+.-.... .+ ...-.+.+..-+++.+
T Consensus 38 ~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 116 (370)
T PRK05600 38 RLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL 116 (370)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 456778999997 9999999999999995 88888876311100 00 0011112233456666
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg 211 (424)
...++ .+.+.++++++ |+||.|... ...-..+-++|.+.+. -+|+.+..+-+|
T Consensus 117 ~~~i~-~~~~~~~~~~~--DlVid~~Dn-----------------~~~r~~in~~~~~~~i--P~v~~~~~g~~G 169 (370)
T PRK05600 117 RERLT-AENAVELLNGV--DLVLDGSDS-----------------FATKFLVADAAEITGT--PLVWGTVLRFHG 169 (370)
T ss_pred eeecC-HHHHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEEEecCEE
Confidence 66665 45667788866 999988632 1122334566777775 477777654444
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=55.20 Aligned_cols=39 Identities=26% Similarity=0.200 Sum_probs=34.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY 116 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~ 116 (424)
..+|+++|+|+ |++|+.++..|++.|++|++++|+.++.
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~ 153 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKA 153 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 45789999998 8999999999999999999999975443
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.029 Score=53.80 Aligned_cols=77 Identities=25% Similarity=0.235 Sum_probs=51.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh---ccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN---VVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~---~~~ 154 (424)
.+.+++|+|+++.+|..+++.+...|.+|++++++.+.... .. . . +.. ...|..+.+....+.+ +.+
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~----~~-~-~---~~~-~~~~~~~~~~~~~~~~~~~~~~ 235 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLER----AK-E-L---GAD-YVIDYRKEDFVREVRELTGKRG 235 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HH-H-c---CCC-eEEecCChHHHHHHHHHhCCCC
Confidence 56789999999999999999999999999999875432211 11 1 1 111 1235555544444332 335
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|++++++|.
T Consensus 236 ~d~~i~~~g~ 245 (342)
T cd08266 236 VDVVVEHVGA 245 (342)
T ss_pred CcEEEECCcH
Confidence 7999999873
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.041 Score=52.14 Aligned_cols=77 Identities=22% Similarity=0.200 Sum_probs=50.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH---HHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL---LDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---v~~~~~~~~ 154 (424)
.+++++|+|++|.+|..+++.+.+.|.+|++++++.+..+. .. . .++.. ..|..+.+. +.+...+.+
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~----~~-~----~g~~~-~~~~~~~~~~~~~~~~~~~~~ 213 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAEL----VR-Q----AGADA-VFNYRAEDLADRILAATAGQG 213 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HH-H----cCCCE-EEeCCCcCHHHHHHHHcCCCc
Confidence 57899999999999999999999999999999885432111 11 1 12211 134444333 333333336
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|.++++++.
T Consensus 214 ~d~vi~~~~~ 223 (325)
T cd08253 214 VDVIIEVLAN 223 (325)
T ss_pred eEEEEECCch
Confidence 7999999863
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.022 Score=56.26 Aligned_cols=77 Identities=17% Similarity=0.093 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEc--cCCCH----HHHHHHhh
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA--DINDK----SLLDKIFN 151 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~--Dl~d~----~~v~~~~~ 151 (424)
+.|+|||||++..+|..+++.|.+.|++|++++.+....... ... . . .++.+ .-.|. +.+.++++
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~-s~~-----~-d--~~~~~p~p~~d~~~~~~~L~~i~~ 73 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRF-SRA-----V-D--GFYTIPSPRWDPDAYIQALLSIVQ 73 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHH-HHh-----h-h--heEEeCCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999865332110 000 0 1 12222 12232 45666667
Q ss_pred ccCccEEEEccc
Q 042406 152 VVAFTHVMHLAA 163 (424)
Q Consensus 152 ~~~~d~vi~~Ag 163 (424)
+.++|+||-+..
T Consensus 74 ~~~id~vIP~~e 85 (389)
T PRK06849 74 RENIDLLIPTCE 85 (389)
T ss_pred HcCCCEEEECCh
Confidence 768899998764
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.043 Score=55.36 Aligned_cols=77 Identities=21% Similarity=0.213 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
...++|+|.|+ |.+|+.+++.|.+.|++|++++++.+.... ... ...++.++.+|.++.+.+.++--. +.|
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~----~~~---~~~~~~~i~gd~~~~~~L~~~~~~-~a~ 299 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEE----LAE---ELPNTLVLHGDGTDQELLEEEGID-EAD 299 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHH----HHH---HCCCCeEEECCCCCHHHHHhcCCc-cCC
Confidence 45789999998 999999999999999999999985432211 111 124678899999999888664322 448
Q ss_pred EEEEcc
Q 042406 157 HVMHLA 162 (424)
Q Consensus 157 ~vi~~A 162 (424)
.||-+.
T Consensus 300 ~vi~~~ 305 (453)
T PRK09496 300 AFIALT 305 (453)
T ss_pred EEEECC
Confidence 888554
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.013 Score=54.65 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=48.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.++||+|+|+|.++.+|+.++..|.++|+.|+++.+.. ..+.+.+++.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------------------------~~l~~~~~~A-- 202 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------------------------KDMASYLKDA-- 202 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHHhhC--
Confidence 57899999999999999999999999999999998621 2355667766
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+||...|..
T Consensus 203 DIVIsAvg~p 212 (286)
T PRK14175 203 DVIVSAVGKP 212 (286)
T ss_pred CEEEECCCCC
Confidence 9999988763
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.016 Score=56.73 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=54.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
..+.+|+|+|+ |.+|...++.|...|.+|++++|+.++.+. .. ... + ..+..+..+.+.+.+.+.+. |
T Consensus 165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~----l~-~~~---g-~~v~~~~~~~~~l~~~l~~a--D 232 (370)
T TIGR00518 165 VEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQ----LD-AEF---G-GRIHTRYSNAYEIEDAVKRA--D 232 (370)
T ss_pred CCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHH----HH-Hhc---C-ceeEeccCCHHHHHHHHccC--C
Confidence 35567999987 899999999999999999999985432111 11 001 1 12334566778888888876 9
Q ss_pred EEEEcccc
Q 042406 157 HVMHLAAQ 164 (424)
Q Consensus 157 ~vi~~Ag~ 164 (424)
+||++++.
T Consensus 233 vVI~a~~~ 240 (370)
T TIGR00518 233 LLIGAVLI 240 (370)
T ss_pred EEEEcccc
Confidence 99998855
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0094 Score=56.09 Aligned_cols=76 Identities=17% Similarity=0.035 Sum_probs=49.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..++++|+|.|+ |+.|++++..|++.|. +|++++|+.++.+......... ...+.+.. . +.+.+.+.+.
T Consensus 124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~---~~~~~~~~--~---~~~~~~~~~a- 193 (284)
T PRK12549 124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNAR---FPAARATA--G---SDLAAALAAA- 193 (284)
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhh---CCCeEEEe--c---cchHhhhCCC-
Confidence 356789999998 8899999999999997 7999999765443322221111 11222221 1 2233445545
Q ss_pred ccEEEEcc
Q 042406 155 FTHVMHLA 162 (424)
Q Consensus 155 ~d~vi~~A 162 (424)
|+|||+.
T Consensus 194 -DiVInaT 200 (284)
T PRK12549 194 -DGLVHAT 200 (284)
T ss_pred -CEEEECC
Confidence 9999994
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.035 Score=53.10 Aligned_cols=36 Identities=42% Similarity=0.478 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
.+.+++|+||+|.+|..+++.+...|.+|++++++.
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~ 197 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSP 197 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 467899999999999999999999999999998754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.18 Score=47.31 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=92.2
Q ss_pred CeEEEEcC-CChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 80 LTVLVTGA-AGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 80 ~~vlItGg-~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
..|+|.|. +-=|++.+|..|-+||+-|++...+.+.... ... .....+.....|..++..+...+...
T Consensus 4 evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~----ve~--e~~~dI~~L~ld~~~~~~~~~~l~~f~~~L~ 77 (299)
T PF08643_consen 4 EVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKY----VES--EDRPDIRPLWLDDSDPSSIHASLSRFASLLS 77 (299)
T ss_pred eEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHH----HHh--ccCCCCCCcccCCCCCcchHHHHHHHHHHhc
Confidence 46899995 7899999999999999999999875432211 111 12455777777886655444333322
Q ss_pred C--------ccEEEEcccccCc---hh--------hccChHHHHHHHHHHH----HHHHHHHHhcC-CCCeEEEecCCcc
Q 042406 154 A--------FTHVMHLAAQAGV---RY--------AMQNPNSYVESNIAGF----VNLLETCKSSD-PQPAIVWASSSSV 209 (424)
Q Consensus 154 ~--------~d~vi~~Ag~~~~---~~--------~~~~~~~~~~~N~~g~----~~ll~a~~~~~-~~~~~v~~SS~~v 209 (424)
. ..+..++.|+.-. .+ ..+.....++.|+.-. ..++...+... .+.++|.+.-+-.
T Consensus 78 ~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~iil~~Psi~ 157 (299)
T PF08643_consen 78 RPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKIILFNPSIS 157 (299)
T ss_pred CCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeCchh
Confidence 1 2234444443211 11 0111234556566554 44555555521 2235555543222
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEecccc
Q 042406 210 YGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVY 262 (424)
Q Consensus 210 yg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~ 262 (424)
...+. ...++-.....+.+.++..+.++. +++++.++.|++-
T Consensus 158 ssl~~-----------PfhspE~~~~~al~~~~~~LrrEl~~~~I~V~~i~LG~l~ 202 (299)
T PF08643_consen 158 SSLNP-----------PFHSPESIVSSALSSFFTSLRRELRPHNIDVTQIKLGNLD 202 (299)
T ss_pred hccCC-----------CccCHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeeeec
Confidence 21110 122444455556666666666554 5999999999863
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.02 Score=54.95 Aligned_cols=36 Identities=42% Similarity=0.479 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
.+.+|+|+||+|.+|..+++.+...|.+|++++++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~ 173 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD 173 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 577899999999999999999888999999988754
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.019 Score=53.52 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.||++.|+|+.| ||.--++...+-|++|++++++.++.++..+ .-+.+.+..-..|++.++++.+.. |.
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~--------~LGAd~fv~~~~d~d~~~~~~~~~--dg 249 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIK--------SLGADVFVDSTEDPDIMKAIMKTT--DG 249 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHH--------hcCcceeEEecCCHHHHHHHHHhh--cC
Confidence 799999999977 9988888777889999999997643222221 223444433334888898888877 77
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSS 207 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~ 207 (424)
++|++.... .. ....+++.++..| ++|+++-.
T Consensus 250 ~~~~v~~~a----~~-----------~~~~~~~~lk~~G---t~V~vg~p 281 (360)
T KOG0023|consen 250 GIDTVSNLA----EH-----------ALEPLLGLLKVNG---TLVLVGLP 281 (360)
T ss_pred cceeeeecc----cc-----------chHHHHHHhhcCC---EEEEEeCc
Confidence 777664221 00 1123455566554 78888853
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.028 Score=55.60 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
...|+|+|+|+ |.+|+.+++.+.+.|++|++++.+.+..... . .-.++.+|..|.+.+.+++++.++|
T Consensus 10 ~~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~--------~---ad~~~~~~~~d~~~l~~~~~~~~id 77 (395)
T PRK09288 10 PSATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAMQ--------V---AHRSHVIDMLDGDALRAVIEREKPD 77 (395)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchHH--------h---hhheEECCCCCHHHHHHHHHHhCCC
Confidence 35678999997 7899999999999999999999855321110 0 0135678889999999999877789
Q ss_pred EEEEcc
Q 042406 157 HVMHLA 162 (424)
Q Consensus 157 ~vi~~A 162 (424)
.|+-..
T Consensus 78 ~vi~~~ 83 (395)
T PRK09288 78 YIVPEI 83 (395)
T ss_pred EEEEee
Confidence 988643
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.016 Score=55.97 Aligned_cols=68 Identities=18% Similarity=0.128 Sum_probs=43.5
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEE---EEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVL---GLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~---~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+|+|.||+|++|+.|++.|.+++|.++ .+.+..+.... ....+......|+. . ..++++ |+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~---------~~~~~~~~~~~~~~-~----~~~~~~--D~ 64 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRK---------VTFKGKELEVNEAK-I----ESFEGI--DI 64 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCe---------eeeCCeeEEEEeCC-h----HHhcCC--CE
Confidence 489999999999999999999888644 44453221111 01123445555664 1 234544 99
Q ss_pred EEEcccc
Q 042406 158 VMHLAAQ 164 (424)
Q Consensus 158 vi~~Ag~ 164 (424)
||-+++.
T Consensus 65 v~~a~g~ 71 (339)
T TIGR01296 65 ALFSAGG 71 (339)
T ss_pred EEECCCH
Confidence 9999875
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.029 Score=55.10 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF 112 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~ 112 (424)
..++|.|.||.|.+|+.+++.|.+.|+.|++.+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 56789999999999999999999999999999983
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.023 Score=55.10 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=28.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDN 111 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r 111 (424)
+++|+|.||||++|+.+++.|.++ +.+++.+.+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~ 35 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS 35 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence 378999999999999999999987 578777665
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.026 Score=53.46 Aligned_cols=70 Identities=23% Similarity=0.204 Sum_probs=49.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
...+++++|.|. |.+|+.++..|.+.|.+|++.+|+.+.. .... ..+..++ +.+.+.+.+.+.
T Consensus 149 ~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~------~~~~---~~G~~~~-----~~~~l~~~l~~a-- 211 (296)
T PRK08306 149 TIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHL------ARIT---EMGLSPF-----HLSELAEEVGKI-- 211 (296)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHH------HHHH---HcCCeee-----cHHHHHHHhCCC--
Confidence 356899999997 8899999999999999999999964311 1111 1122322 234566777766
Q ss_pred cEEEEcc
Q 042406 156 THVMHLA 162 (424)
Q Consensus 156 d~vi~~A 162 (424)
|+||+++
T Consensus 212 DiVI~t~ 218 (296)
T PRK08306 212 DIIFNTI 218 (296)
T ss_pred CEEEECC
Confidence 9999985
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.022 Score=55.24 Aligned_cols=101 Identities=12% Similarity=0.083 Sum_probs=56.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEE-eCCCCchhhhHHHHHhhhhccCCeEEE-EccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKR-GDGVLGL-DNFNNYYETSLKKARKGLLERAGVFVI-DADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+|.|.||||++|..+++.|.++ +.+++.+ ++..+.... .... .+.+... ..++.+. ...+++++ +|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~-~~~~------~~~l~~~~~~~~~~~-~~~~~~~~--~D 70 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKP-VSEV------HPHLRGLVDLNLEPI-DEEEIAED--AD 70 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCC-hHHh------CccccccCCceeecC-CHHHhhcC--CC
Confidence 57999999999999999999987 5677744 442211111 1000 1111111 1112211 12334344 49
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCccc
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVY 210 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vy 210 (424)
+||-+.... ....++..+.+.|. ++|=.|+..-+
T Consensus 71 vVf~alP~~------------------~s~~~~~~~~~~G~--~VIDlS~~fR~ 104 (346)
T TIGR01850 71 VVFLALPHG------------------VSAELAPELLAAGV--KVIDLSADFRL 104 (346)
T ss_pred EEEECCCch------------------HHHHHHHHHHhCCC--EEEeCChhhhc
Confidence 999887531 23456666666663 78888885443
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.032 Score=41.45 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=29.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
+|+|.|| |++|-.++..|.+.|.+|+++.|...
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHhCcEEEEEeccch
Confidence 4788887 99999999999999999999999654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.088 Score=47.84 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhh--------------H----HHHHhhhhccCCeEEEE
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETS--------------L----KKARKGLLERAGVFVID 137 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~--------------~----~~~~~~~~~~~~v~~~~ 137 (424)
+...+|+|.|. |++|.++++.|++.|. +++++|.+.-..... + ...-.+.+..-+++.+.
T Consensus 9 L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 9 LRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 45678999997 9999999999999996 788887653211100 0 00111122233455555
Q ss_pred ccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 042406 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWA 204 (424)
Q Consensus 138 ~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~ 204 (424)
..++ ++...+++.. ++|+||.+... ...-..+.+.|.+.+.+ +|..
T Consensus 88 ~~i~-~~~~~~l~~~-~~D~VvdaiD~-----------------~~~k~~L~~~c~~~~ip--~I~s 133 (231)
T cd00755 88 EFLT-PDNSEDLLGG-DPDFVVDAIDS-----------------IRAKVALIAYCRKRKIP--VISS 133 (231)
T ss_pred eecC-HhHHHHHhcC-CCCEEEEcCCC-----------------HHHHHHHHHHHHHhCCC--EEEE
Confidence 5554 3445555532 46999987532 11234577888888753 5544
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.069 Score=52.69 Aligned_cols=113 Identities=17% Similarity=0.056 Sum_probs=70.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchh-----------------h-hHHHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYE-----------------T-SLKKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-----------------~-~~~~~~~~~~~~~~v~~~ 136 (424)
.+...+|+|.|+ |++|..+++.|+..|. +++++|.+.-... . ...+...+.+..-+++.+
T Consensus 35 ~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 35 RLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 356678999997 9999999999999996 6777776532110 0 001111122233456667
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg 211 (424)
...++. +...+++.+. |+||.+... .+ .-..+-++|.+.+. -+|+.+..+-+|
T Consensus 114 ~~~~~~-~~~~~~~~~~--D~Vvd~~d~---------~~--------~r~~ln~~~~~~~~--p~v~~~~~g~~g 166 (390)
T PRK07411 114 ETRLSS-ENALDILAPY--DVVVDGTDN---------FP--------TRYLVNDACVLLNK--PNVYGSIFRFEG 166 (390)
T ss_pred ecccCH-HhHHHHHhCC--CEEEECCCC---------HH--------HHHHHHHHHHHcCC--CEEEEEEccCEE
Confidence 666664 4566777866 999988642 11 11234466777775 477776655554
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.018 Score=50.82 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=29.5
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhh
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET 118 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 118 (424)
+...||+|.||..|++.|++.||+|++..|+.++...
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~ 39 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALA 39 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHH
Confidence 4445567999999999999999999999776654333
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.042 Score=51.82 Aligned_cols=38 Identities=16% Similarity=0.208 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNN 114 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~ 114 (424)
..++|+++|.|+ |+.+++++-.|+..|. +|++++|+.+
T Consensus 121 ~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 121 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 357889999997 7779999999999995 8999999754
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.021 Score=48.54 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=30.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN 111 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r 111 (424)
..+||+|+|.|.+..+|+.|+..|.++|+.|++...
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~ 68 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHS 68 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-T
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccC
Confidence 378999999999999999999999999999999876
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.041 Score=52.60 Aligned_cols=38 Identities=21% Similarity=0.129 Sum_probs=33.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchh
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYE 117 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 117 (424)
.++|.|.|+ |-+|..++..|+..|++|++.|++.+...
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~ 44 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEA 44 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 468999997 99999999999999999999999775443
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.078 Score=51.19 Aligned_cols=37 Identities=35% Similarity=0.435 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
..|.+|+|+||+|.+|..+++.+...|.+|++++++.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~ 186 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD 186 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3578999999999999999999999999999988754
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.043 Score=57.40 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=55.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCccE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFTH 157 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d~ 157 (424)
..+|+|.|. |-+|+.+++.|.++|++++++|.+.+..+. ....+..++.+|.+|++.++++ +++ .|.
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~---------~~~~g~~v~~GDat~~~~L~~agi~~--A~~ 467 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDISAVNL---------MRKYGYKVYYGDATQLELLRAAGAEK--AEA 467 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHHHHHH---------HHhCCCeEEEeeCCCHHHHHhcCCcc--CCE
Confidence 457999996 999999999999999999999985432211 1224678999999999988875 343 488
Q ss_pred EEEcc
Q 042406 158 VMHLA 162 (424)
Q Consensus 158 vi~~A 162 (424)
+|-+-
T Consensus 468 vv~~~ 472 (601)
T PRK03659 468 IVITC 472 (601)
T ss_pred EEEEe
Confidence 77653
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.021 Score=53.69 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=47.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
...||+|.|.|.+|.+|+.++..|+++|+.|+++.+... .+.++.++.
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------------------------~l~e~~~~A-- 203 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------------------------DAKALCRQA-- 203 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------------------------CHHHHHhcC--
Confidence 578999999999999999999999999999999976321 245566666
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+||-+.|.
T Consensus 204 DIVIsavg~ 212 (301)
T PRK14194 204 DIVVAAVGR 212 (301)
T ss_pred CEEEEecCC
Confidence 888888765
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.022 Score=56.52 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=53.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.+++++|+|.|+ |.+|+.++..|.+.|. +|++..|+.++..... +... .. .....+.+.+.+.+.
T Consensus 178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La-----~~~~--~~-----~~~~~~~l~~~l~~a- 243 (414)
T PRK13940 178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKIT-----SAFR--NA-----SAHYLSELPQLIKKA- 243 (414)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-----HHhc--CC-----eEecHHHHHHHhccC-
Confidence 467899999998 9999999999999995 7899988643322211 1111 11 223345667778877
Q ss_pred ccEEEEcccccC
Q 042406 155 FTHVMHLAAQAG 166 (424)
Q Consensus 155 ~d~vi~~Ag~~~ 166 (424)
|+||++.+...
T Consensus 244 -DiVI~aT~a~~ 254 (414)
T PRK13940 244 -DIIIAAVNVLE 254 (414)
T ss_pred -CEEEECcCCCC
Confidence 99999987644
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.043 Score=56.99 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=53.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
-+++|.|+ |-+|+.+++.|.++|++|+++|.+++..+. ....+..++.+|.+|++.++++--+ +.|.++
T Consensus 418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~~---------~~~~g~~~i~GD~~~~~~L~~a~i~-~a~~vi 486 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVDE---------LRERGIRAVLGNAANEEIMQLAHLD-CARWLL 486 (558)
T ss_pred CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHHH---------HHHCCCeEEEcCCCCHHHHHhcCcc-ccCEEE
Confidence 46899987 999999999999999999999985432111 1224789999999999888765321 347766
Q ss_pred Ec
Q 042406 160 HL 161 (424)
Q Consensus 160 ~~ 161 (424)
-+
T Consensus 487 v~ 488 (558)
T PRK10669 487 LT 488 (558)
T ss_pred EE
Confidence 44
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.063 Score=47.92 Aligned_cols=72 Identities=22% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+++++|+|.|| |-+|..-++.|++.|++|++++.... +.... .....++.++..+.... .+++.
T Consensus 6 ~l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~---~~l~~----l~~~~~i~~~~~~~~~~-----dl~~~-- 70 (205)
T TIGR01470 6 NLEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE---SELTL----LAEQGGITWLARCFDAD-----ILEGA-- 70 (205)
T ss_pred EcCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC---HHHHH----HHHcCCEEEEeCCCCHH-----HhCCc--
Confidence 367899999998 99999999999999999999986433 11111 11234788888887632 24444
Q ss_pred cEEEEcc
Q 042406 156 THVMHLA 162 (424)
Q Consensus 156 d~vi~~A 162 (424)
+.||-+-
T Consensus 71 ~lVi~at 77 (205)
T TIGR01470 71 FLVIAAT 77 (205)
T ss_pred EEEEECC
Confidence 7777543
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.017 Score=59.21 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=34.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
..++|+++|+|+ |++|+.++..|++.|++|++++|+.+
T Consensus 376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 376 PLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 367899999999 89999999999999999999998643
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.025 Score=55.55 Aligned_cols=67 Identities=24% Similarity=0.211 Sum_probs=52.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+|+|.|| |.+|+.++..+.+.|++|++++.+.+..... -.-.++.+|..|.+.+.++++.+ |+|
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~-----------~ad~~~~~~~~D~~~l~~~a~~~--dvi 67 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAAQ-----------VADEVIVADYDDVAALRELAEQC--DVI 67 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchhH-----------hCceEEecCCCCHHHHHHHHhcC--CEE
Confidence 478999998 8999999999999999999999755421110 01246668999999999999876 876
Q ss_pred E
Q 042406 159 M 159 (424)
Q Consensus 159 i 159 (424)
.
T Consensus 68 t 68 (372)
T PRK06019 68 T 68 (372)
T ss_pred E
Confidence 4
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.053 Score=47.55 Aligned_cols=34 Identities=32% Similarity=0.617 Sum_probs=27.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
|+|.|.| .|++|..++..|++.|++|+++|.+.+
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 7899997 499999999999999999999998654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.04 Score=47.23 Aligned_cols=65 Identities=23% Similarity=0.171 Sum_probs=43.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+|.+.|- |-+|..+++.|++.|++|++.+|+.+..+. ....++.. .++..+++++. |+|
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~---------~~~~g~~~-------~~s~~e~~~~~--dvv 61 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEA---------LAEAGAEV-------ADSPAEAAEQA--DVV 61 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHH---------HHHTTEEE-------ESSHHHHHHHB--SEE
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhh---------hHHhhhhh-------hhhhhhHhhcc--cce
Confidence 478999997 999999999999999999999995432211 11122222 23456677766 988
Q ss_pred EEcc
Q 042406 159 MHLA 162 (424)
Q Consensus 159 i~~A 162 (424)
|-+-
T Consensus 62 i~~v 65 (163)
T PF03446_consen 62 ILCV 65 (163)
T ss_dssp EE-S
T ss_pred Eeec
Confidence 8764
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.024 Score=52.52 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
..++|++.| +|=+|+.++-++-+-|.+|+.+||..+...-. -.-..+..|..|.++++.+.++.+||.
T Consensus 11 ~a~kvmLLG-SGELGKEvaIe~QRLG~eViAVDrY~~APAmq-----------VAhrs~Vi~MlD~~al~avv~rekPd~ 78 (394)
T COG0027 11 QATKVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ-----------VAHRSYVIDMLDGDALRAVVEREKPDY 78 (394)
T ss_pred CCeEEEEec-CCccchHHHHHHHhcCCEEEEecCcCCChhhh-----------hhhheeeeeccCHHHHHHHHHhhCCCe
Confidence 445688888 59999999999999999999999976532110 112346679999999999999999999
Q ss_pred EEEc
Q 042406 158 VMHL 161 (424)
Q Consensus 158 vi~~ 161 (424)
+|--
T Consensus 79 IVpE 82 (394)
T COG0027 79 IVPE 82 (394)
T ss_pred eeeh
Confidence 8854
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.076 Score=56.15 Aligned_cols=107 Identities=17% Similarity=0.104 Sum_probs=70.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchh----------------hh-HHHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYE----------------TS-LKKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~----------------~~-~~~~~~~~~~~~~v~~~ 136 (424)
.+...+|+|.|. | +|..++..|+..|- +++++|.+.-... .. .+..-.+.+..-+|+.+
T Consensus 104 ~L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 104 RLGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 456789999999 7 99999999999994 7888876542110 00 01111122334567777
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
...++ .+.+.++++++ |+||.|.-. +..=..+-++|.+.+.. +|+.|+
T Consensus 182 ~~~i~-~~n~~~~l~~~--DlVvD~~D~-----------------~~~R~~ln~~a~~~~iP--~i~~~~ 229 (722)
T PRK07877 182 TDGLT-EDNVDAFLDGL--DVVVEECDS-----------------LDVKVLLREAARARRIP--VLMATS 229 (722)
T ss_pred eccCC-HHHHHHHhcCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEcC
Confidence 77776 67888899876 999998632 11223455678888764 666664
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.11 Score=56.22 Aligned_cols=113 Identities=11% Similarity=0.002 Sum_probs=70.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCch-----------------hh-hHHHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYY-----------------ET-SLKKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~-----------------~~-~~~~~~~~~~~~~~v~~~ 136 (424)
.+...+|+|.|. |++|..+++.|+..|. +++++|.+.-.. +. ...+.-.+.+..-+++.+
T Consensus 329 kL~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~ 407 (989)
T PRK14852 329 RLLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF 407 (989)
T ss_pred HHhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence 467789999996 9999999999999996 566666543111 00 011111122334456667
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSV 209 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~v 209 (424)
...+ +.+.+.++++++ |+||.+.-... ...-..+.+.|.+.++ -+|+.++.+-
T Consensus 408 ~~~I-~~en~~~fl~~~--DiVVDa~D~~~---------------~~~rr~l~~~c~~~~I--P~I~ag~~G~ 460 (989)
T PRK14852 408 PEGV-AAETIDAFLKDV--DLLVDGIDFFA---------------LDIRRRLFNRALELGI--PVITAGPLGY 460 (989)
T ss_pred ecCC-CHHHHHHHhhCC--CEEEECCCCcc---------------HHHHHHHHHHHHHcCC--CEEEeecccc
Confidence 6666 456788888877 99998653211 1112345667777776 4777666443
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.044 Score=53.24 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=29.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFN 113 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~ 113 (424)
+++|+|+||+|++|+.|++.|.++.. +++.+.++.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~ 38 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE 38 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh
Confidence 47899999999999999999998765 888875543
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.033 Score=46.34 Aligned_cols=58 Identities=24% Similarity=0.278 Sum_probs=47.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
+.+||+|+|.|.+.-+|+.|+..|.++|..|++.+++.. ++++..++.
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~------------------------------~l~~~v~~A-- 72 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI------------------------------QLQSKVHDA-- 72 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc------------------------------CHHHHHhhC--
Confidence 578999999999999999999999999999999976221 244566666
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+||-..|..
T Consensus 73 DIVvsAtg~~ 82 (140)
T cd05212 73 DVVVVGSPKP 82 (140)
T ss_pred CEEEEecCCC
Confidence 9999887753
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.035 Score=52.25 Aligned_cols=77 Identities=14% Similarity=0.074 Sum_probs=49.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.++++++|.|+ |+.|+.++..|++.|. +|+++.|+.++.+....... ....+ . .+...+++...+.+.
T Consensus 123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~----~~~~~--~--~~~~~~~~~~~~~~~-- 191 (282)
T TIGR01809 123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGV----QVGVI--T--RLEGDSGGLAIEKAA-- 191 (282)
T ss_pred cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhh----hcCcc--e--eccchhhhhhcccCC--
Confidence 56889999997 9999999999999996 79999997554333222111 00111 1 111112333444444
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+|||+...
T Consensus 192 DiVInaTp~ 200 (282)
T TIGR01809 192 EVLVSTVPA 200 (282)
T ss_pred CEEEECCCC
Confidence 999999765
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.093 Score=50.08 Aligned_cols=68 Identities=19% Similarity=0.295 Sum_probs=51.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.+|+|.|.|- |.||+.+++.|...|.+|++.+|..+.. .++..+ ...+++.+++++.
T Consensus 133 ~l~g~tvgIvG~-G~IG~~vA~~l~afG~~V~~~~~~~~~~--------------~~~~~~----~~~~~l~e~l~~a-- 191 (312)
T PRK15469 133 HREDFTIGILGA-GVLGSKVAQSLQTWGFPLRCWSRSRKSW--------------PGVQSF----AGREELSAFLSQT-- 191 (312)
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCC--------------CCceee----cccccHHHHHhcC--
Confidence 568999999996 9999999999999999999999843210 111111 1345688899888
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+|+.+...
T Consensus 192 Dvvv~~lPl 200 (312)
T PRK15469 192 RVLINLLPN 200 (312)
T ss_pred CEEEECCCC
Confidence 999987643
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.18 Score=53.09 Aligned_cols=109 Identities=15% Similarity=0.062 Sum_probs=68.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCch-----------------hhh-HHHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYY-----------------ETS-LKKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~-----------------~~~-~~~~~~~~~~~~~v~~~ 136 (424)
.+.+.+|+|.|. |++|..++..|+..|. +++++|.+.-.. +.. ....-.+.+..-+++.+
T Consensus 40 kL~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~ 118 (679)
T PRK14851 40 RLAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF 118 (679)
T ss_pred HHhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 456788999996 9999999999999996 566666543111 000 01111122334567788
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
...++ .+.+.++++++ |+||.+.-... +..-..+.+.|.+.++. +|+.+
T Consensus 119 ~~~i~-~~n~~~~l~~~--DvVid~~D~~~---------------~~~r~~l~~~c~~~~iP--~i~~g 167 (679)
T PRK14851 119 PAGIN-ADNMDAFLDGV--DVVLDGLDFFQ---------------FEIRRTLFNMAREKGIP--VITAG 167 (679)
T ss_pred ecCCC-hHHHHHHHhCC--CEEEECCCCCc---------------HHHHHHHHHHHHHCCCC--EEEee
Confidence 78886 46678888876 99997753211 11112456678887763 55544
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.041 Score=52.51 Aligned_cols=67 Identities=24% Similarity=0.194 Sum_probs=53.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+|.|.|| |.+|+.++.+-.+-|++|++++-+++..... -.-..+.++..|.++++++.+.+ |+|
T Consensus 1 ~~tvgIlGG-GQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~-----------va~~~i~~~~dD~~al~ela~~~--DVi 66 (375)
T COG0026 1 MKTVGILGG-GQLGRMMALAAARLGIKVIVLDPDADAPAAQ-----------VADRVIVAAYDDPEALRELAAKC--DVI 66 (375)
T ss_pred CCeEEEEcC-cHHHHHHHHHHHhcCCEEEEecCCCCCchhh-----------cccceeecCCCCHHHHHHHHhhC--CEE
Confidence 478999998 9999999999999999999999765532211 12245677888999999999988 776
Q ss_pred E
Q 042406 159 M 159 (424)
Q Consensus 159 i 159 (424)
-
T Consensus 67 T 67 (375)
T COG0026 67 T 67 (375)
T ss_pred E
Confidence 4
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.071 Score=51.42 Aligned_cols=69 Identities=19% Similarity=0.136 Sum_probs=49.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..+.||+|.|.|- |-||+.+++.|...|.+|++.+|+.... . .. ..++. ..++.+++++.
T Consensus 146 ~~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~------~-~~---~~~~~--------~~~l~ell~~a- 205 (333)
T PRK13243 146 YDVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKPE------A-EK---ELGAE--------YRPLEELLRES- 205 (333)
T ss_pred cCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCChh------h-HH---HcCCE--------ecCHHHHHhhC-
Confidence 4689999999997 9999999999999999999999854311 0 00 01111 12466778877
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
|+|+.+.-.
T Consensus 206 -DiV~l~lP~ 214 (333)
T PRK13243 206 -DFVSLHVPL 214 (333)
T ss_pred -CEEEEeCCC
Confidence 999887643
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.12 Score=49.47 Aligned_cols=74 Identities=22% Similarity=0.254 Sum_probs=51.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
-.|++|+|+|.. ++|-..++.+...|++|++++|+.++.+..++ + ....++ |-+|++.++++.+. +|
T Consensus 165 ~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~------l--GAd~~i--~~~~~~~~~~~~~~--~d 231 (339)
T COG1064 165 KPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKK------L--GADHVI--NSSDSDALEAVKEI--AD 231 (339)
T ss_pred CCCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHH------h--CCcEEE--EcCCchhhHHhHhh--Cc
Confidence 358899999995 99999998888899999999997654322211 1 122333 32366666655554 59
Q ss_pred EEEEccc
Q 042406 157 HVMHLAA 163 (424)
Q Consensus 157 ~vi~~Ag 163 (424)
++|.+++
T Consensus 232 ~ii~tv~ 238 (339)
T COG1064 232 AIIDTVG 238 (339)
T ss_pred EEEECCC
Confidence 9999987
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.11 Score=49.84 Aligned_cols=36 Identities=44% Similarity=0.537 Sum_probs=32.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
.+.+|+|+||+|.+|..+++.+...|.+|++++++.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~ 178 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSD 178 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578899999999999999999999999999888754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.023 Score=54.91 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCe
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDG 105 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~ 105 (424)
..++|.|.||||++|..|++.|.+++|.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP 33 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFP 33 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCC
Confidence 4568999999999999999999998873
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.046 Score=47.73 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=52.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-HHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-KSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~v~~~~~~~~ 154 (424)
.++||+|+|.|-+.-+|+-|+..|+++|+.|++++.+....-.. ......-.....| ...+.+.+++.
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~----------~~~~~hs~t~~~~~~~~l~~~~~~A- 127 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTR----------GESIRHEKHHVTDEEAMTLDCLSQS- 127 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCccccccc----------ccccccccccccchhhHHHHHhhhC-
Confidence 58999999999999999999999999999999997532111000 0000000111123 22466777877
Q ss_pred ccEEEEcccccC
Q 042406 155 FTHVMHLAAQAG 166 (424)
Q Consensus 155 ~d~vi~~Ag~~~ 166 (424)
|+||-..|...
T Consensus 128 -DIVIsAvG~~~ 138 (197)
T cd01079 128 -DVVITGVPSPN 138 (197)
T ss_pred -CEEEEccCCCC
Confidence 99999888644
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.17 Score=47.37 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=67.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchh--------------hhH----HHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYE--------------TSL----KKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~--------------~~~----~~~~~~~~~~~~v~~~ 136 (424)
.+...+|||.|. |++|.++++.|+..|. +|+++|...-... ..+ .+...+.+..-+++.+
T Consensus 16 kL~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~ 94 (286)
T cd01491 16 KLQKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVS 94 (286)
T ss_pred HHhcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 356678999997 9999999999999996 6888876531110 000 1111122233445555
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
..++. .+.+.+. |+||.+... .+. -..+-++|++.+. .||...+.+.+|.
T Consensus 95 ~~~~~-----~~~l~~f--dvVV~~~~~---------~~~--------~~~in~~c~~~~i--pfI~a~~~G~~G~ 144 (286)
T cd01491 95 TGPLT-----TDELLKF--QVVVLTDAS---------LED--------QLKINEFCHSPGI--KFISADTRGLFGS 144 (286)
T ss_pred eccCC-----HHHHhcC--CEEEEecCC---------HHH--------HHHHHHHHHHcCC--EEEEEeccccEEE
Confidence 54432 2455544 888876431 111 2334567888775 6999998888774
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.038 Score=52.18 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=33.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhh
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET 118 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 118 (424)
++|.|.|+ |.+|..++..|++.|++|++++++.+..+.
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~ 39 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQEQLES 39 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHHHHHH
Confidence 57999998 999999999999999999999998765444
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.064 Score=51.20 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
++|+|.|.|+ |-+|..++..|.+.|++|++++|+.
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4678999986 9999999999999999999999853
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.029 Score=56.17 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=32.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
|+|.|.||+|.+|..+++.|.+.|++|++++|+.+
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~ 35 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPK 35 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 57999999999999999999999999999998643
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.039 Score=54.96 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=50.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
...+++|+|.|+ |.+|..+++.|.+.| .+|++++|+.++..... ... +...+ +.+.+.+.+.+.
T Consensus 177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la-----~~~---g~~~i-----~~~~l~~~l~~a- 241 (417)
T TIGR01035 177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLA-----KEL---GGEAV-----KFEDLEEYLAEA- 241 (417)
T ss_pred CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-----HHc---CCeEe-----eHHHHHHHHhhC-
Confidence 367899999997 999999999999999 78999999643221111 111 11122 234566777766
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
|+||.+.+.
T Consensus 242 -DvVi~aT~s 250 (417)
T TIGR01035 242 -DIVISSTGA 250 (417)
T ss_pred -CEEEECCCC
Confidence 999998764
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.059 Score=45.71 Aligned_cols=71 Identities=20% Similarity=0.167 Sum_probs=44.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.||+++|+|- |.+|+-+|+.|...|.+|++.+.++-.. ... ...+.++. .+++++...
T Consensus 20 ~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~DPi~a------lqA---~~dGf~v~--------~~~~a~~~a-- 79 (162)
T PF00670_consen 20 MLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEIDPIRA------LQA---AMDGFEVM--------TLEEALRDA-- 79 (162)
T ss_dssp --TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHH------HHH---HHTT-EEE---------HHHHTTT---
T ss_pred eeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEECChHHH------HHh---hhcCcEec--------CHHHHHhhC--
Confidence 478999999996 9999999999999999999999843211 111 11333333 255677766
Q ss_pred cEEEEcccccC
Q 042406 156 THVMHLAAQAG 166 (424)
Q Consensus 156 d~vi~~Ag~~~ 166 (424)
|++|.+.|..+
T Consensus 80 di~vtaTG~~~ 90 (162)
T PF00670_consen 80 DIFVTATGNKD 90 (162)
T ss_dssp SEEEE-SSSSS
T ss_pred CEEEECCCCcc
Confidence 99998877643
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.068 Score=50.24 Aligned_cols=41 Identities=27% Similarity=0.211 Sum_probs=34.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhh
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYET 118 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~ 118 (424)
.++|+++|.|+ |+.|++++-.|++.|. +|++++|+.++.+.
T Consensus 125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~ 166 (283)
T PRK14027 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQA 166 (283)
T ss_pred cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHH
Confidence 56789999998 9999999999999996 79999997654433
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.057 Score=52.39 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=53.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..+.||++.|.|- |-||+.+++.|...|.+|++.+|+...... .... .....+..+........++++++.+.
T Consensus 155 ~~l~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~L~ell~~a- 227 (347)
T PLN02928 155 DTLFGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRSWTSEPE----DGLL-IPNGDVDDLVDEKGGHEDIYEFAGEA- 227 (347)
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCCChhhh----hhhc-cccccccccccccCcccCHHHHHhhC-
Confidence 3588999999997 999999999999999999999985321000 0000 00001111100111445788899988
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
|+|+.+...
T Consensus 228 -DiVvl~lPl 236 (347)
T PLN02928 228 -DIVVLCCTL 236 (347)
T ss_pred -CEEEECCCC
Confidence 999988754
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.04 Score=54.22 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=54.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMH 160 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~ 160 (424)
+|+|.|+ |.+|..+++.+.+.|++|++++.+.+.... . -.-.++..|..|.+.+.++++..++|.|+-
T Consensus 1 kililG~-g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~-----~------~ad~~~~~~~~d~~~l~~~~~~~~id~v~~ 68 (380)
T TIGR01142 1 RVLLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAM-----Q------VAHRSYVINMLDGDALRAVIEREKPDYIVP 68 (380)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchh-----h------hCceEEEcCCCCHHHHHHHHHHhCCCEEEe
Confidence 4899996 999999999999999999999986532111 0 011456678999999999999777899986
Q ss_pred ccc
Q 042406 161 LAA 163 (424)
Q Consensus 161 ~Ag 163 (424)
...
T Consensus 69 ~~e 71 (380)
T TIGR01142 69 EIE 71 (380)
T ss_pred ccC
Confidence 543
|
This enzyme is an alternative to PurN (TIGR00639) |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.1 Score=48.91 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-HHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-KSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~v~~~~~~~~~ 155 (424)
.+.+|+|.|+ |.||..+++.+...|.+ |++++++.++.+ . ...+ +... ..|..+ .+.+.+......+
T Consensus 120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~-----~-a~~~---Ga~~-~i~~~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRRE-----L-ALSF---GATA-LAEPEVLAERQGGLQNGRGV 188 (280)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHH-----H-HHHc---CCcE-ecCchhhHHHHHHHhCCCCC
Confidence 5778999986 89999999988889986 777766433211 1 1111 1211 112222 2333444333357
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|++|.+.|.
T Consensus 189 d~vid~~G~ 197 (280)
T TIGR03366 189 DVALEFSGA 197 (280)
T ss_pred CEEEECCCC
Confidence 999999874
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.039 Score=51.42 Aligned_cols=58 Identities=26% Similarity=0.293 Sum_probs=47.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
...||+++|+|-+..+|+-|+..|+++|+.|++..+.. ..+.+..++.
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------------------------~~l~~~~~~A-- 203 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------------------------KNLRHHVRNA-- 203 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------------------------CCHHHHHhhC--
Confidence 57899999999999999999999999999999997621 1255666666
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+||..+|..
T Consensus 204 DIvi~avG~p 213 (285)
T PRK10792 204 DLLVVAVGKP 213 (285)
T ss_pred CEEEEcCCCc
Confidence 9999988763
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.042 Score=54.89 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
..+++|+|.|+ |.+|..+++.|...|. +|++++|+.++.... ....+ . +..+.+.+.+.+.+.
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~l-----a~~~g---~-----~~~~~~~~~~~l~~a-- 243 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEEL-----AEEFG---G-----EAIPLDELPEALAEA-- 243 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH-----HHHcC---C-----cEeeHHHHHHHhccC--
Confidence 67899999997 9999999999999997 799999854322111 11111 1 222335566666665
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+||.+.+..
T Consensus 244 DvVI~aT~s~ 253 (423)
T PRK00045 244 DIVISSTGAP 253 (423)
T ss_pred CEEEECCCCC
Confidence 9999987653
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.058 Score=48.02 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=33.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF 112 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~ 112 (424)
.+++|+|+|.|| |-+|...++.|++.|++|+++++.
T Consensus 7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCC
Confidence 468899999998 999999999999999999999763
|
|
| >KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.041 Score=53.82 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=29.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFN 113 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~ 113 (424)
.+-+|||+|| |+||-.|.+.|+-.|. +|.++|-..
T Consensus 11 ~~~riLvVGa-GGIGCELLKnLal~gf~~IhiIDlDT 46 (603)
T KOG2013|consen 11 KSGRILVVGA-GGIGCELLKNLALTGFEEIHIIDLDT 46 (603)
T ss_pred ccCeEEEEec-CcccHHHHHHHHHhcCCeeEEEeccc
Confidence 4567999998 9999999999999996 688887644
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.048 Score=52.08 Aligned_cols=72 Identities=22% Similarity=0.186 Sum_probs=49.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
..+++|+|.|+ |.+|..+++.|...| .+|++++|+.++..... ... +.. ..+.+.+.+.+.+.
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la-----~~~---g~~-----~~~~~~~~~~l~~a-- 239 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELA-----KEL---GGN-----AVPLDELLELLNEA-- 239 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH-----HHc---CCe-----EEeHHHHHHHHhcC--
Confidence 57899999997 999999999999876 68999998543221111 111 112 22334566667766
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+||.+.+.
T Consensus 240 DvVi~at~~ 248 (311)
T cd05213 240 DVVISATGA 248 (311)
T ss_pred CEEEECCCC
Confidence 999999875
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.1 Score=49.16 Aligned_cols=39 Identities=28% Similarity=0.280 Sum_probs=33.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhh
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET 118 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 118 (424)
.++|.|.|+ |.+|..++..|++.|++|++++++.+..+.
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~l~~ 41 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISDEALEK 41 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 367999987 999999999999999999999997765443
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.059 Score=50.70 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEe
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLD 110 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~ 110 (424)
...||+|+|.|-++.+|+.++..|+++|+.|+++.
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 47899999999999999999999999999999995
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.051 Score=50.80 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=36.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhh
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETS 119 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~ 119 (424)
..++++++|.|| |+.+++++..|++.| .+|+++.|+.++.++.
T Consensus 123 ~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~L 166 (283)
T COG0169 123 DVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEEL 166 (283)
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence 446899999998 999999999999999 5899999977654443
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.053 Score=51.12 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=35.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhH
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSL 120 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 120 (424)
.++|.|.|+ |.+|..++..|+..|++|++.|++.+..+...
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~ 45 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATAGR 45 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 357999997 99999999999999999999999877655433
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.095 Score=51.39 Aligned_cols=71 Identities=23% Similarity=0.169 Sum_probs=50.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..+.||+|.|.|. |-||+.+++.|...|.+|++.+|...... ... ..++. -..++++++++.
T Consensus 188 ~~L~gktVGIvG~-G~IG~~vA~~l~~fG~~V~~~dr~~~~~~-----~~~----~~g~~-------~~~~l~ell~~a- 249 (385)
T PRK07574 188 YDLEGMTVGIVGA-GRIGLAVLRRLKPFDVKLHYTDRHRLPEE-----VEQ----ELGLT-------YHVSFDSLVSVC- 249 (385)
T ss_pred eecCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCCCchh-----hHh----hcCce-------ecCCHHHHhhcC-
Confidence 4688999999997 99999999999999999999998542110 000 01221 123477888877
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
|+|+.+...
T Consensus 250 -DvV~l~lPl 258 (385)
T PRK07574 250 -DVVTIHCPL 258 (385)
T ss_pred -CEEEEcCCC
Confidence 999887643
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.15 Score=49.21 Aligned_cols=76 Identities=21% Similarity=0.198 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC--HHHHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND--KSLLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~v~~~~~~~~ 154 (424)
.+.+|+|+|+ |.+|..+++.+...|.+ |++++++.++.+. . ..+ ++.. ..|..+ .+.+.+...+.+
T Consensus 163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~-----~-~~~---ga~~-~i~~~~~~~~~~~~~~~~~~ 231 (339)
T cd08239 163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLEL-----A-KAL---GADF-VINSGQDDVQEIRELTSGAG 231 (339)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH-----H-HHh---CCCE-EEcCCcchHHHHHHHhCCCC
Confidence 4789999986 99999999999999998 9988875432111 1 111 1111 123333 344545544446
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+||.+.|.
T Consensus 232 ~d~vid~~g~ 241 (339)
T cd08239 232 ADVAIECSGN 241 (339)
T ss_pred CCEEEECCCC
Confidence 7999999874
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.22 Score=45.72 Aligned_cols=93 Identities=13% Similarity=-0.004 Sum_probs=69.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+++|||.||| .=|+.|++.|.+.|++|++..-..-.. .....+.++.+-+.|.+.+.+++++.+++.|
T Consensus 2 ~~~IlvlgGT-~egr~la~~L~~~g~~v~~Svat~~g~-----------~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~V 69 (248)
T PRK08057 2 MPRILLLGGT-SEARALARALAAAGVDIVLSLAGRTGG-----------PADLPGPVRVGGFGGAEGLAAYLREEGIDLV 69 (248)
T ss_pred CceEEEEech-HHHHHHHHHHHhCCCeEEEEEccCCCC-----------cccCCceEEECCCCCHHHHHHHHHHCCCCEE
Confidence 4679999996 469999999999999887765432110 2234778888898899999999999899999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCC
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~ 198 (424)
|...=+ ++ ..-+.++.++|++.+..
T Consensus 70 IDATHP----fA-----------~~is~~a~~ac~~~~ip 94 (248)
T PRK08057 70 IDATHP----YA-----------AQISANAAAACRALGIP 94 (248)
T ss_pred EECCCc----cH-----------HHHHHHHHHHHHHhCCc
Confidence 986422 11 12357889999999875
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.056 Score=53.56 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
...|++|+|+|. |.||+.+++.|...|.+|++.+++..
T Consensus 209 ~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 209 LIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 358999999997 99999999999999999999998654
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.075 Score=49.57 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=46.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
...||+|+|.|.+..+|+.++..|+++|+.|+++.... ..+.+..++.
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------------------------~~l~~~~~~A-- 201 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------------------------KDLSFYTQNA-- 201 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------------------------HHHHHHHHhC--
Confidence 56899999999999999999999999999999875311 1244566666
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+||-.+|..
T Consensus 202 DIvV~AvG~p 211 (285)
T PRK14191 202 DIVCVGVGKP 211 (285)
T ss_pred CEEEEecCCC
Confidence 9999888753
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.052 Score=50.65 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=46.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
...||+|+|.|.++.+|+.|+..|.++|+.|++..... ..+.+.+++.
T Consensus 155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------------------------~~l~~~~~~A-- 202 (285)
T PRK14189 155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------------------------RDLAAHTRQA-- 202 (285)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------------------------CCHHHHhhhC--
Confidence 57899999999999999999999999999999875411 1244566666
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+||-.+|.
T Consensus 203 DIVV~avG~ 211 (285)
T PRK14189 203 DIVVAAVGK 211 (285)
T ss_pred CEEEEcCCC
Confidence 999988874
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.1 Score=53.13 Aligned_cols=76 Identities=24% Similarity=0.179 Sum_probs=51.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.++++|+|.|+ |++|..+++.|+++|++|+++++....... .....+...++.++..+-.. ... .+|
T Consensus 14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~----~~~~~l~~~gv~~~~~~~~~------~~~--~~D 80 (480)
T PRK01438 14 WQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHR----ALAAILEALGATVRLGPGPT------LPE--DTD 80 (480)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhH----HHHHHHHHcCCEEEECCCcc------ccC--CCC
Confidence 56789999997 999999999999999999999875432111 11111233467776554322 112 459
Q ss_pred EEEEccccc
Q 042406 157 HVMHLAAQA 165 (424)
Q Consensus 157 ~vi~~Ag~~ 165 (424)
.||...|+.
T Consensus 81 ~Vv~s~Gi~ 89 (480)
T PRK01438 81 LVVTSPGWR 89 (480)
T ss_pred EEEECCCcC
Confidence 999988874
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.24 Score=45.50 Aligned_cols=36 Identities=39% Similarity=0.433 Sum_probs=31.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
.++.+|+|+|+++ +|..+++.+...|.+|++++++.
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCH
Confidence 3567899999988 99999999999999999998854
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.073 Score=50.50 Aligned_cols=97 Identities=15% Similarity=0.134 Sum_probs=63.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..+.||+|.|.|- |-||+.+++.|...|.+|++.+|+... .++... ..++++++.+.
T Consensus 118 ~~L~gktvgIiG~-G~IG~~vA~~l~afG~~V~~~~r~~~~---------------~~~~~~------~~~l~ell~~a- 174 (303)
T PRK06436 118 KLLYNKSLGILGY-GGIGRRVALLAKAFGMNIYAYTRSYVN---------------DGISSI------YMEPEDIMKKS- 174 (303)
T ss_pred CCCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcc---------------cCcccc------cCCHHHHHhhC-
Confidence 4689999999996 999999999888889999999984210 111100 12467788877
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCccc
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVY 210 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vy 210 (424)
|+|+.+....... .. +. ....++.+++ +..||.+|...+.
T Consensus 175 -Div~~~lp~t~~T------~~-----li-~~~~l~~mk~---ga~lIN~sRG~~v 214 (303)
T PRK06436 175 -DFVLISLPLTDET------RG-----MI-NSKMLSLFRK---GLAIINVARADVV 214 (303)
T ss_pred -CEEEECCCCCchh------hc-----Cc-CHHHHhcCCC---CeEEEECCCcccc
Confidence 9999887542210 00 11 1334555554 2378888876664
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.14 Score=53.86 Aligned_cols=73 Identities=23% Similarity=0.225 Sum_probs=54.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
.++|+|.|. |-+|+.+++.|.++|.+++++|.+.+..+. ....+..++.+|.+|++.++++=-+ +.|.|
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~---------~~~~g~~v~~GDat~~~~L~~agi~-~A~~v 468 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIET---------LRKFGMKVFYGDATRMDLLESAGAA-KAEVL 468 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHH---------HHhcCCeEEEEeCCCHHHHHhcCCC-cCCEE
Confidence 467999997 999999999999999999999985542221 1224678999999999987764211 44877
Q ss_pred EEcc
Q 042406 159 MHLA 162 (424)
Q Consensus 159 i~~A 162 (424)
|-+-
T Consensus 469 vv~~ 472 (621)
T PRK03562 469 INAI 472 (621)
T ss_pred EEEe
Confidence 7654
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.32 Score=48.32 Aligned_cols=109 Identities=14% Similarity=0.163 Sum_probs=63.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC------eEEEEeCCCCchhh--------------hH----HHHHhhhhccCCeEEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD------GVLGLDNFNNYYET--------------SL----KKARKGLLERAGVFVI 136 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~------~V~~~~r~~~~~~~--------------~~----~~~~~~~~~~~~v~~~ 136 (424)
+|+|.|+ |+||..+++.|+..|. +++++|.+.-.... .+ .....+....-+++.+
T Consensus 1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 4899996 9999999999999997 78888875421110 00 0011112233455666
Q ss_pred EccCCCH-HH-H-HHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 042406 137 DADINDK-SL-L-DKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 137 ~~Dl~d~-~~-v-~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg 211 (424)
...+... +. + .+++++. |+||++.- |+..-..+-+.|...+. -+|..++.+.+|
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~--DvVi~alD-----------------n~~aR~~vn~~C~~~~i--Pli~~gt~G~~G 136 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKL--DGVANALD-----------------NVDARMYVDRRCVYYRK--PLLESGTLGTKG 136 (435)
T ss_pred ecccChhhhhhhhHHHhcCC--CEEEECCC-----------------CHHHHHHHHHHHHHhCC--CEEEEeccccee
Confidence 6555421 11 1 2445544 88887642 22233455667777765 477777666554
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.28 Score=46.15 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=49.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchh----------hh----HHH----HHhhhhccCCeEEEEccCC
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYE----------TS----LKK----ARKGLLERAGVFVIDADIN 141 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~----------~~----~~~----~~~~~~~~~~v~~~~~Dl~ 141 (424)
+|+|.|+ |++|.++++.|+..|. +++++|.+.-... .. +.+ .-.+....-+++.+..++.
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 4899996 9999999999999996 6777775432110 00 000 1111223346777778887
Q ss_pred CHHHHHHHhhccCccEEEEcc
Q 042406 142 DKSLLDKIFNVVAFTHVMHLA 162 (424)
Q Consensus 142 d~~~v~~~~~~~~~d~vi~~A 162 (424)
+.+ .+++++. |+||.+.
T Consensus 80 ~~~--~~f~~~f--dvVi~al 96 (291)
T cd01488 80 DKD--EEFYRQF--NIIICGL 96 (291)
T ss_pred chh--HHHhcCC--CEEEECC
Confidence 643 4667755 9999864
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.058 Score=50.32 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=47.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
...||+|+|+|.+..+|+-|+..|.++|+.|++...... .+.+..++.
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~------------------------------~l~~~~~~A-- 208 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD------------------------------DLKKYTLDA-- 208 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC------------------------------CHHHHHhhC--
Confidence 568999999999999999999999999999999874211 134555656
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+||..+|..
T Consensus 209 DIvv~AvG~p 218 (287)
T PRK14176 209 DILVVATGVK 218 (287)
T ss_pred CEEEEccCCc
Confidence 9999988864
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.16 Score=49.11 Aligned_cols=75 Identities=19% Similarity=0.217 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-Cc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-AF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~~ 155 (424)
.+.+|+|+|+ |.+|...++.+...|. +|++++++.++.+.. ..+ +... ..|..+. .+.+..+.. .+
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a------~~l---Ga~~-vi~~~~~-~~~~~~~~~g~~ 236 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA------REM---GADK-LVNPQND-DLDHYKAEKGYF 236 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH------HHc---CCcE-EecCCcc-cHHHHhccCCCC
Confidence 4778999986 9999999999989998 688888754322111 111 2221 1233332 233333221 47
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|++|.+.|.
T Consensus 237 D~vid~~G~ 245 (343)
T PRK09880 237 DVSFEVSGH 245 (343)
T ss_pred CEEEECCCC
Confidence 999999874
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.076 Score=52.08 Aligned_cols=75 Identities=24% Similarity=0.210 Sum_probs=56.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
+++++++||.|+ |-+|.-++++|.++| .+|+++.|+.++......+. + +++...+.+.+.+.+.
T Consensus 175 ~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~--------~-----~~~~~l~el~~~l~~~- 239 (414)
T COG0373 175 SLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKL--------G-----AEAVALEELLEALAEA- 239 (414)
T ss_pred ccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHh--------C-----CeeecHHHHHHhhhhC-
Confidence 378999999998 999999999999999 68888888554333222111 1 4566677788888877
Q ss_pred ccEEEEcccccC
Q 042406 155 FTHVMHLAAQAG 166 (424)
Q Consensus 155 ~d~vi~~Ag~~~ 166 (424)
|+||-+-|...
T Consensus 240 -DvVissTsa~~ 250 (414)
T COG0373 240 -DVVISSTSAPH 250 (414)
T ss_pred -CEEEEecCCCc
Confidence 99999877543
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.082 Score=52.22 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=48.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
...|++|+|.|+ |.||..+++.+...|.+|++++++..+..... ..++..+ +. ++++.+.
T Consensus 199 ~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~---------~~G~~~~-----~~---~e~v~~a-- 258 (413)
T cd00401 199 MIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQAA---------MEGYEVM-----TM---EEAVKEG-- 258 (413)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHHH---------hcCCEEc-----cH---HHHHcCC--
Confidence 468999999998 89999999999999999999988654322111 1233222 11 2455555
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+||.+.|.
T Consensus 259 DVVI~atG~ 267 (413)
T cd00401 259 DIFVTTTGN 267 (413)
T ss_pred CEEEECCCC
Confidence 999998764
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.1 Score=50.65 Aligned_cols=36 Identities=33% Similarity=0.395 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
.|.+|+|+||+|.+|..+++.+...|.+|++++++.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~ 193 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS 193 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 578999999999999999999999999999887743
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.057 Score=54.75 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
..++|+++|+|+ |++|+.++..|++.|++|++.+|+.+
T Consensus 329 ~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~ 366 (477)
T PRK09310 329 PLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKA 366 (477)
T ss_pred CcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 457889999996 89999999999999999999988643
|
|
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.35 Score=46.21 Aligned_cols=37 Identities=38% Similarity=0.354 Sum_probs=32.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
.++.+|+|.|++|.+|..+++.+.+.|.+|++++++.
T Consensus 138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~ 174 (329)
T cd08250 138 KSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSD 174 (329)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcH
Confidence 3578899999999999999999999999999988754
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.098 Score=49.45 Aligned_cols=77 Identities=19% Similarity=0.263 Sum_probs=49.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH---HHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL---LDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---v~~~~~~~~ 154 (424)
.+++|+|+|++|.+|..+++.+...|..|++++++.+..+. .. . . ++. ...|..+.+. +.+...+..
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~----~~-~-~---g~~-~~~~~~~~~~~~~~~~~~~~~~ 208 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEA----CR-A-L---GAD-VAINYRTEDFAEEVKEATGGRG 208 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHH----HH-H-c---CCC-EEEeCCchhHHHHHHHHhCCCC
Confidence 56789999999999999999999999999999885432211 11 1 1 111 1233333332 333333335
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|.+++++|.
T Consensus 209 ~d~vi~~~g~ 218 (323)
T cd05276 209 VDVILDMVGG 218 (323)
T ss_pred eEEEEECCch
Confidence 7999999873
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.13 Score=49.77 Aligned_cols=35 Identities=31% Similarity=0.362 Sum_probs=31.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFN 113 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~ 113 (424)
+.+|+|+||+|.+|..+++.+...|. +|++++++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~ 190 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSD 190 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence 47899999999999999998888998 799988754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.23 Score=47.46 Aligned_cols=37 Identities=38% Similarity=0.327 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
.+.+|+|.|++|.+|..+++.+...|.+|++++++.+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~ 182 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKAD 182 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHH
Confidence 3578999999999999999999999999999988653
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.12 Score=52.57 Aligned_cols=37 Identities=30% Similarity=0.232 Sum_probs=32.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
..+.+|+|+|+ |-+|...+..+...|++|+++|++.+
T Consensus 163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA~V~a~D~~~~ 199 (509)
T PRK09424 163 VPPAKVLVIGA-GVAGLAAIGAAGSLGAIVRAFDTRPE 199 (509)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 35789999998 99999999999999999999998553
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.079 Score=50.20 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=23.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD 104 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~ 104 (424)
+++|.|.||||.+|+.+++.|.++..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f 26 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF 26 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC
Confidence 46899999999999999999999864
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.28 Score=46.70 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCe-EEEEccCCC---HHHHHHHhhcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGV-FVIDADIND---KSLLDKIFNVV 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d---~~~v~~~~~~~ 153 (424)
.+.+|+|.||+|.+|..+++.+.+.|..|+++.++.+.... .+ . .++ .++ +..+ .+.+.+...+.
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~----~~-~----~g~~~~~--~~~~~~~~~~i~~~~~~~ 207 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAE----LR-A----LGIGPVV--STEQPGWQDKVREAAGGA 207 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHH----HH-h----cCCCEEE--cCCCchHHHHHHHHhCCC
Confidence 56789999999999999999999999999988775432111 11 1 122 222 2222 23344455444
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
++|+|+++.|.
T Consensus 208 ~~d~v~d~~g~ 218 (324)
T cd08292 208 PISVALDSVGG 218 (324)
T ss_pred CCcEEEECCCC
Confidence 67999998873
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.062 Score=50.11 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=32.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEe
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLD 110 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~ 110 (424)
...||+|.|.|.+|.+|+.++..|+++|+.|+++.
T Consensus 155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~ 189 (284)
T PRK14179 155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH 189 (284)
T ss_pred CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC
Confidence 47899999999999999999999999999999983
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.099 Score=50.27 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=28.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEeC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD---GVLGLDN 111 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~---~V~~~~r 111 (424)
.++++|.|.||||++|..|++.|.++.| ++..+..
T Consensus 2 ~~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS 39 (336)
T PRK08040 2 SEGWNIALLGATGAVGEALLELLAERQFPVGELYALAS 39 (336)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEc
Confidence 3567899999999999999999999654 5555543
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.1 Score=48.73 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=47.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
...||+|+|.|.|..+|+-|+..|+++|+.|++..... ..+.+..++.
T Consensus 155 ~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------------------------~~l~~~~~~A-- 202 (284)
T PRK14190 155 DISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------------------------KNLAELTKQA-- 202 (284)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------------------------hhHHHHHHhC--
Confidence 57899999999999999999999999999999875411 1355666766
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+||-.+|..
T Consensus 203 DIvI~AvG~p 212 (284)
T PRK14190 203 DILIVAVGKP 212 (284)
T ss_pred CEEEEecCCC
Confidence 9999888753
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.33 Score=46.41 Aligned_cols=36 Identities=42% Similarity=0.499 Sum_probs=32.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
.+.+|+|.|++|.+|..+++.+.+.|.+|++++++.
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~ 180 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSD 180 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 467899999999999999999999999999998744
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.14 Score=49.57 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=27.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDN 111 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r 111 (424)
++|.|+|++|++|++|++.|.+++ .+|+.+..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~ 33 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVA 33 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEE
Confidence 479999999999999999998877 58777744
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.065 Score=43.73 Aligned_cols=88 Identities=19% Similarity=0.211 Sum_probs=44.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEe-CCCCchhhhHHHHHhh-----hhccCCeEEEEccCCCHHHHHHHh
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLD-NFNNYYETSLKKARKG-----LLERAGVFVIDADINDKSLLDKIF 150 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~-----~~~~~~v~~~~~Dl~d~~~v~~~~ 150 (424)
...++|-|.|+ |-+|.+|++.|.+.|+.|..+. |+....+......... .......+.+-.-+.|. .+.++.
T Consensus 8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va 85 (127)
T PF10727_consen 8 AARLKIGIIGA-GRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA 85 (127)
T ss_dssp ----EEEEECT-SCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH
T ss_pred CCccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH
Confidence 45678999998 9999999999999999998874 4322211111110000 00113344555555553 344333
Q ss_pred hcc------Cc-cEEEEcccccC
Q 042406 151 NVV------AF-THVMHLAAQAG 166 (424)
Q Consensus 151 ~~~------~~-d~vi~~Ag~~~ 166 (424)
++. ++ .+|+||.|..+
T Consensus 86 ~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 86 EQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp HHHHCC--S-TT-EEEES-SS--
T ss_pred HHHHHhccCCCCcEEEECCCCCh
Confidence 322 22 59999999755
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.3 Score=48.09 Aligned_cols=71 Identities=17% Similarity=0.166 Sum_probs=51.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
..+++|+|. |-+|+.++++|.++|.+|++++.+.. +.....+..++.+|.+|.+.++++=-+ +.+.|
T Consensus 240 k~HvII~G~-g~lg~~v~~~L~~~g~~vvVId~d~~-----------~~~~~~g~~vI~GD~td~e~L~~AgI~-~A~aV 306 (393)
T PRK10537 240 KDHFIICGH-SPLAINTYLGLRQRGQAVTVIVPLGL-----------EHRLPDDADLIPGDSSDSAVLKKAGAA-RARAI 306 (393)
T ss_pred CCeEEEECC-ChHHHHHHHHHHHCCCCEEEEECchh-----------hhhccCCCcEEEeCCCCHHHHHhcCcc-cCCEE
Confidence 457999997 88999999999999999999985310 111224678999999999888765322 33777
Q ss_pred EEcc
Q 042406 159 MHLA 162 (424)
Q Consensus 159 i~~A 162 (424)
+-+.
T Consensus 307 I~~t 310 (393)
T PRK10537 307 LALR 310 (393)
T ss_pred EEcC
Confidence 7543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 424 | ||||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 1e-29 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 8e-28 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 8e-28 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 8e-28 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-27 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 3e-26 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 7e-26 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 1e-25 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 1e-21 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 9e-21 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 1e-20 | ||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 1e-20 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 2e-20 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-20 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-20 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 7e-20 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 8e-20 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 1e-19 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-19 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-19 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 3e-19 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 5e-19 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 8e-19 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 9e-19 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 1e-18 | ||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 1e-18 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 3e-18 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 5e-18 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 3e-17 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 3e-17 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 2e-16 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 6e-16 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 7e-16 | ||
| 3enk_A | 341 | 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F | 3e-15 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 4e-15 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 3e-13 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 4e-13 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 5e-13 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 6e-13 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 7e-13 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 1e-12 | ||
| 1gy8_A | 397 | Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt | 2e-12 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 7e-11 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 1e-09 | ||
| 3m2p_A | 311 | The Crystal Structure Of Udp-N-Acetylglucosamine 4- | 2e-09 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 1e-08 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 2e-08 | ||
| 3slg_A | 372 | Crystal Structure Of Pbgp3 Protein From Burkholderi | 3e-08 | ||
| 1eq2_A | 310 | The Crystal Structure Of Adp-L-Glycero-D-Mannohepto | 1e-07 | ||
| 2x6t_A | 357 | Agme Bound To Adp-B-Mannose Length = 357 | 2e-07 | ||
| 2z1m_A | 345 | Crystal Structure Of Gdp-D-Mannose Dehydratase From | 3e-07 | ||
| 1rkx_A | 357 | Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose | 1e-06 | ||
| 2yy7_A | 312 | Crystal Structure Of Thermolabile L-Threonine Dehyd | 6e-06 | ||
| 4id9_A | 347 | Crystal Structure Of A Short-Chain DehydrogenaseRED | 2e-05 | ||
| 1wvg_A | 359 | Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal | 2e-05 | ||
| 3a1n_A | 317 | Crystal Structure Of L-Threonine Dehydrogenase From | 4e-05 | ||
| 1n7g_A | 381 | Crystal Structure Of The Gdp-mannose 4,6-dehydratas | 8e-05 | ||
| 3ay3_A | 267 | Crystal Structure Of Glucuronic Acid Dehydrogeanse | 1e-04 | ||
| 3a9w_A | 317 | Crystal Structure Of L-Threonine Bound L-Threonine | 1e-04 | ||
| 1e6u_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Le | 1e-04 | ||
| 1bsv_A | 321 | Gdp-Fucose Synthetase From Escherichia Coli Complex | 2e-04 | ||
| 1t2a_A | 375 | Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydr | 3e-04 | ||
| 1bws_A | 321 | Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose E | 3e-04 | ||
| 1e7s_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K1 | 3e-04 | ||
| 2bll_A | 345 | Apo-Structure Of The C-Terminal Decarboxylase Domai | 3e-04 | ||
| 1z75_A | 358 | Crystal Structure Of Arna Dehydrogenase (decarboxyl | 3e-04 | ||
| 1u9j_A | 358 | Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl | 3e-04 | ||
| 1z74_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 3e-04 | ||
| 1z7b_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 3e-04 | ||
| 1e7q_A | 321 | Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S1 | 4e-04 | ||
| 1z73_A | 358 | Crystal Structure Of E. Coli Arna Dehydrogenase (de | 7e-04 | ||
| 1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 8e-04 |
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine 4-Epimerase From Bacillus Cereus Length = 311 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372 | Back alignment and structure |
|
| >pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6- Epimerase Length = 310 | Back alignment and structure |
|
| >pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose Length = 357 | Back alignment and structure |
|
| >pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From Aquifex Aeolicus Vf5 Length = 345 | Back alignment and structure |
|
| >pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6- Dehydratase From Yersinia Pseudotuberculosis Length = 357 | Back alignment and structure |
|
| >pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine Dehydrogenase From Flavobacterium Frigidimaris Kuc-1 Length = 312 | Back alignment and structure |
|
| >pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE SUPERFAMILY Protein From Agrobacterium Tumefaciens (Target Efi-506441) With Bound Nad, Monoclinic Form 1 Length = 347 | Back alignment and structure |
|
| >pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359 | Back alignment and structure |
|
| >pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
| >pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase Ternary Complex With Nadph And Gdp-rhamnose. Length = 381 | Back alignment and structure |
|
| >pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From Chromohalobacter Salexigens Length = 267 | Back alignment and structure |
|
| >pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic Archaeon Thermoplasma Volcanium Length = 317 | Back alignment and structure |
|
| >pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Length = 321 | Back alignment and structure |
|
| >pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With Nadph Length = 321 | Back alignment and structure |
|
| >pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase Length = 375 | Back alignment and structure |
|
| >pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In The Biosynthesis Of Gdp-L- Fucose Length = 321 | Back alignment and structure |
|
| >pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r Length = 321 | Back alignment and structure |
|
| >pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345 | Back alignment and structure |
|
| >pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358 | Back alignment and structure |
|
| >pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a Length = 321 | Back alignment and structure |
|
| >pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 424 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 1e-131 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 1e-126 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 1e-114 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 1e-106 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 1e-105 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 1e-105 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 3e-93 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 3e-93 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 5e-86 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 6e-76 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 2e-74 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 1e-73 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 6e-73 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 4e-70 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 3e-67 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 4e-60 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 6e-60 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 1e-55 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 2e-53 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 6e-52 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 2e-48 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 3e-48 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 1e-46 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 2e-43 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 1e-42 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 1e-41 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 2e-41 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 7e-41 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 3e-39 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 1e-36 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 2e-36 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 3e-35 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 4e-35 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 9e-24 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 7e-22 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 1e-19 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 3e-04 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 2e-19 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 2e-04 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 4e-19 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 4e-04 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 7e-19 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 9e-18 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 9e-05 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 8e-17 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 2e-15 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 2e-14 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 5e-12 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 2e-11 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 4e-10 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 2e-08 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 9e-08 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 3e-07 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 3e-07 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 8e-07 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 1e-06 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 2e-06 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 3e-06 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 4e-06 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 4e-06 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 8e-06 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 1e-05 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 1e-05 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 5e-05 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 6e-05 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 6e-05 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 6e-05 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 1e-04 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 2e-04 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 2e-04 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 3e-04 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 5e-04 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 5e-04 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 5e-04 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 6e-04 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 6e-04 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 6e-04 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 381 bits (980), Expect = e-131
Identities = 94/341 (27%), Positives = 162/341 (47%), Gaps = 28/341 (8%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARK--GLLERAGVFVIDA 138
T L+TG AGF+GS++ L K V+GLDNF+ ++ +L + + + + I+
Sbjct: 27 TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG 86
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
DI D + +++ HV+H AA V ++ +P + +NI GF+N+L K++ Q
Sbjct: 87 DIRDLTTCEQVMK--GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
+ +A+SSS YG + +P E + P S YA TK E A Y YG GLR+
Sbjct: 145 -SFTYAASSSTYGDHPALPKVE-ENIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRY 202
Query: 259 FTVYGPWGRPDMAY----FFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGL 314
F V+G P+ AY +T +++G + + DG +RDF YID++++ +
Sbjct: 203 FNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYING--DG-ETSRDFCYIDNVIQMNILSA 259
Query: 315 DTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL----PR 370
A+ I+N+ ++ L + L + L + R
Sbjct: 260 LAKDS-----------AKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFR 308
Query: 371 NGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
+GDV+ + A+++ A L Y P + GL+ + WY+ +
Sbjct: 309 SGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFL 349
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 366 bits (943), Expect = e-126
Identities = 95/341 (27%), Positives = 157/341 (46%), Gaps = 28/341 (8%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARK--GLLERAGVFVIDA 138
L+TG AGF+GS++ L K V+GLDNF ++ +L + R + + I
Sbjct: 29 VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQG 88
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
DI + + +V+H AA V ++ +P + +NI GF+N+L + + Q
Sbjct: 89 DIRNLDDCNNACA--GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ 146
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
+ +A+SSS YG + +P E D +P S YA TK E A ++ YG S GLR+
Sbjct: 147 -SFTYAASSSTYGDHPGLPKVE-DTIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRY 204
Query: 259 FTVYGPWGRPDMAY----FFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGL 314
F V+G P+ AY +T +I+G + + DG +RDF YI++ V+ L
Sbjct: 205 FNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYING--DG-ETSRDFCYIENTVQANLLAA 261
Query: 315 DTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL----PR 370
+ +++N+ +++L L L + R
Sbjct: 262 TAGLDARN-----------QVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFR 310
Query: 371 NGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
GDV+ + A+IS A + LGY P D+ G+ + WY+ +
Sbjct: 311 EGDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMFL 351
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 335 bits (862), Expect = e-114
Identities = 71/346 (20%), Positives = 132/346 (38%), Gaps = 38/346 (10%)
Query: 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGV 133
PR + V +TG G +GSH++ L +RGD V+G+DNF R+ L + +
Sbjct: 16 PRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGR-------REHLKDHPNL 68
Query: 134 FVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCK 193
++ I D +L++++ + V+H AA N +N G N+++ K
Sbjct: 69 TFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYNDT---LTNCVGGSNVVQAAK 125
Query: 194 SSDPQPAIVWASSSSVYGVN-KKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLS 252
++ V+ ++ YGV + P + S YA +K A E Y GL
Sbjct: 126 KNNVGR-FVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANE----DYLEYSGLD 180
Query: 253 ITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLA 312
R V GP F + + GK+ V +A RDF ++ D+ + +
Sbjct: 181 FVTFRLANVVGPRNVSGP-LPIFFQRLSEGKKCFVTKA------RRDFVFVKDLARATVR 233
Query: 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP-RN 371
+D ++ + T V + L + + + + + +
Sbjct: 234 AVDGVG--------------HGAYHFSSGTDVAIKELYDAVVEAMALPSYPEPEIRELGP 279
Query: 372 GDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSASAS 417
D + S ++ G + T L+ + V ++ Y S +
Sbjct: 280 DDAPSILLDPSRTIQDFGKIEFTPLKETVAAAVAYFREYGVSGGYT 325
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 314 bits (807), Expect = e-106
Identities = 60/331 (18%), Positives = 128/331 (38%), Gaps = 29/331 (8%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+ GA G +G+ ++ L+K + G +N ++K ++ G F + +
Sbjct: 5 ILIIGACGQIGTELTQKLRK----LYGTENVIASD---IRKLNTDVVNS-GPFEV-VNAL 55
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D + ++ + V T + +AA +NP + N+ ++L K+ + I
Sbjct: 56 DFNQIEHLVEVHKITDIYLMAALLSATA-EKNPAFAWDLNMNSLFHVLNLAKAKKIK-KI 113
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
W SS +V+G + + +P+++Y +K+AGE Y++IYG+ + +R+ +
Sbjct: 114 FWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPGL 173
Query: 262 YGP-----WGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316
G D A F + I K+ + + + Y+DD + + +
Sbjct: 174 ISWSTPPGGGTTDYAVDIFYK-AIADKKYECFLSSE---TKMPMMYMDDAIDATINIMKA 229
Query: 317 AKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQF 376
+ +NL + P + + I + + + D
Sbjct: 230 ---------PVEKIKIHSSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQKIADSWP 280
Query: 377 THANISLAQRELGYMPTTDLETGLKKFVRWY 407
+ S A+ + + T DLE+ K +
Sbjct: 281 ASIDDSQAREDWDWKHTFDLESMTKDMIEHL 311
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 313 bits (805), Expect = e-105
Identities = 84/330 (25%), Positives = 137/330 (41%), Gaps = 39/330 (11%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVF-VIDAD 139
+L+TG AGF+G H++ AL G+ V LD+ + G V + + D
Sbjct: 9 RILITGGAGFIGGHLARALVASGEEVTVLDDLR--VPPMIPPEGTGKFLEKPVLELEERD 66
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
++D V HLA+ V + + P Y++ N+ +LL C S
Sbjct: 67 LSD------------VRLVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPK 113
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGL-SITGLRF 258
+V S+ VYG +P E D P S YAA+K E +A A+ + +RF
Sbjct: 114 -VVVGSTCEVYGQADTLPTPE-DSPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRF 171
Query: 259 FTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318
F VYGP RPD +++ + V DG RDFTYI D+V +A +
Sbjct: 172 FNVYGPGERPDALVPRLCANLLTRNELPVEG--DGEQR-RDFTYITDVVDKLVALAN--- 225
Query: 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTH 378
+ N G+ + V+ ++ +L+ AE PR ++
Sbjct: 226 --RPLPS---------VVNFGSGQSLSVNDVIRILQATSP-AAEVARKQ-PRPNEITEFR 272
Query: 379 ANISLAQRELGYMP-TTDLETGLKKFVRWY 407
A+ +L R++G +E G++ + W+
Sbjct: 273 ADTALQTRQIGERSGGIGIEEGIRLTLEWW 302
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 312 bits (801), Expect = e-105
Identities = 69/342 (20%), Positives = 130/342 (38%), Gaps = 47/342 (13%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+ VTG GF+G +V ++K G+ + L + + R D
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVS------------DYT 52
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
+ L++++ +V V+HLAA G + + N NL + C ++ I
Sbjct: 53 LEDLINQLNDV---DAVVHLAATRGSQGKISEF----HDNEILTQNLYDACYENNISN-I 104
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
V+AS+ S Y +P++E P +Y +K A E I + Y+ GL I LRF +
Sbjct: 105 VYASTISAYSDETSLPWNE-KELPLPDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHL 163
Query: 262 YGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKST 321
YG + + F R G+++T++ + + R+F Y D K + L
Sbjct: 164 YGFNEKNNYMINRFFRQAFHGEQLTLHA--NSVAK-REFLYAKDAAKSVIYALKQ----- 215
Query: 322 GSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANI 381
FN+G+ + + + + K V N + ++ +
Sbjct: 216 --------EKVSGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDS 267
Query: 382 SLAQRELGYMPTTDLETGLKK----------FVRWYLSYYNS 413
S A+ L + + T +++ WY +++
Sbjct: 268 SKAKELLDFSTDYNFATAVEEIHLLMRGLDDVPLWYEGHHHH 309
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 3e-93
Identities = 80/332 (24%), Positives = 139/332 (41%), Gaps = 32/332 (9%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
++VTG AGF+GSH+ L + G V+ +DN ++ + + D+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNP---------SAELHVRDLK 53
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D S I V H AA VR + P + N+ N+LE + + + +
Sbjct: 54 DYSWGAGIK----GDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRT-V 108
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
V+ASSS+VYG +P E++ P S+Y A K AGE + Y ++G+ +R+ V
Sbjct: 109 VFASSSTVYGDADVIPTPEEEPYK-PISVYGAAKAAGEVMCATYARLFGVRCLAVRYANV 167
Query: 262 YGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKST 321
GP R + Y F + + V DG + + Y+ D V+ LA ++
Sbjct: 168 VGPRLRHGVIYDFIMKLRRNPNVLEVL--GDGTQR-KSYLYVRDAVEATLAAWKKFEEMD 224
Query: 322 GSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP-----LPRNGDVQF 376
N+GN V V + ++ ++L ++ E +++P GDV++
Sbjct: 225 APF---------LALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKY 275
Query: 377 THANISLAQRELGYMPTTDLETGLKKFVRWYL 408
++ + G+ PT +KK
Sbjct: 276 MTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLA 307
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 284 bits (728), Expect = 3e-93
Identities = 87/346 (25%), Positives = 154/346 (44%), Gaps = 37/346 (10%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDG--VLGLDNFNNYYETSLKKARKGL----LERAGVF 134
T+L+TG AGFVGS+++ ++ V+ LD F + S + L
Sbjct: 12 TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE 71
Query: 135 VIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKS 194
VI ADIN+ L ++ + F ++ H AA + M N +++N F+NLLE +S
Sbjct: 72 VIAADINNPLDLRRLEKL-HFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNLLEIARS 128
Query: 195 SDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSIT 254
+ +++ASS+ VYG N K P + + P ++Y +K + +++
Sbjct: 129 KKAK--VIYASSAGVYG-NTKAPNVV-GKNESPENVYGFSKLCMDEFVLSHS--NDNVQV 182
Query: 255 GLRFFTVYGPWGRPDMAY----FFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310
GLR+F VYGP + K + ++E G RDF YI+D+++
Sbjct: 183 GLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFE--FG-EQLRDFVYIEDVIQAN 239
Query: 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR 370
+ + K SG ++N+G + + +VS+L++ L + + P
Sbjct: 240 VKAMKAQK----SG----------VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPY 284
Query: 371 NGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSASA 416
+ T A+I +L Y P DLE+G+K ++ + + A
Sbjct: 285 AFFQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPHIHAIFKGQRA 330
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 263 bits (676), Expect = 5e-86
Identities = 82/330 (24%), Positives = 141/330 (42%), Gaps = 34/330 (10%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
++VTG AGF+GSHV L + + ++ +DN ++ E + + ++ AD+
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSESNE-IVVIDNLSSGNEEFVNE---------AARLVKADL 52
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
+ D + V H+AA VR +NP+ +N+ LLE + +
Sbjct: 53 AADDIKDYLKGAEE---VWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSR- 108
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
IV+ S+S+VYG K +P E T P SLY A+K A EA+ +Y H + + RF
Sbjct: 109 IVFTSTSTVYGEAKVIPTPEDYPTH-PISLYGASKLACEALIESYCHTFDMQAWIYRFAN 167
Query: 261 VYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKS 320
V G + Y F + + + + +G + + YI D V L GL ++
Sbjct: 168 VIGRRSTHGVIYDFIMKLKRNPEELEILG--NGEQN-KSYIYISDCVDAMLFGLRGDERV 224
Query: 321 TGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP--LPRNGDVQFTH 378
IFN+G+ + V R+ ++ + L + + GDV
Sbjct: 225 -------------NIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVML 271
Query: 379 ANISLAQRELGYMPTTDLETGLKKFVRWYL 408
+I + LG+ P + E ++ VR +
Sbjct: 272 LSIEKL-KRLGWKPRYNSEEAVRMAVRDLV 300
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 240 bits (614), Expect = 6e-76
Identities = 79/379 (20%), Positives = 141/379 (37%), Gaps = 46/379 (12%)
Query: 51 SATFRRHSSGGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGL 109
S HSSG + V+V G AGFVGS++ L + G + V +
Sbjct: 4 SHHHHHHSSGLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVV 63
Query: 110 DNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRY 169
DN + + ++ + V + I D +LL + + + V HLA G +
Sbjct: 64 DNLLSAEKINVP-------DHPAVRFSETSITDDALLASLQDEYDY--VFHLATYHGNQS 114
Query: 170 AMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD---- 225
++ +P + E+N + L E K +V++++ + TD
Sbjct: 115 SIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSL 174
Query: 226 -QPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFF---------- 274
S Y+ +K GE + Y+ + L RF VYGP +
Sbjct: 175 HNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNV 234
Query: 275 ---FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPA 331
F ++G + + G + RDF +++D+ GL GG
Sbjct: 235 TPTFIYKALKGMPLPLEN--GGVAT-RDFIFVEDVAN----GLIACAADGTPGG------ 281
Query: 332 EFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQF-THANISLAQRELGY 390
++N+ + ++ L + + +I E LP R D + A+RELG+
Sbjct: 282 ---VYNIASGKETSIADLATKINEITGNNTELDRLP-KRPWDNSGKRFGSPEKARRELGF 337
Query: 391 MPTTDLETGLKKFVRWYLS 409
++ GL+K + W +
Sbjct: 338 SADVSIDDGLRKTIEWTKA 356
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 234 bits (598), Expect = 2e-74
Identities = 67/334 (20%), Positives = 121/334 (36%), Gaps = 37/334 (11%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
++VTG AGF+GS++ AL +G +L +DN K + ++ D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL-----KDGTKFVNLVDLNIADYMDKEDF 56
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
+ + + F V + H A + +++N LL C +
Sbjct: 57 LIQIMAGEEFGDV--EAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLEREIP-- 110
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
++ASS++ YG ++ +P ++Y +K + I G R+F
Sbjct: 111 FLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFN 169
Query: 261 VYGPWGRPDMAY----FFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316
VYGP + F + G+ ++E RDF Y+ D+ L L+
Sbjct: 170 VYGPREGHKGSMASVAFHLNTQLNNGESPKLFEG-SENFK-RDFVYVGDVADVNLWFLEN 227
Query: 317 AKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP---RNGD 373
SG IFNLG + K K + + +P P +
Sbjct: 228 GV----SG----------IFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRY 272
Query: 374 VQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
FT A+++ + P + G+ +++ W
Sbjct: 273 QAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 232 bits (593), Expect = 1e-73
Identities = 59/344 (17%), Positives = 120/344 (34%), Gaps = 38/344 (11%)
Query: 82 VLVTGAAGFVGSHVSLAL-KKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+LVTG++G +G+ + L +K G + + + G+ I D+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQ-------------RDTGGIKFITLDV 48
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
+++ +D+ + + HLA + ++P + N+ G N+LE K
Sbjct: 49 SNRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRV-EK 106
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
+V S+ V+G +P +++ TK A E + Y +GL + LR+
Sbjct: 107 VVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPG 166
Query: 261 VYGPWGRPDMAYF----FFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316
+ P ++ ++ Y AP+ A Y+ D +K + +
Sbjct: 167 IISYKAEPTAGTTDYAVEIFYYAVKREKYKCYLAPN---RALPMMYMPDALKALVDLYEA 223
Query: 317 AKKSTGSGGKKKGPAEFRIFNLG--NTTPVPVSRLVSLLEKIL-KVKAETKVLPLPRNGD 373
+ +N+ TP S L S +++ + + + E K +
Sbjct: 224 DRDKLVLR---------NGYNVTAYTFTP---SELYSKIKERIPEFEIEYKEDFRDKIAA 271
Query: 374 VQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSASAS 417
+ S A E G+ DL+ + +
Sbjct: 272 TWPESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEKLGIEGKH 315
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 231 bits (592), Expect = 6e-73
Identities = 67/338 (19%), Positives = 123/338 (36%), Gaps = 37/338 (10%)
Query: 78 RGLTVLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVI 136
G ++VTG AGF+GS++ AL +G +L +DN K + ++
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNL-----KDGTKFVNLVDLNIADYMD 99
Query: 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD 196
D + + + F V + H A + +++N LL C +
Sbjct: 100 KEDFLIQIMAGEEFGDV--EAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLERE 155
Query: 197 PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGL 256
++ASS++ YG ++ +P +++ +K + I G
Sbjct: 156 IP--FLYASSAATYGGRTSDFIESREYE-KPLNVFGYSKFLFDEYVRQILPEANSQIVGF 212
Query: 257 RFFTVYGPWGRPDMAY----FFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLA 312
R+F VYGP + F + G+ ++E + RDF Y+ D+ L
Sbjct: 213 RYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEG-SE-NFKRDFVYVGDVADVNLW 270
Query: 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP--- 369
L+ SG IFNLG + K K + + +P P
Sbjct: 271 FLENGV----SG----------IFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKL 315
Query: 370 RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
+ FT A+++ + P + G+ +++ W
Sbjct: 316 KGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 353
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 4e-70
Identities = 91/339 (26%), Positives = 144/339 (42%), Gaps = 45/339 (13%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
VLVTG AGF+GSH+ L RG V LDN ++ GV D+
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV---------PKGVPFFRVDL 52
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
DK +++ F THV H AAQA V+ ++++P E N+ G +NLLE C+
Sbjct: 53 RDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGV-EK 111
Query: 201 IVWASSS-SVYGVN-KKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
+V+AS+ ++YG + E +P S YAA+K A E Y YGL LR+
Sbjct: 112 LVFASTGGAIYGEVPEGERAEETWPP-RPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRY 170
Query: 259 FTVYGPWGRPD-------MAYFFFTRDIIRGKRITVYEAP---DGASVARDFTYIDDIVK 308
VYGP P + F +++G +T+Y D V RD+ Y+ D+ +
Sbjct: 171 GNVYGPRQDPHGEAGVVAI----FAERVLKGLPVTLYARKTPGDEGCV-RDYVYVGDVAE 225
Query: 309 GCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL 368
L + + I+N+G ++ + + E + P
Sbjct: 226 AHALALFSLE---------------GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAP- 269
Query: 369 PRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
PR GD++ + + G+ P + G++ V +
Sbjct: 270 PRPGDLERSVLSPLKL-MAHGWRPKVGFQEGIRLTVDHF 307
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 215 bits (551), Expect = 3e-67
Identities = 71/349 (20%), Positives = 128/349 (36%), Gaps = 39/349 (11%)
Query: 71 STRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLER 130
S + +L+TG AG +GS++ +G +L +DNF R+ L
Sbjct: 12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGK-------REVLPPV 64
Query: 131 AGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLE 190
AG+ VI+ + D LL++ F+ THV+H AA + +N+ G +N+ +
Sbjct: 65 AGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKD---PDDWAEDAATNVQGSINVAK 121
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYG 250
+ ++ ++ YG VP T P + Y +K AGEA
Sbjct: 122 AASKAGV-KRLLNFQTALCYGRPATVPIPIDSPT-APFTSYGISKTAGEAFLMM----SD 175
Query: 251 LSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310
+ + LR V GP F+ R + G++ + RDF + D +
Sbjct: 176 VPVVSLRLANVTGPRLAIGPIPTFYKR-LKAGQKCFCSDT------VRDFLDMSDFLAIA 228
Query: 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKIL--KVKAETKVLPL 368
L + + +FN+ + + ++ + + V+
Sbjct: 229 DLSLQEGRPT-------------GVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPVVA- 274
Query: 369 PRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSASAS 417
P DV + S + E G+ D + + + WY Y + S
Sbjct: 275 PGADDVPSVVLDPSKTETEFGWKAKVDFKDTITGQLAWYDKYGVTDIFS 323
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 198 bits (506), Expect = 4e-60
Identities = 54/329 (16%), Positives = 106/329 (32%), Gaps = 69/329 (20%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+++TGA GFVG ++ L D +F +
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDHH--------------------------IFEVHRQTK 36
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
++ L + ++HLA ++ + N++ ++L+ + +PAI
Sbjct: 37 EEELESALLKA---DFIVHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKPAI 89
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
+ SSS + Y +K GE + Y YG ++ R+ +
Sbjct: 90 LL-SSSIQAT---------------QDNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNL 133
Query: 262 YGPWGRPDMAYFF--FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319
+G W +P+ F I R + I V +V Y+DDIV ++
Sbjct: 134 FGKWCKPNYNSVIATFCYKIARNEEIQVN----DRNVELTLNYVDDIVAEIKRAIEGTPT 189
Query: 320 STGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHA 379
+ + N V + +V LL K + + + + L +
Sbjct: 190 IEN-----------GVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLYST 238
Query: 380 NIS---LAQRELGYMPTTDLETGLKKFVR 405
+S + D +F++
Sbjct: 239 YLSYLPSTDFSYPLLMNVDDRGSFTEFIK 267
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 199 bits (508), Expect = 6e-60
Identities = 78/394 (19%), Positives = 129/394 (32%), Gaps = 65/394 (16%)
Query: 69 VKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF---NNYYETSLK---- 121
++ + G V+V G G+ G +L L K+ V +DN ++ L+
Sbjct: 1 MRGSHHHHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTP 60
Query: 122 --------KARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQN 173
K L ++ + DI D L + F V+H Q Y+M +
Sbjct: 61 IASIHDRISRWKALTGKSIELYV-GDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMID 119
Query: 174 PNS---YVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKK------VPFSEKDRT 224
+ +N+ G +N+L K + +V + YG + + RT
Sbjct: 120 RSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRT 179
Query: 225 D------QPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPW-----------GR 267
D Q +S Y +K +G+ T L VYG R
Sbjct: 180 DTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNR 239
Query: 268 PDMAYFF------FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKST 321
D F F G +TVY G R + I D V+ + K
Sbjct: 240 LDYDAVFGTALNRFCVQAAVGHPLTVYG--KGGQT-RGYLDIRDTVQCVEIAIANPAK-- 294
Query: 322 GSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILK---VKAETKVLPLPRNGDVQFTH 378
EFR+FN V+ L SL+ K + + +P PR + +
Sbjct: 295 --------AGEFRVFNQFTEQ-FSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYY 345
Query: 379 ANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412
ELG P ++ L + + + + +
Sbjct: 346 NAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFKD 379
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 1e-55
Identities = 67/353 (18%), Positives = 118/353 (33%), Gaps = 46/353 (13%)
Query: 76 STRGLTVLVTGAAGFVGSHVSLALKKRG-------DGVLGLDNFNNYYETSLKKARKGLL 128
+G+ + + GAAG VG ++ L K G + +D F
Sbjct: 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF-------- 62
Query: 129 ERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNL 188
V AD++ +K+ + HLAA A + + N+ G L
Sbjct: 63 -SGAVDARAADLSAPGEAEKLVEA-RPDVIFHLAAIVSGE-AELDFDKGYRINLDGTRYL 119
Query: 189 LETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHA 244
+ + +P +V+ SS +V+G P ++ T P + Y K E +
Sbjct: 120 FDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHT-TPLTSYGTQKAICELLLSD 178
Query: 245 YNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIR----GKRITVYEAPDGASVARDF 300
Y+ G+R T+ G+P+ A F +I+R G+ + P S+
Sbjct: 179 YSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVL---PVPESIRHWH 235
Query: 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK 360
V + G + G R ++ + V + L K+ K
Sbjct: 236 ASPRSAVGFLIHGAMIDVEKVGPR---------RNLSMPGLS-ATVGEQIEALRKVAGEK 285
Query: 361 AETKVLPLP-----RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYL 408
A + P R + A RELG+ + E ++ + L
Sbjct: 286 AVALIRREPNEMIMRMCEGWAPGFEAKRA-RELGFTAESSFEEIIQVHIEDEL 337
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 2e-53
Identities = 88/352 (25%), Positives = 149/352 (42%), Gaps = 41/352 (11%)
Query: 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFV 135
+L+TG AGFVGSH++ L G V +DNF T K+ + + +
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF----FTGRKRNVEHWIGHENFEL 79
Query: 136 IDADINDKSLL--DKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCK 193
I+ D+ + + D+I+ HLA+ A M NP +++N G +N+L K
Sbjct: 80 INHDVVEPLYIEVDQIY---------HLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAK 130
Query: 194 SSDPQPAIVWASSSSVYGVNKKVPFSEKDR----TDQPASLYAATKKAGEAIAHAYNHIY 249
+ ++ AS+S VYG + P SE P + Y K+ E + +AY
Sbjct: 131 RVGAR--LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE 188
Query: 250 GLSITGLRFFTVYGPWGRPDMAYFF--FTRDIIRGKRITVYEAPDGASVARDFTYIDDIV 307
G+ + R F +GP + F ++G+ +TVY G S R F Y+ D+V
Sbjct: 189 GVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYG--SG-SQTRAFQYVSDLV 245
Query: 308 KGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP 367
G +A +++ P NLGN + L++ ++ +E + L
Sbjct: 246 NGLVALMNS---------NVSSP-----VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS 291
Query: 368 LPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSASASPS 419
++ D Q +I A+ LG+ P LE GL K + ++ + +
Sbjct: 292 EAQD-DPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANNQG 342
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 6e-52
Identities = 76/368 (20%), Positives = 142/368 (38%), Gaps = 43/368 (11%)
Query: 69 VKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLL 128
++ + + L + +TGA GF+ SH++ LK G V+ D N + T +
Sbjct: 19 LEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE--- 75
Query: 129 ERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQA-GVRYAMQNPNSYVESNIAGFVN 187
F + D+ K+ HV +LAA G+ + N + + +N N
Sbjct: 76 -----FHL-VDLRVMENCLKV--TEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFN 127
Query: 188 LLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR------TDQPASLYAATKKAGEAI 241
++E + + + +ASS+ +Y K++ + +P + K A E +
Sbjct: 128 MIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEEL 186
Query: 242 AHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFF----FTRDIIRGKR-ITVYEAPDGASV 296
YN +G+ RF +YGP+G F R ++ DG
Sbjct: 187 CKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWG--DG-LQ 243
Query: 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKI 356
R FT+ID+ V+G L + + P N+G+ V ++ + ++
Sbjct: 244 TRSFTFIDECVEGVLRLTKS---------DFREP-----VNIGSDEMVSMNEMAEMVLSF 289
Query: 357 LKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSASA 416
+ K +P P V+ +++ +L + +LG+ P L+ GL+ W A
Sbjct: 290 EEKKLPIHHIPGP--EGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKA 347
Query: 417 SPSRKKNF 424
S +
Sbjct: 348 KGSDVSLY 355
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 2e-48
Identities = 52/235 (22%), Positives = 86/235 (36%), Gaps = 31/235 (13%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+LVTGAAG VGS + L V D + G E A ++ D+
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDL-----------GAAE-AHEEIVACDL 51
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLETCKSSDPQP 199
D + + ++HL + ++ P N +++NI G NL E ++ P
Sbjct: 52 ADAQAVHDLVK--DCDGIIHLGGVS-----VERPWNDILQANIIGAYNLYEAARNLGK-P 103
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
IV+ASS+ G + + + +P SLY +K GE +A Y H + + +R
Sbjct: 104 RIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIG 163
Query: 260 TVYGPWGRPDMAY-----FFFTRDIIRGKRITVYEAP----DGASVARDFTYIDD 305
+ + M F R + R A+ + D
Sbjct: 164 SCFPKPKDARMMATWLSVDDFMRLMKRAFVAPKLGCTVVYGASAN-TESWWDNDK 217
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 3e-48
Identities = 75/381 (19%), Positives = 135/381 (35%), Gaps = 63/381 (16%)
Query: 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGV 133
P S + VL+ G GF+G H+S + + D + + L++ +
Sbjct: 19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDM-------QTDRLGDLVKHERM 71
Query: 134 FVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCK 193
+ DI + V ++ L A A ++ P E + + ++ +
Sbjct: 72 HFFEGDITINKEWVEYH-VKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAV 130
Query: 194 SSDPQPAIVWASSSSVYGVNKKVPFSEKD------RTDQPASLYAATKKAGEAIAHAYNH 247
+V+ S+S VYG+ F ++P +YA +K+ + + Y
Sbjct: 131 KYGKH--LVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRVIWGY-G 187
Query: 248 IYGLSITGLRFFTVYGPWGRPDMAYFF----------FTRDIIRGKRITVYEAPDGASVA 297
+ GL+ T R F GP D Y F I+RG+ I++ + G+
Sbjct: 188 MEGLNFTLFRPFNWIGP--GLDSIYTPKEGSSRVVTQFLGHIVRGENISLVD--GGSQK- 242
Query: 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKIL 357
R FTY+DD + + ++ G A +I+N+GN P + L K+L
Sbjct: 243 RAFTYVDDGISALMKIIEN----------SNGVATGKIYNIGN--PNNNFSVRELANKML 290
Query: 358 KV------------------KAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETG 399
++ DVQ I +ELG+ P +
Sbjct: 291 ELAAEFPEYADSAKRVKLVETTSGAYYGNGYQ-DVQNRVPKIENTMQELGWAPQFTFDDA 349
Query: 400 LKKFVRWYLSYYNSASASPSR 420
L++ Y + A A +
Sbjct: 350 LRQIFEAYRGHVADARALVEQ 370
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 1e-46
Identities = 72/351 (20%), Positives = 121/351 (34%), Gaps = 40/351 (11%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
VL+ G GF+G+H++ L + V GLD A L ++ DI
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIG--------SDAISRFLNHPHFHFVEGDI 54
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
+ S + V V+ L A A +NP E + + ++ C +
Sbjct: 55 SIHSEWIEYH-VKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKR-- 111
Query: 201 IVWASSSSVYGVNKKVPFSEKDR------TDQPASLYAATKKAGEAIAHAYNHIYGLSIT 254
I++ S+S VYG+ F E ++P +Y+ +K+ + + AY GL T
Sbjct: 112 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFT 171
Query: 255 GLRFFTVYGPWGRPDMAYFF----------FTRDIIRGKRITVYEAPDGASVARDFTYID 304
R F GP R D +++ G I + + G R FT I
Sbjct: 172 LFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLID--GGKQK-RCFTDIR 226
Query: 305 DIVKGCLAGLDTAKKSTGSGGKKKG--PAEFRIFNLGNTTPVPV---SRLVSLLEKILKV 359
D ++ ++ A G E I LG
Sbjct: 227 DGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFR 286
Query: 360 KAETKV-LPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
E+ DV+ +I A R L + P D++ + + + ++L
Sbjct: 287 VVESSSYYGKGYQ-DVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLR 336
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 2e-43
Identities = 86/345 (24%), Positives = 142/345 (41%), Gaps = 62/345 (17%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
++L+ G AG++GSH L G V+ +DN +E ++ + G + D+
Sbjct: 3 SILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITE---------GAKFYNGDL 53
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
DK+ L +F VMH AA + V +M+ P Y +N+ G + LLE
Sbjct: 54 RDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK-VDK 112
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
+++S+++ YG +E+ T P + Y TK A E + H Y+ L R+F
Sbjct: 113 FIFSSTAATYGEVDVDLITEETMT-NPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFN 171
Query: 261 VYG--PWGR------------PDMAYFFFTRDIIRGKR--ITV----YEAPDGASVARDF 300
V G P G P + + G+R I + Y PDG + RD+
Sbjct: 172 VAGATPNGIIGEDHRPETHLIPLVL------QVALGQREKIMMFGDDYNTPDGTCI-RDY 224
Query: 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK 360
+++D+V GL + S +NLGN S+ E + V+
Sbjct: 225 IHVEDLVAAHFLGLKDLQNGGES----------DFYNLGN------GNGFSVKEIVDAVR 268
Query: 361 AETKVLPLP------RNGDVQFTHANISLAQRELGYMPT-TDLET 398
T +P R GD A+ A+ +LG+ P +++T
Sbjct: 269 EVTNH-EIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRYVNVKT 312
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 1e-42
Identities = 94/351 (26%), Positives = 153/351 (43%), Gaps = 49/351 (13%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
VLVTG +G++GSH + L + G V+ LDN N + L + L + F ++ DI
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER-LGGKHPTF-VEGDI 59
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
+++L+ +I + A V+H A V ++Q P Y ++N+ G + L+ ++++ +
Sbjct: 60 RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-N 118
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAI----AHAYNHIYGLSITGL 256
+++SS++VYG N K+P+ E T P S Y +K E I A SI L
Sbjct: 119 FIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQP---DWSIALL 175
Query: 257 RFFTVYG----------PWGRPD--MAYFFFTRDIIR---GKR--ITV----YEAPDGAS 295
R+F G P G P+ M Y I + G+R + + Y DG
Sbjct: 176 RYFNPVGAHPSGDMGEDPQGIPNNLMPY------IAQVAVGRRDSLAIFGNDYPTEDGTG 229
Query: 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEK 355
V RD+ ++ D+ G + ++ G I+NLG V +V+ K
Sbjct: 230 V-RDYIHVMDLADGHVVAMEKLANKPG----------VHIYNLGAGVGNSVLDVVNAFSK 278
Query: 356 ILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
P R GD+ A+ S A REL + T L+ + W
Sbjct: 279 ACGKPVNYHFAP-RREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 1e-41
Identities = 93/351 (26%), Positives = 148/351 (42%), Gaps = 50/351 (14%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
T+LVTG AG++GSH ++ L G V+ DN N ++ + K + + F + D+
Sbjct: 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEK-ITGKTPAF-HETDV 64
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
+D+ L +IF+ T +H AA V ++ P Y +N+ ++LL + +
Sbjct: 65 SDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-R 123
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAI----AHAYNHIYGLSITGL 256
IV++SS++VYGV ++ P E + Y TK E I A + L
Sbjct: 124 IVFSSSATVYGVPERSPIDETFPL-SATNPYGQTKLMAEQILRDVEAADP---SWRVATL 179
Query: 257 RFFTVYG----------PWGRPD--MAYFFFTRDIIR---GKR--ITV----YEAPDGAS 295
R+F G P G P+ M Y + + GK + V Y PDG
Sbjct: 180 RYFNPVGAHESGLIGEDPAGIPNNLMPY------VAQVAVGKLEKLRVFGSDYPTPDGTG 233
Query: 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEK 355
V RD+ ++ D+ +G +A LD ++ NLG V +V EK
Sbjct: 234 V-RDYIHVVDLARGHIAALDALERRDA----------SLTVNLGTGRGYSVLEVVRAFEK 282
Query: 356 ILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
+++ R GDV +AN + A +G+ DLE RW
Sbjct: 283 ASGRAVPYELVA-RRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRW 332
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 2e-41
Identities = 47/231 (20%), Positives = 79/231 (34%), Gaps = 25/231 (10%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+LVTGAAG +G + L + + D + D+
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADL------------SPLDPAGPNEECVQCDL 52
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D + ++ + ++HL + + ++ NI G NL E ++ QP
Sbjct: 53 ADANAVNAMVA--GCDGIVHLGGISVEK----PFEQILQGNIIGLYNLYEAARAHG-QPR 105
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
IV+ASS+ G + D +P LY +K GE +A Y +G +R +
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGS 165
Query: 261 VYGPWGRPDMAY-FFFTRDIIRGKRITVYEAPDGASV-----ARDFTYIDD 305
M +F D + G V A D + D+
Sbjct: 166 CTPEPNNYRMLSTWFSHDDFVSLIEAVFRAPVLGCPVVWGASANDAGWWDN 216
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 7e-41
Identities = 108/355 (30%), Positives = 164/355 (46%), Gaps = 51/355 (14%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY--ETSLKKARKGLLERAG--VFVI 136
VLVTG AG++GSH L L + G + +DNF+N + SL ++ + + E G V
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD 196
+ DI D+ L ++F +F V+H A V ++Q P Y N+ G + LLE K+
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 197 PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAI----AHAYNHIYGLS 252
+ +V++SS++VYG + +P E T + Y +K E + A +
Sbjct: 124 VK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADK---TWN 179
Query: 253 ITGLRFFTVYG----------PWGRPD--MAYFFFTRDIIR---GKR--ITV----YEAP 291
LR+F G P G P+ M Y + + G+R + V Y+
Sbjct: 180 AVLLRYFNPTGAHASGCIGEDPQGIPNNLMPY------VSQVAIGRREALNVFGNDYDTE 233
Query: 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVS 351
DG V RD+ ++ D+ KG +A L K+ G RI+NLG T V ++V
Sbjct: 234 DGTGV-RDYIHVVDLAKGHIAALRKLKEQCG----------CRIYNLGTGTGYSVLQMVQ 282
Query: 352 LLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRW 406
+EK K KV+ R GDV +AN SLAQ ELG+ L+ + RW
Sbjct: 283 AMEKASGKKIPYKVVA-RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRW 336
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 3e-39
Identities = 77/355 (21%), Positives = 131/355 (36%), Gaps = 45/355 (12%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+L+TG GF+GS+++ +G ++ DN + + L + DI
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNL--SRKGATDNL-HWLSSLGNFEFVHGDI 59
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
+K+ + ++ HLA Q + ++ NP E N+ G +NLLE + +
Sbjct: 60 RNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCN 119
Query: 201 IVWASSSSVYG----------------VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHA 244
I+++S++ VYG V+K + E + D S Y +K A +
Sbjct: 120 IIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLD-FHSPYGCSKGAADQYMLD 178
Query: 245 YNHIYGLSITGLRFFTVYGPWGRPD--------MAYFFFTRDIIRGKRITVYEAPDGASV 296
Y I+GL+ R ++YG K T+ +G V
Sbjct: 179 YARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISG--NGKQV 236
Query: 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVS--RLVSLLE 354
RD + +D++ L K G FN+G T +S L LLE
Sbjct: 237 -RDVLHAEDMISLYFTALANVSKIRG-----------NAFNIGGTIVNSLSLLELFKLLE 284
Query: 355 KILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
+ LP R D + A+I + + P + G++K W S
Sbjct: 285 DYCNIDMRFTNLP-VRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 338
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-36
Identities = 76/372 (20%), Positives = 135/372 (36%), Gaps = 63/372 (16%)
Query: 81 TVLVTGAAGFVGSHVSLAL-KKRGDGVLGLDNFNN-YYETSLKKARKGLLER-------- 130
VLV G AG++GSH AL + V+ +D+ + ++ + R+ + +
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 131 ------AGVFVIDADINDKSLLDKIF-NVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIA 183
+ D+ ++ L+ +F V+H+ A V ++++P Y ++N+
Sbjct: 64 PPWADRYAALEV-GDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVV 122
Query: 184 GFVNLLETCKSSDPQPAIVWASSSSVYGV-------NKKVPFSEKDRTDQPASLYAATKK 236
G + LL+ I+++SS++++G P + P S Y +K
Sbjct: 123 GILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTNAEPIDINAKK-SPESPYGESKL 180
Query: 237 AGEAIAHAYNHIYGLSITGLRFFTVYG--PWGR----PD----------MAY-------- 272
E + YG+ LR+F G G
Sbjct: 181 IAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240
Query: 273 -FFFTRDIIRGKRITV----YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKK 327
D KR+ + Y PDG V RD+ ++ D+ + LD +K G
Sbjct: 241 RLTIHEDASTDKRMPIFGTDYPTPDGTCV-RDYVHVCDLASAHILALDYVEK----LGPN 295
Query: 328 KGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRE 387
F +FNLG + V ++ + K + R GD + A A+
Sbjct: 296 DKSKYFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECG-RREGDPAYLVAASDKAREV 354
Query: 388 LGYMPT-TDLET 398
LG+ P LE
Sbjct: 355 LGWKPKYDTLEA 366
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 2e-36
Identities = 54/369 (14%), Positives = 105/369 (28%), Gaps = 69/369 (18%)
Query: 71 STRPRSTRGLT--VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLL 128
+P S G V GA G +G H + A++ G ++ + ++ L
Sbjct: 3 DEQPLSRPGAHVKYAVLGATGLLGHHAARAIRAAGHDLVLIH---------RPSSQIQRL 53
Query: 129 ERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNL 188
A++ D + L++ + V+ A + V S +
Sbjct: 54 AYLEPECRVAEMLDHAGLERALRGL--DGVIFSAGY--YPSRPRRWQEEVASALGQTNPF 109
Query: 189 LETCKSSDPQPAIVWASSSSVYGVNKK-VPFSEK---DRTDQPASLYAATKKAGEAIAHA 244
C + I++ S+ + + +P E D S Y K A + A
Sbjct: 110 YAACLQARVPR-ILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQARE 168
Query: 245 YNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYID 304
GL + V G I G+ G R+
Sbjct: 169 QAR-NGLPVVIGIPGMVLGELDIGPTTGRVI-TAIGNGEMTHY---VAG---QRNVIDAA 220
Query: 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETK 364
+ +G L L+ + + L + ++ L + ++L A +
Sbjct: 221 EAGRGLLMALERGRIG-------------ERYLLTG-HNLEMADLTRRIAELLGQPA-PQ 265
Query: 365 VLPLP---------------RNGDVQFT-----------HANISLAQRELGYMPTTDLET 398
+ + + A+ ELG+ TT L+
Sbjct: 266 PMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDD 325
Query: 399 GLKKFVRWY 407
L + + W+
Sbjct: 326 TLLRAIDWF 334
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 3e-35
Identities = 72/361 (19%), Positives = 135/361 (37%), Gaps = 48/361 (13%)
Query: 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGL-----DNFNNYYETSLKKARKGLLERAG 132
+G V VTG GF G +SL L+ G V G + + + G
Sbjct: 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVAD---------G 58
Query: 133 VFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETC 192
+ DI D++ L + V H+AAQ VR + P +N+ G V LLE
Sbjct: 59 MQSEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAI 118
Query: 193 KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY--- 249
+ A+V +S Y + + ++ Y+ +K E + +Y + +
Sbjct: 119 RHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNP 178
Query: 250 ------GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIR----GKRITVYEAPDGASVARD 299
G ++ +R V G D A DI+R + + + + ++ R
Sbjct: 179 ANYGQHGTAVATVRAGNVIGG---GDWALDRIVPDILRAFEQSQPVIIR---NPHAI-RP 231
Query: 300 FTYIDDIVKG--CLAGLDTAKKSTGSGGKKKGPAEFRIFNLG--NTTPVPVSRLVSLLEK 355
+ ++ + + G LA + + G + +N G + PV +V + K
Sbjct: 232 WQHVLEPLSGYLLLA------QKLYTDGAEYAEG----WNFGPNDADATPVKNIVEQMVK 281
Query: 356 ILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSAS 415
A ++ + + + S A+ +LG+ P +L T L+ V W+ ++ +
Sbjct: 282 YWGEGASWQLDGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSGTD 341
Query: 416 A 416
Sbjct: 342 M 342
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 4e-35
Identities = 92/369 (24%), Positives = 148/369 (40%), Gaps = 53/369 (14%)
Query: 69 VKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLL 128
+ + + VLVTG AG++GSH + L + G + DN +N S + L
Sbjct: 1 MTAQLQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSN----STYDSVARLE 56
Query: 129 ERAG--VFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFV 186
+ + D+ D+ L+K+F V+H A V + Q P Y +NI G V
Sbjct: 57 VLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTV 116
Query: 187 NLLETCKSSDPQPAIVWASSSSVYG----VNKKVPFSEKDRTDQPASLYAATKKAGEAI- 241
LLE + + V++SS++VYG +P E+ P + Y TK A E I
Sbjct: 117 VLLELMQQYNV-SKFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPYGHTKYAIENIL 174
Query: 242 ---AHAYNHIYGLSITGLRFFTVYG----------PWGRPD--MAYFFFTRDIIR---GK 283
++ LR+F G P G P+ + Y + + G+
Sbjct: 175 NDLYNSDKK--SWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPY------MAQVAVGR 226
Query: 284 R--ITV----YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFN 337
R + + Y++ DG + RD+ ++ D+ KG +A L + + G R +N
Sbjct: 227 REKLYIFGDDYDSRDGTPI-RDYIHVVDLAKGHIAALQYLEAYNENEGL------CREWN 279
Query: 338 LGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLE 397
LG+ V + K + KV R GDV A A+REL + +E
Sbjct: 280 LGSGKGSTVFEVYHAFCKASGIDLPYKVTG-RRAGDVLNLTAKPDRAKRELKWQTELQVE 338
Query: 398 TGLKKFVRW 406
K +W
Sbjct: 339 DSCKDLWKW 347
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 9e-24
Identities = 72/378 (19%), Positives = 129/378 (34%), Gaps = 58/378 (15%)
Query: 72 TRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLER 130
+ R VL+ G GF+G+H++ L + V GLD ++ L +E
Sbjct: 308 PACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVE- 366
Query: 131 AGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLE 190
D I+ + + + V+ L A A +NP E + + ++
Sbjct: 367 -----GDISIHSEWIEYHVKKCDV---VLPLVAIATPIEYTRNPLRVFELDFEENLRIIR 418
Query: 191 TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT------DQPASLYAATKKAGEAIAHA 244
C + I++ S+S VYG+ F E ++P +Y+ +K+ + + A
Sbjct: 419 YCVKYRKR--IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWA 476
Query: 245 YNHIYGLSITGLRFFTVYGPWGRPDMAYFF----------FTRDIIRGKRITVYEAPDGA 294
Y GL T R F GP R D +++ G I + DG
Sbjct: 477 YGEKEGLQFTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGG 531
Query: 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGN-TTPVPVSRLVSLL 353
R FT I D ++ ++ + I N+GN + L +L
Sbjct: 532 KQKRCFTDIRDGIEALYRIIE----------NAGNRCDGEIINIGNPENEASIEELGEML 581
Query: 354 EKILKVKAETKVLPLPRNG--------------DVQFTHANISLAQRELGYMPTTDLETG 399
+ P DV+ +I A R L + P D++
Sbjct: 582 LASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQET 641
Query: 400 LKKFVRWYLSYYNSASAS 417
+ + + ++L +
Sbjct: 642 IDETLDFFLRTVDLTDKP 659
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 7e-22
Identities = 76/325 (23%), Positives = 138/325 (42%), Gaps = 40/325 (12%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
L+TG AGFVG +++ L ++ V G +R + V +I DI
Sbjct: 15 ALITGVAGFVGKYLANHLTEQNVEVFGT-------------SRNNEAKLPNVEMISLDIM 61
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D + K+ + + ++ HLAA++ V+ + N +N+ G +++L+ + S+ I
Sbjct: 62 DSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRI 121
Query: 202 VWASSSSVYG--VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
+ SS YG + ++ P SE+++ +P S Y +K + +A Y YG+ I R F
Sbjct: 122 LTIGSSEEYGMILPEESPVSEENQL-RPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTF 180
Query: 260 TVYGPWGRPDMAYFFFTRDIIRG-KRITVYEAPDGASV-----ARDFTYIDDIVKGCLAG 313
GP G+ F T+D + I + + V RDFT + DIV+
Sbjct: 181 NHIGP-GQSLG---FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLL 236
Query: 314 LDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP-LPRNG 372
K + ++N+ + + ++ LL + VK +T++ P R
Sbjct: 237 SQYGK-----------TGD--VYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPS 283
Query: 373 DVQFTHANISLAQRELGYMPTTDLE 397
+V + + G+ P LE
Sbjct: 284 EVPTLIGSNKRLKDSTGWKPRIPLE 308
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 88.3 bits (220), Expect = 1e-19
Identities = 62/247 (25%), Positives = 108/247 (43%), Gaps = 49/247 (19%)
Query: 81 TVLVTGAAGFVGSH-VSLALKKRGDG-VLGLD------NFNNYYETSLKKARKGLLERAG 132
+LVTG AGF+GS+ V L+ ++ D N NN K + +
Sbjct: 26 NILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNV---------KSIQDHPN 76
Query: 133 VFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETC 192
+ + +I + LL+ + +++ AA++ V +++NP + ++N+ G V LLE
Sbjct: 77 YYFVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELV 136
Query: 193 KSSDPQPAIVWA------SSSSVYG-VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAY 245
K S+ VYG + K F+E+ P S Y+++K + + IA AY
Sbjct: 137 KK-------YPHIKLVQVSTDEVYGSLGKTGRFTEETPLA-PNSPYSSSKASADMIALAY 188
Query: 246 NHIYGLSITGLRFFTVYGPWGRPDMAYFF-------FTRDIIRGKRITVYEAPDGASVAR 298
Y L + R YGP Y + + + GK++ +Y DG +V R
Sbjct: 189 YKTYQLPVIVTRCSNNYGP-------YQYPEKLIPLMVTNALEGKKLPLYG--DGLNV-R 238
Query: 299 DFTYIDD 305
D+ ++ D
Sbjct: 239 DWLHVTD 245
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 385 QRELGYMPTTDLETGLKKFVRWYL 408
+ E + P E GL++ V+WY
Sbjct: 312 KNEFDWEPKYTFEQGLQETVQWYE 335
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 87.5 bits (218), Expect = 2e-19
Identities = 68/240 (28%), Positives = 109/240 (45%), Gaps = 37/240 (15%)
Query: 81 TVLVTGAAGFVGSH-VSLALKKRGDG-VLGLD------NFNNYYETSLKKARKGLLERAG 132
+LVTG GF+GS+ + L+K D V+ +D N N K L +
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL---------KDLEDDPR 55
Query: 133 VFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETC 192
+ D+ D L+ ++ V+HLAA++ V ++ +P ++ SN+ G LLE+
Sbjct: 56 YTFVKGDVADYELVKELVR--KVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESI 113
Query: 193 KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLS 252
+ +P+ V S+ VYG K F+E DR P+S Y+ATK A + + + Y L+
Sbjct: 114 RRENPEVRFVHVSTDEVYGDILKGSFTENDRLM-PSSPYSATKAASDMLVLGWTRTYNLN 172
Query: 253 ITGLRFFTVYGPWGRPDMAYFF-------FTRDIIRGKRITVYEAPDGASVARDFTYIDD 305
+ R YGP Y F G +I +Y G +V RD+ Y++D
Sbjct: 173 ASITRCTNNYGP-------YQFPEKLIPKTIIRASLGLKIPIYG--TGKNV-RDWLYVED 222
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 385 QRELGYMPTTDLETGLKKFVRWYL 408
R+L + P + G+KK + WYL
Sbjct: 289 TRDLKWRPKYTFDEGIKKTIDWYL 312
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 4e-19
Identities = 65/269 (24%), Positives = 103/269 (38%), Gaps = 78/269 (28%)
Query: 82 VLVTGAAGFVGSH-VSLALKKRGDGVLGLD------NFNNYYETSLKKARKGLLERAGVF 134
+L+TG AGF+GS V +K D V+ +D N + + E
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL---------SDISESNRYN 53
Query: 135 VIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKS 194
ADI D + + +IF VMHLAA++ V ++ P +++E+NI G LLE +
Sbjct: 54 FEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARK 113
Query: 195 SDPQPAIVWASSSS---------------VYG----------VNKKVPFSEKDRTDQPAS 229
W++ VYG F+E P+S
Sbjct: 114 -------YWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYA-PSS 165
Query: 230 LYAATKKAGEAIAHAYNHIYGLSITGLRFFTV------YGPWGRPDMAYFF-------FT 276
Y+A+K + + + A+ YGL V YGP Y F
Sbjct: 166 PYSASKASSDHLVRAWRRTYGLPT------IVTNCSNNYGP-------YHFPEKLIPLVI 212
Query: 277 RDIIRGKRITVYEAPDGASVARDFTYIDD 305
+ + GK + +Y G + RD+ Y++D
Sbjct: 213 LNALEGKPLPIYG--KGDQI-RDWLYVED 238
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 4e-04
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 385 QRELGYMPTTDLETGLKKFVRWYLS 409
RELG+ P E+G++K V WYL+
Sbjct: 312 SRELGWKPLETFESGIRKTVEWYLA 336
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 7e-19
Identities = 54/290 (18%), Positives = 92/290 (31%), Gaps = 50/290 (17%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+L+ G G +G ++ L +G V GL S + AGV + AD+
Sbjct: 5 KILIAGC-GDLGLELARRLTAQGHEVTGLR-------RSAQPM------PAGVQTLIADV 50
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
L I ++ ++ A + Y S + G N L + + Q
Sbjct: 51 TRPDTLASIVHLR--PEILVYCVAASEY----SDEHYRLSYVEGLRNTLSALEGAPLQ-H 103
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
+ + SS+ VYG + E D EA+ S T LRF
Sbjct: 104 VFFVSSTGVYGQEVEEWLDE-DTPPIAKDFSGKRMLEAEALLA------AYSSTILRFSG 156
Query: 261 VYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKS 320
+YGP GR M T + + + + DD +
Sbjct: 157 IYGP-GRLRMIRQAQTPEQW-----------PARNAWTNRIHRDDGAAFIAYLIQ----- 199
Query: 321 TGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR 370
++ R++ + + P+PV L+ L + P +
Sbjct: 200 -----QRSHAVPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATPPVQ 244
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 82.9 bits (206), Expect = 9e-18
Identities = 63/249 (25%), Positives = 101/249 (40%), Gaps = 54/249 (21%)
Query: 82 VLVTGAAGFVGSHVSLAL------KKRGDGVLGLD------NFNNYYETSLKKARKGLLE 129
+LVTG AGF+GSH L D V+ LD N N +
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANL---------APVDA 53
Query: 130 RAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLL 189
+ + DI D LL + ++H AA++ V ++ + + E+N+ G LL
Sbjct: 54 DPRLRFVHGDIRDAGLLARELR--GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLL 111
Query: 190 ETCKSSDPQPAIVWA------SSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAH 243
+ + S++ VYG ++E + P S YAA+K + +A
Sbjct: 112 QCAVDA-------GVGRVVHVSTNQVYGSIDSGSWTESSPLE-PNSPYAASKAGSDLVAR 163
Query: 244 AYNHIYGLSITGLRFFTVYGPWGRPDMAYFF-------FTRDIIRGKRITVYEAPDGASV 296
AY+ YGL + R YGP Y F +++ G + +Y DGA+V
Sbjct: 164 AYHRTYGLDVRITRCCNNYGP-------YQHPEKLIPLFVTNLLDGGTLPLYG--DGANV 214
Query: 297 ARDFTYIDD 305
R++ + DD
Sbjct: 215 -REWVHTDD 222
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 9e-05
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 385 QRELGYMPTTDLETGLKKFVRWYL 408
+RELGY P GL + VRWY
Sbjct: 289 ERELGYRPQVSFADGLARTVRWYR 312
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 8e-17
Identities = 58/255 (22%), Positives = 101/255 (39%), Gaps = 58/255 (22%)
Query: 81 TVLVTGAAGFVGSH-VSLALKKRGDG-VLGLD------NFNNYYETSLKKARKGLLERAG 132
++VTG AGF+GS+ V D V LD N N L+ +
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKAN-----LEA-----ILGDR 55
Query: 133 VFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETC 192
V ++ DI D L+DK+ ++H AA++ ++ +P+ ++ +N G LLE
Sbjct: 56 VELVVGDIADAELVDKLAA--KADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAA 113
Query: 193 K---------SSD------PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKA 237
+ S+D P + F+ + + P+S Y++TK A
Sbjct: 114 RKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGE-----KFTAETNYN-PSSPYSSTKAA 167
Query: 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFF-------FTRDIIRGKRITVYEA 290
+ I A+ +G+ T YGP Y +I+ G + +Y
Sbjct: 168 SDLIVKAWVRSFGVKATISNCSNNYGP-------YQHIEKFIPRQITNILAGIKPKLYG- 219
Query: 291 PDGASVARDFTYIDD 305
+G +V RD+ + +D
Sbjct: 220 -EGKNV-RDWIHTND 232
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 2e-15
Identities = 55/367 (14%), Positives = 97/367 (26%), Gaps = 58/367 (15%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDG-----VLGLDNFNNYYETSLKKARKGLLERAGVFV 135
L+ G G +G+ ++ L V G+ + R E +
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR----------RTRPAWHEDNPINY 52
Query: 136 IDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
+ DI+D + T V H+ E+N F N+L+ +
Sbjct: 53 VQCDISDPDDSQAK--LSPLTDVTHVFYVTWAN--RSTEQENCEANSKMFRNVLDAVIPN 108
Query: 196 DPQPA-IVWASSSSVY---------GVNKKVPFSEKD-RTDQPASLYAATKKAGEAIAHA 244
P I + Y + P++E R Y E +
Sbjct: 109 CPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKK 168
Query: 245 YNHIYGLSITGLRFFTVYGPWGRPDM-------AYFFFTRDIIRGKRITVYEAPDGASVA 297
GL+ + R ++G M Y + GK +
Sbjct: 169 ----EGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKH--EGKVLRFTGCKAAWDGY 222
Query: 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKIL 357
D + D I + + A+ FN+ N +L +
Sbjct: 223 SDCSDADLIAEHHIWAAVDPY------------AKNEAFNVSNGDVFKWKHFWKVLAEQF 270
Query: 358 KVKAETKVLPLPRNGDVQFTHANISLAQ--RELGYMPTTDLETGLKKFVRWYLSYYNS-A 414
V+ + + RE G PT + G+ F L
Sbjct: 271 GVECGEYEEGVDLKLQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLD 330
Query: 415 SASPSRK 421
S + S++
Sbjct: 331 SMNKSKE 337
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-14
Identities = 31/210 (14%), Positives = 66/210 (31%), Gaps = 24/210 (11%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+++ GA+GFVGS + RG V + ++ K +E + V AD+
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAV----------VRHPEKIKIENEHLKVKKADV 55
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
+ + ++ V+ N + I ++ +++ K +
Sbjct: 56 SSLDEVCEVCK--GADAVISAFN------PGWNNPDIYDETIKVYLTIIDGVKKAGVNR- 106
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
+ + + + D + P ++ K GE + +
Sbjct: 107 FLMVGGAGSLFIAPGLRL--MDSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPAA 164
Query: 261 VYGPW---GRPDMAYFFFTRDIIRGKRITV 287
P GR + DI+ I+V
Sbjct: 165 DMRPGVRTGRYRLGKDDMIVDIVGNSHISV 194
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 5e-12
Identities = 53/327 (16%), Positives = 101/327 (30%), Gaps = 62/327 (18%)
Query: 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGL-----------------DNFNNYY 116
S TVL+TGA GF+G ++ L L +R D L F++
Sbjct: 68 GPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGD 127
Query: 117 ETSLKKARKGLLERAGVFVIDADINDKSL------LDKIFNVVAFTHVMHLAAQAGVRYA 170
L+ ++ +R + V+ D ++ L ++ V ++ AA V
Sbjct: 128 PELLRHFKELAADR--LEVVAGDKSEPDLGLDQPMWRRLAETV--DLIVDSAAM--VNAF 181
Query: 171 MQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL 230
+ N+AG L+ ++ +P + S++ V + F+E +
Sbjct: 182 P--YHELFGPNVAGTAELIRIALTTKLKP-FTYVSTADVGAAIEPSAFTEDADIRVISPT 238
Query: 231 ----------YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGP------WGRPDMAYFF 274
Y +K AGE + N + L + R + D
Sbjct: 239 RTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRM 298
Query: 275 FTRDIIRGKRITVYEAPDGASVAR----DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGP 330
+ G + PD + D + + + S
Sbjct: 299 VLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGS--------SL 350
Query: 331 AEFRIFNLGN--TTPVPVSRLVSLLEK 355
A F +++ N + + V L +
Sbjct: 351 AGFATYHVMNPHDDGIGLDEYVDWLIE 377
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 2e-11
Identities = 37/221 (16%), Positives = 71/221 (32%), Gaps = 38/221 (17%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKAR---KGLLERAGVFVIDA 138
+ + GA G GS + K RG V + R K + ++
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAI-------------VRNAGKITQTHKDINILQK 49
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
DI D +L D L+ Q V A E ++ +L+ +
Sbjct: 50 DIFDLTLSD-------------LSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSP 96
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
+V ++S+ E + + A Y + + + H +H S T +
Sbjct: 97 RLLVVGGAASLQIDEDGNTLLE-SKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISP 155
Query: 259 FTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299
++ P R T D GK ++ + + ++ +
Sbjct: 156 SAMFEPGER--------TGDYQIGKDHLLFGSDGNSFISME 188
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 4e-10
Identities = 45/330 (13%), Positives = 104/330 (31%), Gaps = 67/330 (20%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
T+L G G+ +S AL +G ++G + + + +G +
Sbjct: 7 TLLSFGH-GYTARVLSRALAPQGWRIIGTS-------RNPDQMEA--IRASGAEPLLWPG 56
Query: 141 NDKSLLDKIFNVVAFTHVM-HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
+ SL TH++ A +G + + A
Sbjct: 57 EEPSLDG-------VTHLLISTAPDSGGDPVLAA---LGDQIAARAAQF----------R 96
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
+ + S+++VYG + + ++ P + + + + L + R
Sbjct: 97 WVGYLSTTAVYG-DHDGAWVDETTPLTPTAARG---RWRVMAEQQWQAVPNLPLHVFRLA 152
Query: 260 TVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319
+YGP GR + +G + + S +++DI + A +
Sbjct: 153 GIYGP-GRGPFSKL------GKGGIRRIIKPGQVFS----RIHVEDIAQVLAASMARPDP 201
Query: 320 STGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK-------AETKVLPLPRNG 372
++N+ + PVP +++ ++ + + + P+ R+
Sbjct: 202 G-------------AVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSF 248
Query: 373 DVQFTHANISLAQRELGYMPT-TDLETGLK 401
+ + ELG + GL+
Sbjct: 249 YSENKRVRNDRIKEELGVRLKYPNYRVGLE 278
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 2e-08
Identities = 25/188 (13%), Positives = 51/188 (27%), Gaps = 25/188 (13%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARK--GLLERAGVFVIDAD 139
+ V GA G GS + ++RG VL + R +R G V
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAV-------------VRDPQKAADRLGATVATLV 49
Query: 140 INDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
L + + V V+ + + ++ +L+ ++SD
Sbjct: 50 KEPLVLTEADLDSVD--AVVDALSVPW-------GSGRGYLHLDFATHLVSLLRNSDT-L 99
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
A+ S+S+ P + + ++ G+
Sbjct: 100 AVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNWIGISPS 159
Query: 260 TVYGPWGR 267
+
Sbjct: 160 EAFPSGPA 167
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 42/193 (21%), Positives = 59/193 (30%), Gaps = 33/193 (17%)
Query: 70 KSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLG----LDNFNNYYETSLKKARK 125
K G VLVTGA GFV SHV L + G V G +
Sbjct: 2 KIDNAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK-LANLQKRWDAKYP 60
Query: 126 GLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGF 185
G E + D+ + D++ V H+A+ + V I G
Sbjct: 61 GRFE----TAVVEDMLKQGAYDEVIKGA--AGVAHIASVVSFSN---KYDEVVTPAIGGT 111
Query: 186 VNLLETCKSSDPQPAIVWASSS-SVYGVNKKVP---FSEKDRTD---------------Q 226
+N L ++ V SS+ S V EK +
Sbjct: 112 LNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQK 171
Query: 227 PASLYAATKKAGE 239
+YAA+K E
Sbjct: 172 SLWVYAASKTEAE 184
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 32/167 (19%), Positives = 59/167 (35%), Gaps = 22/167 (13%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
L+TGA+G +G +S L +R + + ++ L D+
Sbjct: 3 TLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKL------------------DLT 44
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D L+ +++ AA V + N +++ K D I
Sbjct: 45 DFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID--SYI 102
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI 248
V S+ V+ K + E+D + P + Y +K GE A + +
Sbjct: 103 VHISTDYVFDGEKG-NYKEEDIPN-PINYYGLSKLLGETFALQDDSL 147
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 8e-07
Identities = 33/154 (21%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLG-LDNFNNYYETSLKKARKGLLERAGVF 134
++ TV VTGA+GF+GS + + L +RG V + + N + ++
Sbjct: 2 GSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLW 61
Query: 135 VIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLETCK 193
AD+ D+ D+ + T V H+A + + ++P N ++ I G + ++++C
Sbjct: 62 K--ADLADEGSFDEA--IKGCTGVFHVA--TPMDFESKDPENEVIKPTIEGMLGIMKSCA 115
Query: 194 SSDPQPAIVWASSSS--VYGVNKKVPFSEKDRTD 225
++ +V+ SS+ ++ + E +D
Sbjct: 116 AAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSD 149
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 11/150 (7%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGL--DNFNNYYETSLKKARKGLLERAGVFVIDA 138
V VTG GF+GS + +L + G V + + S G E+ F A
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFN--A 60
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLETCKSSDP 197
D+++ + + H A + + +A+ P + + G + +L+ C +S
Sbjct: 61 DLSNPDSFAAA--IEGCVGIFHTA--SPIDFAVSEPEEIVTKRTVDGALGILKACVNSKT 116
Query: 198 QPAIVWASSSS--VYGVNKKVPFSEKDRTD 225
++ SS S + K E D +D
Sbjct: 117 VKRFIYTSSGSAVSFNGKDKDVLDESDWSD 146
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 2e-06
Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 55/292 (18%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+L+ GA G++G HV+ A G L + S K + +G ++ I
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 141 NDKSLLDKIFN----VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD 196
+D + L + V++ + + +Q VN+++ K
Sbjct: 66 DDHASLVEAVKNVDVVISTVGSLQIESQ---------------------VNIIKAIKEVG 104
Query: 197 PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGL 256
S +G + + +PA K A Y +
Sbjct: 105 TVKRFF----PSEFGND-----VDNVHAVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSN- 154
Query: 257 RFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316
F G + R ++ + + F +DI + +D
Sbjct: 155 -CF--AGYFLRSLAQAGLT---APPRDKVVIL---GDGNARVVFVKEEDIGTFTIKAVDD 205
Query: 317 AKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL 368
+ + ++ + ++ LV+L EK + E +P
Sbjct: 206 PRTLNKT-----------LYLRLPANTLSLNELVALWEKKIDKTLEKAYVPE 246
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 3e-06
Identities = 41/203 (20%), Positives = 65/203 (32%), Gaps = 57/203 (28%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
VLVTGA G +G V ++ +G RA ++
Sbjct: 4 RVLVTGATGLLGRAVHKEFQQNNWHAVGCG-----------------FRRARPKFEQVNL 46
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCK------- 193
D + + I + ++H AA+ P++ + N+ NL +
Sbjct: 47 LDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLI 106
Query: 194 --SSDPQPAIVWASSSSVY---GVNKKVPFSEKDRTDQPASLYAATKKAGE-AIAHAY-N 246
SSD Y G P+ E+D P +LY TK GE A+
Sbjct: 107 YISSD-------------YVFDG--TNPPYREEDIPA-PLNLYGKTKLDGEKAVLENNLG 150
Query: 247 HIYGLSITGLRFFT--VYGPWGR 267
+ LR +YG +
Sbjct: 151 AA----V--LR--IPILYGEVEK 165
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 4e-06
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 133 VFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETC 192
+ D D+ D + + V +LAAQ+ V + P + + G +LLE
Sbjct: 65 IQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAI 124
Query: 193 KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD-QPASLYAATKKAGEAIAHAYNHIYGL 251
+ P+ AS+S ++G+ + E T P S Y K G I Y +GL
Sbjct: 125 RQFSPETRFYQASTSEMFGLIQAERQDEN--TPFYPRSPYGVAKLYGHWITVNYRESFGL 182
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 4e-06
Identities = 51/292 (17%), Positives = 86/292 (29%), Gaps = 64/292 (21%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDG--VLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
TVLVTGA+G G V LK+ D GL ++ A+ V
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGL----------VRSAQGKEKIGGEADVFIG 55
Query: 139 DINDKSLLDKIFN----VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIA-------GFVN 187
DI D ++ F +V T + P E G N
Sbjct: 56 DITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKN 115
Query: 188 LLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNH 247
++ K + + +V G + K+ E
Sbjct: 116 QIDAAKVAGVKHIVV----VGSMGGTN----PDHPLNKLGNGNILVWKRKAEQYLAD--- 164
Query: 248 IYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIV 307
G T +R + G R+++ GK + + +V R D+
Sbjct: 165 -SGTPYTIIRAGGLLDKEGG--------VRELLVGKDDELLQTDTK-TVPR-----ADVA 209
Query: 308 KGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT---TPVPVSRLVSLLEKI 356
+ C+ L + A+ + F+LG+ T P +L ++
Sbjct: 210 EVCIQALLFEE------------AKNKAFDLGSKPEGTSTPTKDFKALFSQV 249
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 8e-06
Identities = 47/242 (19%), Positives = 86/242 (35%), Gaps = 28/242 (11%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLG----LDNFNNYYETSLKKARKGLLERAGVFVI 136
T V G GFV S + L ++G V DN L+ G L+ +
Sbjct: 11 TACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKK-VSHLLELQELGDLK-----IF 64
Query: 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLETCKSS 195
AD+ D+ + + V H+A V +A ++P N ++ I G VN+++ C +
Sbjct: 65 RADLTDELSFEAP--IAGCDFVFHVA--TPVHFASEDPENDMIKPAIQGVVNVMKACTRA 120
Query: 196 DPQPAIVWASS-SSVYGVN---KKVPFSEKDRTD--------QPASLYAATKKAGEAIAH 243
++ SS ++V + EK+ TD P Y A+K E A
Sbjct: 121 KSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAW 180
Query: 244 AYNHIYGLSITGLRFFTVYGPWGRPDM-AYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302
+ + + + + G D+ + +I G + ++ +
Sbjct: 181 KFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSI 240
Query: 303 ID 304
Sbjct: 241 AH 242
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Length = 345 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 133 VFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETC 192
V +I D+ + S + + V V +LAAQ+ V + + P E + G + +LE
Sbjct: 54 VKIIHMDLLEFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEAL 113
Query: 193 KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD-QPASLYAATKKAGEAIAHAYNHIYGL 251
++ P AS+S ++G +++P +EK T P S YA K G I Y Y +
Sbjct: 114 RTVKPDTKFYQASTSEMFGKVQEIPQTEK--TPFYPRSPYAVAKLFGHWITVNYREAYNM 171
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Length = 321 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 65/360 (18%), Positives = 120/360 (33%), Gaps = 73/360 (20%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
V + G G VGS + L++RG + + R L ++
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRG------------DVELVLRTRDEL-----------NLL 42
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYA-MQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D + F V AA+ G A P ++ N+ N++ +D
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-K 101
Query: 201 IVWASSSSVYGVNKKVPFSEK-------DRTDQPASLYAATKKAGEAIAHAYNHIYGLSI 253
+++ SS +Y K P +E + T++P YA K AG + +YN YG
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQYGRDY 158
Query: 254 TGLRFFTVYGPWGR--PDMAYFF--FTRDIIRGKRITVYEAP---DGASVARDFTYIDDI 306
+ +YGP P ++ R + G + R+F ++DD+
Sbjct: 159 RSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSG-TPMREFLHVDDM 217
Query: 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAET--- 363
+ ++ A + + N+G + L + K++ K
Sbjct: 218 AAASIHVMELAHEVWLENTQPMLS----HINVGTGVDCTIRELAQTIAKVVGYKGRVVFD 273
Query: 364 ---------KVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSA 414
K+L +++ +LG+ LE GL +W+L +
Sbjct: 274 ASKPDGTPRKLL-------------DVTRL-HQLGWYHEISLEAGLASTYQWFLENQDRF 319
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 5e-05
Identities = 33/245 (13%), Positives = 66/245 (26%), Gaps = 55/245 (22%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGL-DNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+L+ G G +G H+ A K G+ L K+ + GV +++ D
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63
Query: 140 INDKSLLDKIFN----VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
IND L K V+ + + Q V +++ K +
Sbjct: 64 INDHETLVKAIKQVDIVICAAGRLLIEDQ---------------------VKIIKAIKEA 102
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITG 255
S +G++ D + ++ I G+ T
Sbjct: 103 GNVKKFF----PSEFGLD----VDRHDAVEPVRQVFEEKASIRRVIEAE-----GVPYTY 149
Query: 256 LRFFTVYGPWGRPDMAYFF-----FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310
L + YF ++ + +V + D+
Sbjct: 150 LC----CHAF----TGYFLRNLAQLDATDPPRDKVVIL---GDGNVKGAYVTEADVGTFT 198
Query: 311 LAGLD 315
+ +
Sbjct: 199 IRAAN 203
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 36/190 (18%), Positives = 68/190 (35%), Gaps = 39/190 (20%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
V++TGA G +G + L + D DI
Sbjct: 8 VIITGANGQLGKQLQEELNPEEYDIYPFD------------------------KKLLDIT 43
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
+ S + ++ + ++H AA V A + + N G N+ + +
Sbjct: 44 NISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KL 101
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE-AIAHAY-NHIYGLSITGLRFF 259
V+ S+ V+ ++ + E P ++Y A+K AGE + + + I +R
Sbjct: 102 VYISTDYVFQGDRPEGYDEFHNPA-PINIYGASKYAGEQFVKELHNKYF----I--VR-- 152
Query: 260 T--VYGPWGR 267
T +YG +G
Sbjct: 153 TSWLYGKYGN 162
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 6e-05
Identities = 35/244 (14%), Positives = 71/244 (29%), Gaps = 43/244 (17%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
VL+ G G++G + A G L K ++ G +I+A +
Sbjct: 6 RVLIVGGTGYIGKRIVNASISLGHPTYVL-FRPEVVSNIDKVQMLLYFKQLGAKLIEASL 64
Query: 141 NDKSLLDKIFN---VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
+D L VV + +I + L+E K +
Sbjct: 65 DDHQRLVDALKQVDVVISALAGGVL----------------SHHILEQLKLVEAIKEAGN 108
Query: 198 QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLR 257
+ S +G++ P + + + +K AI A + T +
Sbjct: 109 IKRFLP----SEFGMD---PDIMEHALQPGSITFIDKRKVRRAIEAA-----SIPYTYVS 156
Query: 258 ---FFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGL 314
F + + R ++ +Y +V + DD+ + +
Sbjct: 157 SNMFAGYFAGSLAQLDGHMMPPR-----DKVLIY---GDGNVKGIWVDEDDVGTYTIKSI 208
Query: 315 DTAK 318
D +
Sbjct: 209 DDPQ 212
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 44/168 (26%), Positives = 62/168 (36%), Gaps = 27/168 (16%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+TGA G +G + LK + V+ D V D DI
Sbjct: 15 ILITGANGQLGREIQKQLKGKNVEVIPTD------------------------VQDLDIT 50
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
+ ++K FN V++ AA V + + + N G NL S I
Sbjct: 51 NVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG--AEI 108
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY 249
V S+ V+ K P +E D + P S Y TK GE A N Y
Sbjct: 109 VQISTDYVFDGEAKEPITEFDEVN-PQSAYGKTKLEGENFVKALNPKY 155
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 25/232 (10%), Positives = 61/232 (26%), Gaps = 44/232 (18%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+++ G G++G + A T + GV +I+ ++
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 141 NDKSLLDKIFN----VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD 196
+ + + V++ +++Q ++++ K++
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFPMISSQ---------------------IHIINAIKAAG 104
Query: 197 PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGL 256
+ S +G ++ + P K+ A Y
Sbjct: 105 NIKRFL----PSDFGCE-----EDRIKPLPPFESVLEKKRIIRRAIEAAALPYTYVSANC 155
Query: 257 RFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVK 308
F + + + R I +Y Y +DI K
Sbjct: 156 -FGAYFVNYL------LHPSPHPNRNDDIVIY---GTGETKFVLNYEEDIAK 197
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 32/248 (12%), Positives = 70/248 (28%), Gaps = 55/248 (22%)
Query: 81 TVLVTGAAGFVGSH-VSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139
+ + GAAG + + L + + +++ V VI+
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITLYGR------QLKTRIPPEIIDHERVTVIEGS 60
Query: 140 INDKSLLDKIFN---VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD 196
+ L++ VV + + A + A+ N
Sbjct: 61 FQNPGXLEQAVTNAEVVFVGAMESGSDMASIVKALSRXN--------------------- 99
Query: 197 PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGL 256
++ S + + G V + + P S ++A + L+ T L
Sbjct: 100 -IRRVIGVSMAGLSG-EFPVALEKWTFDNLPISYVQGERQARNVLRE-----SNLNYTIL 152
Query: 257 RFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316
R + + + + + I + A V+R + +VK L
Sbjct: 153 R------------LTWLYNDPEXTDYELIPEGAQFNDAQVSR-----EAVVKAIFDILHA 195
Query: 317 AKKSTGSG 324
A ++
Sbjct: 196 ADETPFHR 203
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 21/99 (21%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+ V GA G +G ++ LK + V D+ L L R GV D
Sbjct: 8 ICVVGA-GKIGQMIAALLKTSSNYSVTVADH-------DLAALAV--LNRMGVATKQVDA 57
Query: 141 NDKSLL-------DKIFNVVAFTH---VMHLAAQAGVRY 169
D++ L D + + F + A AG Y
Sbjct: 58 KDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHY 96
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 14/114 (12%), Positives = 40/114 (35%), Gaps = 20/114 (17%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+ + G+ G VG + +L + + K + D D
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAG---------ARKVEQVPQYNNVKAVHFDVDWT 53
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS 195
+ + ++ + A +++++ G S ++ ++ G V L++ + +
Sbjct: 54 PEEMAKQLHGMDA---IINVSGSGG--------KSLLKVDLYGAVKLMQAAEKA 96
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 5e-04
Identities = 24/167 (14%), Positives = 47/167 (28%), Gaps = 40/167 (23%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSL--KKARKGLLERAGVFVIDA 138
VL+ GA G + HV L + T + A+ +I
Sbjct: 25 NVLILGAGGQIARHVINQLADKQTIKQ----------TLFARQPAKIHKPYPTNSQIIMG 74
Query: 139 DINDKSLLDKIFN----VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKS 194
D+ + + L + V A L QA +++ K+
Sbjct: 75 DVLNHAALKQAMQGQDIVYANLTGEDLDIQA--------------------NSVIAAMKA 114
Query: 195 SDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAI 241
D + +++ S G+ +VP + + +
Sbjct: 115 CDVK-RLIFVLSL---GIYDEVPGKFVEWNNAVIGEPLKPFRRAADA 157
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Length = 372 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D++D S L +I V V +L A + V + ++P + + G + LLE + +
Sbjct: 63 DLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLE 122
Query: 199 PAIVW--ASSSSVYGVNKKVPFSEKDRTD-QPASLYAATKKAGEAIAHAYNHIYGL 251
+ AS+S +YG+ +++P E T P S YA K I Y YG+
Sbjct: 123 KKTRFYQASTSELYGLVQEIPQKET--TPFYPRSPYAVAKLYAYWITVNYRESYGM 176
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 375 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
D+ D + L KI N V T + +L AQ+ V+ + + + G + LL+ K+
Sbjct: 86 GDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGL 145
Query: 198 QPAIVW--ASSSSVYGVNKKVPFSEKDRTD-QPASLYAATKKAGEAIAHAYNHIYGL 251
++ + AS+S +YG +++P E T P S Y A K I + Y L
Sbjct: 146 INSVKFYQASTSELYGKVQEIPQKET--TPFYPRSPYGAAKLYAYWIVVNFREAYNL 200
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 6e-04
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 2/80 (2%)
Query: 71 STRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLER 130
+ P + VL+ GA GF+G V+ A L + K LE
Sbjct: 2 TVSPVPSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGP--RSPSKAKIFKALED 59
Query: 131 AGVFVIDADINDKSLLDKIF 150
G ++ IN++ ++KI
Sbjct: 60 KGAIIVYGLINEQEAMEKIL 79
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 60 GGPQWEKQIVKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGL 109
G +G+ VLV GA G V ++ LK +G + +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAM 51
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 6e-04
Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 7/100 (7%)
Query: 69 VKSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLL 128
V S +G +V G VG + L G V+ + A +
Sbjct: 109 VVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCG----RKLDKAQAAADSVN 164
Query: 129 ERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVR 168
+R V V A+ D V H + A G+
Sbjct: 165 KRFKVNVTAAETADD---ASRAEAVKGAHFVFTAGAIGLE 201
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 424 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 100.0 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.97 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.97 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.97 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.97 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.97 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.96 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.96 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.96 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.96 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.96 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.96 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.96 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.96 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.96 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.96 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.96 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.96 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.96 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.95 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.95 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.95 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.95 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.95 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.95 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.95 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.95 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.95 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.95 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.95 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.95 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.95 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.95 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.95 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.95 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.95 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.95 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.95 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.95 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.95 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.95 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.95 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.95 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.95 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.95 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.95 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.95 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.95 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.95 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.95 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.95 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.95 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.95 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.95 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.95 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.95 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.95 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.95 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.95 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.95 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.95 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.95 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.95 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.95 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.95 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.95 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.95 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.95 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.95 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.95 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.95 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.95 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.95 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.95 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.95 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.95 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.95 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.95 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.95 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.94 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.94 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.94 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.94 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.94 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.94 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.94 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.94 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.94 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.94 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.94 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.94 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.94 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.94 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.94 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.94 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.94 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.94 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.94 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.94 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.94 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.94 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.94 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.94 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.94 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.94 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.94 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.94 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.94 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.94 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.94 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.94 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.94 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.94 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.94 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.94 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.94 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.94 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.94 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.94 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.94 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.94 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.94 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.94 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.94 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.94 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.94 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.94 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.94 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.94 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.94 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.94 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.94 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.94 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.94 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.94 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.94 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.94 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.94 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.94 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.94 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.94 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.94 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.94 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.94 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.94 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.94 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.93 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.93 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.93 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.93 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.93 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.93 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.93 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.93 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.93 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.93 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.93 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.93 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.93 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.93 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.93 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.93 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.93 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.93 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.93 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.93 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.93 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.93 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.93 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.93 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.93 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.93 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.93 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.93 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.93 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.93 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.93 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.93 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.93 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.93 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.93 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.93 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.92 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.92 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.92 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.92 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.92 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.92 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.92 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.92 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.92 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.92 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.92 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.92 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.92 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.92 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.92 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.92 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.92 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.92 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.92 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.92 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.92 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.92 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.91 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.91 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.91 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.91 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.91 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.91 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.91 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.9 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.9 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.89 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.89 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.88 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.88 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.88 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.88 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.87 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.87 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.86 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.84 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.84 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.83 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.83 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.83 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.8 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.76 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.76 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.76 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.75 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.74 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.73 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.73 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.69 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.69 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.67 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.5 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.44 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.15 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.14 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.13 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.98 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.91 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.85 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.8 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.8 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.73 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.65 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.6 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.59 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.48 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.46 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.42 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.4 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.34 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.32 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.29 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.29 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.24 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.16 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.15 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.05 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.0 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.97 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.9 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.83 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.83 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.82 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.81 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.79 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.78 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.76 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.71 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.7 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.69 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.68 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.67 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.67 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.67 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.66 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.66 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.66 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.65 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.63 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 97.63 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.59 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.59 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.58 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.56 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.56 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.55 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.55 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.54 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.54 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.54 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.53 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.52 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.52 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.51 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.49 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.48 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.47 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.46 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.45 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.44 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.4 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.38 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.36 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.35 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.29 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.28 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.27 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.26 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.22 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.22 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.2 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.2 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.2 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.19 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.17 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.17 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.16 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.16 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.15 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.15 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.14 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.14 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.1 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.09 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.07 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.07 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.06 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.04 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.03 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.02 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 96.99 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.97 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.95 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.94 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.91 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.88 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.86 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.79 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.79 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.78 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.76 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.74 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.72 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.72 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.7 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.68 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.66 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.65 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.65 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 96.64 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.6 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.59 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.56 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.55 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 96.55 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.55 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.54 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.51 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 96.5 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.5 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.49 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.47 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.41 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.41 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 96.39 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 96.38 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 96.36 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.35 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.34 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.31 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.29 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.29 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.29 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.29 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.28 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.27 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.26 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.26 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.26 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.25 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.24 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.23 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.21 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 96.2 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.18 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.18 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.16 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 96.15 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.14 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.13 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.1 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 96.07 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.05 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 96.04 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.04 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 96.02 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.02 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.98 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.98 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.97 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 95.97 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.96 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.95 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.95 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 95.93 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 95.93 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 95.92 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 95.91 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 95.91 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 95.91 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 95.9 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.9 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.88 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.87 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.87 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 95.87 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 95.86 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.86 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=376.96 Aligned_cols=319 Identities=29% Similarity=0.476 Sum_probs=269.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhh--hccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL--LERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+.+|+||||||+||||++|+++|+++|++|++++|................ ....+++++.+|++|.+++.++++++
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 101 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV 101 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence 3568999999999999999999999999999999997765443332222110 01168999999999999999999955
Q ss_pred CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 042406 154 AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAA 233 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~ 233 (424)
|+|||+||.........++...+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.
T Consensus 102 --d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~ 177 (351)
T 3ruf_A 102 --DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-SFTYAASSSTYGDHPALPKVEENIG-NPLSPYAV 177 (351)
T ss_dssp --SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHH
T ss_pred --CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEecHHhcCCCCCCCCccCCCC-CCCChhHH
Confidence 9999999987777777788899999999999999999999875 9999999999998888889998876 78899999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----CcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHH
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD----MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKG 309 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 309 (424)
+|+++|.+++.++++.|++++++||++||||+.... .+++.++..+..+.++.++ ++++..++|+|++|+|++
T Consensus 178 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~Dva~a 254 (351)
T 3ruf_A 178 TKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYIN---GDGETSRDFCYIDNVIQM 254 (351)
T ss_dssp HHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEe---CCCCeEEeeEEHHHHHHH
Confidence 999999999999988899999999999999987654 5677888899999998887 678899999999999999
Q ss_pred HHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccccccc----CCCCCCcccccCChHHHH
Q 042406 310 CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP----LPRNGDVQFTHANISLAQ 385 (424)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~----~~~~~~~~~~~~d~s~~~ 385 (424)
++.++..... ..+++||+++++++|+.|+++.+.+.+|.+......+ .....+.....+|++|++
T Consensus 255 ~~~~~~~~~~-----------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 323 (351)
T 3ruf_A 255 NILSALAKDS-----------AKDNIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYREFRSGDVRHSQADVTKAI 323 (351)
T ss_dssp HHHHHTCCGG-----------GCSEEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEECCCTTCCSBCCBCCHHHH
T ss_pred HHHHHhhccc-----------cCCCEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccCCCCCccceeeeCHHHHH
Confidence 9999887322 2238999999999999999999999999843221111 122445566789999999
Q ss_pred hHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 386 RELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 386 ~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
++|||+|+++++++|+++++||+++.+
T Consensus 324 ~~lG~~p~~~~~~~l~~~~~~~~~~~~ 350 (351)
T 3ruf_A 324 DLLKYRPNIKIREGLRLSMPWYVRFLK 350 (351)
T ss_dssp HHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998764
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-48 Score=376.09 Aligned_cols=318 Identities=22% Similarity=0.374 Sum_probs=260.8
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
...+++|+||||||+||||++|+++|+++| ++|++++|........ .........+++++.+|++|.+++.++++
T Consensus 19 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 95 (346)
T 4egb_A 19 YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLN---NVKSIQDHPNYYFVKGEIQNGELLEHVIK 95 (346)
T ss_dssp -----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGG---GGTTTTTCTTEEEEECCTTCHHHHHHHHH
T ss_pred ccccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchh---hhhhhccCCCeEEEEcCCCCHHHHHHHHh
Confidence 345678999999999999999999999999 6788888865221111 11112234689999999999999999999
Q ss_pred ccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCC-CCCCCCCCCCCCCCCCh
Q 042406 152 VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVN-KKVPFSEKDRTDQPASL 230 (424)
Q Consensus 152 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~-~~~~~~e~~~~~~~~~~ 230 (424)
+.++|+|||+||.........+++..+++|+.|+.+++++|++.+++ +|||+||.++||.. ...+++|+++. .|.+.
T Consensus 96 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vy~~~~~~~~~~E~~~~-~p~~~ 173 (346)
T 4egb_A 96 ERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI-KLVQVSTDEVYGSLGKTGRFTEETPL-APNSP 173 (346)
T ss_dssp HHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTS-EEEEEEEGGGGCCCCSSCCBCTTSCC-CCCSH
T ss_pred hcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeCchHHhCCCCcCCCcCCCCCC-CCCCh
Confidence 86679999999987766566778899999999999999999999875 99999999999976 45678888866 78899
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHH
Q 042406 231 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 310 (424)
|+.+|+++|.+++.+++++|++++++||+.||||+.....+++.++..+..+.++.++ ++++..++|+|++|+|+++
T Consensus 174 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~ 250 (346)
T 4egb_A 174 YSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLY---GDGLNVRDWLHVTDHCSAI 250 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEE---TTSCCEECEEEHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceee---CCCCeEEeeEEHHHHHHHH
Confidence 9999999999999999888999999999999999887777888899999999998887 6788999999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCC
Q 042406 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGY 390 (424)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~ 390 (424)
+.+++.+.. +++||+++++++|+.|+++.+.+.+|.+............+.....+|++|++++|||
T Consensus 251 ~~~~~~~~~-------------g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~ 317 (346)
T 4egb_A 251 DVVLHKGRV-------------GEVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDW 317 (346)
T ss_dssp HHHHHHCCT-------------TCEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCC
T ss_pred HHHHhcCCC-------------CCEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCC
Confidence 999987642 2799999999999999999999999987763333223345556677999999999999
Q ss_pred cccCCHHHHHHHHHHHHHHHhc
Q 042406 391 MPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 391 ~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
+|+++++++|+++++||+++.+
T Consensus 318 ~p~~~~~e~l~~~~~~~~~~~~ 339 (346)
T 4egb_A 318 EPKYTFEQGLQETVQWYEKNEE 339 (346)
T ss_dssp CCCCCHHHHHHHHHHHHHHCHH
T ss_pred CCCCCHHHHHHHHHHHHHhhhh
Confidence 9999999999999999998654
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=368.54 Aligned_cols=320 Identities=25% Similarity=0.383 Sum_probs=264.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.+|+||||||+||||++|+++|+++|++|++++|+.+........... ....++.++.+|++|.+++.++++..++|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEK--ITGKTPAFHETDVSDERALARIFDAHPITA 81 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHH--HHSCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHh--hcCCCceEEEeecCCHHHHHHHHhccCCcE
Confidence 568999999999999999999999999999999987655443332221 224578999999999999999999666799
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKA 237 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~ 237 (424)
||||||.........++...+++|+.++.+++++|++.+.+ +||++||.++||.....+++|+.+. .|.+.|+.||++
T Consensus 82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~e~~~~-~~~~~Y~~sK~~ 159 (341)
T 3enk_A 82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-RIVFSSSATVYGVPERSPIDETFPL-SATNPYGQTKLM 159 (341)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGBCSCSSSSBCTTSCC-BCSSHHHHHHHH
T ss_pred EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEecceEecCCCCCCCCCCCCC-CCCChhHHHHHH
Confidence 99999997766667778899999999999999999998875 9999999999998777788888866 688999999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEEeccccCCCCC----------CCCcHHHHHHHHHcC-CceeEEec---CCCCcccccccc
Q 042406 238 GEAIAHAYNHIYG-LSITGLRFFTVYGPWGR----------PDMAYFFFTRDIIRG-KRITVYEA---PDGASVARDFTY 302 (424)
Q Consensus 238 ~e~~~~~~~~~~~-i~~~~vrp~~v~G~~~~----------~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~i~ 302 (424)
+|.+++.++.+++ ++++++||++||||+.. .+.+.+.+....... .++.++.. .+++++.++|+|
T Consensus 160 ~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~ 239 (341)
T 3enk_A 160 AEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIH 239 (341)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEE
T ss_pred HHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEE
Confidence 9999999998875 99999999999999542 133444444433332 44555520 016789999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChH
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANIS 382 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s 382 (424)
++|+|++++.+++..... ..+++||+++++++|+.|+++.+.+.+|.+.++...+. +..+.....+|++
T Consensus 240 v~Dva~a~~~~~~~~~~~----------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~ 308 (341)
T 3enk_A 240 VVDLARGHIAALDALERR----------DASLTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVAR-RPGDVAECYANPA 308 (341)
T ss_dssp HHHHHHHHHHHHHHHHHH----------TSCEEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECC-CTTCCSEECBCCH
T ss_pred HHHHHHHHHHHHHhhhcC----------CcceEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCC-CCCCccccccCHH
Confidence 999999999999874211 22389999999999999999999999999887766554 3556667789999
Q ss_pred HHHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 383 LAQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 383 ~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
|++++|||+|+++++++|+++++||+++.+
T Consensus 309 k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 309 AAAETIGWKAERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp HHHHHHCCCCCCCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999998754
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-47 Score=359.81 Aligned_cols=298 Identities=24% Similarity=0.309 Sum_probs=258.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+||||||+||||++|+++|+++|++|++++|+.... . ..+++++.+|++ .+++.++++++ |+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~-----------~~~~~~~~~Dl~-~~~~~~~~~~~--d~V 66 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNK-A-----------INDYEYRVSDYT-LEDLINQLNDV--DAV 66 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----------------CCEEEECCCC-HHHHHHHTTTC--SEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcc-c-----------CCceEEEEcccc-HHHHHHhhcCC--CEE
Confidence 47899999999999999999999999999999973211 0 127899999999 99999999955 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
||+|+..... +++..+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.+|+++
T Consensus 67 ih~a~~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~-r~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~~~ 140 (311)
T 3m2p_A 67 VHLAATRGSQ----GKISEFHDNEILTQNLYDACYENNIS-NIVYASTISAYSDETSLPWNEKELP-LPDLMYGVSKLAC 140 (311)
T ss_dssp EECCCCCCSS----SCGGGTHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCCGGGCSBCTTSCC-CCSSHHHHHHHHH
T ss_pred EEccccCCCC----ChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccHHHhCCCCCCCCCCCCCC-CCCchhHHHHHHH
Confidence 9999986543 66788999999999999999999875 9999999999998777888888866 7889999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
|.+++.++.+.|++++++||+.||||+.....++..++..+..+.++.++ ++++..++|+|++|+|++++.+++.+.
T Consensus 141 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~v~v~Dva~a~~~~~~~~~ 217 (311)
T 3m2p_A 141 EHIGNIYSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLH---ANSVAKREFLYAKDAAKSVIYALKQEK 217 (311)
T ss_dssp HHHHHHHHHHSCCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEES---SBCCCCEEEEEHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEe---cCCCeEEceEEHHHHHHHHHHHHhcCC
Confidence 99999999988999999999999999887667788899999999988876 678899999999999999999998764
Q ss_pred ccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCcccCCHHH
Q 042406 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLET 398 (424)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p~~~l~~ 398 (424)
. +++||+++++++|+.|+++.+.+.+|.+......+.+...+.....+|++|+++.|||+|++++++
T Consensus 218 ~-------------~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~ 284 (311)
T 3m2p_A 218 V-------------SGTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFAT 284 (311)
T ss_dssp C-------------CEEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHH
T ss_pred C-------------CCeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHH
Confidence 1 289999999999999999999999999887776665445666778899999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 042406 399 GLKKFVRWYLSYYNS 413 (424)
Q Consensus 399 ~l~~~v~~~~~~~~~ 413 (424)
+|+++++|+++..+.
T Consensus 285 ~l~~~~~~~~~~~~~ 299 (311)
T 3m2p_A 285 AVEEIHLLMRGLDDV 299 (311)
T ss_dssp HHHHHHHHHCC----
T ss_pred HHHHHHHHHHhcccC
Confidence 999999999876554
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-46 Score=361.39 Aligned_cols=316 Identities=29% Similarity=0.467 Sum_probs=261.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhh--hccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL--LERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
+++|+||||||+||||++|+++|+++|++|++++|+............... ....++.++.+|++|.+++.++++++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 103 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV- 103 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC-
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC-
Confidence 567899999999999999999999999999999997643222222111111 01357999999999999999999955
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
|+||||||.........+++..+++|+.++.+++++|++.+++ +||++||.++|+.....+++|+++. .|.+.|+.+
T Consensus 104 -d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~E~~~~-~~~~~Y~~s 180 (352)
T 1sb8_A 104 -DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKVEDTIG-KPLSPYAVT 180 (352)
T ss_dssp -SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhcCCCCCCCCCCCCCC-CCCChhHHH
Confidence 9999999986655556678889999999999999999998875 9999999999998776788888765 788999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----CcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHH
Q 042406 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD----MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 310 (424)
|+++|.+++.+++++|++++++||+.||||+.... .+++.++..+..+.++.++ ++++..++|+|++|+|+++
T Consensus 181 K~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~Dva~a~ 257 (352)
T 1sb8_A 181 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQAN 257 (352)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEe---CCCCceEeeEEHHHHHHHH
Confidence 99999999999888899999999999999986543 4566777888888887776 6778899999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHh---Ccccccc--cccCCCCCCcccccCChHHHH
Q 042406 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKIL---KVKAETK--VLPLPRNGDVQFTHANISLAQ 385 (424)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~---g~~~~~~--~~~~~~~~~~~~~~~d~s~~~ 385 (424)
+.++..... ..+++||+++++++|+.|+++.+.+.+ |.+.... ..+ .+..+.....+|++|++
T Consensus 258 ~~~~~~~~~-----------~~~~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~k~~ 325 (352)
T 1sb8_A 258 LLAATAGLD-----------ARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRD-FREGDVRHSLADISKAA 325 (352)
T ss_dssp HHHHTCCGG-----------GCSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEEC-CCTTCCSBCCBCCHHHH
T ss_pred HHHHhcccc-----------CCCceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecC-CCccchhhccCCHHHHH
Confidence 988876321 123899999999999999999999999 8766532 222 12344456678999999
Q ss_pred hHcCCcccCCHHHHHHHHHHHHHHHh
Q 042406 386 RELGYMPTTDLETGLKKFVRWYLSYY 411 (424)
Q Consensus 386 ~~LG~~p~~~l~~~l~~~v~~~~~~~ 411 (424)
++|||+|+++++|+|+++++||+++.
T Consensus 326 ~~lG~~p~~~~~e~l~~~~~~~~~~~ 351 (352)
T 1sb8_A 326 KLLGYAPKYDVSAGVALAMPWYIMFL 351 (352)
T ss_dssp HHTCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=356.68 Aligned_cols=302 Identities=25% Similarity=0.357 Sum_probs=254.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.+.|+||||||+||||++|+++|+++|++|++++|+... .. + ++.++.+|++|.+++.+++++.++|
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~---------l---~~~~~~~Dl~d~~~~~~~~~~~~~d 76 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL---------P---NVEMISLDIMDSQRVKKVISDIKPD 76 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC---------T---TEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc---------c---eeeEEECCCCCHHHHHHHHHhcCCC
Confidence 456889999999999999999999999999999996542 10 1 6889999999999999999875679
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCcccCCC--CCCCCCCCCCCCCCCChHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS-DPQPAIVWASSSSVYGVN--KKVPFSEKDRTDQPASLYAA 233 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~~v~~SS~~vyg~~--~~~~~~e~~~~~~~~~~Y~~ 233 (424)
+||||||.........+++..+++|+.|+.+++++|++. +. ++||++||.++||.. ...+++|+++. .|.+.|+.
T Consensus 77 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~-~~iv~~SS~~v~g~~~~~~~~~~E~~~~-~~~~~Y~~ 154 (321)
T 2pk3_A 77 YIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLD-CRILTIGSSEEYGMILPEESPVSEENQL-RPMSPYGV 154 (321)
T ss_dssp EEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCC-CEEEEEEEGGGTBSCCGGGCSBCTTSCC-BCCSHHHH
T ss_pred EEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCC-CeEEEEccHHhcCCCCCCCCCCCCCCCC-CCCCccHH
Confidence 999999987766566788899999999999999999776 44 499999999999976 56678888765 67899999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHc---C--CceeEEecCCCCccccccccHHHHHH
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIR---G--KRITVYEAPDGASVARDFTYIDDIVK 308 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~i~v~Dva~ 308 (424)
+|+++|.+++.+++++|++++++||++||||+......++.++..+.. + .++..+ ++++..++|+|++|+|+
T Consensus 155 sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~v~v~Dva~ 231 (321)
T 2pk3_A 155 SKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKV---GNLEAVRDFTDVRDIVQ 231 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEE---SCSSCEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEe---CCCCcEEeeEEHHHHHH
Confidence 999999999999888899999999999999987765566667777666 6 466665 56788999999999999
Q ss_pred HHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccC-CCCCCcccccCChHHHHhH
Q 042406 309 GCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL-PRNGDVQFTHANISLAQRE 387 (424)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~d~s~~~~~ 387 (424)
+++.+++.+. .+++||+++++++|+.|+++.+.+.+|.+..+...|. .+..+.....+|++|+++.
T Consensus 232 a~~~~~~~~~-------------~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~ 298 (321)
T 2pk3_A 232 AYWLLSQYGK-------------TGDVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDS 298 (321)
T ss_dssp HHHHHHHHCC-------------TTCEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHHHHH
T ss_pred HHHHHHhCCC-------------CCCeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHHHHH
Confidence 9999998752 1279999999999999999999999998766554442 1233445678999999999
Q ss_pred cCCcccCCHHHHHHHHHHHHHH
Q 042406 388 LGYMPTTDLETGLKKFVRWYLS 409 (424)
Q Consensus 388 LG~~p~~~l~~~l~~~v~~~~~ 409 (424)
|||+|+++++++|+++++||++
T Consensus 299 lG~~p~~~~~e~l~~~~~~~~~ 320 (321)
T 2pk3_A 299 TGWKPRIPLEKSLFEILQSYRQ 320 (321)
T ss_dssp HCCCCCSCHHHHHHHHHHHHHT
T ss_pred cCCCcCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999975
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=358.35 Aligned_cols=304 Identities=26% Similarity=0.418 Sum_probs=252.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||+||||++|+++|+++|++|++++|+.+..... ...+++++.+|+.|.+ +.++++. |+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~~Dl~d~~-~~~~~~~---d~vi 67 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREF---------VNPSAELHVRDLKDYS-WGAGIKG---DVVF 67 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGG---------SCTTSEEECCCTTSTT-TTTTCCC---SEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhh---------cCCCceEEECccccHH-HHhhcCC---CEEE
Confidence 6899999999999999999999999999999976532221 2467899999999998 8777774 9999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|+||.........+++..+++|+.|+.+++++|++.+++ +|||+||.++||.....+++|+.+. .|.+.|+.+|+++|
T Consensus 68 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~vyg~~~~~~~~e~~~~-~p~~~Y~~sK~~~e 145 (312)
T 3ko8_A 68 HFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TVVFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGE 145 (312)
T ss_dssp ECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHHH
T ss_pred ECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeCcHHHhCCCCCCCCCCCCCC-CCCChHHHHHHHHH
Confidence 999987666677888999999999999999999999875 9999999999998877788888765 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcC-CceeEEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRG-KRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
.+++.++.++|++++++||++||||+... ..+..++..+..+ ..+.++ +++++.++|+|++|+|++++.++++..
T Consensus 146 ~~~~~~~~~~g~~~~~lrp~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~~~~~~ 221 (312)
T 3ko8_A 146 VMCATYARLFGVRCLAVRYANVVGPRLRH-GVIYDFIMKLRRNPNVLEVL---GDGTQRKSYLYVRDAVEATLAAWKKFE 221 (312)
T ss_dssp HHHHHHHHHHCCEEEEEEECEEECTTCCS-SHHHHHHHHHHHCTTEEEEC-------CEECEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeeccccCcCCCC-ChHHHHHHHHHhCCCCeEEc---CCCCeEEeeEEHHHHHHHHHHHHHhcc
Confidence 99999999889999999999999997654 4455667777766 445454 678899999999999999999998732
Q ss_pred ccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCC-----CCCCcccccCChHHHHhHcCCccc
Q 042406 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP-----RNGDVQFTHANISLAQRELGYMPT 393 (424)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~-----~~~~~~~~~~d~s~~~~~LG~~p~ 393 (424)
... ..+++||+++++++|+.|+++.+.+.+|.+..+...+.. ...+.....+|++|+++.|||+|+
T Consensus 222 ~~~---------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 292 (312)
T 3ko8_A 222 EMD---------APFLALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPT 292 (312)
T ss_dssp HSC---------CSEEEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCCCCS
T ss_pred ccC---------CCCcEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCCCCC
Confidence 111 234899999999999999999999999988766654432 234455678999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh
Q 042406 394 TDLETGLKKFVRWYLSYY 411 (424)
Q Consensus 394 ~~l~~~l~~~v~~~~~~~ 411 (424)
++++++|+++++|++++.
T Consensus 293 ~~~~~~l~~~~~~~~~~~ 310 (312)
T 3ko8_A 293 MTSAEAVKKTAEDLAKEL 310 (312)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 999999999999998763
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-46 Score=357.35 Aligned_cols=309 Identities=26% Similarity=0.417 Sum_probs=253.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCch-hhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYY-ETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
++|+||||||+||||++|+++|+++| ++|++++|..... .... .......+++++.+|++|.+++.+++.++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 76 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL----KDLEDDPRYTFVKGDVADYELVKELVRKV- 76 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG----TTTTTCTTEEEEECCTTCHHHHHHHHHTC-
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH----hhhccCCceEEEEcCCCCHHHHHHHhhCC-
Confidence 46889999999999999999999997 8999999964211 1111 11112457899999999999999999755
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
|+||||||.........+++..+++|+.|+.+++++|.+.+..++||++||.++||.....+++|+++. .+.+.|+.|
T Consensus 77 -d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~s 154 (336)
T 2hun_A 77 -DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRL-MPSSPYSAT 154 (336)
T ss_dssp -SEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCC-CCCSHHHHH
T ss_pred -CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCC-CCCCccHHH
Confidence 999999998765555667889999999999999999998865459999999999997666678887765 678999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHh
Q 042406 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGL 314 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 314 (424)
|+++|.+++.++.+++++++++||+.||||+.....+++.++..+..+.++.++ +++++.++|+|++|+|++++.++
T Consensus 155 K~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~~~~~~~ 231 (336)
T 2hun_A 155 KAASDMLVLGWTRTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIY---GTGKNVRDWLYVEDHVRAIELVL 231 (336)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEE---TC---CEEEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEe---CCCCceeeeEEHHHHHHHHHHHH
Confidence 999999999999888999999999999999876556677788888888888776 57788899999999999999998
Q ss_pred hhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccc-cccccCCCCCCcccccCChHHHHhHcCCccc
Q 042406 315 DTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE-TKVLPLPRNGDVQFTHANISLAQRELGYMPT 393 (424)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p~ 393 (424)
+... .+++||+++++++|+.|+++.+.+.+|.+.+ +...+ .+........+|++|++++|||+|.
T Consensus 232 ~~~~-------------~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~k~~~~lG~~p~ 297 (336)
T 2hun_A 232 LKGE-------------SREIYNISAGEEKTNLEVVKIILRLMGKGEELIELVE-DRPGHDLRYSLDSWKITRDLKWRPK 297 (336)
T ss_dssp HHCC-------------TTCEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEEC-CCTTCCCCCCBCCHHHHHHHCCCCS
T ss_pred hCCC-------------CCCEEEeCCCCcccHHHHHHHHHHHhCCCcccccccC-CCCCchhhhcCCHHHHHHHhCCCCC
Confidence 7642 2279999999999999999999999998653 22222 2233334567899999999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 042406 394 TDLETGLKKFVRWYLSY 410 (424)
Q Consensus 394 ~~l~~~l~~~v~~~~~~ 410 (424)
++++++|+++++||+++
T Consensus 298 ~~~~~~l~~~~~~~~~~ 314 (336)
T 2hun_A 298 YTFDEGIKKTIDWYLKN 314 (336)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999999875
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-47 Score=370.36 Aligned_cols=314 Identities=23% Similarity=0.349 Sum_probs=260.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCC-CHHHHHHHhh
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN-DKSLLDKIFN 151 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~v~~~~~ 151 (424)
+..+.+|+||||||+||||++|+++|+++ |++|++++|+.+..... ....+++++.+|++ |.+.+.++++
T Consensus 19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~--------~~~~~v~~~~~Dl~~d~~~~~~~~~ 90 (372)
T 3slg_A 19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL--------VKHERMHFFEGDITINKEWVEYHVK 90 (372)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG--------GGSTTEEEEECCTTTCHHHHHHHHH
T ss_pred CcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhh--------ccCCCeEEEeCccCCCHHHHHHHhc
Confidence 34467899999999999999999999998 99999999976532221 12368999999999 9999999999
Q ss_pred ccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC------
Q 042406 152 VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD------ 225 (424)
Q Consensus 152 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~------ 225 (424)
++ |+|||+||.........++...+++|+.++.+++++|++.+ + +|||+||.++||.....++.|++.+.
T Consensus 91 ~~--d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~-~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~ 166 (372)
T 3slg_A 91 KC--DVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPSTSEVYGMCADEQFDPDASALTYGPIN 166 (372)
T ss_dssp HC--SEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-C-EEEEECCGGGGBSCCCSSBCTTTCCEEECCTT
T ss_pred cC--CEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-C-cEEEeCcHHHhCCCCCCCCCccccccccCCCC
Confidence 76 99999999987766677888999999999999999999998 4 99999999999987777888877432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--------CCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP--------DMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.|.+.|+.+|+++|.+++.++++ |++++++||++||||+... ..++..++..+..+.++.++ ++++..
T Consensus 167 ~p~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~ 242 (372)
T 3slg_A 167 KPRWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLV---DGGSQK 242 (372)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEG---GGGCCE
T ss_pred CCCCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEe---CCCceE
Confidence 46678999999999999999888 9999999999999998642 34677888889999988876 567899
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCC-CCcccHHHHHHHHHHHhCcccccccccCCC------
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGN-TTPVPVSRLVSLLEKILKVKAETKVLPLPR------ 370 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~el~~~i~~~~g~~~~~~~~~~~~------ 370 (424)
++|+|++|+|++++.+++.+... ..+++||+++ ++++|+.|+++.+.+.+|.+..+...+...
T Consensus 243 ~~~i~v~Dva~a~~~~~~~~~~~----------~~~~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~ 312 (372)
T 3slg_A 243 RAFTYVDDGISALMKIIENSNGV----------ATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETT 312 (372)
T ss_dssp EECEEHHHHHHHHHHHHHCGGGT----------TTTEEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC-
T ss_pred EEEEEHHHHHHHHHHHHhcccCc----------CCCceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeecc
Confidence 99999999999999999876421 1238999999 489999999999999999876544332110
Q ss_pred --------CCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 371 --------NGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 371 --------~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
..+.....+|++|+++.|||+|+++++++|+++++||+++...
T Consensus 313 ~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 363 (372)
T 3slg_A 313 SGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVAD 363 (372)
T ss_dssp ------------CCCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTCHHH
T ss_pred ccccccCCccccceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1244556789999999999999999999999999999876543
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-46 Score=356.27 Aligned_cols=303 Identities=26% Similarity=0.412 Sum_probs=246.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
||+||||||+||||++|+++|+++| .|+++++....... ....++.++.+|++| +++.++++++ |+|
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~---------~~~~~~~~~~~Dl~~-~~~~~~~~~~--d~v 67 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEE---------FVNEAARLVKADLAA-DDIKDYLKGA--EEV 67 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGG---------GSCTTEEEECCCTTT-SCCHHHHTTC--SEE
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChh---------hcCCCcEEEECcCCh-HHHHHHhcCC--CEE
Confidence 4689999999999999999999999 55555553322111 113578999999999 9999999855 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
||+|+.........+++..+++|+.|+.+++++|++.+.+ +||++||.++||.....+++|+.+. .|.+.|+.+|.++
T Consensus 68 ih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~sK~~~ 145 (313)
T 3ehe_A 68 WHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTSTVYGEAKVIPTPEDYPT-HPISLYGASKLAC 145 (313)
T ss_dssp EECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHH
T ss_pred EECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCchHHhCcCCCCCCCCCCCC-CCCCHHHHHHHHH
Confidence 9999976666667788999999999999999999998875 9999999999998777788888765 7889999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcC-CceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRG-KRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
|.+++.++.++|++++++||++||||+... ..+..++..+..+ .++.++ +++++.++|+|++|+|++++.+++..
T Consensus 146 e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~~~~~ 221 (313)
T 3ehe_A 146 EALIESYCHTFDMQAWIYRFANVIGRRSTH-GVIYDFIMKLKRNPEELEIL---GNGEQNKSYIYISDCVDAMLFGLRGD 221 (313)
T ss_dssp HHHHHHHHHHTTCEEEEEECSCEESTTCCC-SHHHHHHHHHHHCTTEEEES---TTSCCEECCEEHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCEEEEeeccccCcCCCc-ChHHHHHHHHHcCCCceEEe---CCCCeEEeEEEHHHHHHHHHHHhccC
Confidence 999999999999999999999999997664 4556667777666 455554 67889999999999999999999832
Q ss_pred cccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCC--CCCCcccccCChHHHHhHcCCcccCC
Q 042406 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP--RNGDVQFTHANISLAQRELGYMPTTD 395 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~--~~~~~~~~~~d~s~~~~~LG~~p~~~ 395 (424)
..+++||+++++++|+.|+++.+.+.+|.+..+...+.+ ...+.....+|++|++ +|||+|+++
T Consensus 222 -------------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lG~~p~~~ 287 (313)
T 3ehe_A 222 -------------ERVNIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLK-RLGWKPRYN 287 (313)
T ss_dssp -------------SSEEEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHHH-HHTCCCSCC
T ss_pred -------------CCCceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHHH-HcCCCCCCC
Confidence 223899999999999999999999999988766554422 2344456779999995 599999999
Q ss_pred HHHHHHHHHHHHHHHhccC
Q 042406 396 LETGLKKFVRWYLSYYNSA 414 (424)
Q Consensus 396 l~~~l~~~v~~~~~~~~~~ 414 (424)
++++|+++++|++++.+..
T Consensus 288 ~~e~l~~~~~~~~~~~~~~ 306 (313)
T 3ehe_A 288 SEEAVRMAVRDLVEDLDEE 306 (313)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhCcccc
Confidence 9999999999999988753
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-45 Score=352.62 Aligned_cols=313 Identities=25% Similarity=0.395 Sum_probs=254.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
||+||||||+||||++|+++|+++|++|++++|....... .+ ..+++++.+|++|.+++.++++..++|+|
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------~~-~~~~~~~~~D~~~~~~~~~~~~~~~~d~v 71 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHED--------AI-TEGAKFYNGDLRDKAFLRDVFTQENIEAV 71 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG--------GS-CTTSEEEECCTTCHHHHHHHHHHSCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchh--------hc-CCCcEEEECCCCCHHHHHHHHhhcCCCEE
Confidence 4789999999999999999999999999999996543211 11 13789999999999999999985456999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
||+||.........+++..+++|+.++.+++++|++.+++ +||++||.++|+.....+++|+++. .|.+.|+.+|+++
T Consensus 72 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~~~~~~~~~E~~~~-~~~~~Y~~sK~~~ 149 (330)
T 2c20_A 72 MHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSSTAATYGEVDVDLITEETMT-NPTNTYGETKLAI 149 (330)
T ss_dssp EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGGCSCSSSSBCTTSCC-CCSSHHHHHHHHH
T ss_pred EECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeCCceeeCCCCCCCCCcCCCC-CCCChHHHHHHHH
Confidence 9999987655455678889999999999999999998875 9999999999997766788888766 7789999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCC---------CCCcHHHHHHHHHc-CCceeEEec---CCCCccccccccHHH
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYGPWGR---------PDMAYFFFTRDIIR-GKRITVYEA---PDGASVARDFTYIDD 305 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G~~~~---------~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~i~v~D 305 (424)
|.+++.++++++++++++||++||||+.. ...+++.++..+.. +..+.++.. ..+++..++|+|++|
T Consensus 150 e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~D 229 (330)
T 2c20_A 150 EKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVED 229 (330)
T ss_dssp HHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHH
T ss_pred HHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHH
Confidence 99999999888999999999999999631 23345555544443 334556521 015678999999999
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHH
Q 042406 306 IVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQ 385 (424)
Q Consensus 306 va~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~ 385 (424)
+|++++.+++.+... ..+++||+++++++|+.|+++.+.+.+|.+.+....+. ...+.....+|++|++
T Consensus 230 va~a~~~~~~~~~~~----------~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~ 298 (330)
T 2c20_A 230 LVAAHFLGLKDLQNG----------GESDFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPR-RAGDPARLVASSQKAK 298 (330)
T ss_dssp HHHHHHHHHHHHHTT----------CCCEEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECC-CSSCCSEECBCCHHHH
T ss_pred HHHHHHHHHhccccC----------CCCCeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCC-CCCcccccccCHHHHH
Confidence 999999999875421 11379999999999999999999999998876655443 2334456789999999
Q ss_pred hHcCCcccC-CHHHHHHHHHHHHHHHhcc
Q 042406 386 RELGYMPTT-DLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 386 ~~LG~~p~~-~l~~~l~~~v~~~~~~~~~ 413 (424)
++|||+|++ +++++|+++++|++++.+.
T Consensus 299 ~~lG~~p~~~~l~~~l~~~~~~~~~~~~~ 327 (330)
T 2c20_A 299 EKLGWDPRYVNVKTIIEHAWNWHQKQPNG 327 (330)
T ss_dssp HHHCCCCSCCCHHHHHHHHHHHHHHCSSC
T ss_pred HHhCCCCccCCHHHHHHHHHHHHHHhhhc
Confidence 999999998 9999999999999887643
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-46 Score=355.59 Aligned_cols=300 Identities=20% Similarity=0.244 Sum_probs=253.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+++|+||||||+||||++|+++|+++|+ +.. .....++++.+|++|.+++.+++++.++|
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~--------------~~~~~~~~~~~D~~d~~~~~~~~~~~~~d 63 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LPG--------------EDWVFVSSKDADLTDTAQTRALFEKVQPT 63 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC------CTT--------------CEEEECCTTTCCTTSHHHHHHHHHHSCCS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC------ccc--------------ccccccCceecccCCHHHHHHHHhhcCCC
Confidence 5789999999999999999999999998 110 01123455678999999999999986779
Q ss_pred EEEEcccccCc-hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC----CCCCCCC-h
Q 042406 157 HVMHLAAQAGV-RYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKD----RTDQPAS-L 230 (424)
Q Consensus 157 ~vi~~Ag~~~~-~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~----~~~~~~~-~ 230 (424)
+|||+|+.... .....++...+++|+.|+.+++++|++.+++ +|||+||.++||.....+++|++ ++ .|.+ .
T Consensus 64 ~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~~~~~-~p~~~~ 141 (319)
T 4b8w_A 64 HVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCLSTCIFPDKTTYPIDETMIHNGPP-HNSNFG 141 (319)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGSCSSCCSSBCGGGGGBSCC-CSSSHH
T ss_pred EEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEcchhhcCCCCCCCccccccccCCC-CCCcch
Confidence 99999998652 3456778899999999999999999999876 99999999999988888888886 33 4445 5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CCcHHHHHHH----HHcCCceeEEecCCCCcccccccc
Q 042406 231 YAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP----DMAYFFFTRD----IIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
|+.+|+++|.+++.++++.+++++++||++||||+... ..+++.++.. +..+.++.++ ++++..++|+|
T Consensus 142 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~ 218 (319)
T 4b8w_A 142 YSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVW---GTGNPRRQFIY 218 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEE---SCSCCEECEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEe---CCCCeeEEEEe
Confidence 99999999999999998889999999999999998753 2455666666 7888888887 67889999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChH
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANIS 382 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s 382 (424)
++|+|++++.+++.+... .+++||+++++++|+.|+++.+.+.+|.+.++...+.. ..+.....+|++
T Consensus 219 v~Dva~a~~~~~~~~~~~-----------~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~d~~ 286 (319)
T 4b8w_A 219 SLDLAQLFIWVLREYNEV-----------EPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTK-SDGQFKKTASNS 286 (319)
T ss_dssp HHHHHHHHHHHHHHCCCS-----------SCEEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTS-CCCCSCCCBCCH
T ss_pred HHHHHHHHHHHHhccccC-----------CceEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCC-CcCcccccCCHH
Confidence 999999999999875432 23799999999999999999999999988777665543 444556679999
Q ss_pred HHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 383 LAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 383 ~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
|+++.|||.|.++++++|+++++||+++.+.
T Consensus 287 k~~~~lg~~p~~~~~~~l~~~~~~~~~~~~~ 317 (319)
T 4b8w_A 287 KLRTYLPDFRFTPFKQAVKETCAWFTDNYEQ 317 (319)
T ss_dssp HHHHHCTTCCCCCHHHHHHHHHHHHHHSCSS
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987664
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=362.23 Aligned_cols=304 Identities=23% Similarity=0.261 Sum_probs=252.5
Q ss_pred CCCCCCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH
Q 042406 70 KSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI 149 (424)
Q Consensus 70 ~~~~~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~ 149 (424)
+.......++|+||||||+||||++|+++|+++|++|++++|+.+. .++.++.+|++|.+++.++
T Consensus 10 ~~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~---------------~~~~~~~~Dl~d~~~~~~~ 74 (347)
T 4id9_A 10 HSSGLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG---------------TGGEEVVGSLEDGQALSDA 74 (347)
T ss_dssp -----------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS---------------SCCSEEESCTTCHHHHHHH
T ss_pred CCCcccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC---------------CCccEEecCcCCHHHHHHH
Confidence 3334556788999999999999999999999999999999996542 5788999999999999999
Q ss_pred hhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC--CCCCCCCCCCCCCCC
Q 042406 150 FNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV--NKKVPFSEKDRTDQP 227 (424)
Q Consensus 150 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~--~~~~~~~e~~~~~~~ 227 (424)
++++ |+|||+|+..... ..+.+..+++|+.|+.+++++|++.+++ +|||+||.++||. ....++.|+++. .|
T Consensus 75 ~~~~--d~vih~A~~~~~~--~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~V~~SS~~vyg~~~~~~~~~~E~~~~-~~ 148 (347)
T 4id9_A 75 IMGV--SAVLHLGAFMSWA--PADRDRMFAVNVEGTRRLLDAASAAGVR-RFVFASSGEVYPENRPEFLPVTEDHPL-CP 148 (347)
T ss_dssp HTTC--SEEEECCCCCCSS--GGGHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGTTTTSCSSSSBCTTSCC-CC
T ss_pred HhCC--CEEEECCcccCcc--hhhHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHHhCCCCCCCCCcCCCCCC-CC
Confidence 9965 9999999986543 2233789999999999999999998875 9999999999997 456678888766 78
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEecccc-------------CCCCCC-----------CCcHHHHHHHHHcCC
Q 042406 228 ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVY-------------GPWGRP-----------DMAYFFFTRDIIRGK 283 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~-------------G~~~~~-----------~~~~~~~~~~~~~~~ 283 (424)
.+.|+.+|+++|.+++.++++.+++++++||+.|| ||+... ..++..++..+..+.
T Consensus 149 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (347)
T 4id9_A 149 NSPYGLTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGE 228 (347)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSS
T ss_pred CChHHHHHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCC
Confidence 89999999999999999999889999999999999 876332 345666777888888
Q ss_pred ceeEEecCCCCcccccc----ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCc
Q 042406 284 RITVYEAPDGASVARDF----TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKV 359 (424)
Q Consensus 284 ~~~~~~~~~~~~~~~~~----i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~ 359 (424)
++.++ ++++..++| +|++|+|++++.+++.+.. .+++||+++++++|+.|+++.+.+.+|.
T Consensus 229 ~~~~~---g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~------------~~~~~ni~~~~~~s~~e~~~~i~~~~g~ 293 (347)
T 4id9_A 229 PSHIL---ARNENGRPFRMHITDTRDMVAGILLALDHPEA------------AGGTFNLGADEPADFAALLPKIAALTGL 293 (347)
T ss_dssp CCEEE---EECTTCCBCEECEEEHHHHHHHHHHHHHCGGG------------TTEEEEESCSSCEEHHHHHHHHHHHHCC
T ss_pred CeEEe---CCCCcccCCccCcEeHHHHHHHHHHHhcCccc------------CCCeEEECCCCcccHHHHHHHHHHHhCC
Confidence 87777 467788899 9999999999999988742 2389999999999999999999999998
Q ss_pred ccccccccCCCCCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 360 KAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
+......|... ....+|++|++++|||.|+++++++|+++++|++++..+
T Consensus 294 ~~~~~~~p~~~----~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 343 (347)
T 4id9_A 294 PIVTVDFPGDG----VYYHTSNERIRNTLGFEAEWTMDRMLEEAATARRQRLAK 343 (347)
T ss_dssp CEEEEECSSCC----CBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC-
T ss_pred CCceeeCCCcc----cccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhhc
Confidence 87765443321 256799999999999999999999999999999988765
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=357.80 Aligned_cols=320 Identities=22% Similarity=0.270 Sum_probs=257.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+++|+||||||+||||++|+++|+++|++|++++|+.+.......... ...++.++.+|++|.+++.+++++.++|
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 82 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR----VADGMQSEIGDIRDQNKLLESIREFQPE 82 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT----TTTTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhc----cCCceEEEEccccCHHHHHHHHHhcCCC
Confidence 467899999999999999999999999999999997654332221111 1357899999999999999999986679
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC-CCCCCCCCCCCCCChHHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKK-VPFSEKDRTDQPASLYAATK 235 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~-~~~~e~~~~~~~~~~Y~~sK 235 (424)
+||||||.........+++..+++|+.|+.+++++|++.+..++||++||.++||.... .++.|+++. .+.+.|+.+|
T Consensus 83 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~-~~~~~Y~~sK 161 (357)
T 1rkx_A 83 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAM-GGYDPYSNSK 161 (357)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCB-CCSSHHHHHH
T ss_pred EEEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCC-CCCCccHHHH
Confidence 99999997555555677889999999999999999998762349999999999997543 366676654 6789999999
Q ss_pred HHHHHHHHHHHHHh---------CCcEEEEEeccccCCCCCC-CCcHHHHHHHHHcCCceeEEecCCCCccccccccHHH
Q 042406 236 KAGEAIAHAYNHIY---------GLSITGLRFFTVYGPWGRP-DMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDD 305 (424)
Q Consensus 236 ~~~e~~~~~~~~~~---------~i~~~~vrp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 305 (424)
+++|.+++.++.++ |++++++||+.||||+... ..++..++..+..+.++.+ ++++..++|+|++|
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~v~v~D 237 (357)
T 1rkx_A 162 GCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVII----RNPHAIRPWQHVLE 237 (357)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEEC----SCTTCEECCEETHH
T ss_pred HHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEE----CCCCCeeccEeHHH
Confidence 99999999998765 9999999999999997642 3567778888888887765 35678899999999
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC--CcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHH
Q 042406 306 IVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT--TPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISL 383 (424)
Q Consensus 306 va~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~ 383 (424)
+|++++.+++....... ..+++||++++ +++|+.|+++.+.+.+|.+..+...+.++..+.....+|++|
T Consensus 238 va~a~~~~~~~~~~~~~--------~~~~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k 309 (357)
T 1rkx_A 238 PLSGYLLLAQKLYTDGA--------EYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSK 309 (357)
T ss_dssp HHHHHHHHHHHHHHTCG--------GGCSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHH
T ss_pred HHHHHHHHHHhhhhcCC--------CCCceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccCCHHH
Confidence 99999998875311000 12379999984 689999999999999998776554433334445567899999
Q ss_pred HHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 384 AQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 384 ~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
++++|||+|+++++++|+++++||+++...
T Consensus 310 ~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 339 (357)
T 1rkx_A 310 AKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 339 (357)
T ss_dssp HHHHHCCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCcCCcHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999987654
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=353.22 Aligned_cols=316 Identities=22% Similarity=0.224 Sum_probs=256.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
..+|+||||||+||||++|+++|+++|++|++++|+.+......... .....++.++.+|++|.+++.++++++++|
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 88 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRE---LGIEGDIQYEDGDMADACSVQRAVIKAQPQ 88 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHH---TTCGGGEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhh---ccccCceEEEECCCCCHHHHHHHHHHcCCC
Confidence 46789999999999999999999999999999999765422111111 112357899999999999999999987789
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKK 236 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~ 236 (424)
+||||||.........+++..+++|+.|+.+++++|++.++.++||++||.++||.....+++|+++. .|.+.|+.+|+
T Consensus 89 ~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~~sK~ 167 (335)
T 1rpn_A 89 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPF-YPRSPYGVAKL 167 (335)
T ss_dssp EEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHH
T ss_pred EEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcccCC-CCCChhHHHHH
Confidence 99999998766555677889999999999999999999886349999999999998776788888766 77899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCc---HHHHHHHHHcCCce-eEEecCCCCccccccccHHHHHHHHHH
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMA---YFFFTRDIIRGKRI-TVYEAPDGASVARDFTYIDDIVKGCLA 312 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~Dva~a~~~ 312 (424)
++|.+++.++++++++++++||+.+|||+...+.. +..++..+..+... ..+ +++++.++|+|++|+|++++.
T Consensus 168 ~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~g~~~~~~i~v~Dva~a~~~ 244 (335)
T 1rpn_A 168 YGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRL---GNVDAKRDWGFAGDYVEAMWL 244 (335)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE---SCTTCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEe---CCCcceeceEEHHHHHHHHHH
Confidence 99999999998889999999999999997654332 34455666677643 333 677899999999999999999
Q ss_pred HhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccc--ccccC-CCCCCcccccCChHHHHhHcC
Q 042406 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAET--KVLPL-PRNGDVQFTHANISLAQRELG 389 (424)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~--~~~~~-~~~~~~~~~~~d~s~~~~~LG 389 (424)
+++.+.. ++||+++++++|+.|+++.+.+.+|.+... ...+. .++.+.....+|++|++++||
T Consensus 245 ~~~~~~~--------------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 310 (335)
T 1rpn_A 245 MLQQDKA--------------DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLG 310 (335)
T ss_dssp HHHSSSC--------------CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHC
T ss_pred HHhcCCC--------------CEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcC
Confidence 9986531 689999999999999999999999986431 11111 123344556789999999999
Q ss_pred CcccCCHHHHHHHHHHHHHHHhcc
Q 042406 390 YMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 390 ~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
|+|+++++++|+++++|++++..+
T Consensus 311 ~~p~~~l~e~l~~~~~~~~~~~~~ 334 (335)
T 1rpn_A 311 WKPRTSLDELIRMMVEADLRRVSR 334 (335)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999987643
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=352.49 Aligned_cols=307 Identities=26% Similarity=0.440 Sum_probs=255.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC---C---CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKR---G---DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~---g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
|+||||||+||||++|+++|+++ | ++|++++|......... . .......+++++.+|++|.+++.+++.++
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~--~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRAN--L-APVDADPRLRFVHGDIRDAGLLARELRGV 77 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGG--G-GGGTTCTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhh--h-hhcccCCCeEEEEcCCCCHHHHHHHhcCC
Confidence 68999999999999999999997 8 99999999643111100 0 01112357899999999999999999755
Q ss_pred CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 042406 154 AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAA 233 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~ 233 (424)
|+||||||.........+++..+++|+.|+.+++++|++.+++ +||++||.++||.....+++|+++. .|.+.|+.
T Consensus 78 --d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~ 153 (337)
T 1r6d_A 78 --DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAA 153 (337)
T ss_dssp --CEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBCTTSCC-CCCSHHHH
T ss_pred --CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecchHHhCCCCCCCCCCCCCC-CCCCchHH
Confidence 9999999987655555678899999999999999999998875 9999999999997656678887755 67899999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHH
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAG 313 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 313 (424)
||+++|.+++.++++++++++++||+.||||+.....++..++..+..+.++.++ +++++.++|+|++|+|++++.+
T Consensus 154 sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~~ 230 (337)
T 1r6d_A 154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLY---GDGANVREWVHTDDHCRGIALV 230 (337)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEE---TTSCCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEe---CCCCeeEeeEeHHHHHHHHHHH
Confidence 9999999999999888999999999999999876556677788888888888776 5778899999999999999999
Q ss_pred hhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccc-cccccCCCCCCcccccCChHHHHhHcCCcc
Q 042406 314 LDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE-TKVLPLPRNGDVQFTHANISLAQRELGYMP 392 (424)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p 392 (424)
++... .+++||+++++++|+.|+++.+.+.+|.+.+ +...+ .+......+.+|++|++++|||+|
T Consensus 231 ~~~~~-------------~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~k~~~~lG~~p 296 (337)
T 1r6d_A 231 LAGGR-------------AGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVA-DRKGHDLRYSLDGGKIERELGYRP 296 (337)
T ss_dssp HHHCC-------------TTCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEEC-CCTTCCCBCCBCCHHHHHHHCCCC
T ss_pred HhCCC-------------CCCEEEeCCCCCccHHHHHHHHHHHhCCCcccceecC-CCCCCcceeecCHHHHHHHcCCCC
Confidence 87642 1279999999999999999999999998753 22222 223333455789999999999999
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 042406 393 TTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 393 ~~~l~~~l~~~v~~~~~~ 410 (424)
.++++++|+++++||+++
T Consensus 297 ~~~~~e~l~~~~~~~~~~ 314 (337)
T 1r6d_A 297 QVSFADGLARTVRWYREN 314 (337)
T ss_dssp CSCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999999875
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=350.98 Aligned_cols=302 Identities=29% Similarity=0.458 Sum_probs=252.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||+||||++++++|+++|++|++++|....... .. ..++.++.+|++|.+++.+++++.++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--------~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 71 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE--------NV-PKGVPFFRVDLRDKEGVERAFREFRPTHVS 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG--------GS-CTTCCEECCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh--------hc-ccCeEEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 689999999999999999999999999999985432111 01 146788999999999999999865669999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC-cccCC-CCCCCCCCCCCCCCCCChHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSS-SVYGV-NKKVPFSEKDRTDQPASLYAATKKA 237 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~-~vyg~-~~~~~~~e~~~~~~~~~~Y~~sK~~ 237 (424)
|+|+.........+++..+++|+.|+.+++++|++.+++ +||++||. ++||. ....+++|+++. .|.+.|+.||++
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~~g~~~~~~~~~E~~~~-~~~~~Y~~sK~~ 149 (311)
T 2p5y_A 72 HQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE-KLVFASTGGAIYGEVPEGERAEETWPP-RPKSPYAASKAA 149 (311)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEHHHHHCCCCTTCCBCTTSCC-CCCSHHHHHHHH
T ss_pred ECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCChhhcCCCCCCCCcCCCCCC-CCCChHHHHHHH
Confidence 999987655556778889999999999999999998865 99999998 99986 445577777755 678899999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCC---CcHHHHHHHHHcCCceeEEe--cCCCCccccccccHHHHHHHHHH
Q 042406 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD---MAYFFFTRDIIRGKRITVYE--APDGASVARDFTYIDDIVKGCLA 312 (424)
Q Consensus 238 ~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~v~Dva~a~~~ 312 (424)
+|.+++.+++++|++++++||++||||+.... .+++.++..+..+.++.++. .++++++.++|+|++|+|++++.
T Consensus 150 ~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~ 229 (311)
T 2p5y_A 150 FEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHAL 229 (311)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHH
Confidence 99999999888899999999999999976542 24566777788888776651 11356788999999999999999
Q ss_pred HhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCcc
Q 042406 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMP 392 (424)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p 392 (424)
+++.+ + ++||+++++++|+.|+++.+.+.+|.+.+....+. +..+.....+|++|+++ |||+|
T Consensus 230 ~~~~~----~-----------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~-lg~~p 292 (311)
T 2p5y_A 230 ALFSL----E-----------GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPP-RPGDLERSVLSPLKLMA-HGWRP 292 (311)
T ss_dssp HHHHC----C-----------EEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECC-CTTCCSBCCBCCHHHHT-TTCCC
T ss_pred HHhCC----C-----------CEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCC-CccchhhccCCHHHHHH-CCCCC
Confidence 98764 1 79999999999999999999999998876655543 24455667899999999 99999
Q ss_pred cCCHHHHHHHHHHHHHH
Q 042406 393 TTDLETGLKKFVRWYLS 409 (424)
Q Consensus 393 ~~~l~~~l~~~v~~~~~ 409 (424)
.++++++|+++++|+++
T Consensus 293 ~~~~~~~l~~~~~~~~~ 309 (311)
T 2p5y_A 293 KVGFQEGIRLTVDHFRG 309 (311)
T ss_dssp SSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999975
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=353.85 Aligned_cols=314 Identities=23% Similarity=0.357 Sum_probs=252.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhh-hHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET-SLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+|+||||||+||||++|+++|+++|++|++++|+...... ...... ...+++++.+|++|.+++.+++++.++|+
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~----~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLS----SLGNFEFVHGDIRNKNDVTRLITKYMPDS 76 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHH----TTCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhc----cCCceEEEEcCCCCHHHHHHHHhccCCCE
Confidence 4789999999999999999999999999999986422111 111111 12468999999999999999999845699
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCC----------------CCCC
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVP----------------FSEK 221 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~----------------~~e~ 221 (424)
||||||.........+++..+++|+.|+.+++++|++.+.+++||++||.++||.....+ ++|+
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~ 156 (347)
T 1orr_A 77 CFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDES 156 (347)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTT
T ss_pred EEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCcccc
Confidence 999999876555566788999999999999999999988645899999999998654433 4444
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC---CCcHHHHHHHHHcCC-----ceeEEecCCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP---DMAYFFFTRDIIRGK-----RITVYEAPDG 293 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~ 293 (424)
.+. .+.+.|+.+|+++|.+++.++.++|+++++|||+.||||+... ...+..++..++.+. ++.++ ++
T Consensus 157 ~~~-~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~ 232 (347)
T 1orr_A 157 TQL-DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTIS---GN 232 (347)
T ss_dssp SCC-CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEE---SS
T ss_pred CCC-CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEe---cC
Confidence 443 5778999999999999999998889999999999999997543 234556666666665 56665 67
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC--cccHHHHHHHHHHHhCcccccccccCCCC
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT--PVPVSRLVSLLEKILKVKAETKVLPLPRN 371 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~s~~el~~~i~~~~g~~~~~~~~~~~~~ 371 (424)
+++.++|+|++|+|++++.+++.... ..+++||++++. ++|+.|+++.+.+.+|.+..+...+ .+.
T Consensus 233 g~~~~~~i~v~Dva~a~~~~~~~~~~-----------~~g~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~~~ 300 (347)
T 1orr_A 233 GKQVRDVLHAEDMISLYFTALANVSK-----------IRGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLP-VRE 300 (347)
T ss_dssp SCCEEECEEHHHHHHHHHHHHHTHHH-----------HTTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEEC-CCS
T ss_pred CcceEeeEEHHHHHHHHHHHHhcccc-----------CCCCEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCC-CCC
Confidence 88999999999999999999875222 123799999986 4999999999999999887666555 234
Q ss_pred CCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 372 GDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 372 ~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
.+.....+|++|+++.|||+|+++++++|+++++|++++.+
T Consensus 301 ~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 341 (347)
T 1orr_A 301 SDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSILE 341 (347)
T ss_dssp SCCSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHC--
T ss_pred CCcceeecCHHHHHHHHCCCccCCHHHHHHHHHHHHHHHHH
Confidence 45556789999999999999998999999999999988654
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=351.05 Aligned_cols=318 Identities=31% Similarity=0.452 Sum_probs=256.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc------hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY------YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~------~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
+|+||||||+||||++|+++|+++|++|++++|+... .......... ....+++++.+|++|.+++.++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQE--LTGRSVEFEEMDILDQGALQRLFKK 79 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHH--HHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHh--ccCCceEEEECCCCCHHHHHHHHHh
Confidence 4789999999999999999999999999999986543 1121111111 1235789999999999999999985
Q ss_pred cCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC-CChH
Q 042406 153 VAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP-ASLY 231 (424)
Q Consensus 153 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~-~~~Y 231 (424)
.++|+||||||.........+++..+++|+.|+.+++++|++.+++ +||++||.++||.....+++|+++. .| .+.|
T Consensus 80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~E~~~~-~p~~~~Y 157 (348)
T 1ek6_A 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQYLPLDEAHPT-GGCTNPY 157 (348)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGGCSCSSSSBCTTSCC-CCCSSHH
T ss_pred cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEECcHHHhCCCCCCCcCCCCCC-CCCCCch
Confidence 5669999999987655455677889999999999999999998875 9999999999998777788888765 45 7899
Q ss_pred HHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCC------C----CCCcHHHHHHHHH-cCCceeEEec---CCCCc
Q 042406 232 AATKKAGEAIAHAYNHIYG--LSITGLRFFTVYGPWG------R----PDMAYFFFTRDII-RGKRITVYEA---PDGAS 295 (424)
Q Consensus 232 ~~sK~~~e~~~~~~~~~~~--i~~~~vrp~~v~G~~~------~----~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~ 295 (424)
+.+|+++|.+++.++.+ + ++++++||+++|||+. . ...+++.+...+. .+.++.++.. ..+++
T Consensus 158 ~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 236 (348)
T 1ek6_A 158 GKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236 (348)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSS
T ss_pred HHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCc
Confidence 99999999999999877 5 9999999999999952 1 1345566666666 5666776621 01567
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQ 375 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~ 375 (424)
+.++|+|++|+|++++.+++.+... ..+++||+++++++|+.|+++.+.+.+|.+.+....+. ...+..
T Consensus 237 ~~~~~i~v~Dva~a~~~~~~~~~~~----------~g~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~ 305 (348)
T 1ek6_A 237 GVRDYIHVVDLAKGHIAALRKLKEQ----------CGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR-REGDVA 305 (348)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHTTT----------CCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECC-CTTCCS
T ss_pred eEEeeEEHHHHHHHHHHHHhccccc----------CCceEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCC-CCccch
Confidence 8899999999999999999875311 11279999999999999999999999998776655443 234455
Q ss_pred cccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 376 FTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 376 ~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
...+|++|++++|||+|+++++++|+++++|++++..
T Consensus 306 ~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~~ 342 (348)
T 1ek6_A 306 ACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPS 342 (348)
T ss_dssp EECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred hhccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccc
Confidence 6779999999999999999999999999999987643
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=351.07 Aligned_cols=306 Identities=22% Similarity=0.329 Sum_probs=255.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC--CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKR--GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+|+||||||+||||++|+++|+++ |++|++++|+....... ........+++++.+|++|.+++.++++++ |
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 77 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKA----NLEAILGDRVELVVGDIADAELVDKLAAKA--D 77 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGG----GTGGGCSSSEEEEECCTTCHHHHHHHHTTC--S
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChh----HHhhhccCCeEEEECCCCCHHHHHHHhhcC--C
Confidence 579999999999999999999999 89999999965321110 111122368999999999999999999987 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC------------CCCCCCCCC
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKK------------VPFSEKDRT 224 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~------------~~~~e~~~~ 224 (424)
+||||||.........+++..+++|+.|+.+++++|.+.++ +||++||.++||.... .+++|+++.
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~ 155 (348)
T 1oc2_A 78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY 155 (348)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCC
T ss_pred EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEecccceeCCCcccccccccccccCCCcCCCCCC
Confidence 99999998765555667889999999999999999999875 9999999999986532 567777655
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHH
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYID 304 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 304 (424)
.+.+.|+.+|+++|.+++.++.++|++++++||+.||||+.....++..++..+..+.++.++ ++++..++|+|++
T Consensus 156 -~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~ 231 (348)
T 1oc2_A 156 -NPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY---GEGKNVRDWIHTN 231 (348)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEE---TTSCCEEECEEHH
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEe---cCCCceEeeEEHH
Confidence 678999999999999999999888999999999999999876556677788888888888776 5778899999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccc-cccccCCCCCCcccccCChHH
Q 042406 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE-TKVLPLPRNGDVQFTHANISL 383 (424)
Q Consensus 305 Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~~d~s~ 383 (424)
|+|++++.+++... .+++||+++++++|+.|+++.+.+.+|.+.. +...+ .+........+|++|
T Consensus 232 Dva~~~~~~~~~~~-------------~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~k 297 (348)
T 1oc2_A 232 DHSTGVWAILTKGR-------------MGETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVT-DRAGHDLRYAIDASK 297 (348)
T ss_dssp HHHHHHHHHHHHCC-------------TTCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEEC-CCTTCCCBCCBCCHH
T ss_pred HHHHHHHHHhhCCC-------------CCCeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCC-CCCCcccccccCHHH
Confidence 99999999987542 1279999999999999999999999998753 22222 223333456789999
Q ss_pred HHhHcCCcccCC-HHHHHHHHHHHHHHH
Q 042406 384 AQRELGYMPTTD-LETGLKKFVRWYLSY 410 (424)
Q Consensus 384 ~~~~LG~~p~~~-l~~~l~~~v~~~~~~ 410 (424)
+++.|||+|+++ ++++|+++++|++++
T Consensus 298 ~~~~lG~~p~~~~~~~~l~~~~~~~~~~ 325 (348)
T 1oc2_A 298 LRDELGWTPQFTDFSEGLEETIQWYTDN 325 (348)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCCcHHHHHHHHHHHHHHh
Confidence 999999999988 999999999999875
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-46 Score=360.86 Aligned_cols=311 Identities=26% Similarity=0.393 Sum_probs=252.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHh--CCCeEEEEeCCCCchhhhHHH----HHhhhhccCCeEEEEccCCCHHHHHH
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKK--RGDGVLGLDNFNNYYETSLKK----ARKGLLERAGVFVIDADINDKSLLDK 148 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~--~g~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~v~~~~~Dl~d~~~v~~ 148 (424)
+.+++|+||||||+||||++|+++|++ +|++|++++|+.+........ .........++.++.+|++|.+++.+
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 85 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRR 85 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHH
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHH
Confidence 356789999999999999999999999 999999999966421100000 00111234578999999999999999
Q ss_pred H-hhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 042406 149 I-FNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227 (424)
Q Consensus 149 ~-~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~ 227 (424)
+ .. ++|+||||||... ....+++..+++|+.|+.+++++|++.++ +||++||+++||.... +++|+++. .|
T Consensus 86 ~~~~--~~D~vih~A~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~--~~V~~SS~~vyg~~~~-~~~E~~~~-~p 157 (362)
T 3sxp_A 86 LEKL--HFDYLFHQAAVSD--TTMLNQELVMKTNYQAFLNLLEIARSKKA--KVIYASSAGVYGNTKA-PNVVGKNE-SP 157 (362)
T ss_dssp HTTS--CCSEEEECCCCCG--GGCCCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEEEGGGGCSCCS-SBCTTSCC-CC
T ss_pred hhcc--CCCEEEECCccCC--ccccCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEeCcHHHhCCCCC-CCCCCCCC-CC
Confidence 8 54 5599999999744 35677889999999999999999999885 4999999999998766 88888866 78
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----CcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 228 ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD----MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
.+.|+.||+++|.+++.++.+ +++++|||++||||+.... .++..++..+..+.++.++ +++++.++|+|+
T Consensus 158 ~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v 232 (362)
T 3sxp_A 158 ENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLF---EFGEQLRDFVYI 232 (362)
T ss_dssp SSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECS---GGGCCEEECEEH
T ss_pred CChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEE---CCCCeEEccEEH
Confidence 899999999999999998765 8999999999999987543 5677888888888887765 567889999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHH
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISL 383 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~ 383 (424)
+|+|++++.+++.+. . ++||+++++++|+.|+++.+.+.+| +.++...|.+...+.....+|++|
T Consensus 233 ~Dva~ai~~~~~~~~-------------~-g~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~d~~k 297 (362)
T 3sxp_A 233 EDVIQANVKAMKAQK-------------S-GVYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAHIEP 297 (362)
T ss_dssp HHHHHHHHHHTTCSS-------------C-EEEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-------CCCCBCCHH
T ss_pred HHHHHHHHHHHhcCC-------------C-CEEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCCcCcccceecCHHH
Confidence 999999999998643 2 4999999999999999999999999 766665554424455667899999
Q ss_pred HHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 384 AQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 384 ~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
+++.|||+|.++++++|+++++|+++.++.
T Consensus 298 ~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 327 (362)
T 3sxp_A 298 TILDLDYTPLYDLESGIKDYLPHIHAIFKG 327 (362)
T ss_dssp HHHHHCCCCCCCHHHHHHHHHHHHTCC---
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999887654
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=357.17 Aligned_cols=324 Identities=21% Similarity=0.343 Sum_probs=254.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHH-hCCCeEEEEeCCCCch--------hhhHHHHHhhhhc---cCC---eEEEEccCCCH
Q 042406 79 GLTVLVTGAAGFVGSHVSLALK-KRGDGVLGLDNFNNYY--------ETSLKKARKGLLE---RAG---VFVIDADINDK 143 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~-~~g~~V~~~~r~~~~~--------~~~~~~~~~~~~~---~~~---v~~~~~Dl~d~ 143 (424)
+|+||||||+||||++|+++|+ ++|++|++++|+.... ............. ..+ +.++.+|++|.
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 5799999999999999999999 9999999999976432 1111110111111 124 89999999999
Q ss_pred HHHHHHhhccC-ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-------C
Q 042406 144 SLLDKIFNVVA-FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNK-------K 215 (424)
Q Consensus 144 ~~v~~~~~~~~-~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~-------~ 215 (424)
+++.++++..+ +|+||||||.........+++..+++|+.|+.+++++|++.+++ +||++||.++|+... .
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~iv~~SS~~v~g~~~~~~~~~~~ 160 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTNA 160 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCC-EEEEECCHHHhCCCCcccccccc
Confidence 99999998554 79999999987655455678889999999999999999998875 999999999998765 5
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC---------CCCcHHHHH----HHHHcC
Q 042406 216 VPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR---------PDMAYFFFT----RDIIRG 282 (424)
Q Consensus 216 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~---------~~~~~~~~~----~~~~~~ 282 (424)
.+++|+++. .|.+.|+.||+++|.+++.++.+++++++++||++||||+.. ...+++.++ ..+..+
T Consensus 161 ~~~~E~~~~-~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 239 (397)
T 1gy8_A 161 EPIDINAKK-SPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPD 239 (397)
T ss_dssp CCBCTTSCC-BCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC
T ss_pred cCcCccCCC-CCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHhc
Confidence 678888765 778999999999999999999888999999999999999632 233444444 244444
Q ss_pred C------------ceeEEec---CCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCc---ceEEcCCCCcc
Q 042406 283 K------------RITVYEA---PDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEF---RIFNLGNTTPV 344 (424)
Q Consensus 283 ~------------~~~~~~~---~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~ 344 (424)
. ++.++.. .+++++.++|||++|+|++++.+++.+..... ...+ ++||+++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~-------~~~~~~~~~~ni~~~~~~ 312 (397)
T 1gy8_A 240 QRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGP-------NDKSKYFSVFNLGTSRGY 312 (397)
T ss_dssp -----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCT-------TTGGGSEEEEEESCSCCE
T ss_pred CccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhccccccc-------ccccCCCcEEEeCCCCcc
Confidence 3 3555520 01567899999999999999999986542100 0012 69999999999
Q ss_pred cHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCcccC-CHHHHHHHHHHHHHHHhc
Q 042406 345 PVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTT-DLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 345 s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p~~-~l~~~l~~~v~~~~~~~~ 412 (424)
|+.|+++.+.+.+|.+.+....+. ...+.....+|++|+++.|||+|++ +++++|+++++|++++.+
T Consensus 313 s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~~~ 380 (397)
T 1gy8_A 313 SVREVIEVARKTTGHPIPVRECGR-REGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPN 380 (397)
T ss_dssp EHHHHHHHHHHHHCCCCCEEEECC-CTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTT
T ss_pred cHHHHHHHHHHHhCCCCCeeeCCC-CCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhccc
Confidence 999999999999998776655443 2344556789999999999999998 999999999999988744
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=345.99 Aligned_cols=319 Identities=25% Similarity=0.416 Sum_probs=251.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||+||||++++++|+++|++|++++|............. .....++.++.+|++|.+++.+++++.++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi 78 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIE--RLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHH--HHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHH--hhcCCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence 589999999999999999999999999999885433222211111 112346889999999999999999875679999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
||||.........+++..+++|+.|+.+++++|++.+++ +||++||.++||.....+++|+.+...+.+.|+.||+++|
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 157 (338)
T 1udb_A 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHH
T ss_pred ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHHHH
Confidence 999986554455677889999999999999999988875 9999999999997666677777765334789999999999
Q ss_pred HHHHHHHHHh-CCcEEEEEeccccCCCC------C----CCCcHHHHHHHHH-cCCceeEEec---CCCCccccccccHH
Q 042406 240 AIAHAYNHIY-GLSITGLRFFTVYGPWG------R----PDMAYFFFTRDII-RGKRITVYEA---PDGASVARDFTYID 304 (424)
Q Consensus 240 ~~~~~~~~~~-~i~~~~vrp~~v~G~~~------~----~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~i~v~ 304 (424)
.+++.++.++ +++++++||+++|||+. . ...+.+.+..... .+..+.++.. .+++++.++|||++
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 237 (338)
T 1udb_A 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237 (338)
T ss_dssp HHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHH
T ss_pred HHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHH
Confidence 9999998876 89999999999999842 1 1234555554444 3445555521 12467889999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHH
Q 042406 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLA 384 (424)
Q Consensus 305 Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~ 384 (424)
|+|++++.+++..... ..+++||+++++++|+.|+++.+.+.+|.+.+....+. ...+.....+|++|+
T Consensus 238 Dva~a~~~~l~~~~~~----------~~~~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~ 306 (338)
T 1udb_A 238 DLADGHVVAMEKLANK----------PGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-REGDLPAYWADASKA 306 (338)
T ss_dssp HHHHHHHHHHHHHTTC----------CEEEEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECC-CTTCCSBCCBCCHHH
T ss_pred HHHHHHHHHHhhhhcc----------CCCcEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCC-CCCchhhhhcCHHHH
Confidence 9999999998764211 11279999999999999999999999998766554443 234455677899999
Q ss_pred HhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 385 QRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 385 ~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
+++|||+|+++++++|+++++|++++..
T Consensus 307 ~~~lG~~p~~~l~~~l~~~~~w~~~~~~ 334 (338)
T 1udb_A 307 DRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999987643
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=358.30 Aligned_cols=308 Identities=23% Similarity=0.355 Sum_probs=249.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.+++|+||||||+||||++|+++|+++| ++|++++|+.+...... ....+++++.+|++|.+++.++++++
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l-------~~~~~v~~~~~Dl~d~~~l~~~~~~~- 100 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINV-------PDHPAVRFSETSITDDALLASLQDEY- 100 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGS-------CCCTTEEEECSCTTCHHHHHHCCSCC-
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhc-------cCCCceEEEECCCCCHHHHHHHhhCC-
Confidence 3678999999999999999999999999 99999999754321110 01457899999999999999999855
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCcccCCCCCCCCC--CCCC--CC-CCC
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS-DPQPAIVWASSSSVYGVNKKVPFS--EKDR--TD-QPA 228 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~~v~~SS~~vyg~~~~~~~~--e~~~--~~-~~~ 228 (424)
|+|||+||.........+++..+++|+.++.+++++|++. +++ +||++||.++||.....+++ |+++ +. .|.
T Consensus 101 -d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~ 178 (377)
T 2q1s_A 101 -DYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGCSIAEKTFDDAKATEETDIVSLHNND 178 (377)
T ss_dssp -SEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC--------------CCCCCCCSSCCC
T ss_pred -CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHHHcCCCCCCCcCcccccccccccCCC
Confidence 9999999987665556678899999999999999999998 765 99999999999976655677 7662 32 567
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC---------CC----CCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 229 SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWG---------RP----DMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
+.|+.+|+++|.+++.+++++|++++++||+.||||+. .. ..++..++..+..+.++.++ ++++
T Consensus 179 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~g~ 255 (377)
T 2q1s_A 179 SPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLE---NGGV 255 (377)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCS---GGGC
T ss_pred CchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEe---CCCC
Confidence 89999999999999999888899999999999999976 32 45677788888888877665 5678
Q ss_pred cccccccHHHHHHH-HHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCc
Q 042406 296 VARDFTYIDDIVKG-CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDV 374 (424)
Q Consensus 296 ~~~~~i~v~Dva~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~ 374 (424)
..++|+|++|+|++ ++.+++.+. . ++||+++++++|+.|+++.+.+.+|.+.++...|. +..+.
T Consensus 256 ~~~~~i~v~Dva~a~i~~~~~~~~-------------~-g~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~-~~~~~ 320 (377)
T 2q1s_A 256 ATRDFIFVEDVANGLIACAADGTP-------------G-GVYNIASGKETSIADLATKINEITGNNTELDRLPK-RPWDN 320 (377)
T ss_dssp CEECCEEHHHHHHHHHHHHHHCCT-------------T-EEEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCC-CGGGC
T ss_pred eEEeeEEHHHHHHHHHHHHHhcCC-------------C-CeEEecCCCceeHHHHHHHHHHHhCCCCCceeCCC-Ccccc
Confidence 89999999999999 999887642 2 49999999999999999999999998876655442 23334
Q ss_pred c-cccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHh
Q 042406 375 Q-FTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411 (424)
Q Consensus 375 ~-~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~ 411 (424)
. ...+|++|++++|||+|.++++++|+++++|+++..
T Consensus 321 ~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 358 (377)
T 2q1s_A 321 SGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANL 358 (377)
T ss_dssp C-CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHTH
T ss_pred ccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhh
Confidence 4 678999999999999999999999999999998864
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-44 Score=354.57 Aligned_cols=321 Identities=23% Similarity=0.294 Sum_probs=251.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhh-------------HHHHH-hhhhccCCeEEEEccCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETS-------------LKKAR-KGLLERAGVFVIDADIND 142 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-------------~~~~~-~~~~~~~~v~~~~~Dl~d 142 (424)
-.+++||||||+||||++|+++|+++|++|++++|........ ..... .......+++++.+|++|
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d 88 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD 88 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence 3678999999999999999999999999999999854321100 00000 001124578999999999
Q ss_pred HHHHHHHhhccCccEEEEcccccCchhhccChH---HHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCC
Q 042406 143 KSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPN---SYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 143 ~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~---~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
.+++.+++++.++|+||||||.........+++ ..+++|+.|+.+++++|++.+.+++||++||.++||... .+++
T Consensus 89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~~ 167 (404)
T 1i24_A 89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIE 167 (404)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBC
T ss_pred HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCCC
Confidence 999999999856699999999876554445554 488999999999999999988645999999999998654 3555
Q ss_pred CCC-------------CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC-----------------C
Q 042406 220 EKD-------------RTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP-----------------D 269 (424)
Q Consensus 220 e~~-------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~-----------------~ 269 (424)
|+. .+..|.+.|+.||+++|.+++.++.++|+++++|||++||||+... .
T Consensus 168 E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~ 247 (404)
T 1i24_A 168 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 247 (404)
T ss_dssp SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTC
T ss_pred ccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchh
Confidence 541 1336778999999999999999988889999999999999997642 3
Q ss_pred CcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHH
Q 042406 270 MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRL 349 (424)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el 349 (424)
..+..++..+..+.++.++ +++++.++|+|++|+|++++.+++.+... ...++||+++ +++|+.|+
T Consensus 248 ~~~~~~~~~~~~g~~~~~~---g~g~~~~~~i~v~Dva~a~~~~l~~~~~~----------g~~~~yni~~-~~~s~~e~ 313 (404)
T 1i24_A 248 TALNRFCVQAAVGHPLTVY---GKGGQTRGYLDIRDTVQCVEIAIANPAKA----------GEFRVFNQFT-EQFSVNEL 313 (404)
T ss_dssp CHHHHHHHHHHHTCCEEEE---TTSCCEEEEEEHHHHHHHHHHHHHSCCCT----------TCEEEEEECS-EEEEHHHH
T ss_pred hHHHHHHHHHHcCCeeEEe---CCCCceECcEEHHHHHHHHHHHHhCcccC----------CCceEEEECC-CCCcHHHH
Confidence 4577788888999888776 67788999999999999999999865311 0116999998 88999999
Q ss_pred HHHHHHH---hCcccccccccCCCC-CCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 350 VSLLEKI---LKVKAETKVLPLPRN-GDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 350 ~~~i~~~---~g~~~~~~~~~~~~~-~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
++.+.+. +|.+.+....|.... .......+|++|++ +|||+|+++++++++++++|++.+.+.
T Consensus 314 ~~~i~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l~~~~~~~~~~~~~ 380 (404)
T 1i24_A 314 ASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFKDR 380 (404)
T ss_dssp HHHHHHHHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhhCCCccccccCcccCccccceEecCHHHHH-HcCCCcCcCHHHHHHHHHHHHHhhhhc
Confidence 9999998 777765544443322 12334568999997 799999999999999999999876654
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=346.30 Aligned_cols=309 Identities=23% Similarity=0.345 Sum_probs=250.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-HHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-KSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~v~~~~~~~~~d~ 157 (424)
|+||||||+||||++|+++|+++ |++|++++|+.+.... .....+++++.+|++| .+.+.++++++ |+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~~~~~~~D~~~~~~~~~~~~~~~--d~ 70 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR--------FLNHPHFHFVEGDISIHSEWIEYHVKKC--DV 70 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGG--------GTTCTTEEEEECCTTTCSHHHHHHHHHC--SE
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHH--------hhcCCCeEEEeccccCcHHHHHhhccCC--CE
Confidence 68999999999999999999998 8999999997643221 1123579999999998 46788888866 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC------CCCCChH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT------DQPASLY 231 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~------~~~~~~Y 231 (424)
||||||.........+++..+++|+.++.+++++|++.+ + +||++||.++||.....+++|+++. ..|.+.|
T Consensus 71 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y 148 (345)
T 2bll_A 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 148 (345)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-C-EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH
T ss_pred EEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-C-eEEEEecHHHcCCCCCCCcCCcccccccCcccCccccc
Confidence 999999876544456778899999999999999999987 4 9999999999997766677777643 1344589
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--------CCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 232 AATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP--------DMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 232 ~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
+.+|+++|.+++.++++.|++++++||+.||||+... ...+..++..+..+.++.++ +++++.++|+|+
T Consensus 149 ~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v 225 (345)
T 2bll_A 149 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTDI 225 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEG---GGSCCEEECEEH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEE---CCCCEEEEEEEH
Confidence 9999999999999988889999999999999997642 23456777788888887765 567789999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC-cccHHHHHHHHHHHhCcccccccccCCC------------
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT-PVPVSRLVSLLEKILKVKAETKVLPLPR------------ 370 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~s~~el~~~i~~~~g~~~~~~~~~~~~------------ 370 (424)
+|+|++++.+++.+... ..+++||+++++ ++|+.|+++.+.+.+|.+......+...
T Consensus 226 ~Dva~a~~~~~~~~~~~----------~~g~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 295 (345)
T 2bll_A 226 RDGIEALYRIIENAGNR----------CDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYG 295 (345)
T ss_dssp HHHHHHHHHHHHCGGGT----------TTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC-------
T ss_pred HHHHHHHHHHHhhcccc----------CCCceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhcc
Confidence 99999999999865321 123899999986 8999999999999998765433332210
Q ss_pred --CCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 371 --NGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 371 --~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
..+.....+|++|++++|||+|+++++++|+++++|++++.+.
T Consensus 296 ~~~~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~~ 340 (345)
T 2bll_A 296 KGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (345)
T ss_dssp -----CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred ccccchhhhcccHHHHHHhcCCCccccHHHHHHHHHHHHHHcCCC
Confidence 0123456789999999999999999999999999999887543
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=349.51 Aligned_cols=309 Identities=27% Similarity=0.419 Sum_probs=253.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCch-hhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYY-ETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|+||||||+||||++|+++|+++ |++|++++|+.... .... .......+++++.+|++|.+++.++++..++|+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL----SDISESNRYNFEHADICDSAEITRIFEQYQPDA 76 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG----TTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh----hhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCE
Confidence 57999999999999999999998 79999999965211 1111 111123578999999999999999998556699
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc--CCC------CeEEEecCCcccCCCCC--C--------CCC
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS--DPQ------PAIVWASSSSVYGVNKK--V--------PFS 219 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~--~~~------~~~v~~SS~~vyg~~~~--~--------~~~ 219 (424)
||||||.........+++..+++|+.|+.+++++|.+. +++ .+||++||.++||.... . +++
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~ 156 (361)
T 1kew_A 77 VMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFT 156 (361)
T ss_dssp EEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBC
T ss_pred EEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCC
Confidence 99999987655556778899999999999999999987 653 39999999999986532 1 677
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
|+++. .+.+.|+.||+++|.+++.++.++|+++++|||+.||||+.....++..++..+..+.++.++ ++++..++
T Consensus 157 E~~~~-~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 232 (361)
T 1kew_A 157 ETTAY-APSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRD 232 (361)
T ss_dssp TTSCC-CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEE---TTSCCEEE
T ss_pred CCCCC-CCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEc---CCCceeEe
Confidence 77655 778999999999999999999888999999999999999876555667778888888888776 57788999
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccc--------ccccCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAET--------KVLPLPRN 371 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~--------~~~~~~~~ 371 (424)
|+|++|+|++++.+++... .+++||+++++++|+.|+++.+.+.+|.+.+. ...+ .+.
T Consensus 233 ~i~v~Dva~a~~~~~~~~~-------------~g~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~-~~~ 298 (361)
T 1kew_A 233 WLYVEDHARALHMVVTEGK-------------AGETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVA-DRP 298 (361)
T ss_dssp EEEHHHHHHHHHHHHHHCC-------------TTCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEEC-CCT
T ss_pred eEEHHHHHHHHHHHHhCCC-------------CCCEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecC-CCC
Confidence 9999999999999987642 12799999999999999999999999876431 1111 122
Q ss_pred CCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHH
Q 042406 372 GDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 372 ~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~ 410 (424)
.......+|++|++++|||+|+++++++|+++++|++++
T Consensus 299 ~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 299 GHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp TCCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred cccceeecCHHHHHHHhCCCCccCHHHHHHHHHHHHHhc
Confidence 333456789999999999999999999999999999875
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-44 Score=344.23 Aligned_cols=315 Identities=22% Similarity=0.260 Sum_probs=254.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++|+||||||+||||++|+++|+++|++|++++|+.+...... . .......+++++.+|++|.+++.++++++++|+
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~--~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 78 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWR--L-KELGIENDVKIIHMDLLEFSNIIRTIEKVQPDE 78 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHH--H-HHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccccc--H-hhccccCceeEEECCCCCHHHHHHHHHhcCCCE
Confidence 5789999999999999999999999999999999775432211 1 111123478999999999999999999877899
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKA 237 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~ 237 (424)
||||||.........+++..+++|+.|+.+++++|.+.++.++||++||.++||.....+++|+.+. .+.+.|+.||++
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~-~~~~~Y~~sK~~ 157 (345)
T 2z1m_A 79 VYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPF-YPRSPYAVAKLF 157 (345)
T ss_dssp EEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHH
T ss_pred EEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccCCC-CCCChhHHHHHH
Confidence 9999998766555677889999999999999999998876349999999999998777778887765 678999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcH---HHHHHHHHcCCcee-EEecCCCCccccccccHHHHHHHHHHH
Q 042406 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAY---FFFTRDIIRGKRIT-VYEAPDGASVARDFTYIDDIVKGCLAG 313 (424)
Q Consensus 238 ~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~v~Dva~a~~~~ 313 (424)
+|.+++.++.+++++++++|++++|||+...+... ..++..+..+.... .+ ++++..++|+|++|+|++++.+
T Consensus 158 ~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~Dva~a~~~~ 234 (345)
T 2z1m_A 158 GHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVL---GNLNAKRDWGYAPEYVEAMWLM 234 (345)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE---SCTTCEECCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeee---CCCCceeeeEEHHHHHHHHHHH
Confidence 99999999988899999999999999986544322 23344555665433 33 5677889999999999999999
Q ss_pred hhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccc-------------------cccC-CCCCC
Q 042406 314 LDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETK-------------------VLPL-PRNGD 373 (424)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~-------------------~~~~-~~~~~ 373 (424)
++.+.. ++||+++++++|+.|+++.+.+.+|.+.++. ..+. .+..+
T Consensus 235 ~~~~~~--------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 300 (345)
T 2z1m_A 235 MQQPEP--------------DDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAE 300 (345)
T ss_dssp HTSSSC--------------CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSC
T ss_pred HhCCCC--------------ceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCC
Confidence 976431 6899999999999999999999999875432 0010 12233
Q ss_pred cccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 374 VQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 374 ~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
.....+|++|++++|||+|+++++++|+++++|+++....
T Consensus 301 ~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~ 340 (345)
T 2z1m_A 301 VDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRD 340 (345)
T ss_dssp CCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHC
T ss_pred cceeecCHHHHHHHcCCcccCCHHHHHHHHHHHHHHHhcc
Confidence 4456689999999999999999999999999999987654
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-44 Score=349.41 Aligned_cols=305 Identities=25% Similarity=0.348 Sum_probs=253.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
..+|+||||||+||||++|+++|+++|++|++++|+.+.... ....+++++.+|++|.+++.++++++ |
T Consensus 27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------~~~~~v~~~~~Dl~d~~~~~~~~~~~--d 95 (379)
T 2c5a_A 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT---------EDMFCDEFHLVDLRVMENCLKVTEGV--D 95 (379)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC---------GGGTCSEEEECCTTSHHHHHHHHTTC--S
T ss_pred ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchh---------hccCCceEEECCCCCHHHHHHHhCCC--C
Confidence 467899999999999999999999999999999997643211 11347899999999999999999865 9
Q ss_pred EEEEcccccCch-hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC-----CCCCCCCC-CCCCCC
Q 042406 157 HVMHLAAQAGVR-YAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKK-----VPFSEKDR-TDQPAS 229 (424)
Q Consensus 157 ~vi~~Ag~~~~~-~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~-----~~~~e~~~-~~~~~~ 229 (424)
+|||+|+..... ....+++..+++|+.++.+++++|++.+++ +||++||.++|+.... .+++|+++ +..+.+
T Consensus 96 ~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~ 174 (379)
T 2c5a_A 96 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD 174 (379)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred EEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCC
Confidence 999999976542 225677889999999999999999998875 9999999999985432 34556542 225678
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----CcHHHHHHHHHcCCc-eeEEecCCCCccccccccHH
Q 042406 230 LYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD----MAYFFFTRDIIRGKR-ITVYEAPDGASVARDFTYID 304 (424)
Q Consensus 230 ~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~ 304 (424)
.|+.+|+++|.+++.+++++|+++++|||+.||||+.... ..+..++..+..+.+ +.++ +++++.++|+|++
T Consensus 175 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~ 251 (379)
T 2c5a_A 175 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW---GDGLQTRSFTFID 251 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEE---SCSCCEECCEEHH
T ss_pred hhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEe---CCCCeeEEEEEHH
Confidence 9999999999999999888899999999999999976432 256677878877776 6665 5778899999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHH
Q 042406 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLA 384 (424)
Q Consensus 305 Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~ 384 (424)
|+|++++.+++.+. +++||+++++++|+.|+++.+.+.+|.+.+....|.+ .+.....+|++|+
T Consensus 252 Dva~ai~~~l~~~~--------------~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~--~~~~~~~~d~~k~ 315 (379)
T 2c5a_A 252 ECVEGVLRLTKSDF--------------REPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP--EGVRGRNSDNNLI 315 (379)
T ss_dssp HHHHHHHHHHHSSC--------------CSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC--CCCSBCEECCHHH
T ss_pred HHHHHHHHHhhccC--------------CCeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCC--CCcccccCCHHHH
Confidence 99999999997641 1689999999999999999999999988766655543 2334457899999
Q ss_pred HhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 385 QRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 385 ~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
+++|||+|+++++++|+++++|++++..
T Consensus 316 ~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 343 (379)
T 2c5a_A 316 KEKLGWAPNMRLKEGLRITYFWIKEQIE 343 (379)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999988654
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-44 Score=348.18 Aligned_cols=319 Identities=21% Similarity=0.236 Sum_probs=251.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchh-hhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYE-TSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
||+||||||+||||++++++|+++|++|++++|+.+... .......... ....+++++.+|++|.+++.+++++.++|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999654311 0011000000 01357899999999999999999987789
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ--PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~--~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
+||||||.........+++..+++|+.|+.+++++|++.++. ++||++||.++||.....+++|+++. .|.+.|+.|
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~-~~~~~Y~~s 159 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVA 159 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCC-CCCSHHHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCC-CCCChHHHH
Confidence 999999986655556677889999999999999999998862 49999999999997766678888765 678999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCc---HHHHHHHHHcCCc-eeEEecCCCCccccccccHHHHHHHH
Q 042406 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMA---YFFFTRDIIRGKR-ITVYEAPDGASVARDFTYIDDIVKGC 310 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~Dva~a~ 310 (424)
|+++|.+++.++.+++++++++|++.+|||+...+.. +..++..+..+.. ...+ +++++.++|+|++|+|+++
T Consensus 160 K~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~~~~~~~~i~v~Dva~a~ 236 (372)
T 1db3_A 160 KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL---GNMDSLRDWGHAKDYVKMQ 236 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEE---SCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceee---cCCCceeeeeEHHHHHHHH
Confidence 9999999999998889999999999999997654322 3345556666764 3333 6778899999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccccc-------------------------
Q 042406 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKV------------------------- 365 (424)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~------------------------- 365 (424)
+.+++.+. +++||+++++++|+.|+++.+.+.+|.+.++..
T Consensus 237 ~~~~~~~~--------------~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 302 (372)
T 1db3_A 237 WMMLQQEQ--------------PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDV 302 (372)
T ss_dssp HHTTSSSS--------------CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCE
T ss_pred HHHHhcCC--------------CceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccc
Confidence 99987543 168999999999999999999999997654221
Q ss_pred ----ccC-CCCCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhccCC
Q 042406 366 ----LPL-PRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSAS 415 (424)
Q Consensus 366 ----~~~-~~~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~~~ 415 (424)
.+. .+..+.....+|++|++++|||+|+++++|+|+++++||++..+...
T Consensus 303 ~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~ 357 (372)
T 1db3_A 303 IIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHS 357 (372)
T ss_dssp EEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred eeeccccccCCCchhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhccc
Confidence 010 12333445678999999999999999999999999999999876544
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=346.93 Aligned_cols=318 Identities=20% Similarity=0.209 Sum_probs=253.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhh-HHHHHhhhh--ccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETS-LKKARKGLL--ERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~--~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+||||||+||||++|+++|+++|++|++++|+.+..... ......... ...+++++.+|++|.+++.++++++++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 6899999999999999999999999999999976431110 000000000 2357899999999999999999987789
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ--PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~--~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
+||||||.........+++..+++|+.|+.+++++|++.++. ++||++||.++|+.....+++|+++. .|.+.|+.+
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~-~~~~~Y~~s 183 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPF-YPRSPYGAA 183 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCC-CCCSHHHHH
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCC-CCCChhHHH
Confidence 999999987655456678889999999999999999998862 49999999999997766788888765 678999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCc---HHHHHHHHHcCCce-eEEecCCCCccccccccHHHHHHHH
Q 042406 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMA---YFFFTRDIIRGKRI-TVYEAPDGASVARDFTYIDDIVKGC 310 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~v~Dva~a~ 310 (424)
|+++|.+++.++.+++++++++||+.+|||+...+.. +..++..+..+... ..+ +++++.++|+|++|+|+++
T Consensus 184 K~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~~~~~~~~i~v~Dva~a~ 260 (375)
T 1t2a_A 184 KLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL---GNLDAKRDWGHAKDYVEAM 260 (375)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEE---SCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEe---CCCCceeeeEEHHHHHHHH
Confidence 9999999999998889999999999999997654332 23445556666543 333 5778899999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccc-------------------cccC-CC
Q 042406 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETK-------------------VLPL-PR 370 (424)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~-------------------~~~~-~~ 370 (424)
+.+++.+.. ++||+++++++|+.|+++.+.+.+|.+.++. ..+. .+
T Consensus 261 ~~~~~~~~~--------------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 326 (375)
T 1t2a_A 261 WLMLQNDEP--------------EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYR 326 (375)
T ss_dssp HHHHHSSSC--------------CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSC
T ss_pred HHHHhcCCC--------------ceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCC
Confidence 999976431 6899999999999999999999999875422 0010 12
Q ss_pred CCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhccCC
Q 042406 371 NGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSAS 415 (424)
Q Consensus 371 ~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~~~ 415 (424)
..+.....+|++|++++|||+|+++++++|+++++|+++......
T Consensus 327 ~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~ 371 (375)
T 1t2a_A 327 PTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRTNP 371 (375)
T ss_dssp SSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHHC-
T ss_pred cccchhhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHhhccCC
Confidence 333445678999999999999999999999999999999876543
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=346.13 Aligned_cols=302 Identities=26% Similarity=0.396 Sum_probs=253.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+.+|+||||||+||||++|+++|+++|++|++++|+.+....... .........+++++.+|++ ++|
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~------------~~d 71 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPE-GTGKFLEKPVLELEERDLS------------DVR 71 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCT-TSSEEECSCGGGCCHHHHT------------TEE
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchh-hhhhhccCCCeeEEeCccc------------cCC
Confidence 457899999999999999999999999999999997652100000 0001112345666777766 559
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKK 236 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~ 236 (424)
+|||+|+.........++...++ |+.++.+++++|++.+++ +|||+||.++|+.....+++|+++. .|.+.|+.+|+
T Consensus 72 ~vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~-~~v~~SS~~v~~~~~~~~~~E~~~~-~p~~~Y~~sK~ 148 (321)
T 3vps_A 72 LVYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVP-KVVVGSTCEVYGQADTLPTPEDSPL-SPRSPYAASKV 148 (321)
T ss_dssp EEEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHH
T ss_pred EEEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCC-eEEEecCHHHhCCCCCCCCCCCCCC-CCCChhHHHHH
Confidence 99999998877666677777788 999999999999999975 9999999999998877788888876 78899999999
Q ss_pred HHHHHHHHHHHHhCC-cEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhh
Q 042406 237 AGEAIAHAYNHIYGL-SITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i-~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 315 (424)
++|.+++.+++++++ +++++||++||||+...+.++..++..+..+.++.++ ++++..++|+|++|+|++++.+++
T Consensus 149 ~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~v~Dva~~~~~~~~ 225 (321)
T 3vps_A 149 GLEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVE---GDGEQRRDFTYITDVVDKLVALAN 225 (321)
T ss_dssp HHHHHHHHHHHSSSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEE---TTSCCEECEEEHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHcCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEe---CCCCceEceEEHHHHHHHHHHHHh
Confidence 999999999988899 9999999999999887777788889999999988887 678899999999999999999998
Q ss_pred hccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCcc-cC
Q 042406 316 TAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMP-TT 394 (424)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p-~~ 394 (424)
.+.. | +||+++++++|+.|+++.+. .+|.+.++...+.. ..+.....+|++|+++.|||+| .+
T Consensus 226 ~~~~-------------g-~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lG~~p~~~ 289 (321)
T 3vps_A 226 RPLP-------------S-VVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPR-PNEITEFRADTALQTRQIGERSGGI 289 (321)
T ss_dssp SCCC-------------S-EEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCC-TTCCSBCCBCCHHHHHHHCCCSCCC
T ss_pred cCCC-------------C-eEEecCCCcccHHHHHHHHH-HhCCCCccccCCCC-CCCcceeeccHHHHHHHhCCCCCcC
Confidence 7541 3 99999999999999999999 99988877665543 4556677899999999999999 88
Q ss_pred CHHHHHHHHHHHHHHHhcc
Q 042406 395 DLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 395 ~l~~~l~~~v~~~~~~~~~ 413 (424)
+++++|+++++|++++...
T Consensus 290 ~~~~~l~~~~~~~~~~~~~ 308 (321)
T 3vps_A 290 GIEEGIRLTLEWWQSRDLD 308 (321)
T ss_dssp CHHHHHHHHHHHHHTSCTT
T ss_pred CHHHHHHHHHHHHHhCCCc
Confidence 9999999999999886543
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-44 Score=342.14 Aligned_cols=303 Identities=20% Similarity=0.325 Sum_probs=246.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.+|+||||||+||||++|+++|+++|++|++++|+. .+|++|.+++.++++..++|+
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~-----------------------~~D~~d~~~~~~~~~~~~~d~ 58 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLLDSRAVHDFFASERIDQ 58 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------------TCCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc-----------------------cCCccCHHHHHHHHHhcCCCE
Confidence 357899999999999999999999999999988731 269999999999999556699
Q ss_pred EEEcccccCc-hhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC---CCCCC-ChHH
Q 042406 158 VMHLAAQAGV-RYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR---TDQPA-SLYA 232 (424)
Q Consensus 158 vi~~Ag~~~~-~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~---~~~~~-~~Y~ 232 (424)
|||+|+.... .....+++..+++|+.++.+++++|++.+++ +||++||.++||.....+++|+++ +..|. +.|+
T Consensus 59 vih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~ 137 (321)
T 1e6u_A 59 VYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYA 137 (321)
T ss_dssp EEECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHH
T ss_pred EEEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccH
Confidence 9999998652 3345677889999999999999999998875 999999999999876677888763 22443 5899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CCcHHHHHHHHHc----C-CceeEEecCCCCccccccccH
Q 042406 233 ATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP----DMAYFFFTRDIIR----G-KRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 233 ~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~i~v 303 (424)
.+|+++|.+++.++++++++++++||+.||||+... ..++..++..+.. | .++.++ ++++..++|+|+
T Consensus 138 ~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~g~~~~~~i~v 214 (321)
T 1e6u_A 138 IAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVW---GSGTPMREFLHV 214 (321)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEE---SCSCCEECEEEH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEc---CCCCEEEEeEEH
Confidence 999999999999988889999999999999997753 2456667776654 3 566665 578889999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHH
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISL 383 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~ 383 (424)
+|+|++++.+++++...... .+...+++||+++++++|+.|+++.+.+.+|.+.++...+.. +.......+|++|
T Consensus 215 ~Dva~~~~~~~~~~~~~~~~----~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~d~~k 289 (321)
T 1e6u_A 215 DDMAAASIHVMELAHEVWLE----NTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK-PDGTPRKLLDVTR 289 (321)
T ss_dssp HHHHHHHHHHHHSCHHHHHH----TSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTS-CCCCSBCCBCCHH
T ss_pred HHHHHHHHHHHhCccccccc----ccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCCC-CCCcccccCCHHH
Confidence 99999999999876431000 000123799999999999999999999999987765554432 3345567899999
Q ss_pred HHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 384 AQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 384 ~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
+++ |||+|+++++++|+++++|++++.+.
T Consensus 290 ~~~-lG~~p~~~~~~~l~~~~~~~~~~~~~ 318 (321)
T 1e6u_A 290 LHQ-LGWYHEISLEAGLASTYQWFLENQDR 318 (321)
T ss_dssp HHH-TTCCCCCCHHHHHHHHHHHHHHTC--
T ss_pred HHh-cCCccCCcHHHHHHHHHHHHHHHHHh
Confidence 999 99999999999999999999987653
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-43 Score=340.55 Aligned_cols=307 Identities=27% Similarity=0.407 Sum_probs=250.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+++|+||||||+||||++|+++|+++|++|++++|+........ .......++.++.+|+.|.. +. ++
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~D~~~~~-----~~--~~ 92 (343)
T 2b69_A 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNV----EHWIGHENFELINHDVVEPL-----YI--EV 92 (343)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGT----GGGTTCTTEEEEECCTTSCC-----CC--CC
T ss_pred ccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhh----hhhccCCceEEEeCccCChh-----hc--CC
Confidence 467899999999999999999999999999999999654322111 11112357899999999853 34 45
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC----CCCCCCChH
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKD----RTDQPASLY 231 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~----~~~~~~~~Y 231 (424)
|+|||+||.........+++..+++|+.|+.+++++|++.+. +||++||.++||.....+++|+. .+..+.+.|
T Consensus 93 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y 170 (343)
T 2b69_A 93 DQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACY 170 (343)
T ss_dssp SEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHH
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCch
Confidence 999999998765545667888999999999999999999874 89999999999976666777763 133567889
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--CCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHH
Q 042406 232 AATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP--DMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKG 309 (424)
Q Consensus 232 ~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 309 (424)
+.+|+++|.+++.++++.+++++++||+.||||+... ...+..++..++.+.++.++ ++++..++|+|++|+|++
T Consensus 171 ~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~v~Dva~a 247 (343)
T 2b69_A 171 DEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNG 247 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEE---SSSCCEEECEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEc---CCCCeEEeeEeHHHHHHH
Confidence 9999999999999988889999999999999997643 34566778888888888776 577889999999999999
Q ss_pred HHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcC
Q 042406 310 CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELG 389 (424)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG 389 (424)
++.+++.+. +++||+++++++|+.|+++.+.+.+|.+.++...|.. ..+......|++|++++||
T Consensus 248 ~~~~~~~~~--------------~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~-~~~~~~~~~d~~k~~~~lG 312 (343)
T 2b69_A 248 LVALMNSNV--------------SSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA-QDDPQKRKPDIKKAKLMLG 312 (343)
T ss_dssp HHHHHTSSC--------------CSCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC-TTCCCCCCBCCHHHHHHHC
T ss_pred HHHHHhcCC--------------CCeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCC-CCCCceecCCHHHHHHHcC
Confidence 999887542 1689999999999999999999999988766555432 2334456789999999999
Q ss_pred CcccCCHHHHHHHHHHHHHHHhcc
Q 042406 390 YMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 390 ~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
|+|.++++++|+++++|+++....
T Consensus 313 ~~p~~~l~e~l~~~~~~~~~~~~~ 336 (343)
T 2b69_A 313 WEPVVPLEEGLNKAIHYFRKELEY 336 (343)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987654
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=331.56 Aligned_cols=278 Identities=18% Similarity=0.208 Sum_probs=240.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||+||||++++++|+++|++|++++|. ++|++|.+++.+++++.++|+||
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------------~~D~~d~~~~~~~~~~~~~d~vi 61 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK------------------------LLDITNISQVQQVVQEIRPHIII 61 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT------------------------TSCTTCHHHHHHHHHHHCCSEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc------------------------ccCCCCHHHHHHHHHhcCCCEEE
Confidence 389999999999999999999999999999981 27999999999999976779999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|+||.........+++..+++|+.++.+++++|++.+. +|||+||.++|+.....+++|+++. .|.+.|+.+|.++|
T Consensus 62 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~SS~~vy~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 138 (287)
T 3sc6_A 62 HCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYISTDYVFQGDRPEGYDEFHNP-APINIYGASKYAGE 138 (287)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCCCCSSCBCTTSCC-CCCSHHHHHHHHHH
T ss_pred ECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEchhhhcCCCCCCCCCCCCCC-CCCCHHHHHHHHHH
Confidence 99999877766788899999999999999999999886 7999999999998877889998876 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
.+++.+ ..+++++||+.||||+.. .++..++..+..+.++.++ +++.++|+|++|+|++++.+++++.
T Consensus 139 ~~~~~~----~~~~~ilR~~~v~G~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~~~- 206 (287)
T 3sc6_A 139 QFVKEL----HNKYFIVRTSWLYGKYGN--NFVKTMIRLGKEREEISVV-----ADQIGSPTYVADLNVMINKLIHTSL- 206 (287)
T ss_dssp HHHHHH----CSSEEEEEECSEECSSSC--CHHHHHHHHHTTCSEEEEE-----CSCEECCEEHHHHHHHHHHHHTSCC-
T ss_pred HHHHHh----CCCcEEEeeeeecCCCCC--cHHHHHHHHHHcCCCeEee-----cCcccCceEHHHHHHHHHHHHhCCC-
Confidence 999887 447899999999999653 4566777777778888775 3478999999999999999998754
Q ss_pred cCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccC----CCCCCcccccCChHHHHhHcCCcccCC
Q 042406 320 STGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL----PRNGDVQFTHANISLAQRELGYMPTTD 395 (424)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~----~~~~~~~~~~~d~s~~~~~LG~~p~~~ 395 (424)
+++||+++++++|+.|+++.+.+.+|.+..+...+. ....+.....+|++|++ .|||.|.++
T Consensus 207 -------------~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~p~~~ 272 (287)
T 3sc6_A 207 -------------YGTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLR-LNGFLQMPS 272 (287)
T ss_dssp -------------CEEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHH-HTTCCCCCB
T ss_pred -------------CCeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHH-hhCCCCCcc
Confidence 179999999999999999999999998876654432 22344456789999999 899999999
Q ss_pred HHHHHHHHHHHHHHH
Q 042406 396 LETGLKKFVRWYLSY 410 (424)
Q Consensus 396 l~~~l~~~v~~~~~~ 410 (424)
++++|+++++|++++
T Consensus 273 ~~~~l~~~~~~~~~~ 287 (287)
T 3sc6_A 273 WEEGLERFFIETKSH 287 (287)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998653
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=340.46 Aligned_cols=315 Identities=23% Similarity=0.239 Sum_probs=249.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhh-HHHHHhhh-hccC-CeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETS-LKKARKGL-LERA-GVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~-~~~~-~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+||||||+||||++|++.|+++|++|++++|+.+..... ........ .... ++.++.+|++|.+++.++++++++|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 108 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 108 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence 6899999999999999999999999999999976531100 00000000 0112 7899999999999999999987789
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCC----CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ----PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYA 232 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~----~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~ 232 (424)
+||||||.........+++..+++|+.|+.+++++|++.+++ .+||++||.++||.... +++|+++. .|.+.|+
T Consensus 109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~~~~-~~~~~Y~ 186 (381)
T 1n7h_A 109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSETTPF-HPRSPYA 186 (381)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTTSCC-CCCSHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCCCCC-CCCCchH
Confidence 999999987665556678899999999999999999886532 39999999999997665 88888765 7789999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCc---HHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHH
Q 042406 233 ATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMA---YFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKG 309 (424)
Q Consensus 233 ~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 309 (424)
.+|+++|.+++.++.+++++++++|++++|||+...+.. +..++..+..+....+.. ++++..++|+|++|+|++
T Consensus 187 ~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~--g~~~~~~~~v~v~Dva~a 264 (381)
T 1n7h_A 187 ASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFL--GNLQASRDWGFAGDYVEA 264 (381)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEE--SCTTCEEECEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEe--CCCCceeeeEEHHHHHHH
Confidence 999999999999998889999999999999997654332 233455566665433221 567889999999999999
Q ss_pred HHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccc--cccccC-CCCCCcccccCChHHHHh
Q 042406 310 CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE--TKVLPL-PRNGDVQFTHANISLAQR 386 (424)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~--~~~~~~-~~~~~~~~~~~d~s~~~~ 386 (424)
++.+++.+.. ++||+++++++|+.|+++.+.+.+|.+.. ....+. .++.+.....+|++|+++
T Consensus 265 ~~~~~~~~~~--------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 330 (381)
T 1n7h_A 265 MWLMLQQEKP--------------DDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAKE 330 (381)
T ss_dssp HHHHHTSSSC--------------CEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHHH
T ss_pred HHHHHhCCCC--------------CeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHHH
Confidence 9999976431 69999999999999999999999997642 111111 123344556789999999
Q ss_pred HcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 387 ELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 387 ~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
.|||+|+++++++|+++++||++...
T Consensus 331 ~lG~~p~~~l~e~l~~~~~~~~~~~~ 356 (381)
T 1n7h_A 331 VLGWKPQVGFEKLVKMMVDEDLELAK 356 (381)
T ss_dssp HHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhcc
Confidence 99999988999999999999988654
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-43 Score=335.51 Aligned_cols=298 Identities=20% Similarity=0.311 Sum_probs=238.6
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh
Q 042406 72 TRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 72 ~~~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
..+..+++|+||||||+||||++|+++|+++|++|++++|+....... ... ..++.++.+|++|.+++.++++
T Consensus 13 ~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----~~~--l~~v~~~~~Dl~d~~~~~~~~~ 85 (330)
T 2pzm_A 13 GLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREV-----LPP--VAGLSVIEGSVTDAGLLERAFD 85 (330)
T ss_dssp -CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGG-----SCS--CTTEEEEECCTTCHHHHHHHHH
T ss_pred CCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhh-----hhc--cCCceEEEeeCCCHHHHHHHHh
Confidence 345668899999999999999999999999999999999965432110 011 1478999999999999999998
Q ss_pred ccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC--CCCCCCCCCCCCC
Q 042406 152 VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKV--PFSEKDRTDQPAS 229 (424)
Q Consensus 152 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~--~~~e~~~~~~~~~ 229 (424)
..++|+||||||..... ...+++ +++|+.++.+++++|.+.+++ +||++||.++|+..... +++|++ .+.+
T Consensus 86 ~~~~D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~-~iV~~SS~~~~~~~~~~~~~~~E~~---~~~~ 158 (330)
T 2pzm_A 86 SFKPTHVVHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVK-RLLNFQTALCYGRPATVPIPIDSPT---APFT 158 (330)
T ss_dssp HHCCSEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCS-EEEEEEEGGGGCSCSSSSBCTTCCC---CCCS
T ss_pred hcCCCEEEECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCccCCCCcCCCC---CCCC
Confidence 54559999999986542 222333 899999999999999988865 99999999999865443 677765 5678
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHH-
Q 042406 230 LYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVK- 308 (424)
Q Consensus 230 ~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~- 308 (424)
.|+.+|+++|.+++.+ ++++++|||+++|||+. ...++..++..+..+. .++ +++. .++++|++|+|+
T Consensus 159 ~Y~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~-~~~~~~~~~~~~~~~~--~~~---~~~~-~~~~i~~~Dva~~ 227 (330)
T 2pzm_A 159 SYGISKTAGEAFLMMS----DVPVVSLRLANVTGPRL-AIGPIPTFYKRLKAGQ--KCF---CSDT-VRDFLDMSDFLAI 227 (330)
T ss_dssp HHHHHHHHHHHHHHTC----SSCEEEEEECEEECTTC-CSSHHHHHHHHHHTTC--CCC---EESC-EECEEEHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc----CCCEEEEeeeeeECcCC-CCCHHHHHHHHHHcCC--EEe---CCCC-EecceeHHHHHHH
Confidence 9999999999998876 89999999999999986 3445566677777665 222 3445 789999999999
Q ss_pred HHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHH----
Q 042406 309 GCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLA---- 384 (424)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~---- 384 (424)
+++.+++.+. +++||+++++++|+.|+++.+.+.+|.+ .+...+... +.....+|++|+
T Consensus 228 a~~~~~~~~~--------------g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~--~~~~~~~d~~k~~~~~ 290 (330)
T 2pzm_A 228 ADLSLQEGRP--------------TGVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVVA--PGADDVPSVVLDPSKT 290 (330)
T ss_dssp HHHHTSTTCC--------------CEEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEEC--CCTTSCSEECBCCHHH
T ss_pred HHHHHhhcCC--------------CCEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCCc--chhhccCCHHHHhhch
Confidence 9999887632 2899999999999999999999999987 444433221 445567888888
Q ss_pred -HhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 385 -QRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 385 -~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
++ |||+|.++++++|+++++|++++..
T Consensus 291 l~~-lG~~p~~~~~~~l~~~~~~~~~~~~ 318 (330)
T 2pzm_A 291 ETE-FGWKAKVDFKDTITGQLAWYDKYGV 318 (330)
T ss_dssp HHH-HCCCCCCCHHHHHHHHHHHHHHHCS
T ss_pred HHH-cCCcccCCHHHHHHHHHHHHHhhCc
Confidence 77 9999998999999999999987643
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=332.45 Aligned_cols=292 Identities=16% Similarity=0.155 Sum_probs=232.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.+|+||||||+||||++|+++|+++|++|++++|+.+.... +...+++++.+|++|.+++.++++++ |+
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------l~~~~~~~~~~Dl~d~~~~~~~~~~~--d~ 80 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR---------LAYLEPECRVAEMLDHAGLERALRGL--DG 80 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG---------GGGGCCEEEECCTTCHHHHHHHTTTC--SE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh---------hccCCeEEEEecCCCHHHHHHHHcCC--CE
Confidence 45799999999999999999999999999999997653221 11237899999999999999999965 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC--CCCCCCCCCCCC----CChH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKK--VPFSEKDRTDQP----ASLY 231 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~--~~~~e~~~~~~~----~~~Y 231 (424)
|||+||... ....+++..+++|+.++.+++++|++.+++ +||++||.++|+.... .+ +|+++. .| .+.|
T Consensus 81 vih~a~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~-~E~~~~-~p~~~~~~~Y 155 (342)
T 2x4g_A 81 VIFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVP-RILYVGSAYAMPRHPQGLPG-HEGLFY-DSLPSGKSSY 155 (342)
T ss_dssp EEEC--------------CHHHHHHHHHHHHHHHHHHHTCS-CEEEECCGGGSCCCTTSSCB-CTTCCC-SSCCTTSCHH
T ss_pred EEECCccCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHhhCcCCCCCCC-CCCCCC-CccccccChH
Confidence 999999754 234566789999999999999999998875 9999999999986544 34 666655 66 7899
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC-CCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHH
Q 042406 232 AATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWG-RPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310 (424)
Q Consensus 232 ~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 310 (424)
+.+|+++|.+++.+++. |+++++|||+.||||+. ... +..++..+..+....+ ++..++|+|++|+|+++
T Consensus 156 ~~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~i~v~Dva~~~ 226 (342)
T 2x4g_A 156 VLCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPT--TGRVITAIGNGEMTHY------VAGQRNVIDAAEAGRGL 226 (342)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCS--TTHHHHHHHTTCCCEE------ECCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCcccc--HHHHHHHHHcCCCccc------cCCCcceeeHHHHHHHH
Confidence 99999999999999877 99999999999999976 322 4456777777776544 35678999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCC----------------C----
Q 042406 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP----------------R---- 370 (424)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~----------------~---- 370 (424)
+.+++.+.. +++||+++++ +|+.|+++.+.+.+|.+... ..|.. .
T Consensus 227 ~~~~~~~~~-------------g~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ 291 (342)
T 2x4g_A 227 LMALERGRI-------------GERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSGQLPL 291 (342)
T ss_dssp HHHHHHSCT-------------TCEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC----------
T ss_pred HHHHhCCCC-------------CceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999987542 2799999999 99999999999999987654 33211 0
Q ss_pred -CCC-----cccccCChHHHHhHcCC-cccCCHHHHHHHHHHHHHHH
Q 042406 371 -NGD-----VQFTHANISLAQRELGY-MPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 371 -~~~-----~~~~~~d~s~~~~~LG~-~p~~~l~~~l~~~v~~~~~~ 410 (424)
..+ .....+|++|+++.||| +| ++++++|+++++|++++
T Consensus 292 ~~~~~~~~~~~~~~~d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~ 337 (342)
T 2x4g_A 292 LDETAIEVMAGGQFLDGRKAREELGFFST-TALDDTLLRAIDWFRDN 337 (342)
T ss_dssp ------CCTTCCCCBCCHHHHHHHCCCCC-SCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhcCcccChHHHHHhCCCCCC-CCHHHHHHHHHHHHHHc
Confidence 001 23467899999999999 99 79999999999999875
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=330.41 Aligned_cols=301 Identities=19% Similarity=0.276 Sum_probs=236.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC--CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKR--GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+|+||||||+||||++|+++|+++ |++|++++|+..... . ..+++++.+|++|.+++.+++++.++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~------~~~~~~~~~D~~d~~~~~~~~~~~~~d 70 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-----V------VNSGPFEVVNALDFNQIEHLVEVHKIT 70 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-----H------HHSSCEEECCTTCHHHHHHHHHHTTCC
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-----c------cCCCceEEecCCCHHHHHHHHhhcCCC
Confidence 478999999999999999999999 899999999765311 0 125778999999999999999866679
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC-CCCCCCCCCCCCCChHHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKK-VPFSEKDRTDQPASLYAATK 235 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~-~~~~e~~~~~~~~~~Y~~sK 235 (424)
+|||+||.... ....+++..+++|+.++.+++++|++.+++ +||++||.++|+.... .+.+|+.+. .|.+.|+.+|
T Consensus 71 ~vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~-~~~~~Y~~sK 147 (312)
T 2yy7_A 71 DIYLMAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIAVFGPTTPKENTPQYTIM-EPSTVYGISK 147 (312)
T ss_dssp EEEECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGGGCCTTSCSSSBCSSCBC-CCCSHHHHHH
T ss_pred EEEECCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHHhCCCCCCCCccccCcC-CCCchhHHHH
Confidence 99999997543 234677889999999999999999998875 9999999999987443 455565544 7789999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-----CcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHH
Q 042406 236 KAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD-----MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310 (424)
Q Consensus 236 ~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 310 (424)
+++|.+++.+++++|++++++||+.+|||+..+. .....+.. .+.++++..+ ++++..++|+|++|+|+++
T Consensus 148 ~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~ 223 (312)
T 2yy7_A 148 QAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFYK-AIADKKYECF---LSSETKMPMMYMDDAIDAT 223 (312)
T ss_dssp HHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHHH-HHHTSEEEES---SCTTCCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHHH-HHcCCCeEEe---cCCCceeeeeeHHHHHHHH
Confidence 9999999999888899999999999999764322 13333433 3445555544 5678899999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCC--CCcccccCChHHHHhHc
Q 042406 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN--GDVQFTHANISLAQREL 388 (424)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~--~~~~~~~~d~s~~~~~L 388 (424)
+.+++.+.... ..+++||+++ +.+|+.|+++.+.+.+|. ..+...+..+. .......+|++|++++|
T Consensus 224 ~~~~~~~~~~~---------~~~~~~ni~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~l 292 (312)
T 2yy7_A 224 INIMKAPVEKI---------KIHSSYNLAA-MSFTPTEIANEIKKHIPE-FTITYEPDFRQKIADSWPASIDDSQAREDW 292 (312)
T ss_dssp HHHHHSCGGGC---------CCSSCEECCS-EEECHHHHHHHHHTTCTT-CEEEECCCTHHHHHTTSCSSBCCHHHHHHH
T ss_pred HHHHhCccccc---------ccCceEEeCC-CccCHHHHHHHHHHHCCC-CceEeccCccccccccccccCCHHHHHHHc
Confidence 99998764310 0127999996 789999999999999983 22222221100 01112468999999999
Q ss_pred CCcccCCHHHHHHHHHHHHH
Q 042406 389 GYMPTTDLETGLKKFVRWYL 408 (424)
Q Consensus 389 G~~p~~~l~~~l~~~v~~~~ 408 (424)
||+|+++++++|+++++||+
T Consensus 293 G~~p~~~l~~~l~~~~~~~k 312 (312)
T 2yy7_A 293 DWKHTFDLESMTKDMIEHLS 312 (312)
T ss_dssp CCCCCCCHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999974
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=327.15 Aligned_cols=286 Identities=16% Similarity=0.157 Sum_probs=238.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||+||||++|+++|+ +|++|++++|+. .++.+|++|.+++.+++++.++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~--------------------~~~~~D~~d~~~~~~~~~~~~~d~vi 59 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHS--------------------KEFCGDFSNPKGVAETVRKLRPDVIV 59 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTC--------------------SSSCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEecccc--------------------ccccccCCCHHHHHHHHHhcCCCEEE
Confidence 689999999999999999999 899999999843 13568999999999999985679999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|+||.........+++..+++|+.++.+++++|++.++ +|||+||.++|+.....+++|+++. .|.+.|+.+|+++|
T Consensus 60 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~vy~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 136 (299)
T 1n2s_A 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYSTDYVFPGTGDIPWQETDAT-SPLNVYGKTKLAGE 136 (299)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEEEGGGSCCCTTCCBCTTSCC-CCSSHHHHHHHHHH
T ss_pred ECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEecccEEeCCCCCCCCCCCCC-CCccHHHHHHHHHH
Confidence 99998766556678889999999999999999998875 7999999999998777788888766 77899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
.+++.+. .+++++||+++|||+.. .++..++..+..+.++.++ +++.++|+|++|+|++++.+++.+..
T Consensus 137 ~~~~~~~----~~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~~~~ 205 (299)
T 1n2s_A 137 KALQDNC----PKHLIFRTSWVYAGKGN--NFAKTMLRLAKERQTLSVI-----NDQYGAPTGAELLADCTAHAIRVALN 205 (299)
T ss_dssp HHHHHHC----SSEEEEEECSEECSSSC--CHHHHHHHHHHHCSEEEEE-----CSCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC----CCeEEEeeeeecCCCcC--cHHHHHHHHHhcCCCEEee-----cCcccCCeeHHHHHHHHHHHHHHhcc
Confidence 9998873 48999999999999754 4566777888888877765 24789999999999999999987631
Q ss_pred cCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccc------ccccccCC----CCCCcccccCChHHHHhHcC
Q 042406 320 STGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKA------ETKVLPLP----RNGDVQFTHANISLAQRELG 389 (424)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~------~~~~~~~~----~~~~~~~~~~d~s~~~~~LG 389 (424)
.. ..+++||+++++++|+.|+++.+.+.+|.+. .+...+.. .........+|++|++++||
T Consensus 206 ~~---------~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 276 (299)
T 1n2s_A 206 KP---------EVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFD 276 (299)
T ss_dssp CG---------GGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHT
T ss_pred cc---------ccCceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHHhcC
Confidence 10 0128999999999999999999999999762 22222211 11233456799999999999
Q ss_pred CcccCCHHHHHHHHHHHHHHH
Q 042406 390 YMPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 390 ~~p~~~l~~~l~~~v~~~~~~ 410 (424)
|+|+ +++++|+++++|+++.
T Consensus 277 ~~p~-~~~~~l~~~~~~~~~~ 296 (299)
T 1n2s_A 277 LILP-QWELGVKRMLTEMFTT 296 (299)
T ss_dssp CCCC-BHHHHHHHHHHHHHSC
T ss_pred CCCC-CHHHHHHHHHHHHHhc
Confidence 9998 8999999999999764
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=335.58 Aligned_cols=301 Identities=22% Similarity=0.372 Sum_probs=243.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.+++|+||||||+||||++|+++|+++| ++|++++|+...... ... .++. +.+|++|.+.+++++++.
T Consensus 43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-------~~~--~~~~-~~~d~~~~~~~~~~~~~~~ 112 (357)
T 2x6t_A 43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-------VNL--VDLN-IADYMDKEDFLIQIMAGEE 112 (357)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGG-------GGT--TTSC-CSEEEEHHHHHHHHHTTCC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchh-------hcc--cCce-EeeecCcHHHHHHHHhhcc
Confidence 4567899999999999999999999999 999999997643210 001 1233 678999999999998752
Q ss_pred --CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChH
Q 042406 154 --AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLY 231 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y 231 (424)
++|+|||+||.... ...+++..+++|+.|+.+++++|++.++ +||++||.++||.....+++|+++. .|.+.|
T Consensus 113 ~~~~d~Vih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y 187 (357)
T 2x6t_A 113 FGDVEAIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREYE-KPLNVF 187 (357)
T ss_dssp CSSCCEEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGCSCSSCCCSSGGGC-CCSSHH
T ss_pred cCCCCEEEECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcchHHhCCCCCCCcCCcCCC-CCCChh
Confidence 46999999998653 3567788999999999999999999876 8999999999998766678887755 778999
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CCcHHHHHHHHHcCCceeEEecCCCCcc-ccccccHHHH
Q 042406 232 AATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP----DMAYFFFTRDIIRGKRITVYEAPDGASV-ARDFTYIDDI 306 (424)
Q Consensus 232 ~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~Dv 306 (424)
+.+|+++|.+++.++.++|+++++|||++||||+... ...+..++..+..+..+.++ ++++. .++|+|++|+
T Consensus 188 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~v~Dv 264 (357)
T 2x6t_A 188 GYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF---EGSENFKRDFVYVGDV 264 (357)
T ss_dssp HHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEE---TTGGGCEECEEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEe---CCCCcceEccEEHHHH
Confidence 9999999999999988889999999999999997653 34566778888888887776 56778 8999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCC---CCcccccCChHH
Q 042406 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN---GDVQFTHANISL 383 (424)
Q Consensus 307 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~~d~s~ 383 (424)
|++++.+++.+. +++||+++++++|+.|+++.+.+.+|.+ .+...+.+.. ........|++|
T Consensus 265 a~ai~~~~~~~~--------------~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~k 329 (357)
T 2x6t_A 265 ADVNLWFLENGV--------------SGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTN 329 (357)
T ss_dssp HHHHHHHHHHCC--------------CEEEEESCSCCEEHHHHHHHHHHHHTCC-CCEEECCCGGGTTSCCSBCCCCCHH
T ss_pred HHHHHHHHhcCC--------------CCeEEecCCCcccHHHHHHHHHHHcCCC-CceecCCCcccccccccccccCHHH
Confidence 999999998754 1799999999999999999999999987 3333333321 112345688999
Q ss_pred HHhHcCC-cccCCHHHHHHHHHHHHHHH
Q 042406 384 AQRELGY-MPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 384 ~~~~LG~-~p~~~l~~~l~~~v~~~~~~ 410 (424)
+++ ||| .|.++++++|+++++|+++.
T Consensus 330 ~~~-lG~~~~~~~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 330 LRA-AGYDKPFKTVAEGVTEYMAWLNRD 356 (357)
T ss_dssp HHH-TTCCCCCCCHHHHHHHHHHHHC--
T ss_pred HHH-cCCCCCCCCHHHHHHHHHHHHhhc
Confidence 976 999 78889999999999999753
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-42 Score=330.33 Aligned_cols=295 Identities=21% Similarity=0.319 Sum_probs=234.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
....++|+||||||+||||++|+++|+++|++|++++|+........ . ...++.++.+|++|.+++.+++++.
T Consensus 16 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l-----~--~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (333)
T 2q1w_A 16 PRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHL-----K--DHPNLTFVEGSIADHALVNQLIGDL 88 (333)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGS-----C--CCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred eecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhH-----h--hcCCceEEEEeCCCHHHHHHHHhcc
Confidence 34567899999999999999999999999999999999754221110 0 1147899999999999999999884
Q ss_pred CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC----CCCCCCCCCCCCCCCCC-
Q 042406 154 AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG----VNKKVPFSEKDRTDQPA- 228 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg----~~~~~~~~e~~~~~~~~- 228 (424)
++|+||||||..... ...+++ +++|+.++.+++++|.+.+++ +||++||.++|+ .... +++|++ .|.
T Consensus 89 ~~D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~-~iV~~SS~~~~g~~~~~~~~-~~~E~~---~p~~ 160 (333)
T 2q1w_A 89 QPDAVVHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVG-RFVYFQTALCYGVKPIQQPV-RLDHPR---NPAN 160 (333)
T ss_dssp CCSEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGCSCCCSSSB-CTTSCC---CCTT
T ss_pred CCcEEEECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCC-EEEEECcHHHhCCCcccCCC-CcCCCC---CCCC
Confidence 569999999986543 222333 999999999999999998875 999999999998 5444 677766 456
Q ss_pred ChHHHHHHHHHHHHHH-HHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHH
Q 042406 229 SLYAATKKAGEAIAHA-YNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIV 307 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~-~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 307 (424)
+.|+.+|+++|.+++. +. +++++||+++|||+. ...+++.++..+..+. .++ + ++..++++|++|+|
T Consensus 161 ~~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~-~~~~~~~~~~~~~~~~--~~~---~-~~~~~~~i~v~Dva 228 (333)
T 2q1w_A 161 SSYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRN-VSGPLPIFFQRLSEGK--KCF---V-TKARRDFVFVKDLA 228 (333)
T ss_dssp CHHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTC-CSSHHHHHHHHHHTTC--CCE---E-EECEECEEEHHHHH
T ss_pred CchHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCC-cCcHHHHHHHHHHcCC--eee---C-CCceEeeEEHHHHH
Confidence 8999999999999988 64 789999999999983 3455666777777776 333 3 56788999999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCC---CCcccccCChHHH
Q 042406 308 KGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN---GDVQFTHANISLA 384 (424)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~~d~s~~ 384 (424)
++++.+++.+. +++||+++++.+|+.|+++.+.+.+|.+ .+...+.+.. .......+|++|+
T Consensus 229 ~ai~~~~~~~~--------------g~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~~k~ 293 (333)
T 2q1w_A 229 RATVRAVDGVG--------------HGAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRELGPDDAPSILLDPSRTI 293 (333)
T ss_dssp HHHHHHHTTCC--------------CEEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEECCTTSCCCCCBCCHHHH
T ss_pred HHHHHHHhcCC--------------CCEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCCcccccccccccCCHHHH
Confidence 99999987643 2899999999999999999999999987 4443332210 1114567899999
Q ss_pred HhHcCCcccCCHHHHHHHHHHHHHHHh
Q 042406 385 QRELGYMPTTDLETGLKKFVRWYLSYY 411 (424)
Q Consensus 385 ~~~LG~~p~~~l~~~l~~~v~~~~~~~ 411 (424)
++. ||+|.++++++|+++++|++++.
T Consensus 294 ~~~-G~~p~~~~~~~l~~~~~~~~~~~ 319 (333)
T 2q1w_A 294 QDF-GKIEFTPLKETVAAAVAYFREYG 319 (333)
T ss_dssp HHH-CCCCCCCHHHHHHHHHHHHHHHC
T ss_pred Hhc-CCCcCCCHHHHHHHHHHHHHHHC
Confidence 998 99999999999999999998764
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-42 Score=322.71 Aligned_cols=278 Identities=19% Similarity=0.193 Sum_probs=234.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.-|+||||||+||||++|+++|+++|++|++++|+ .+|++|.+++.+++++.++|+
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------------~~Dl~d~~~~~~~~~~~~~d~ 66 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ------------------------DLDITNVLAVNKFFNEKKPNV 66 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT------------------------TCCTTCHHHHHHHHHHHCCSE
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc------------------------cCCCCCHHHHHHHHHhcCCCE
Confidence 45789999999999999999999999999999983 279999999999998656699
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKA 237 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~ 237 (424)
||||||.........+++..+++|+.|+.+++++|++.+. +||++||.++|+.....+++|+++. .|.+.|+.+|++
T Consensus 67 vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~SS~~v~~~~~~~~~~E~~~~-~~~~~Y~~sK~~ 143 (292)
T 1vl0_A 67 VINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQISTDYVFDGEAKEPITEFDEV-NPQSAYGKTKLE 143 (292)
T ss_dssp EEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCSCCSSCBCTTSCC-CCCSHHHHHHHH
T ss_pred EEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEechHHeECCCCCCCCCCCCCC-CCccHHHHHHHH
Confidence 9999998765555677889999999999999999999875 8999999999998766788888766 778999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 238 ~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
+|.+++.+ +.+++++||+.|||| . ..++..++..+..+.++.++ ++..++|+|++|+|++++.+++.+
T Consensus 144 ~E~~~~~~----~~~~~~lR~~~v~G~-~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~~ 211 (292)
T 1vl0_A 144 GENFVKAL----NPKYYIVRTAWLYGD-G--NNFVKTMINLGKTHDELKVV-----HDQVGTPTSTVDLARVVLKVIDEK 211 (292)
T ss_dssp HHHHHHHH----CSSEEEEEECSEESS-S--SCHHHHHHHHHHHCSEEEEE-----SSCEECCEEHHHHHHHHHHHHHHT
T ss_pred HHHHHHhh----CCCeEEEeeeeeeCC-C--cChHHHHHHHHhcCCcEEee-----cCeeeCCccHHHHHHHHHHHHhcC
Confidence 99999887 457899999999999 3 24566677777778777664 247889999999999999999875
Q ss_pred cccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCC----CCCCcccccCChHHHHhHcCCccc
Q 042406 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP----RNGDVQFTHANISLAQRELGYMPT 393 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~----~~~~~~~~~~d~s~~~~~LG~~p~ 393 (424)
. + ++||+++++++|+.|+++.+.+.+|.+......+.. .........+|++|+++.|||+|+
T Consensus 212 -~--~-----------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 277 (292)
T 1vl0_A 212 -N--Y-----------GTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR 277 (292)
T ss_dssp -C--C-----------EEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC
T ss_pred -C--C-----------cEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCCCC
Confidence 1 1 799999999999999999999999987655443321 122344577999999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 042406 394 TDLETGLKKFVRWYLS 409 (424)
Q Consensus 394 ~~l~~~l~~~v~~~~~ 409 (424)
+++++|+++++||++
T Consensus 278 -~~~~~l~~~~~~~~~ 292 (292)
T 1vl0_A 278 -EWKESLKEYIDLLQM 292 (292)
T ss_dssp -BHHHHHHHHHHHHTC
T ss_pred -CHHHHHHHHHHHhcC
Confidence 999999999999863
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=327.01 Aligned_cols=296 Identities=22% Similarity=0.376 Sum_probs=223.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---Ccc
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---AFT 156 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---~~d 156 (424)
+||||||+||||++|+++|+++| ++|++++|..+.... ... .++. +.+|++|.+.+.+++++. ++|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~~-------~~~~-~~~d~~~~~~~~~~~~~~~~~~~d 70 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF--VNL-------VDLN-IADYMDKEDFLIQIMAGEEFGDVE 70 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGG--HHH-------HTSC-CSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchh--hhc-------Ccce-eccccccHHHHHHHHhccccCCCc
Confidence 48999999999999999999999 999999997653211 101 1222 678999999999998852 469
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKK 236 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~ 236 (424)
+|||+||.... ...+++..+++|+.++.+++++|++.++ +||++||.++||.....+++|+++. .|.+.|+.+|+
T Consensus 71 ~vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~~sK~ 145 (310)
T 1eq2_A 71 AIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKF 145 (310)
T ss_dssp EEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGTTCCSCBCSSGGGC-CCSSHHHHHHH
T ss_pred EEEECcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeeHHHhCCCCCCCCCCCCCC-CCCChhHHHHH
Confidence 99999998653 4567788999999999999999999886 8999999999997766677787755 77899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCC----CCcHHHHHHHHHcCCceeEEecCCCCcc-ccccccHHHHHHHHH
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP----DMAYFFFTRDIIRGKRITVYEAPDGASV-ARDFTYIDDIVKGCL 311 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~v~Dva~a~~ 311 (424)
++|.+++.+++++|++++++||+.||||+... ..++..++..+..+.++.++ ++++. .++|+|++|+|++++
T Consensus 146 ~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~i~v~Dva~~~~ 222 (310)
T 1eq2_A 146 LFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF---EGSENFKRDFVYVGDVADVNL 222 (310)
T ss_dssp HHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC----------------CBCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEe---cCCCcceEccEEHHHHHHHHH
Confidence 99999999988889999999999999997642 34566788888888877665 56778 899999999999999
Q ss_pred HHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCC---CCcccccCChHHHHhHc
Q 042406 312 AGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN---GDVQFTHANISLAQREL 388 (424)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~---~~~~~~~~d~s~~~~~L 388 (424)
.+++.+. +++||+++++++|+.|+++.+.+.+|.+ .....+.+.. ........|++++++ |
T Consensus 223 ~~~~~~~--------------~~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 286 (310)
T 1eq2_A 223 WFLENGV--------------SGIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA-A 286 (310)
T ss_dssp HHHHHCC--------------CEEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHH-T
T ss_pred HHHhcCC--------------CCeEEEeCCCccCHHHHHHHHHHHcCCC-CceeCCCChhhhcccccccccchHHHHh-c
Confidence 9998753 1799999999999999999999999987 3333333321 122345678899976 9
Q ss_pred CC-cccCCHHHHHHHHHHHHHHH
Q 042406 389 GY-MPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 389 G~-~p~~~l~~~l~~~v~~~~~~ 410 (424)
|| .|.++++++|+++++||+++
T Consensus 287 G~~~~~~~l~~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 287 GYDKPFKTVAEGVTEYMAWLNRD 309 (310)
T ss_dssp TCCCCCCCHHHHHHHHHHHTC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 99 78889999999999998754
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=325.30 Aligned_cols=280 Identities=19% Similarity=0.179 Sum_probs=229.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++|+||||| +||||++|+++|+++|++|++++|+.+. ...+++++.+|++|.+++.+++++ ++|+
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~-------------~~~~~~~~~~Dl~d~~~~~~~~~~-~~d~ 66 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQP-------------MPAGVQTLIADVTRPDTLASIVHL-RPEI 66 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSC-------------CCTTCCEEECCTTCGGGCTTGGGG-CCSE
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCccc-------------cccCCceEEccCCChHHHHHhhcC-CCCE
Confidence 468999999 5999999999999999999999996543 125789999999999999999986 4699
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKA 237 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~ 237 (424)
|||+||.. ..+++..+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.+|++
T Consensus 67 vih~a~~~-----~~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~~ 139 (286)
T 3gpi_A 67 LVYCVAAS-----EYSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVSSTGVYGQEVEEWLDEDTPP-IAKDFSGKRMLE 139 (286)
T ss_dssp EEECHHHH-----HHC-----CCSHHHHHHHHHHTTTSCCC-EEEEEEEGGGCCCCCSSEECTTSCC-CCCSHHHHHHHH
T ss_pred EEEeCCCC-----CCCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEcccEEEcCCCCCCCCCCCCC-CCCChhhHHHHH
Confidence 99999863 2456788899999999999999988875 9999999999998877788888866 788999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 238 ~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
+|.+ ... ++++++||++||||+.. .++..+.. ... .+.++..++|+|++|+|++++.+++.+
T Consensus 140 ~E~~-~~~-----~~~~ilR~~~v~G~~~~------~~~~~~~~-~~~-----~~~~~~~~~~i~v~Dva~~~~~~~~~~ 201 (286)
T 3gpi_A 140 AEAL-LAA-----YSSTILRFSGIYGPGRL------RMIRQAQT-PEQ-----WPARNAWTNRIHRDDGAAFIAYLIQQR 201 (286)
T ss_dssp HHHH-GGG-----SSEEEEEECEEEBTTBC------HHHHHTTC-GGG-----SCSSBCEECEEEHHHHHHHHHHHHHHH
T ss_pred HHHH-Hhc-----CCeEEEecccccCCCch------hHHHHHHh-ccc-----CCCcCceeEEEEHHHHHHHHHHHHhhh
Confidence 9998 543 89999999999999764 35555555 222 156788999999999999999999885
Q ss_pred cccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCcccC-CH
Q 042406 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTT-DL 396 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p~~-~l 396 (424)
... ..+++||+++++++|+.|+++.+.+.+|.+.+....+ .......+|++|++ +|||+|++ ++
T Consensus 202 ~~~----------~~~~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~----~~~~~~~~d~~k~~-~lG~~p~~~~l 266 (286)
T 3gpi_A 202 SHA----------VPERLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP----PVQGNKKLSNARLL-ASGYQLIYPDY 266 (286)
T ss_dssp TTS----------CCCSEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC----CBCSSCEECCHHHH-HTTCCCSSCSH
T ss_pred ccC----------CCCceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc----ccCCCeEeeHHHHH-HcCCCCcCCcH
Confidence 311 2238999999999999999999999999887655432 34456678999998 89999998 69
Q ss_pred HHHHHHHHHHHHHHhc
Q 042406 397 ETGLKKFVRWYLSYYN 412 (424)
Q Consensus 397 ~~~l~~~v~~~~~~~~ 412 (424)
+++|+++++|+....+
T Consensus 267 ~e~l~~~~~~~~~~~~ 282 (286)
T 3gpi_A 267 VSGYGALLAAMREGHH 282 (286)
T ss_dssp HHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999976544
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=350.97 Aligned_cols=311 Identities=23% Similarity=0.345 Sum_probs=253.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH-HHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL-LDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-v~~~~~~~~ 154 (424)
.++|+||||||+||||++|+++|+++ |++|++++|+.+.... .....+++++.+|++|.++ +.++++++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~--------~~~~~~v~~v~~Dl~d~~~~~~~~~~~~- 383 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR--------FLNHPHFHFVEGDISIHSEWIEYHVKKC- 383 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGG--------GTTCTTEEEEECCTTTCHHHHHHHHHHC-
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhh--------hccCCceEEEECCCCCcHHHHHHhhcCC-
Confidence 46789999999999999999999998 8999999997643211 1123578999999999765 78888866
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC------CCCC
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT------DQPA 228 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~------~~~~ 228 (424)
|+||||||.........+++..+++|+.|+.+++++|++.+ + +||++||.++||.....+++|+++. ..|.
T Consensus 384 -D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~-r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~ 460 (660)
T 1z7e_A 384 -DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPR 460 (660)
T ss_dssp -SEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-C-EEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTT
T ss_pred -CEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-C-EEEEEecHHHcCCCCCcccCCCccccccCcccCCC
Confidence 99999999876554556778899999999999999999987 4 9999999999997766677777642 1455
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--------CCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 229 SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP--------DMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
+.|+.||+++|.+++.++++.|++++++||++||||+... ..++..++..+..+.++.++ +++++.++|
T Consensus 461 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~g~~~~~~ 537 (660)
T 1z7e_A 461 WIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCF 537 (660)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEE---GGGCCEEEC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEe---CCCCeEEEE
Confidence 6899999999999999988889999999999999997642 34567788888889888776 567889999
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC-cccHHHHHHHHHHHhCcccccccccCCC---------
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT-PVPVSRLVSLLEKILKVKAETKVLPLPR--------- 370 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~s~~el~~~i~~~~g~~~~~~~~~~~~--------- 370 (424)
+|++|+|++++.+++.+... ..+++||+++++ ++|+.|+++.+.+.+|.+......|...
T Consensus 538 i~v~Dva~ai~~~l~~~~~~----------~~g~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~ 607 (660)
T 1z7e_A 538 TDIRDGIEALYRIIENAGNR----------CDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSS 607 (660)
T ss_dssp EEHHHHHHHHHHHHHCGGGT----------TTTEEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTHH
T ss_pred EEHHHHHHHHHHHHhCcccc----------CCCeEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhccc
Confidence 99999999999999865421 123899999986 8999999999999998754332222110
Q ss_pred -----CCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 371 -----NGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 371 -----~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
..+.....+|++|++++|||+|+++++++|+++++||+++..
T Consensus 608 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~~ 654 (660)
T 1z7e_A 608 YYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 654 (660)
T ss_dssp HHCTTCCCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTSC
T ss_pred cccccccchhhcccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhcc
Confidence 122345678999999999999999999999999999988754
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-41 Score=353.11 Aligned_cols=326 Identities=26% Similarity=0.364 Sum_probs=247.0
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..+++|+||||||+||||++|+++|+++|++|++++|............. .....++.++.+|++|.+++.+++++.+
T Consensus 7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~--~~~~~~v~~v~~Dl~d~~~l~~~~~~~~ 84 (699)
T 1z45_A 7 SESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLE--VLTKHHIPFYEVDLCDRKGLEKVFKEYK 84 (699)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHH--HHHTSCCCEEECCTTCHHHHHHHHHHSC
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHh--hccCCceEEEEcCCCCHHHHHHHHHhCC
Confidence 34678999999999999999999999999999999997654322222111 1123578899999999999999998656
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC----CCCCCCCCCCCCCCCh
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNK----KVPFSEKDRTDQPASL 230 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~----~~~~~e~~~~~~~~~~ 230 (424)
+|+||||||.........+++..+++|+.++.+++++|++.+++ +||++||.++||... ..+++|+++. .|.+.
T Consensus 85 ~D~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~SS~~vyg~~~~~~~~~~~~E~~~~-~p~~~ 162 (699)
T 1z45_A 85 IDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNP 162 (699)
T ss_dssp CCEEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCCGGGSTTCCSBCTTSCC-CCCSH
T ss_pred CCEEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECcHHHhCCCccccccCCccccCCC-CCCCh
Confidence 69999999987654445667789999999999999999998875 999999999998642 2466676654 67899
Q ss_pred HHHHHHHHHHHHHHHHHH--hCCcEEEEEeccccCCCCC----------CCCcHHHHHHHHHcC--CceeEEec---CCC
Q 042406 231 YAATKKAGEAIAHAYNHI--YGLSITGLRFFTVYGPWGR----------PDMAYFFFTRDIIRG--KRITVYEA---PDG 293 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~--~~i~~~~vrp~~v~G~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~---~~~ 293 (424)
|+.+|+++|.+++.++.+ .+++++++||++||||+.. ...++..+. .+..+ .++.++.. ..+
T Consensus 163 Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~ 241 (699)
T 1z45_A 163 YGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMA-QVAVGRREKLYIFGDDYDSRD 241 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHH-HHHTTSSSCCCCC------CC
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHH-HHHhcCCCceEEeCCcccCCC
Confidence 999999999999999876 6999999999999998531 123444343 33333 34544410 015
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCC
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGD 373 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~ 373 (424)
+++.++|||++|+|++++.+++......+. ...+++||+++++++|+.|+++.+.+.+|.+.+....+. +..+
T Consensus 242 g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~------~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~ 314 (699)
T 1z45_A 242 GTPIRDYIHVVDLAKGHIAALQYLEAYNEN------EGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR-RAGD 314 (699)
T ss_dssp SSCEECEEEHHHHHHHHHHHHHHHHHSCTT------CCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC----------
T ss_pred CCeeEeeEEHHHHHHHHHHHHhhhhccccc------cCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCC-CCCc
Confidence 678999999999999999998764210000 012379999999999999999999999998876554432 2344
Q ss_pred cccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 374 VQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 374 ~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
.....+|++|++++|||+|+++++++|+++++|++++..
T Consensus 315 ~~~~~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~~ 353 (699)
T 1z45_A 315 VLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPF 353 (699)
T ss_dssp CCCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred cccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence 556789999999999999999999999999999987543
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-41 Score=320.02 Aligned_cols=303 Identities=19% Similarity=0.262 Sum_probs=236.0
Q ss_pred eEEEEcCCChhHHHHHHHHHhC--CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKR--GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+||||||+||||++|+++|+++ |++|++++|+.... .++.++.+|++|.+++.++++..++|+|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--------------~~~~~~~~D~~d~~~~~~~~~~~~~d~v 66 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT--------------GGIKFITLDVSNRDEIDRAVEKYSIDAI 66 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC--------------TTCCEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc--------------cCceEEEecCCCHHHHHHHHhhcCCcEE
Confidence 4899999999999999999999 89999999864321 1567899999999999999986567999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC-CCCCCCCCCCCCCCChHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNK-KVPFSEKDRTDQPASLYAATKKA 237 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~-~~~~~e~~~~~~~~~~Y~~sK~~ 237 (424)
||+|+.... ....+++..+++|+.|+.+++++|++.+++ +||++||.++|+... ..+..|+.+. .|.+.|+.+|++
T Consensus 67 ih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~-~p~~~Y~~sK~~ 143 (317)
T 3ajr_A 67 FHLAGILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPSTIGVFGPETPKNKVPSITIT-RPRTMFGVTKIA 143 (317)
T ss_dssp EECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCTTSCSSSBCSSSCC-CCCSHHHHHHHH
T ss_pred EECCcccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCCCCCCccccccC-CCCchHHHHHHH
Confidence 999997542 234577889999999999999999998875 999999999998653 3345555544 788999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----CcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHH
Q 042406 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD----MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAG 313 (424)
Q Consensus 238 ~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 313 (424)
+|.+++.+.+++|++++++||+.+||+...+. .....++...+.+..+..+ ++++..++|+|++|+|++++.+
T Consensus 144 ~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~~ 220 (317)
T 3ajr_A 144 AELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCY---LAPNRALPMMYMPDALKALVDL 220 (317)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEEC---SCTTCCEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceee---cCccceeeeeEHHHHHHHHHHH
Confidence 99999999888899999999999999753221 1122233344455555544 4677889999999999999999
Q ss_pred hhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCC--CCcccccCChHHHHhHcCCc
Q 042406 314 LDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN--GDVQFTHANISLAQRELGYM 391 (424)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~--~~~~~~~~d~s~~~~~LG~~ 391 (424)
++.+.... ..+++||+++ ..+|+.|+++.+.+.+|. ..+.+.+..+. .......+|++|++++|||+
T Consensus 221 l~~~~~~~---------~~g~~~~i~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 289 (317)
T 3ajr_A 221 YEADRDKL---------VLRNGYNVTA-YTFTPSELYSKIKERIPE-FEIEYKEDFRDKIAATWPESLDSSEASNEWGFS 289 (317)
T ss_dssp HHCCGGGC---------SSCSCEECCS-EEECHHHHHHHHHTTCCS-CCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCC
T ss_pred HhCCcccc---------ccCceEecCC-ccccHHHHHHHHHHHCCc-cccccccccchhhccccccccCHHHHHHHcCCC
Confidence 98754311 1237999986 579999999999999883 22222221000 01112467999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHhccC
Q 042406 392 PTTDLETGLKKFVRWYLSYYNSA 414 (424)
Q Consensus 392 p~~~l~~~l~~~v~~~~~~~~~~ 414 (424)
|+++++++|+++++|++++....
T Consensus 290 p~~~~~~~l~~~~~~~~~~~~~~ 312 (317)
T 3ajr_A 290 IEYDLDRTIDDMIDHISEKLGIE 312 (317)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999887653
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=321.93 Aligned_cols=292 Identities=17% Similarity=0.207 Sum_probs=209.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+||||||+||||++|+++|+++|++|++++|+.+. .+ ++.+|++|.+++.+++++.++|+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------------~~--~~~~Dl~d~~~~~~~~~~~~~d~v 64 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR---------------PK--FEQVNLLDSNAVHHIIHDFQPHVI 64 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CHHHHHHHCCSEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC---------------CC--eEEecCCCHHHHHHHHHhhCCCEE
Confidence 5789999999999999999999999999999984321 12 788999999999999987667999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
|||||.........+++..+++|+.|+.+++++|.+.+. +||++||.++|+. ...+++|+++. .|.+.|+.+|+++
T Consensus 65 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~~~-~~~~~~E~~~~-~~~~~Y~~sK~~~ 140 (315)
T 2ydy_A 65 VHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYISSDYVFDG-TNPPYREEDIP-APLNLYGKTKLDG 140 (315)
T ss_dssp EECC-------------------CHHHHHHHHHHHHHTC--EEEEEEEGGGSCS-SSCSBCTTSCC-CCCSHHHHHHHHH
T ss_pred EECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEchHHHcCC-CCCCCCCCCCC-CCcCHHHHHHHHH
Confidence 999998655444567788999999999999999999874 8999999999987 45678888765 6789999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCC-CcHHHHHHHHH-cCCceeEEecCCCCccccccccHHHHHHHHHHHhhh
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYGPWGRPD-MAYFFFTRDII-RGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 316 (424)
|.+++.+ ++++++|||+.||||..... .++..++..+. .+..+.+. ++..++++|++|+|++++.++++
T Consensus 141 e~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~a~~~~~~~ 211 (315)
T 2ydy_A 141 EKAVLEN----NLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMD-----HWQQRFPTHVKDVATVCRQLAEK 211 (315)
T ss_dssp HHHHHHH----CTTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEE-----CSSBBCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHh----CCCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeec-----cCceECcEEHHHHHHHHHHHHHh
Confidence 9999886 67889999999999976521 23445666666 67666553 35788999999999999999876
Q ss_pred ccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccc-cccccC-C--CCCCcccccCChHHHHhHcCCcc
Q 042406 317 AKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE-TKVLPL-P--RNGDVQFTHANISLAQRELGYMP 392 (424)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~-~~~~~~-~--~~~~~~~~~~d~s~~~~~LG~~p 392 (424)
..... ..+++||+++++++|+.|+++.+.+.+|.+.. +...+. + .........+|++|+++. ||+|
T Consensus 212 ~~~~~---------~~~~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~~p 281 (315)
T 2ydy_A 212 RMLDP---------SIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETL-GIGQ 281 (315)
T ss_dssp HHTCT---------TCCEEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHT-TCCC
T ss_pred hcccc---------CCCCeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhc-CCCC
Confidence 41100 12389999999999999999999999998754 222221 1 112234567899999997 9999
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 042406 393 TTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 393 ~~~l~~~l~~~v~~~~~~ 410 (424)
.++++++|+++++||++.
T Consensus 282 ~~~~~~~l~~~~~~~~~~ 299 (315)
T 2ydy_A 282 RTPFRIGIKESLWPFLID 299 (315)
T ss_dssp CCCHHHHHHHHHGGGCC-
T ss_pred CCCHHHHHHHHHHHHccc
Confidence 999999999999999876
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=320.33 Aligned_cols=306 Identities=19% Similarity=0.178 Sum_probs=241.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCC-------CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHH
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRG-------DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDK 148 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~ 148 (424)
.+++|+||||||+||||++|+++|+++| ++|++++|+.+.... ....++.++.+|++|.+++.+
T Consensus 11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~ 81 (342)
T 2hrz_A 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA---------GFSGAVDARAADLSAPGEAEK 81 (342)
T ss_dssp CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT---------TCCSEEEEEECCTTSTTHHHH
T ss_pred CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc---------ccCCceeEEEcCCCCHHHHHH
Confidence 3578999999999999999999999999 899999997543211 123568899999999999999
Q ss_pred HhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-----CCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 149 IFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-----PQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 149 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-----~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++++ ++|+||||||... .....+++..+++|+.|+.+++++|++.+ ++ +||++||.++|+.....+++|+++
T Consensus 82 ~~~~-~~d~vih~A~~~~-~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~-~iv~~SS~~~~~~~~~~~~~E~~~ 158 (342)
T 2hrz_A 82 LVEA-RPDVIFHLAAIVS-GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKP-RVVFTSSIAVFGAPLPYPIPDEFH 158 (342)
T ss_dssp HHHT-CCSEEEECCCCCH-HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCC-EEEEEEEGGGCCSSCCSSBCTTCC
T ss_pred HHhc-CCCEEEECCccCc-ccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCc-EEEEeCchHhhCCCCCCCcCCCCC
Confidence 9852 4599999999754 23346778899999999999999998876 44 999999999999765668888876
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccC-CCCCCC---CcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYG-PWGRPD---MAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
. .|.+.|+.+|+++|.++++++.+++++.+++|++.||| |+.... .++..++..+..+.+..+. .+++..++
T Consensus 159 ~-~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 234 (342)
T 2hrz_A 159 T-TPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLP---VPESIRHW 234 (342)
T ss_dssp C-CCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEEC---SCTTCEEE
T ss_pred C-CCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeecc---CCCcccee
Confidence 6 67899999999999999999888889999999999999 654322 2455667777788776553 34567788
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccc--cccccCCCCC---Cc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAE--TKVLPLPRNG---DV 374 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~--~~~~~~~~~~---~~ 374 (424)
++|++|+|++++.+++.+.... ..+++||++ ++.+|+.|+++.+.+.+|.+.. +...+.+... ..
T Consensus 235 ~~~v~Dva~~~~~~~~~~~~~~---------~~~~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 304 (342)
T 2hrz_A 235 HASPRSAVGFLIHGAMIDVEKV---------GPRRNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCEG 304 (342)
T ss_dssp EECHHHHHHHHHHHHHSCHHHH---------CSCCEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHTT
T ss_pred eEehHHHHHHHHHHHhcccccc---------CCccEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhcc
Confidence 9999999999999987654210 012799996 5779999999999999997652 2222211100 01
Q ss_pred ccccCChHHHHhHcCCcccCCHHHHHHHHHHHHH
Q 042406 375 QFTHANISLAQRELGYMPTTDLETGLKKFVRWYL 408 (424)
Q Consensus 375 ~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~ 408 (424)
....+|++|+++ |||+|.++++++|+++++|++
T Consensus 305 ~~~~~d~~k~~~-lG~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 305 WAPGFEAKRARE-LGFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp SCCCBCCHHHHH-TTCCCCSSHHHHHHHHHHHHS
T ss_pred cccccChHHHHH-cCCCCCCCHHHHHHHHHHHhc
Confidence 113579999998 999999999999999999987
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=318.52 Aligned_cols=305 Identities=19% Similarity=0.163 Sum_probs=231.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEE-EccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVI-DADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~v~~~~~~~~ 154 (424)
.+++|+||||||+||||++|+++|+++|++|++++|+.+.......... .....+++++ .+|++|.+++.++++++
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~d~~~~~~~~~~~- 84 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWD--AKYPGRFETAVVEDMLKQGAYDEVIKGA- 84 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH--HHSTTTEEEEECSCTTSTTTTTTTTTTC-
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhh--ccCCCceEEEEecCCcChHHHHHHHcCC-
Confidence 4678999999999999999999999999999999996543221111111 0112578888 89999999999998855
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHh-cCCCCeEEEecCCcccCCCCC----CCCCCCCC------
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKS-SDPQPAIVWASSSSVYGVNKK----VPFSEKDR------ 223 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~-~~~~~~~v~~SS~~vyg~~~~----~~~~e~~~------ 223 (424)
|+||||||..... .+++..+++|+.|+.+++++|.+ .+++ +||++||.++|+.... .+++|+++
T Consensus 85 -d~vih~A~~~~~~---~~~~~~~~~n~~g~~~ll~~~~~~~~~~-~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~ 159 (342)
T 1y1p_A 85 -AGVAHIASVVSFS---NKYDEVVTPAIGGTLNALRAAAATPSVK-RFVLTSSTVSALIPKPNVEGIYLDEKSWNLESID 159 (342)
T ss_dssp -SEEEECCCCCSCC---SCHHHHHHHHHHHHHHHHHHHHTCTTCC-EEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHH
T ss_pred -CEEEEeCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHhCCCCc-EEEEeccHHHhcCCCCCCCCcccCccccCchhhh
Confidence 9999999986532 46788999999999999999985 4554 9999999999864321 46677652
Q ss_pred ---------CCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCC---cHHHHHHHHHcCCceeEEe
Q 042406 224 ---------TDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDM---AYFFFTRDIIRGKRITVYE 289 (424)
Q Consensus 224 ---------~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~~~ 289 (424)
+..|.+.|+.||+++|.+++.+++++ +++++++||++||||...... ....++..+..+.+..++
T Consensus 160 ~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (342)
T 1y1p_A 160 KAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL- 238 (342)
T ss_dssp HHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH-
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCcccc-
Confidence 11345789999999999999998876 789999999999999765432 667788888888876654
Q ss_pred cCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCC
Q 042406 290 APDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP 369 (424)
Q Consensus 290 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~ 369 (424)
+.+ ..++|+|++|+|++++.+++.+.. .++.+. +++..+|+.|+++.+.+.+|.+ .+. .+.+
T Consensus 239 --~~~-~~~~~v~v~Dva~a~~~~~~~~~~------------~g~~~~-~~g~~~s~~e~~~~i~~~~~~~-~~~-~~~~ 300 (342)
T 1y1p_A 239 --ALM-PPQYYVSAVDIGLLHLGCLVLPQI------------ERRRVY-GTAGTFDWNTVLATFRKLYPSK-TFP-ADFP 300 (342)
T ss_dssp --HTC-CSEEEEEHHHHHHHHHHHHHCTTC------------CSCEEE-ECCEEECHHHHHHHHHHHCTTS-CCC-CCCC
T ss_pred --ccC-CcCCEeEHHHHHHHHHHHHcCccc------------CCceEE-EeCCCCCHHHHHHHHHHHCCCc-cCC-CCCC
Confidence 233 678999999999999999876431 123443 4556799999999999999875 211 1111
Q ss_pred CCCCcccccCChHHHHhHcCC---cccCCHHHHHHHHHHHHH
Q 042406 370 RNGDVQFTHANISLAQRELGY---MPTTDLETGLKKFVRWYL 408 (424)
Q Consensus 370 ~~~~~~~~~~d~s~~~~~LG~---~p~~~l~~~l~~~v~~~~ 408 (424)
. .......+|++|+++.||| .+.++++++|+++++|++
T Consensus 301 ~-~~~~~~~~d~~k~~~~lg~~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 301 D-QGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp C-CCCCCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCSC
T ss_pred c-cccccccCChHHHHHHHhhcccCCcCCHHHHHHHHHHHhh
Confidence 1 1122356799999999887 455699999999999874
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-39 Score=312.03 Aligned_cols=296 Identities=16% Similarity=0.144 Sum_probs=232.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC-----CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRG-----DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g-----~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+|+||||||+||||++|+++|+++| ++|++++|+.+... ....+++++.+|++|.+++.+++++.
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~----------~~~~~~~~~~~Dl~d~~~~~~~~~~~ 70 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW----------HEDNPINYVQCDISDPDDSQAKLSPL 70 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC----------CCSSCCEEEECCTTSHHHHHHHHTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc----------cccCceEEEEeecCCHHHHHHHHhcC
Confidence 4789999999999999999999999 99999999765321 12357899999999999999999985
Q ss_pred C-ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc--CCCCeEE-------EecCCcccCCC--CCCCCCCC
Q 042406 154 A-FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS--DPQPAIV-------WASSSSVYGVN--KKVPFSEK 221 (424)
Q Consensus 154 ~-~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~--~~~~~~v-------~~SS~~vyg~~--~~~~~~e~ 221 (424)
+ +|+|||+||... .+++..+++|+.++.+++++|++. +++ +|| |+||.++||.. ...+++|+
T Consensus 71 ~~~d~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~-~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~ 144 (364)
T 2v6g_A 71 TDVTHVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLK-HISLQTGRKHYMGPFESYGKIESHDPPYTED 144 (364)
T ss_dssp TTCCEEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCC-EEEEECCTHHHHCCGGGTTTSCCCCSSBCTT
T ss_pred CCCCEEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccc-eEEeccCceEEEechhhccccccCCCCCCcc
Confidence 4 799999999753 467889999999999999999987 664 887 89999999975 34577887
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhC-CcEEEEEeccccCCCCCC--CCcHHH-HHHHH--HcCCceeEEecCCCC-
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIYG-LSITGLRFFTVYGPWGRP--DMAYFF-FTRDI--IRGKRITVYEAPDGA- 294 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~-i~~~~vrp~~v~G~~~~~--~~~~~~-~~~~~--~~~~~~~~~~~~~~~- 294 (424)
++...+.+.| .++|.+++++.+.++ ++++++||+.||||+... +...+. +...+ ..+.++.++ +++
T Consensus 145 ~~~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~ 217 (364)
T 2v6g_A 145 LPRLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFT---GCKA 217 (364)
T ss_dssp SCCCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCC---SCHH
T ss_pred ccCCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecC---CCcc
Confidence 7653346778 458999988887676 999999999999997753 222333 34444 357666544 455
Q ss_pred --ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccc--cccCC-
Q 042406 295 --SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETK--VLPLP- 369 (424)
Q Consensus 295 --~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~--~~~~~- 369 (424)
....+++|++|+|++++.+++.+.. .+++||+++++++|+.|+++.+.+.+|.+.... ..|.+
T Consensus 218 ~~~~~~~~~~v~Dva~a~~~~~~~~~~------------~g~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~ 285 (364)
T 2v6g_A 218 AWDGYSDCSDADLIAEHHIWAAVDPYA------------KNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKL 285 (364)
T ss_dssp HHHSCBCCEEHHHHHHHHHHHHHCGGG------------TTEEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCH
T ss_pred cccccCCCCcHHHHHHHHHHHHhCCCC------------CCceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccH
Confidence 3457888899999999999986532 237999999999999999999999999876533 22221
Q ss_pred --------------------CCC---Cc-----------cc-ccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHH
Q 042406 370 --------------------RNG---DV-----------QF-THANISLAQRELGYMPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 370 --------------------~~~---~~-----------~~-~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~ 410 (424)
... .. .. ..+|++|+++ |||+|.++++++|+++++|+++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~ 360 (364)
T 2v6g_A 286 QDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAKAY 360 (364)
T ss_dssp HHHTTTCHHHHHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhhhHHHHHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHHHc
Confidence 011 10 23 4789999987 99999889999999999999865
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-39 Score=308.14 Aligned_cols=306 Identities=19% Similarity=0.224 Sum_probs=217.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.++|+||||||+||||++|+++|+++|++|++++|+.+....... .........+++++.+|++|.+++.++++++ |
T Consensus 3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 79 (337)
T 2c29_D 3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKH-LLDLPKAETHLTLWKADLADEGSFDEAIKGC--T 79 (337)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHH-HHTSTTHHHHEEEEECCTTSTTTTHHHHTTC--S
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHH-HHhcccCCCeEEEEEcCCCCHHHHHHHHcCC--C
Confidence 367899999999999999999999999999999997653211111 1000000135889999999999999999876 9
Q ss_pred EEEEcccccCchhhccChH-HHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc-ccCCCC-CCCCCCCCCCC-------
Q 042406 157 HVMHLAAQAGVRYAMQNPN-SYVESNIAGFVNLLETCKSSD-PQPAIVWASSSS-VYGVNK-KVPFSEKDRTD------- 225 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~-~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~-vyg~~~-~~~~~e~~~~~------- 225 (424)
+|||+|+... ....++. ..+++|+.|+.+++++|++.+ ++ +||++||.+ +|+... ..+++|+++..
T Consensus 80 ~Vih~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 156 (337)
T 2c29_D 80 GVFHVATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVR-RLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAK 156 (337)
T ss_dssp EEEECCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCC-EEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHH
T ss_pred EEEEeccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCcc-EEEEeeeHhhcccCCCCCcccCcccCCchhhhccc
Confidence 9999998752 2223443 589999999999999999887 54 999999987 454322 23455554321
Q ss_pred -CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHH--HHcCCceeEEecCCCCcccccccc
Q 042406 226 -QPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRD--IIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 -~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.+...|+.||.++|.++.++.+.+|+++++|||++||||+..... ...+... ...+.... + +.. ....|+|
T Consensus 157 ~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~-~~~~~~~~~~~~g~~~~-~---~~~-~~~~~i~ 230 (337)
T 2c29_D 157 KMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSM-PPSLITALSPITGNEAH-Y---SII-RQGQFVH 230 (337)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSC-CHHHHHHTHHHHTCGGG-H---HHH-TEEEEEE
T ss_pred CCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCC-CchHHHHHHHHcCCCcc-c---ccc-CCCCEEE
Confidence 134579999999999999988778999999999999999764332 1111111 13343321 1 111 1234999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCc-ccccccccCCCCCCcccccCCh
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKV-KAETKVLPLPRNGDVQFTHANI 381 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~d~ 381 (424)
++|+|++++.+++.+.. ++.|++++ ..+|+.|+++.+.+.++. +.+....+ ...+.....+|+
T Consensus 231 v~Dva~a~~~~~~~~~~-------------~~~~~~~~-~~~s~~e~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~d~ 294 (337)
T 2c29_D 231 LDDLCNAHIYLFENPKA-------------EGRYICSS-HDCIILDLAKMLREKYPEYNIPTEFKG--VDENLKSVCFSS 294 (337)
T ss_dssp HHHHHHHHHHHHHCTTC-------------CEEEEECC-EEEEHHHHHHHHHHHCTTSCCCSCCTT--CCTTCCCCEECC
T ss_pred HHHHHHHHHHHhcCccc-------------CceEEEeC-CCCCHHHHHHHHHHHCCCccCCCCCCc--ccCCCccccccH
Confidence 99999999998875321 15687665 458999999999998742 22211111 122334567899
Q ss_pred HHHHhHcCCcccCCHHHHHHHHHHHHHHHh
Q 042406 382 SLAQRELGYMPTTDLETGLKKFVRWYLSYY 411 (424)
Q Consensus 382 s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~ 411 (424)
+|+ ++|||+|+++++|+|+++++|+++..
T Consensus 295 ~k~-~~lG~~p~~~l~e~l~~~~~~~~~~~ 323 (337)
T 2c29_D 295 KKL-TDLGFEFKYSLEDMFTGAVDTCRAKG 323 (337)
T ss_dssp HHH-HHHTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred HHH-HHcCCCcCCCHHHHHHHHHHHHHHcC
Confidence 999 78999999999999999999998753
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=312.95 Aligned_cols=306 Identities=17% Similarity=0.179 Sum_probs=213.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+||||||+||||++|+++|+++|++|+++.|+.+........... ....+++++.+|++|.+++.++++++ |+|
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~--D~V 84 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLEL--QELGDLKIFRADLTDELSFEAPIAGC--DFV 84 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHH--GGGSCEEEEECCTTTSSSSHHHHTTC--SEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhc--CCCCcEEEEecCCCChHHHHHHHcCC--CEE
Confidence 68999999999999999999999999999999975432211110011 12357899999999999999999876 999
Q ss_pred EEcccccCchhhccCh-HHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc-ccCCC-C--CCCCCCCCCCC-------
Q 042406 159 MHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSS-VYGVN-K--KVPFSEKDRTD------- 225 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~-~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~-vyg~~-~--~~~~~e~~~~~------- 225 (424)
||+|+.... ...++ +..+++|+.|+.+++++|++.+ ++ +||++||.+ +|+.. . ..+++|+++..
T Consensus 85 ih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~-r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 161 (338)
T 2rh8_A 85 FHVATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVK-RVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSA 161 (338)
T ss_dssp EEESSCCCC-----------CHHHHHHHHHHHHHHHHCTTCC-EEEEECCHHHHHHHHHTCSCCCCCTTTTTCC------
T ss_pred EEeCCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcC-EEEEEecHHHeecCCcCCCCcccChhhccchhhcccc
Confidence 999987532 22333 3489999999999999999986 54 999999987 44321 1 12566665321
Q ss_pred CC-CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHH-HHHHHHHcCCceeEEecCC---CCcccccc
Q 042406 226 QP-ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYF-FFTRDIIRGKRITVYEAPD---GASVARDF 300 (424)
Q Consensus 226 ~~-~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 300 (424)
.+ ...|+.||.++|.++.++.+.+|+++++|||++||||+........ ..+.....+.... +.... ..+..++|
T Consensus 162 ~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 240 (338)
T 2rh8_A 162 KPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFL-INGMKGMQMLSGSVSI 240 (338)
T ss_dssp -CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHSSEEE
T ss_pred CCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccc-cccccccccccCcccE
Confidence 11 1269999999999999988778999999999999999764332110 1111223444321 10000 00123489
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCc-ccccccccCCCCCCcccccC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKV-KAETKVLPLPRNGDVQFTHA 379 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~ 379 (424)
+|++|+|++++.+++.+.. ++.|+++++ .+|+.|+++.+.+.++. +.+....+ .... ....+
T Consensus 241 i~v~Dva~a~~~~~~~~~~-------------~~~~~~~~~-~~s~~e~~~~l~~~~~~~~~~~~~~~--~~~~-~~~~~ 303 (338)
T 2rh8_A 241 AHVEDVCRAHIFVAEKESA-------------SGRYICCAA-NTSVPELAKFLSKRYPQYKVPTDFGD--FPPK-SKLII 303 (338)
T ss_dssp EEHHHHHHHHHHHHHCTTC-------------CEEEEECSE-EECHHHHHHHHHHHCTTSCCCCCCTT--SCSS-CSCCC
T ss_pred EEHHHHHHHHHHHHcCCCc-------------CCcEEEecC-CCCHHHHHHHHHHhCCCCCCCCCCCC--CCcC-cceee
Confidence 9999999999999875321 157888764 59999999999998762 22211111 1111 22678
Q ss_pred ChHHHHhHcCCcccCCHHHHHHHHHHHHHHH
Q 042406 380 NISLAQRELGYMPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 380 d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~ 410 (424)
|++|+ ++|||+|+++++|+|+++++|+++.
T Consensus 304 d~~k~-~~lG~~p~~~l~~gl~~~~~~~~~~ 333 (338)
T 2rh8_A 304 SSEKL-VKEGFSFKYGIEEIYDESVEYFKAK 333 (338)
T ss_dssp CCHHH-HHHTCCCSCCHHHHHHHHHHHHHHT
T ss_pred chHHH-HHhCCCCCCCHHHHHHHHHHHHHHc
Confidence 99999 6799999999999999999999864
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=302.17 Aligned_cols=304 Identities=17% Similarity=0.196 Sum_probs=212.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeC-CCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN-FNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+|+||||||+||||++|+++|+++|++|++++| +.+...... ..........++.++.+|++|.+++.++++++ |+
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d~ 77 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVS-FLTNLPGASEKLHFFNADLSNPDSFAAAIEGC--VG 77 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCH-HHHTSTTHHHHEEECCCCTTCGGGGHHHHTTC--SE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHH-HHHhhhccCCceEEEecCCCCHHHHHHHHcCC--CE
Confidence 578999999999999999999999999999998 542211110 01000001135788999999999999999976 99
Q ss_pred EEEcccccCchhhccCh-HHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCccc-CCC-CCCCCCCCCCCC-------C
Q 042406 158 VMHLAAQAGVRYAMQNP-NSYVESNIAGFVNLLETCKSS-DPQPAIVWASSSSVY-GVN-KKVPFSEKDRTD-------Q 226 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~-~~~~~~N~~g~~~ll~a~~~~-~~~~~~v~~SS~~vy-g~~-~~~~~~e~~~~~-------~ 226 (424)
|||+|+.. .....++ +..+++|+.|+.+++++|++. +++ +||++||.+++ +.. ...+++|+++.. .
T Consensus 78 vih~A~~~--~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~-~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 154 (322)
T 2p4h_X 78 IFHTASPI--DFAVSEPEEIVTKRTVDGALGILKACVNSKTVK-RFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVK 154 (322)
T ss_dssp EEECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCC-EEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHC
T ss_pred EEEcCCcc--cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEeccHHHcccCCCCCeecCCccccchhhhcccC
Confidence 99999753 2222333 458999999999999999987 554 99999998754 322 223455654321 1
Q ss_pred CCC-hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHH-HHHHHHHcCCceeEEecCCCCccccccccHH
Q 042406 227 PAS-LYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYF-FFTRDIIRGKRITVYEAPDGASVARDFTYID 304 (424)
Q Consensus 227 ~~~-~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 304 (424)
|.. .|+.||+++|.++.++.+.+|++++++||++||||......... ..+.....+....+ +. ..++|+|++
T Consensus 155 p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~----~~--~~~~~i~v~ 228 (322)
T 2p4h_X 155 PFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQI----GV--TRFHMVHVD 228 (322)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGC----CE--EEEEEEEHH
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccC----cC--CCcCEEEHH
Confidence 223 69999999999999988878999999999999999754321111 11112344544322 12 234899999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCc-ccccccccCCCCCCcccccCChHH
Q 042406 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKV-KAETKVLPLPRNGDVQFTHANISL 383 (424)
Q Consensus 305 Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~-~~~~~~~~~~~~~~~~~~~~d~s~ 383 (424)
|+|++++.+++.+. .. +.|| ++++.+|+.|+++.+.+.++. +.+......... ......+|++|
T Consensus 229 Dva~a~~~~~~~~~------------~~-g~~~-~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~k 293 (322)
T 2p4h_X 229 DVARAHIYLLENSV------------PG-GRYN-CSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIK-GARLPDLNTKK 293 (322)
T ss_dssp HHHHHHHHHHHSCC------------CC-EEEE-CCCEEEEHHHHHHHHHHHCTTSCCCCTTTTTTCC-CEECCEECCHH
T ss_pred HHHHHHHHHhhCcC------------CC-CCEE-EcCCCCCHHHHHHHHHHhCCCCCCCCCccccCCC-CCcceecccHH
Confidence 99999999986532 11 3488 556789999999999988752 221110000011 11456789999
Q ss_pred HHhHcCCcccCCHHHHHHHHHHHHHHH
Q 042406 384 AQRELGYMPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 384 ~~~~LG~~p~~~l~~~l~~~v~~~~~~ 410 (424)
+ ++|||+|+++++++|+++++|+++.
T Consensus 294 ~-~~lG~~p~~~~~~~l~~~~~~~~~~ 319 (322)
T 2p4h_X 294 L-VDAGFDFKYTIEDMFDDAIQCCKEK 319 (322)
T ss_dssp H-HHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred H-HHhCCccCCCHHHHHHHHHHHHHhc
Confidence 9 6699999999999999999999865
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-39 Score=301.13 Aligned_cols=269 Identities=16% Similarity=0.175 Sum_probs=215.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+|||||| ||||++|+++|+++|++|++++|+.+.... ....+++++.+|++|.+ +.+ +|+|
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~D~~d~~-----~~~--~d~v 67 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEA---------IRASGAEPLLWPGEEPS-----LDG--VTHL 67 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHH---------HHHTTEEEEESSSSCCC-----CTT--CCEE
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhh---------HhhCCCeEEEecccccc-----cCC--CCEE
Confidence 479999998 999999999999999999999996543211 12257999999999954 554 5999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHh--cCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKS--SDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKK 236 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~--~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~ 236 (424)
||+|+..... + ..+.++++++++ .+++ +|||+||.++||.....+++|+++. .|.+.|+.+|+
T Consensus 68 i~~a~~~~~~----~---------~~~~~l~~a~~~~~~~~~-~~v~~Ss~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~ 132 (286)
T 3ius_A 68 LISTAPDSGG----D---------PVLAALGDQIAARAAQFR-WVGYLSTTAVYGDHDGAWVDETTPL-TPTAARGRWRV 132 (286)
T ss_dssp EECCCCBTTB----C---------HHHHHHHHHHHHTGGGCS-EEEEEEEGGGGCCCTTCEECTTSCC-CCCSHHHHHHH
T ss_pred EECCCccccc----c---------HHHHHHHHHHHhhcCCce-EEEEeecceecCCCCCCCcCCCCCC-CCCCHHHHHHH
Confidence 9999975421 1 125788999988 5655 9999999999998877788888876 78899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhh
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 316 (424)
++|.+++.+ .+++++++||+++|||+... +..+..+....+. .+++.++|+|++|+|++++.++++
T Consensus 133 ~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~-------~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~a~~~~~~~ 198 (286)
T 3ius_A 133 MAEQQWQAV---PNLPLHVFRLAGIYGPGRGP-------FSKLGKGGIRRII----KPGQVFSRIHVEDIAQVLAASMAR 198 (286)
T ss_dssp HHHHHHHHS---TTCCEEEEEECEEEBTTBSS-------STTSSSSCCCEEE----CTTCCBCEEEHHHHHHHHHHHHHS
T ss_pred HHHHHHHhh---cCCCEEEEeccceECCCchH-------HHHHhcCCccccC----CCCcccceEEHHHHHHHHHHHHhC
Confidence 999999887 59999999999999997543 2344567777665 346789999999999999999987
Q ss_pred ccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccccccc-CCCCCC------cccccCChHHHHhHcC
Q 042406 317 AKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP-LPRNGD------VQFTHANISLAQRELG 389 (424)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~-~~~~~~------~~~~~~d~s~~~~~LG 389 (424)
+.. +++||+++++++|+.|+++.+.+.+|.+....... .....+ .....+|++|+++.||
T Consensus 199 ~~~-------------g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 265 (286)
T 3ius_A 199 PDP-------------GAVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELG 265 (286)
T ss_dssp CCT-------------TCEEEECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTC
T ss_pred CCC-------------CCEEEEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHHHHhC
Confidence 652 27999999999999999999999999876543221 111111 1445689999999999
Q ss_pred CcccC-CHHHHHHHHHHH
Q 042406 390 YMPTT-DLETGLKKFVRW 406 (424)
Q Consensus 390 ~~p~~-~l~~~l~~~v~~ 406 (424)
|+|++ +++++|+++++.
T Consensus 266 ~~p~~p~~~e~l~~~~~~ 283 (286)
T 3ius_A 266 VRLKYPNYRVGLEALQAD 283 (286)
T ss_dssp CCCSCSSHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHh
Confidence 99998 799999998864
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=284.76 Aligned_cols=268 Identities=18% Similarity=0.184 Sum_probs=218.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|+||||+||||++++++|++ |++|++++|+.+. . .+ +.+|++|.+++.+++++.++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~----------~----~~---~~~Dl~~~~~~~~~~~~~~~d~vi 62 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEI----------Q----GG---YKLDLTDFPRLEDFIIKKRPDVII 62 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCC----------T----TC---EECCTTSHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcC----------C----CC---ceeccCCHHHHHHHHHhcCCCEEE
Confidence 5799999999999999999994 8999999996531 0 12 789999999999999985679999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
||||.........+++..+++|+.++.+++++|++.+. +||++||.++|+.... +++|+++. .|.+.|+.+|+++|
T Consensus 63 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~iv~~SS~~~~~~~~~-~~~e~~~~-~~~~~Y~~sK~~~e 138 (273)
T 2ggs_A 63 NAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS--YIVHISTDYVFDGEKG-NYKEEDIP-NPINYYGLSKLLGE 138 (273)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEEEGGGSCSSSC-SBCTTSCC-CCSSHHHHHHHHHH
T ss_pred ECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEecceeEcCCCC-CcCCCCCC-CCCCHHHHHHHHHH
Confidence 99998765555677889999999999999999998774 8999999999986543 77787765 67889999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
.+++. ++++++||+.|||+ ..+...++..+..+.++.++ + + .++++|++|+|++++.+++.+..
T Consensus 139 ~~~~~------~~~~~iR~~~v~G~----~~~~~~~~~~~~~~~~~~~~---~--~-~~~~~~~~dva~~i~~~~~~~~~ 202 (273)
T 2ggs_A 139 TFALQ------DDSLIIRTSGIFRN----KGFPIYVYKTLKEGKTVFAF---K--G-YYSPISARKLASAILELLELRKT 202 (273)
T ss_dssp HHHCC------TTCEEEEECCCBSS----SSHHHHHHHHHHTTCCEEEE---S--C-EECCCBHHHHHHHHHHHHHHTCC
T ss_pred HHHhC------CCeEEEeccccccc----cHHHHHHHHHHHcCCCEEee---c--C-CCCceEHHHHHHHHHHHHhcCcC
Confidence 98876 57799999999983 33455566677778777765 2 2 78999999999999999986531
Q ss_pred cCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccC---CCCCCcccccCChHHHHhHcCCcc-cCC
Q 042406 320 STGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL---PRNGDVQFTHANISLAQRELGYMP-TTD 395 (424)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~~d~s~~~~~LG~~p-~~~ 395 (424)
++||+++ +.+|+.|+++.+.+.+|.+.+...... ..........+|++|++++|||+| .++
T Consensus 203 --------------g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~ 267 (273)
T 2ggs_A 203 --------------GIIHVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLD 267 (273)
T ss_dssp --------------EEEECCC-CCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCC
T ss_pred --------------CeEEECC-CcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCcc
Confidence 6999999 999999999999999998765432111 112223456799999999999999 578
Q ss_pred HHHHH
Q 042406 396 LETGL 400 (424)
Q Consensus 396 l~~~l 400 (424)
+++++
T Consensus 268 l~~~~ 272 (273)
T 2ggs_A 268 LDGMV 272 (273)
T ss_dssp GGGCC
T ss_pred ccccc
Confidence 88765
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=293.13 Aligned_cols=308 Identities=18% Similarity=0.223 Sum_probs=226.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHH---HHHh------hhhccCCeEEEEccCCCHHH
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLK---KARK------GLLERAGVFVIDADINDKSL 145 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---~~~~------~~~~~~~v~~~~~Dl~d~~~ 145 (424)
....+|+||||||+||||++|+++|+++|++|++++|+.+....... .... ......++.++.+|++|.++
T Consensus 65 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 144 (427)
T 4f6c_A 65 SHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD 144 (427)
T ss_dssp CCCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence 34567899999999999999999999999999999998763221111 0000 11124689999999999888
Q ss_pred HHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC-----CCCCCCCC
Q 042406 146 LDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV-----NKKVPFSE 220 (424)
Q Consensus 146 v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~-----~~~~~~~e 220 (424)
+. .+. ++|+||||||.... ..+++..+++|+.|+.+++++|++ +. ++||++||.++ |. ....+++|
T Consensus 145 l~-~~~--~~d~Vih~A~~~~~---~~~~~~~~~~Nv~g~~~l~~aa~~-~~-~~~v~~SS~~~-G~~~~~~~~~~~~~E 215 (427)
T 4f6c_A 145 VV-LPE--NMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HH-ARLIYVSTISV-GTYFDIDTEDVTFSE 215 (427)
T ss_dssp CC-CSS--CCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHH-TT-CEEEEEEEGGG-GSEECSSCSCCEECT
T ss_pred CC-CcC--CCCEEEECCcccCC---CCCHHHHHHHHHHHHHHHHHHHHh-cC-CcEEEECchHh-CCCccCCCCCccccc
Confidence 87 444 56999999998642 345678999999999999999999 54 49999999998 53 23456777
Q ss_pred CCCC--CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-------CcHHHHHHHHHcCCceeEEecC
Q 042406 221 KDRT--DQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD-------MAYFFFTRDIIRGKRITVYEAP 291 (424)
Q Consensus 221 ~~~~--~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
+++. ..+.+.|+.+|+++|.+++++.+ .|++++++|||+||||..... ..+..++..+..+..++.
T Consensus 216 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 290 (427)
T 4f6c_A 216 ADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV---- 290 (427)
T ss_dssp TCSCSSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEH----
T ss_pred cccccCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCC----
Confidence 7752 24789999999999999999865 599999999999999976542 335677778877776654
Q ss_pred CCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCC-
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR- 370 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~- 370 (424)
+.++..++|++++|+|++++.++..+. .+++||+++++++++.|+++.+.+ ++ .+ ..+.+.
T Consensus 291 ~~~~~~~~~v~v~DvA~ai~~~~~~~~-------------~g~~~~l~~~~~~s~~el~~~i~~-~g--~~--~~~~~~~ 352 (427)
T 4f6c_A 291 SMAEMPVDFSFVDTTARQIVALAQVNT-------------PQIIYHVLSPNKMPVKSLLECVKR-KE--IE--LVSDESF 352 (427)
T ss_dssp HHHTCEECCEEHHHHHHHHHHHTTSCC-------------CCSEEEESCSCCEEHHHHHHHHHS-SC--CE--EECHHHH
T ss_pred ccccceEEEeeHHHHHHHHHHHHcCCC-------------CCCEEEecCCCCCcHHHHHHHHHH-cC--Cc--ccCHHHH
Confidence 245788999999999999999998754 128999999999999999999998 55 11 111000
Q ss_pred ------CC------------CcccccCChHHHH---hHcCCcccCCHHHHHHHHHHHHHHHhccC
Q 042406 371 ------NG------------DVQFTHANISLAQ---RELGYMPTTDLETGLKKFVRWYLSYYNSA 414 (424)
Q Consensus 371 ------~~------------~~~~~~~d~s~~~---~~LG~~p~~~l~~~l~~~v~~~~~~~~~~ 414 (424)
.+ ......+|+++.. +.+||.+...-++.++++++|+++.+.+.
T Consensus 353 ~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~~~~~ 417 (427)
T 4f6c_A 353 NEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNKA 417 (427)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHhcCchhhhhhhhccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 00 1112456777665 55799877555779999999999987654
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=278.19 Aligned_cols=245 Identities=19% Similarity=0.210 Sum_probs=200.6
Q ss_pred CCCCCCCCCCCeEEEEcCCChhHHHHHHHHHhC-CC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHH
Q 042406 70 KSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKR-GD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLD 147 (424)
Q Consensus 70 ~~~~~~~~~~~~vlItGg~G~iG~~l~~~L~~~-g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~ 147 (424)
++.....+++|+||||||+|+||++++++|+++ |+ +|++++|+........ ......++.++.+|++|.+++.
T Consensus 12 ~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~-----~~~~~~~v~~~~~Dl~d~~~l~ 86 (344)
T 2gn4_A 12 MPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMA-----MEFNDPRMRFFIGDVRDLERLN 86 (344)
T ss_dssp ----CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHH-----HHHCCTTEEEEECCTTCHHHHH
T ss_pred CccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHH-----HHhcCCCEEEEECCCCCHHHHH
Confidence 333345578999999999999999999999999 97 9999999643221111 1122368999999999999999
Q ss_pred HHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 042406 148 KIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227 (424)
Q Consensus 148 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~ 227 (424)
++++++ |+|||+||.........++...+++|+.|+.+++++|.+.+++ +||++||..++ .|
T Consensus 87 ~~~~~~--D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~SS~~~~---------------~p 148 (344)
T 2gn4_A 87 YALEGV--DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALSTDKAA---------------NP 148 (344)
T ss_dssp HHTTTC--SEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGS---------------SC
T ss_pred HHHhcC--CEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCCccC---------------CC
Confidence 999865 9999999987765566678899999999999999999999876 99999997664 34
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCC-ceeEEecCCCCccccccccH
Q 042406 228 ASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGK-RITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v 303 (424)
.+.|+.||+++|.+++.++.+ .|+++++||||+||||.+ ..++.+...+..++ ++.+. +++..++|+|+
T Consensus 149 ~~~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~---~~i~~~~~~~~~g~~~~~i~----~~~~~r~~i~v 221 (344)
T 2gn4_A 149 INLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG---SVVPFFKKLVQNKASEIPIT----DIRMTRFWITL 221 (344)
T ss_dssp CSHHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT---SHHHHHHHHHHHTCCCEEES----CTTCEEEEECH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC---CHHHHHHHHHHcCCCceEEe----CCCeEEeeEEH
Confidence 589999999999999998764 489999999999999864 35677888888888 77763 56778899999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhC
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g 358 (424)
+|+|++++.+++... .+++|++.++ .+++.|+++.+.+.++
T Consensus 222 ~D~a~~v~~~l~~~~-------------~g~~~~~~~~-~~s~~el~~~i~~~~~ 262 (344)
T 2gn4_A 222 DEGVSFVLKSLKRMH-------------GGEIFVPKIP-SMKMTDLAKALAPNTP 262 (344)
T ss_dssp HHHHHHHHHHHHHCC-------------SSCEEEECCC-EEEHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHhhcc-------------CCCEEecCCC-cEEHHHHHHHHHHhCC
Confidence 999999999998753 1279998776 5999999999987554
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=276.84 Aligned_cols=276 Identities=17% Similarity=0.135 Sum_probs=208.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|||||||||||++|+++|+++||+|+++.|++... .+..| +...+.++++ |+||
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~------------------~~~~~----~~~~~~l~~~--d~vi 56 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG------------------RITWD----ELAASGLPSC--DAAV 56 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT------------------EEEHH----HHHHHCCCSC--SEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC------------------eeecc----hhhHhhccCC--CEEE
Confidence 7899999999999999999999999999999954310 11112 2223445544 9999
Q ss_pred EcccccCch----hhccChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 160 HLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKSSDPQP-AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 160 ~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~-~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
|+|+..... +........+++|+.+|.+|+++++..+.++ +||++||+++||.....+.+|+++. .+.+.|+..
T Consensus 57 hla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~-~~~~~~~~~ 135 (298)
T 4b4o_A 57 NLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPG-GDFDFFSNL 135 (298)
T ss_dssp ECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCCC-SCSSHHHHH
T ss_pred EeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCCc-cccchhHHH
Confidence 999853221 1222335688999999999999999877543 5899999999999888888888866 677888888
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHh
Q 042406 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGL 314 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 314 (424)
|...|... .....+++++++||+.||||++. .+..+......+....+ +++++.++|||++|+|++++.++
T Consensus 136 ~~~~e~~~--~~~~~~~~~~~~r~~~v~g~~~~---~~~~~~~~~~~~~~~~~----g~g~~~~~~ihv~Dva~a~~~~~ 206 (298)
T 4b4o_A 136 VTKWEAAA--RLPGDSTRQVVVRSGVVLGRGGG---AMGHMLLPFRLGLGGPI----GSGHQFFPWIHIGDLAGILTHAL 206 (298)
T ss_dssp HHHHHHHH--CCSSSSSEEEEEEECEEECTTSH---HHHHHHHHHHTTCCCCB----TTSCSBCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHH--HhhccCCceeeeeeeeEEcCCCC---chhHHHHHHhcCCccee----cccCceeecCcHHHHHHHHHHHH
Confidence 88777543 22345899999999999999652 34455555556655544 78999999999999999999999
Q ss_pred hhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCC------CCc------ccccCChH
Q 042406 315 DTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN------GDV------QFTHANIS 382 (424)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~------~~~------~~~~~d~s 382 (424)
+++... ++||+++++++|+.|+++.+.+.+|++..+ |.|.. +.. ......+.
T Consensus 207 ~~~~~~-------------g~yn~~~~~~~t~~e~~~~ia~~lgrp~~~---pvP~~~~~~~~g~~~~~~~l~~~rv~~~ 270 (298)
T 4b4o_A 207 EANHVH-------------GVLNGVAPSSATNAEFAQTFGAALGRRAFI---PLPSAVVQAVFGRQRAIMLLEGQKVIPR 270 (298)
T ss_dssp HCTTCC-------------EEEEESCSCCCBHHHHHHHHHHHHTCCCCC---CBCHHHHHHHHCHHHHHHHHCCCCBCCH
T ss_pred hCCCCC-------------CeEEEECCCccCHHHHHHHHHHHhCcCCcc---cCCHHHHHHHhcchhHHHhhCCCEEcHH
Confidence 876532 699999999999999999999999986532 22210 000 11234567
Q ss_pred HHHhHcCCcccC-CHHHHHHHHHHH
Q 042406 383 LAQRELGYMPTT-DLETGLKKFVRW 406 (424)
Q Consensus 383 ~~~~~LG~~p~~-~l~~~l~~~v~~ 406 (424)
|++ ++||++++ +++++|++.++.
T Consensus 271 kl~-~~Gf~f~yp~l~~al~~l~~~ 294 (298)
T 4b4o_A 271 RTL-ATGYQYSFPELGAALKEIAEN 294 (298)
T ss_dssp HHH-HTTCCCSCCSHHHHHHHHHHC
T ss_pred HHH-HCCCCCCCCCHHHHHHHHHHh
Confidence 775 59999997 699999988873
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=301.15 Aligned_cols=282 Identities=16% Similarity=0.116 Sum_probs=206.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+||||||+||||++|++.|+++|++|++++|+.... ..+.+|+.+. +.+++++ +|+|
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~-----------------~~v~~d~~~~--~~~~l~~--~D~V 205 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP-----------------GKRFWDPLNP--ASDLLDG--ADVL 205 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT-----------------TCEECCTTSC--CTTTTTT--CSEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc-----------------cceeecccch--hHHhcCC--CCEE
Confidence 78999999999999999999999999999999965421 1256787753 3455554 4999
Q ss_pred EEcccccCc-hhhccChHHHHHHHHHHHHHHHHH-HHhcCCCCeEEEecCCcccC-CCCCCCCCCCCCCCCCCChHHHHH
Q 042406 159 MHLAAQAGV-RYAMQNPNSYVESNIAGFVNLLET-CKSSDPQPAIVWASSSSVYG-VNKKVPFSEKDRTDQPASLYAATK 235 (424)
Q Consensus 159 i~~Ag~~~~-~~~~~~~~~~~~~N~~g~~~ll~a-~~~~~~~~~~v~~SS~~vyg-~~~~~~~~e~~~~~~~~~~Y~~sK 235 (424)
|||||.... .+...+++.++++|+.|+.+|+++ ++..+++ +||++||.++|| .....+++|+++. +.+.|+.+|
T Consensus 206 ih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~-r~V~~SS~~vyg~~~~~~~~~E~~~~--~~~~y~~~~ 282 (516)
T 3oh8_A 206 VHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCT-TMISASAVGFYGHDRGDEILTEESES--GDDFLAEVC 282 (516)
T ss_dssp EECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCC-EEEEEEEGGGGCSEEEEEEECTTSCC--CSSHHHHHH
T ss_pred EECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCC-EEEEeCcceEecCCCCCCccCCCCCC--CcChHHHHH
Confidence 999998543 233455678999999999999999 5656654 999999999999 4445577777754 678999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhh
Q 042406 236 KAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315 (424)
Q Consensus 236 ~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 315 (424)
...|.++..+ ...|++++++||++||||+. ..+..+...+..+....+ +++++.++|||++|+|++++.+++
T Consensus 283 ~~~E~~~~~~-~~~gi~~~ilRp~~v~Gp~~---~~~~~~~~~~~~g~~~~~----g~g~~~~~~i~v~Dva~ai~~~l~ 354 (516)
T 3oh8_A 283 RDWEHATAPA-SDAGKRVAFIRTGVALSGRG---GMLPLLKTLFSTGLGGKF----GDGTSWFSWIAIDDLTDIYYRAIV 354 (516)
T ss_dssp HHHHHTTHHH-HHTTCEEEEEEECEEEBTTB---SHHHHHHHTTC---CCCC----TTSCCEECEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCCCEEEEEeeEEECCCC---ChHHHHHHHHHhCCCccc----CCCCceEceEeHHHHHHHHHHHHh
Confidence 9999876554 44699999999999999974 344455444444443322 678899999999999999999998
Q ss_pred hccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCC----CCCc-------ccccCChHHH
Q 042406 316 TAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR----NGDV-------QFTHANISLA 384 (424)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~----~~~~-------~~~~~d~s~~ 384 (424)
++.. +++||+++++++|+.|+++.+.+.+|.+..+ ..|... .++. .....+++|+
T Consensus 355 ~~~~-------------~g~~ni~~~~~~s~~el~~~i~~~~g~~~~~-~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl 420 (516)
T 3oh8_A 355 DAQI-------------SGPINAVAPNPVSNADMTKILATSMHRPAFI-QIPSLGPKILLGSQGAEELALASQRTAPAAL 420 (516)
T ss_dssp CTTC-------------CEEEEESCSCCEEHHHHHHHTTC----------------------CCGGGGGGCEEEECCHHH
T ss_pred Cccc-------------CCcEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCHHHHHHHhCCchhHHHhhcCCeechHHH
Confidence 7542 1689999999999999999999999977522 122110 1111 1223577888
Q ss_pred HhHcCCcccCC-HHHHHHHHHHHH
Q 042406 385 QRELGYMPTTD-LETGLKKFVRWY 407 (424)
Q Consensus 385 ~~~LG~~p~~~-l~~~l~~~v~~~ 407 (424)
+ .|||.|+++ ++++|++++++.
T Consensus 421 ~-~lG~~~~~~~l~e~l~~~l~~~ 443 (516)
T 3oh8_A 421 E-NLSHTFRYTDIGAAIAHELGYE 443 (516)
T ss_dssp H-HTTCCCSCSSHHHHHHHHHTCC
T ss_pred H-HCCCCCCCCCHHHHHHHHhCcc
Confidence 7 699999986 999999998864
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=270.44 Aligned_cols=261 Identities=18% Similarity=0.164 Sum_probs=203.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC--CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKR--GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|+|+||||+||||++++++|+++ |++|++++|+.+.... +...+++++.+|++|.+++.++++++ |+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~---------l~~~~~~~~~~D~~d~~~l~~~~~~~--d~ 69 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST---------LADQGVEVRHGDYNQPESLQKAFAGV--SK 69 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHH---------HHHTTCEEEECCTTCHHHHHHHTTTC--SE
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhH---------HhhcCCeEEEeccCCHHHHHHHHhcC--CE
Confidence 57999999999999999999999 9999999997643221 11247889999999999999999976 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKA 237 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~ 237 (424)
|||+|+... . . ++|+.++.+++++|++.+++ +||++||.++|. .+ ..|+.+|.+
T Consensus 70 vi~~a~~~~-----~--~---~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~--------------~~-~~y~~~K~~ 123 (287)
T 2jl1_A 70 LLFISGPHY-----D--N---TLLIVQHANVVKAARDAGVK-HIAYTGYAFAEE--------------SI-IPLAHVHLA 123 (287)
T ss_dssp EEECCCCCS-----C--H---HHHHHHHHHHHHHHHHTTCS-EEEEEEETTGGG--------------CC-STHHHHHHH
T ss_pred EEEcCCCCc-----C--c---hHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCC--------------CC-CchHHHHHH
Confidence 999998621 1 1 67999999999999999875 999999998863 11 379999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 238 ~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
+|.++++ .|++++++||+.++|+... . ++..++...... + ..++..++|+|++|+|++++.+++.+
T Consensus 124 ~E~~~~~----~~~~~~ilrp~~~~~~~~~-~-----~~~~~~~~~~~~-~---~~~~~~~~~i~~~Dva~~~~~~~~~~ 189 (287)
T 2jl1_A 124 TEYAIRT----TNIPYTFLRNALYTDFFVN-E-----GLRASTESGAIV-T---NAGSGIVNSVTRNELALAAATVLTEE 189 (287)
T ss_dssp HHHHHHH----TTCCEEEEEECCBHHHHSS-G-----GGHHHHHHTEEE-E---SCTTCCBCCBCHHHHHHHHHHHHTSS
T ss_pred HHHHHHH----cCCCeEEEECCEeccccch-h-----hHHHHhhCCcee-c---cCCCCccCccCHHHHHHHHHHHhcCC
Confidence 9998864 5999999999999886421 1 122233223332 2 34677889999999999999999764
Q ss_pred cccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCC----------CCCC-------------c
Q 042406 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP----------RNGD-------------V 374 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~----------~~~~-------------~ 374 (424)
. ..+++||+++++.+|+.|+++.+.+.+|.+.++...|.. .+.. .
T Consensus 190 ~------------~~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (287)
T 2jl1_A 190 G------------HENKTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISK 257 (287)
T ss_dssp S------------CTTEEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred C------------CCCcEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC
Confidence 3 123799999998999999999999999988665443321 0100 0
Q ss_pred ccccCChHHHHhHcCCcccCCHHHHHHHHHH
Q 042406 375 QFTHANISLAQRELGYMPTTDLETGLKKFVR 405 (424)
Q Consensus 375 ~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~ 405 (424)
.....|++++++.|| |.++++|+|+++++
T Consensus 258 ~~~~~~~~~~~~~lG--~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 258 GEASKTSDDLQKLIG--SLTPLKETVKQALK 286 (287)
T ss_dssp TTTCCCCSHHHHHHS--SCCCHHHHHHHHHT
T ss_pred CCCcCCchHHHHHhC--CCCCHHHHHHHHhc
Confidence 234568899999999 66799999999875
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=288.35 Aligned_cols=270 Identities=17% Similarity=0.172 Sum_probs=206.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhC---CCeEEEEeCCCCchhhhHHHHHhh-------------hhccCCeEEEEc
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKR---GDGVLGLDNFNNYYETSLKKARKG-------------LLERAGVFVIDA 138 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~ 138 (424)
...++|+||||||+||||++|+++|+++ |++|++++|+.+..... ...... .....++.++.+
T Consensus 69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 147 (478)
T 4dqv_A 69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDAR-RRLEKTFDSGDPELLRHFKELAADRLEVVAG 147 (478)
T ss_dssp CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHH-HHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHH-HHHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence 4567899999999999999999999999 99999999987643221 111111 112368999999
Q ss_pred cCC------CHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 139 DIN------DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 139 Dl~------d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
|++ |.+.+.++++++ |+||||||.... .+++..+++|+.|+.+++++|++.+++ +|||+||.++|+.
T Consensus 148 Dl~~~~~gld~~~~~~~~~~~--D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~~V~iSS~~v~~~ 220 (478)
T 4dqv_A 148 DKSEPDLGLDQPMWRRLAETV--DLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLK-PFTYVSTADVGAA 220 (478)
T ss_dssp CTTSGGGGCCHHHHHHHHHHC--CEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCC-CEEEEEEGGGGTT
T ss_pred ECCCcccCCCHHHHHHHHcCC--CEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEEeehhhcCc
Confidence 998 777899999866 999999998653 455678999999999999999998875 9999999999998
Q ss_pred CCCCCCCCCCCCCCCC-----------ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC-----CCCcHHHHH
Q 042406 213 NKKVPFSEKDRTDQPA-----------SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR-----PDMAYFFFT 276 (424)
Q Consensus 213 ~~~~~~~e~~~~~~~~-----------~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~-----~~~~~~~~~ 276 (424)
....++.|+++. .+. +.|+.||+++|.++++++++.|++++++|||+|||+... ...++..++
T Consensus 221 ~~~~~~~E~~~~-~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~ 299 (478)
T 4dqv_A 221 IEPSAFTEDADI-RVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMV 299 (478)
T ss_dssp SCTTTCCSSSCH-HHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHH
T ss_pred cCCCCcCCcccc-cccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHH
Confidence 777778877643 222 449999999999999999888999999999999998541 122344455
Q ss_pred HHHHcCCceeE-Eec-CCC---CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc--ccHHHH
Q 042406 277 RDIIRGKRITV-YEA-PDG---ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP--VPVSRL 349 (424)
Q Consensus 277 ~~~~~~~~~~~-~~~-~~~---~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~s~~el 349 (424)
......+..+. +.. .++ ++..++|+|++|+|++++.++........ ..+++||++++++ +|+.|+
T Consensus 300 ~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~--------~~~~~ynv~~~~~~~~s~~el 371 (478)
T 4dqv_A 300 LSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSL--------AGFATYHVMNPHDDGIGLDEY 371 (478)
T ss_dssp HHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCC--------CSEEEEEESCCCCSSCSHHHH
T ss_pred HHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCC--------CCCceEEecCCCCCCcCHHHH
Confidence 44444332221 110 011 26788999999999999999876321111 3348999999888 999999
Q ss_pred HHHHHHHhCcccc
Q 042406 350 VSLLEKILKVKAE 362 (424)
Q Consensus 350 ~~~i~~~~g~~~~ 362 (424)
++.+.+. |.+..
T Consensus 372 ~~~l~~~-g~~~~ 383 (478)
T 4dqv_A 372 VDWLIEA-GYPIR 383 (478)
T ss_dssp HHHHHHT-TCSCE
T ss_pred HHHHHHc-CCCcc
Confidence 9999995 66543
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=292.35 Aligned_cols=310 Identities=18% Similarity=0.207 Sum_probs=225.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHH---HH------hhhhccCCeEEEEccCCCHHHHH
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKK---AR------KGLLERAGVFVIDADINDKSLLD 147 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~---~~------~~~~~~~~v~~~~~Dl~d~~~v~ 147 (424)
.++|+|||||||||||++|+++|+++|++|++++|+.+........ .. .......++.++.+|++|.+.+.
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 227 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 227 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC
Confidence 4568999999999999999999999999999999987632211110 00 01123468999999999988777
Q ss_pred HHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC-----CCCCCCCCCC
Q 042406 148 KIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV-----NKKVPFSEKD 222 (424)
Q Consensus 148 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~-----~~~~~~~e~~ 222 (424)
.+. ++|+||||||.... ..+++..+++|+.|+.+++++|++ +. ++|||+||.++ |. ....+++|++
T Consensus 228 -~~~--~~D~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~-~~-~~~v~iSS~~v-G~~~~~~~~~~~~~E~~ 298 (508)
T 4f6l_B 228 -LPE--NMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HH-ARLIYVSTISV-GTYFDIDTEDVTFSEAD 298 (508)
T ss_dssp -CSS--CCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHT-TT-CEEEEEEESCT-TSEECTTCSCCEECTTC
T ss_pred -Ccc--CCCEEEECCceecC---CCCHHHHhhhHHHHHHHHHHHHHh-CC-CcEEEeCChhh-ccCCccCCcCccccccc
Confidence 444 56999999998642 345577889999999999999998 44 49999999999 43 2345677776
Q ss_pred CC--CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC-------CcHHHHHHHHHcCCceeEEecCCC
Q 042406 223 RT--DQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD-------MAYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 223 ~~--~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
+. ..+.+.|+.+|+++|.+++.+.+ .|++++++||+.|||+..... ..+..++..+..+..++. +.
T Consensus 299 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~ 373 (508)
T 4f6l_B 299 VYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV----SM 373 (508)
T ss_dssp SCSSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET----TG
T ss_pred ccccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC----Cc
Confidence 52 24679999999999999999865 599999999999999976432 235567777766665544 34
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccccccc------
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP------ 367 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~------ 367 (424)
++..++|+|++|+|++++.++..+. .+++||+++++++++.|+++.+.+.. .+ ....+
T Consensus 374 g~~~~~~v~v~DvA~ai~~~~~~~~-------------~~~~~nl~~~~~~s~~el~~~i~~~~-~~--~~~~~~w~~~l 437 (508)
T 4f6l_B 374 AEMPVDFSFVDTTARQIVALAQVNT-------------PQIIYHVLSPNKMPVKSLLECVKRKE-IE--LVSDESFNEIL 437 (508)
T ss_dssp GGSEEECEEHHHHHHHHHHHTTBCC-------------SCSEEEESCSCEEEHHHHHHHHHSSC-CE--EECHHHHHHHH
T ss_pred cCceEEEEcHHHHHHHHHHHHhCCC-------------CCCEEEeCCCCCCCHHHHHHHHHHcC-Cc--ccCHHHHHHHH
Confidence 6889999999999999999998754 12899999999999999999999754 11 11000
Q ss_pred -CC----------CCCCcccccCChHHHH---hHcCCcccCCHHHHHHHHHHHHHHHhccCCC
Q 042406 368 -LP----------RNGDVQFTHANISLAQ---RELGYMPTTDLETGLKKFVRWYLSYYNSASA 416 (424)
Q Consensus 368 -~~----------~~~~~~~~~~d~s~~~---~~LG~~p~~~l~~~l~~~v~~~~~~~~~~~~ 416 (424)
.. .........+|+++.. +.+||.+....++.++++++|+++.+++.+.
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~ 500 (508)
T 4f6l_B 438 QKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNKAAA 500 (508)
T ss_dssp HTTCCHHHHHHHHTGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHC----
T ss_pred HhcCCccchhcccccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 00 0001113456766655 5589987755688999999999998875443
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=265.69 Aligned_cols=261 Identities=16% Similarity=0.125 Sum_probs=197.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhC--CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKR--GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+||||+||||++++++|+++ |++|++++|+.+.... ....+++++.+|++|.+++.++++++ |+|
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~D~~d~~~~~~~~~~~--d~v 69 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQA---------LAAQGITVRQADYGDEAALTSALQGV--EKL 69 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHH---------HHHTTCEEEECCTTCHHHHHHHTTTC--SEE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhh---------hhcCCCeEEEcCCCCHHHHHHHHhCC--CEE
Confidence 4899999999999999999999 9999999997653221 11246889999999999999999976 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
||+|+... ..|+.++.+++++|++.+++ +||++||.++|. .+ ..|+.+|.++
T Consensus 70 i~~a~~~~------------~~~~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~--------------~~-~~y~~sK~~~ 121 (286)
T 2zcu_A 70 LLISSSEV------------GQRAPQHRNVINAAKAAGVK-FIAYTSLLHADT--------------SP-LGLADEHIET 121 (286)
T ss_dssp EECC--------------------CHHHHHHHHHHHHTCC-EEEEEEETTTTT--------------CC-STTHHHHHHH
T ss_pred EEeCCCCc------------hHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCC--------------Cc-chhHHHHHHH
Confidence 99998521 14788999999999998875 999999998872 11 4799999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
|.++++ .+++++++||+.++++... ++..+..+..+. + +.++..++++|++|+|++++.+++.+.
T Consensus 122 e~~~~~----~~~~~~ilrp~~~~~~~~~-------~~~~~~~~~~~~-~---~~~~~~~~~i~~~Dva~~~~~~~~~~~ 186 (286)
T 2zcu_A 122 EKMLAD----SGIVYTLLRNGWYSENYLA-------SAPAALEHGVFI-G---AAGDGKIASATRADYAAAAARVISEAG 186 (286)
T ss_dssp HHHHHH----HCSEEEEEEECCBHHHHHT-------THHHHHHHTEEE-E---SCTTCCBCCBCHHHHHHHHHHHHHSSS
T ss_pred HHHHHH----cCCCeEEEeChHHhhhhHH-------HhHHhhcCCcee-c---cCCCCccccccHHHHHHHHHHHhcCCC
Confidence 998865 4999999999887765211 122333334443 3 456788999999999999999998653
Q ss_pred ccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCC-------CCCc----------------c
Q 042406 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPR-------NGDV----------------Q 375 (424)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~-------~~~~----------------~ 375 (424)
. .+++||+++++.+|+.|+++.+.+.+|.+.++...|... .+.. .
T Consensus 187 ~------------~g~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (286)
T 2zcu_A 187 H------------EGKVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKG 254 (286)
T ss_dssp C------------TTCEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTT
T ss_pred C------------CCceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 1 237999999989999999999999999876654433210 0000 1
Q ss_pred cccCChHHHHhHcCCcccCCHHHHHHHHHHHHH
Q 042406 376 FTHANISLAQRELGYMPTTDLETGLKKFVRWYL 408 (424)
Q Consensus 376 ~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~ 408 (424)
....|++++++.||| |.++++|+|+++++||.
T Consensus 255 ~~~~~~~~~~~~lg~-~~~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 255 GLFDDSKTLSKLIGH-PTTTLAESVSHLFNVNN 286 (286)
T ss_dssp TTCCCCCHHHHHHTS-CCCCHHHHHHGGGC---
T ss_pred CCccCchHHHHHhCc-CCCCHHHHHHHHHhhcC
Confidence 245688999999997 44599999999999873
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=259.62 Aligned_cols=236 Identities=21% Similarity=0.241 Sum_probs=193.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+||||||+||||++|+++|+++|++|++++|+..... ..++.++.+|++|.+++.++++++ |+|
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~--d~v 67 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA------------EAHEEIVACDLADAQAVHDLVKDC--DGI 67 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC------------CTTEEECCCCTTCHHHHHHHHTTC--SEE
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc------------CCCccEEEccCCCHHHHHHHHcCC--CEE
Confidence 358999999999999999999999999999999654210 136789999999999999999965 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCC-CCCCCCCCCCCCCCCChHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVN-KKVPFSEKDRTDQPASLYAATKKA 237 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~-~~~~~~e~~~~~~~~~~Y~~sK~~ 237 (424)
|||||... ..+.+..+++|+.++.++++++++.+++ +||++||.++|+.. ...+++|+++. .|.+.|+.+|++
T Consensus 68 i~~a~~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~~~~~~~~~E~~~~-~~~~~Y~~sK~~ 141 (267)
T 3ay3_A 68 IHLGGVSV----ERPWNDILQANIIGAYNLYEAARNLGKP-RIVFASSNHTIGYYPRTTRIDTEVPR-RPDSLYGLSKCF 141 (267)
T ss_dssp EECCSCCS----CCCHHHHHHHTHHHHHHHHHHHHHTTCC-EEEEEEEGGGSTTSBTTSCBCTTSCC-CCCSHHHHHHHH
T ss_pred EECCcCCC----CCCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCHHHhCCCCCCCCCCCCCCC-CCCChHHHHHHH
Confidence 99999752 3456789999999999999999998865 99999999999864 34678888766 778999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 238 ~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
+|.+++.+.+..+++++++||+.+|+... .++..++|+|++|+|++++.+++.+
T Consensus 142 ~e~~~~~~~~~~gi~~~~lrp~~v~~~~~--------------------------~~~~~~~~~~~~dva~~~~~~~~~~ 195 (267)
T 3ay3_A 142 GEDLASLYYHKFDIETLNIRIGSCFPKPK--------------------------DARMMATWLSVDDFMRLMKRAFVAP 195 (267)
T ss_dssp HHHHHHHHHHTTCCCEEEEEECBCSSSCC--------------------------SHHHHHHBCCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHcCCCEEEEeceeecCCCC--------------------------CCCeeeccccHHHHHHHHHHHHhCC
Confidence 99999998887899999999999994210 1234678999999999999999875
Q ss_pred cccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCcccCCHH
Q 042406 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLE 397 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p~~~l~ 397 (424)
.. .+++|++.++. .....|..++ +.|||+|+++++
T Consensus 196 ~~------------~~~~~~~~~~~--------------------------------~~~~~d~~~~-~~lg~~p~~~~~ 230 (267)
T 3ay3_A 196 KL------------GCTVVYGASAN--------------------------------TESWWDNDKS-AFLGWVPQDSSE 230 (267)
T ss_dssp CC------------CEEEEEECCSC--------------------------------SSCCBCCGGG-GGGCCCCCCCGG
T ss_pred CC------------CceeEecCCCc--------------------------------cccccCHHHH-HHcCCCCCCCHH
Confidence 42 12677775432 1134667777 889999999999
Q ss_pred HHHHHHHH
Q 042406 398 TGLKKFVR 405 (424)
Q Consensus 398 ~~l~~~v~ 405 (424)
++++++.+
T Consensus 231 ~~~~~~~~ 238 (267)
T 3ay3_A 231 IWREEIEQ 238 (267)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHh
Confidence 99987754
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-34 Score=277.66 Aligned_cols=251 Identities=23% Similarity=0.385 Sum_probs=207.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
|+||||||+||||++|+++|+++|+ +|++++|+ .|.+++.++++++ |+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~----------------------------~d~~~l~~~~~~~--d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ----------------------------TKEEELESALLKA--DFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT----------------------------CCHHHHHHHHHHC--SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC----------------------------CCHHHHHHHhccC--CEE
Confidence 6899999999999999999999998 88888762 7889999999976 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
||+||.... .+++..+++|+.++.+++++|++.+++++||++||.++|+ .+.|+.+|+++
T Consensus 51 ih~a~~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~----------------~~~Y~~sK~~~ 110 (369)
T 3st7_A 51 VHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ----------------DNPYGESKLQG 110 (369)
T ss_dssp EECCCSBCT----TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS----------------CSHHHHHHHHH
T ss_pred EECCcCCCC----CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC----------------CCCchHHHHHH
Confidence 999997653 3556678899999999999999998766999999999986 37899999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCC--CCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhh
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYGPWGRP--DMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 316 (424)
|.++++++++.+++++++||+++|||+..+ +.+++.++..+..+.++.+ ++++..++++|++|+|++++.+++.
T Consensus 111 E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~v~Dva~~~~~~l~~ 186 (369)
T 3st7_A 111 EQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQV----NDRNVELTLNYVDDIVAEIKRAIEG 186 (369)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCC----SCTTCEEEEEEHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEe----cCCCeEEEEEEHHHHHHHHHHHHhC
Confidence 999999999889999999999999998765 3577888889999988776 4678899999999999999999987
Q ss_pred ccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCcccCCH
Q 042406 317 AKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDL 396 (424)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p~~~l 396 (424)
+... .+++||+++++.+|+.|+++.+.+.+|.+......+.+ + ...-......|||.|..++
T Consensus 187 ~~~~-----------~~~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~---~----~~~~~l~~~~l~~~p~~~~ 248 (369)
T 3st7_A 187 TPTI-----------ENGVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLD---N----LFEKDLYSTYLSYLPSTDF 248 (369)
T ss_dssp CCCE-----------ETTEECCSCCEEEEHHHHHHHHHHHHHHHHHTCCCCTT---S----HHHHHHHHHHHHTSCTTCS
T ss_pred Cccc-----------CCceEEeCCCCceeHHHHHHHHHHHhCCCcccccCCCC---C----HHHHHHHHHHhcccCCcce
Confidence 6531 13899999999999999999999999987544322211 0 0111333445899988776
Q ss_pred HHHHHH
Q 042406 397 ETGLKK 402 (424)
Q Consensus 397 ~~~l~~ 402 (424)
+++++.
T Consensus 249 ~~~l~~ 254 (369)
T 3st7_A 249 SYPLLM 254 (369)
T ss_dssp CCCCCE
T ss_pred eechhh
Confidence 655543
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=255.14 Aligned_cols=224 Identities=13% Similarity=0.114 Sum_probs=175.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+|+||||+||||++++++|+++|++|++++|+.+.... ...+++++.+|++|.+++.++++++ |+|
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~~Dl~d~~~~~~~~~~~--d~v 71 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI----------ENEHLKVKKADVSSLDEVCEVCKGA--DAV 71 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCC----------CCTTEEEECCCTTCHHHHHHHHTTC--SEE
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchh----------ccCceEEEEecCCCHHHHHHHhcCC--CEE
Confidence 5899999999999999999999999999999996543211 1268999999999999999999966 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
||+||... . ....+++|+.++.+++++|++.+++ +||++||.++|+..... ..++++. .|.+.|+.+|.++
T Consensus 72 i~~a~~~~-----~-~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~~~~~~~-~~~~~~~-~p~~~Y~~sK~~~ 142 (227)
T 3dhn_A 72 ISAFNPGW-----N-NPDIYDETIKVYLTIIDGVKKAGVN-RFLMVGGAGSLFIAPGL-RLMDSGE-VPENILPGVKALG 142 (227)
T ss_dssp EECCCC------------CCSHHHHHHHHHHHHHHHTTCS-EEEEECCSTTSEEETTE-EGGGTTC-SCGGGHHHHHHHH
T ss_pred EEeCcCCC-----C-ChhHHHHHHHHHHHHHHHHHHhCCC-EEEEeCChhhccCCCCC-ccccCCc-chHHHHHHHHHHH
Confidence 99998642 1 2237889999999999999999876 99999999987654332 2333333 6778999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
|.+++.++++.+++++++||+.+|||+.....+. .+....+. .++. ++|+|++|+|++++.+++++.
T Consensus 143 e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~--------~~~~~~~~----~~~~-~~~i~~~Dva~ai~~~l~~~~ 209 (227)
T 3dhn_A 143 EFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRYR--------LGKDDMIV----DIVG-NSHISVEDYAAAMIDELEHPK 209 (227)
T ss_dssp HHHHHTGGGCCSSEEEEEECCSEEESCCCCCCCE--------EESSBCCC----CTTS-CCEEEHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhccCccEEEEeCCcccCCCcccccee--------ecCCCccc----CCCC-CcEEeHHHHHHHHHHHHhCcc
Confidence 9999999877899999999999999976543211 22222222 1222 899999999999999999876
Q ss_pred ccCCCCCCCCCCCCcceEEcCCCCcccHHH
Q 042406 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSR 348 (424)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e 348 (424)
..+++|+++++++.++++
T Consensus 210 ------------~~g~~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 210 ------------HHQERFTIGYLEHHHHHH 227 (227)
T ss_dssp ------------CCSEEEEEECCSCCC---
T ss_pred ------------ccCcEEEEEeehhcccCC
Confidence 344999999999988753
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=248.67 Aligned_cols=211 Identities=19% Similarity=0.185 Sum_probs=178.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++|+||||||+||||++|+++|+++|++|++++|+..... ..+++++.+|++|.+++.++++++ |+
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~--D~ 67 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA------------GPNEECVQCDLADANAVNAMVAGC--DG 67 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC------------CTTEEEEECCTTCHHHHHHHHTTC--SE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc------------CCCCEEEEcCCCCHHHHHHHHcCC--CE
Confidence 4678999999999999999999999999999999764321 357899999999999999999966 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC-CCCCCCCCCCCCCCCCChHHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV-NKKVPFSEKDRTDQPASLYAATKK 236 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~-~~~~~~~e~~~~~~~~~~Y~~sK~ 236 (424)
||||||.. ...+.+..+++|+.|+.++++++++.+.+ +||++||.++||. ....+++|+.+. .+.+.|+.||+
T Consensus 68 vi~~Ag~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~g~~~~~~~~~e~~~~-~~~~~Y~~sK~ 141 (267)
T 3rft_A 68 IVHLGGIS----VEKPFEQILQGNIIGLYNLYEAARAHGQP-RIVFASSNHTIGYYPQTERLGPDVPA-RPDGLYGVSKC 141 (267)
T ss_dssp EEECCSCC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGTTSBTTSCBCTTSCC-CCCSHHHHHHH
T ss_pred EEECCCCc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcchHHhCCCCCCCCCCCCCCC-CCCChHHHHHH
Confidence 99999984 24567889999999999999999998865 9999999999984 344567776655 78899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhh
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 316 (424)
++|.+++.+++++++++++|||+.|||+. .+++..++|++++|+++++..+++.
T Consensus 142 ~~e~~~~~~a~~~g~~~~~vr~~~v~~~~--------------------------~~~~~~~~~~~~~d~a~~~~~~~~~ 195 (267)
T 3rft_A 142 FGENLARMYFDKFGQETALVRIGSCTPEP--------------------------NNYRMLSTWFSHDDFVSLIEAVFRA 195 (267)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECBCSSSC--------------------------CSTTHHHHBCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCeEEEEEeecccCCC--------------------------CCCCceeeEEcHHHHHHHHHHHHhC
Confidence 99999999998899999999999999872 2345667899999999999999887
Q ss_pred ccccCCCCCCCCCCCCcceEEcCCCCcccH
Q 042406 317 AKKSTGSGGKKKGPAEFRIFNLGNTTPVPV 346 (424)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 346 (424)
+... +.++++.++++.++
T Consensus 196 ~~~~------------~~~~~~~s~~~~~~ 213 (267)
T 3rft_A 196 PVLG------------CPVVWGASANDAGW 213 (267)
T ss_dssp SCCC------------SCEEEECCCCTTCC
T ss_pred CCCC------------ceEEEEeCCCCCCc
Confidence 6521 25777777664443
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=262.64 Aligned_cols=288 Identities=15% Similarity=0.096 Sum_probs=201.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+++|+||||||||+||++|++.|+++|++|++++|+.+....... ....+...+++++.+|++|.+++.+++++.++|
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~--~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 85 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAK--IFKALEDKGAIIVYGLINEQEAMEKILKEHEID 85 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH--HHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHH--HHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCC
Confidence 446789999999999999999999999999999997633211111 111223468999999999999999999955569
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATK 235 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK 235 (424)
+|||+|+.. |+.++.+++++|++.+ ++ +||+ | +||. +.+|.++. .|.+.|+.+|
T Consensus 86 ~Vi~~a~~~---------------n~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~----~~~e~~~~-~p~~~y~~sK 140 (346)
T 3i6i_A 86 IVVSTVGGE---------------SILDQIALVKAMKAVGTIK-RFLP-S---EFGH----DVNRADPV-EPGLNMYREK 140 (346)
T ss_dssp EEEECCCGG---------------GGGGHHHHHHHHHHHCCCS-EEEC-S---CCSS----CTTTCCCC-TTHHHHHHHH
T ss_pred EEEECCchh---------------hHHHHHHHHHHHHHcCCce-EEee-c---ccCC----CCCccCcC-CCcchHHHHH
Confidence 999999862 7788999999999998 65 7775 4 4553 23343433 5678999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhh
Q 042406 236 KAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315 (424)
Q Consensus 236 ~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 315 (424)
+++|.++++ .|++++++|||.++|..... ... .......+..+.++ ++++..++|+|++|+|++++.++.
T Consensus 141 ~~~e~~l~~----~g~~~tivrpg~~~g~~~~~-~~~--~~~~~~~~~~~~~~---g~g~~~~~~i~~~Dva~~~~~~l~ 210 (346)
T 3i6i_A 141 RRVRQLVEE----SGIPFTYICCNSIASWPYYN-NIH--PSEVLPPTDFFQIY---GDGNVKAYFVAGTDIGKFTMKTVD 210 (346)
T ss_dssp HHHHHHHHH----TTCCBEEEECCEESSCCCSC-C-------CCCCSSCEEEE---TTSCCCEEEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHH----cCCCEEEEEecccccccCcc-ccc--cccccCCCceEEEc---cCCCceEEecCHHHHHHHHHHHHh
Confidence 999998876 49999999999999975332 110 11111245556665 688899999999999999999998
Q ss_pred hccccCCCCCCCCCCCCcceEEcCC-CCcccHHHHHHHHHHHhCcccccccccCCC-------CCCc-------------
Q 042406 316 TAKKSTGSGGKKKGPAEFRIFNLGN-TTPVPVSRLVSLLEKILKVKAETKVLPLPR-------NGDV------------- 374 (424)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~el~~~i~~~~g~~~~~~~~~~~~-------~~~~------------- 374 (424)
.+.. .+++|++++ ++.+|+.|+++.+++.+|.+.+....+... ....
T Consensus 211 ~~~~------------~~~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 278 (346)
T 3i6i_A 211 DVRT------------LNKSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFI 278 (346)
T ss_dssp CGGG------------TTEEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHT
T ss_pred Cccc------------cCeEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhc
Confidence 7642 237899985 588999999999999999887665443210 0000
Q ss_pred --ccccCCh-----HHHHhH-cCCcccCCHHHHHHHHHHHHHHHhccC
Q 042406 375 --QFTHANI-----SLAQRE-LGYMPTTDLETGLKKFVRWYLSYYNSA 414 (424)
Q Consensus 375 --~~~~~d~-----s~~~~~-LG~~p~~~l~~~l~~~v~~~~~~~~~~ 414 (424)
....++. .++... -+++++ +++|.|+++++|++++++..
T Consensus 279 ~g~~~~~~~~~~~~~~~~~~~p~~~~t-~~~e~l~~~~~~~~~~~~~~ 325 (346)
T 3i6i_A 279 KGCQVNFSIDGPEDVEVTTLYPEDSFR-TVEECFGEYIVKMEEKQPTA 325 (346)
T ss_dssp TCTTTSSCCCSTTEEEHHHHSTTCCCC-CHHHHHHHHHCC--------
T ss_pred cCCCcccccCCCCcccHHHhCCCCCcC-cHHHHHHHHHHHhhcccccc
Confidence 0000111 122332 344554 89999999999999876553
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=244.48 Aligned_cols=220 Identities=16% Similarity=0.168 Sum_probs=171.4
Q ss_pred CCCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCe-EEEEccCCCHHHHHHHhh
Q 042406 73 RPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGV-FVIDADINDKSLLDKIFN 151 (424)
Q Consensus 73 ~~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~v~~~~~ 151 (424)
....+++|+|+||||+|+||++++++|+++|++|++++|+.+.... ....++ +++.+|++ +++.+++.
T Consensus 15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~---------~~~~~~~~~~~~Dl~--~~~~~~~~ 83 (236)
T 3e8x_A 15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE---------LRERGASDIVVANLE--EDFSHAFA 83 (236)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHH---------HHHTTCSEEEECCTT--SCCGGGGT
T ss_pred cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHH---------HHhCCCceEEEcccH--HHHHHHHc
Confidence 3456789999999999999999999999999999999997553221 112478 99999999 77778887
Q ss_pred ccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChH
Q 042406 152 VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLY 231 (424)
Q Consensus 152 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y 231 (424)
++ |+||||||... ..+++..+++|+.++.+++++|++.+.+ +||++||.+.+.. +..+ .+...|
T Consensus 84 ~~--D~vi~~ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~-------~~~~--~~~~~Y 147 (236)
T 3e8x_A 84 SI--DAVVFAAGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSSVGTVDP-------DQGP--MNMRHY 147 (236)
T ss_dssp TC--SEEEECCCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECCTTCSCG-------GGSC--GGGHHH
T ss_pred CC--CEEEECCCCCC----CCCccccchhhHHHHHHHHHHHHHcCCC-EEEEEecCCCCCC-------CCCh--hhhhhH
Confidence 55 99999999754 3567889999999999999999999875 9999999555432 1111 356889
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHH
Q 042406 232 AATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311 (424)
Q Consensus 232 ~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 311 (424)
+.+|.++|.+++ ..|+++++||||.+||+.... .+... ...+..+++++++|+|++++
T Consensus 148 ~~sK~~~e~~~~----~~gi~~~~lrpg~v~~~~~~~---------------~~~~~---~~~~~~~~~i~~~Dva~~~~ 205 (236)
T 3e8x_A 148 LVAKRLADDELK----RSSLDYTIVRPGPLSNEESTG---------------KVTVS---PHFSEITRSITRHDVAKVIA 205 (236)
T ss_dssp HHHHHHHHHHHH----HSSSEEEEEEECSEECSCCCS---------------EEEEE---SSCSCCCCCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HCCCCEEEEeCCcccCCCCCC---------------eEEec---cCCCcccCcEeHHHHHHHHH
Confidence 999999999876 459999999999999985421 12222 23455688999999999999
Q ss_pred HHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHH
Q 042406 312 AGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLE 354 (424)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~ 354 (424)
.+++.+.. .+++|+++++ .+++.|+++.+.
T Consensus 206 ~~~~~~~~------------~g~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 206 ELVDQQHT------------IGKTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp HHTTCGGG------------TTEEEEEEEC-SEEHHHHHHTC-
T ss_pred HHhcCccc------------cCCeEEEeCC-CcCHHHHHHHhc
Confidence 99987652 2389999988 499999998765
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=241.94 Aligned_cols=258 Identities=14% Similarity=0.148 Sum_probs=188.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
|+||||||||+||++++++|+++ |++|++++|+.+... .+...+++++.+|++|++++.++++++ |+|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~---------~~~~~~v~~~~~D~~d~~~l~~~~~~~--d~v 69 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVP---------DDWRGKVSVRQLDYFNQESMVEAFKGM--DTV 69 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSC---------GGGBTTBEEEECCTTCHHHHHHHTTTC--SEE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHH---------HhhhCCCEEEEcCCCCHHHHHHHHhCC--CEE
Confidence 67999999999999999999998 999999999654321 123468999999999999999999976 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
||+|+..... ..|+.++.+++++|++.+++ +||++||.+. ... .+ ..+...+..+
T Consensus 70 i~~a~~~~~~----------~~~~~~~~~l~~aa~~~gv~-~iv~~Ss~~~---~~~----------~~-~~~~~~~~~~ 124 (289)
T 3e48_A 70 VFIPSIIHPS----------FKRIPEVENLVYAAKQSGVA-HIIFIGYYAD---QHN----------NP-FHMSPYFGYA 124 (289)
T ss_dssp EECCCCCCSH----------HHHHHHHHHHHHHHHHTTCC-EEEEEEESCC---STT----------CC-STTHHHHHHH
T ss_pred EEeCCCCccc----------hhhHHHHHHHHHHHHHcCCC-EEEEEcccCC---CCC----------CC-CccchhHHHH
Confidence 9999874321 34889999999999999976 9999999432 111 11 1122222333
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
|..+ ...|++++++||+.+||+. . .++..+....... + +.++..++|++++|+|++++.++..+.
T Consensus 125 e~~~----~~~g~~~~ilrp~~~~~~~------~-~~~~~~~~~~~~~-~---~~g~~~~~~i~~~Dva~~~~~~l~~~~ 189 (289)
T 3e48_A 125 SRLL----STSGIDYTYVRMAMYMDPL------K-PYLPELMNMHKLI-Y---PAGDGRINYITRNDIARGVIAIIKNPD 189 (289)
T ss_dssp HHHH----HHHCCEEEEEEECEESTTH------H-HHHHHHHHHTEEC-C---CCTTCEEEEECHHHHHHHHHHHHHCGG
T ss_pred HHHH----HHcCCCEEEEecccccccc------H-HHHHHHHHCCCEe-c---CCCCceeeeEEHHHHHHHHHHHHcCCC
Confidence 4333 3459999999999999972 1 2333333333332 2 356888999999999999999998865
Q ss_pred ccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCC-------C-CCC------------ccccc
Q 042406 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP-------R-NGD------------VQFTH 378 (424)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~-------~-~~~------------~~~~~ 378 (424)
.. +++||++ ++.+|+.|+++.+.+.+|.+..+...+.. . .+. .....
T Consensus 190 ~~------------g~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~ 256 (289)
T 3e48_A 190 TW------------GKRYLLS-GYSYDMKELAAILSEASGTEIKYEPVSLETFAEMYDEPKGFGALLASMYHAGARGLLD 256 (289)
T ss_dssp GT------------TCEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCCHHHHHHHTCCSTTHHHHHHHHHHHHHTTTTC
T ss_pred cC------------CceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCCHHHHHHHhcCCccHHHHHHHHHHHHHCCCcc
Confidence 32 3899999 99999999999999999988765443311 0 110 01122
Q ss_pred CChHHHHhHcCCcccCCHHHHHHH
Q 042406 379 ANISLAQRELGYMPTTDLETGLKK 402 (424)
Q Consensus 379 ~d~s~~~~~LG~~p~~~l~~~l~~ 402 (424)
.+.+..++.+|+.|+ ++++.+++
T Consensus 257 ~~~~~~~~~~G~~p~-~~~~~~~~ 279 (289)
T 3e48_A 257 QESNDFKQLVNDQPQ-TLQSFLQE 279 (289)
T ss_dssp CCCSHHHHHHSSCCC-CHHHHHHC
T ss_pred ccCchHHHHhCCCCC-CHHHHHHH
Confidence 455667788999888 88876644
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=242.59 Aligned_cols=209 Identities=11% Similarity=0.111 Sum_probs=169.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-HHHHHHHhhccCccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-KSLLDKIFNVVAFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~v~~~~~~~~~d~v 158 (424)
|+|+||||+|+||++++++|+++|++|++++|+.+.... ..+++++++|++| .+++.++++++ |+|
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-----------~~~~~~~~~D~~d~~~~~~~~~~~~--d~v 67 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ-----------YNNVKAVHFDVDWTPEEMAKQLHGM--DAI 67 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC-----------CTTEEEEECCTTSCHHHHHTTTTTC--SEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh-----------cCCceEEEecccCCHHHHHHHHcCC--CEE
Confidence 689999999999999999999999999999996542211 1689999999999 99999999966 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
|||||... ...+++|+.++.+++++|++.+++ +||++||.++++.. ++.| + +..+.+.|+.+|.++
T Consensus 68 i~~ag~~~--------~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~~---~~~e-~-~~~~~~~Y~~sK~~~ 133 (219)
T 3dqp_A 68 INVSGSGG--------KSLLKVDLYGAVKLMQAAEKAEVK-RFILLSTIFSLQPE---KWIG-A-GFDALKDYYIAKHFA 133 (219)
T ss_dssp EECCCCTT--------SSCCCCCCHHHHHHHHHHHHTTCC-EEEEECCTTTTCGG---GCCS-H-HHHHTHHHHHHHHHH
T ss_pred EECCcCCC--------CCcEeEeHHHHHHHHHHHHHhCCC-EEEEECcccccCCC---cccc-c-ccccccHHHHHHHHH
Confidence 99999754 125678999999999999999876 99999998877642 2333 2 224578999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
|.+++ +..++++++|||+.+||+..... +.. ++..+++++++|+|++++.+++++.
T Consensus 134 e~~~~---~~~~i~~~ilrp~~v~g~~~~~~---------------~~~------~~~~~~~i~~~Dva~~i~~~l~~~~ 189 (219)
T 3dqp_A 134 DLYLT---KETNLDYTIIQPGALTEEEATGL---------------IDI------NDEVSASNTIGDVADTIKELVMTDH 189 (219)
T ss_dssp HHHHH---HSCCCEEEEEEECSEECSCCCSE---------------EEE------SSSCCCCEEHHHHHHHHHHHHTCGG
T ss_pred HHHHH---hccCCcEEEEeCceEecCCCCCc---------------ccc------CCCcCCcccHHHHHHHHHHHHhCcc
Confidence 99886 45699999999999999854321 111 2567889999999999999998765
Q ss_pred ccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHH
Q 042406 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSL 352 (424)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~ 352 (424)
. .+++||+++++ .++.|+.+.
T Consensus 190 ~------------~g~~~~i~~g~-~~~~e~~~~ 210 (219)
T 3dqp_A 190 S------------IGKVISMHNGK-TAIKEALES 210 (219)
T ss_dssp G------------TTEEEEEEECS-EEHHHHHHT
T ss_pred c------------cCcEEEeCCCC-ccHHHHHHH
Confidence 2 23899998875 999998764
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-30 Score=238.68 Aligned_cols=254 Identities=15% Similarity=0.089 Sum_probs=187.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|+++||||+|+||++++++|+++|++|++++|+.+..................+.++.+|++|.++++++++.+
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 86 (281)
T 3svt_A 7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVT 86 (281)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999765544443333322111237899999999999999998866
Q ss_pred ----CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCKSSD---PQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~~~---~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||.... ....++.+..+++|+.|+.++++++.... ...+||++||...+...
T Consensus 87 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 158 (281)
T 3svt_A 87 AWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTH-------- 158 (281)
T ss_dssp HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC--------
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCC--------
Confidence 78999999997322 11223346799999999999988765432 12389999998876431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.|+++..........+...+....+ ..
T Consensus 159 ----~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p------------~~ 222 (281)
T 3svt_A 159 ----RWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTP------------LP 222 (281)
T ss_dssp ----TTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHCS------------SS
T ss_pred ----CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcCC------------CC
Confidence 446889999999999999998875 69999999999998743210000112222222222 12
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc-HHHHHHHHHHHhCcccc
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP-VSRLVSLLEKILKVKAE 362 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s-~~el~~~i~~~~g~~~~ 362 (424)
.+.+++|+|++++.++...... ..|++|++.+|...+ ..++.+++.+.++.+..
T Consensus 223 r~~~~~dva~~~~~l~s~~~~~----------itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~ 277 (281)
T 3svt_A 223 RQGEVEDVANMAMFLLSDAASF----------VTGQVINVDGGQMLRRGPDFSAMLEPVFGRDAL 277 (281)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGSCCCCCHHHHHHHHCTTGG
T ss_pred CCCCHHHHHHHHHHHhCcccCC----------CCCCEEEeCCChhcccCCcchhccccccCCccc
Confidence 3678999999999988765432 345899999988777 78899999999887643
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=241.59 Aligned_cols=236 Identities=16% Similarity=0.108 Sum_probs=179.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+|+|+||||+|+||++++++|+++| ++|++++|+.+.... ..+...+++++.+|++|++++.++++++ |+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~-------~~l~~~~~~~~~~D~~d~~~l~~~~~~~--d~ 75 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA-------KELRLQGAEVVQGDQDDQVIMELALNGA--YA 75 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH-------HHHHHTTCEEEECCTTCHHHHHHHHTTC--SE
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH-------HHHHHCCCEEEEecCCCHHHHHHHHhcC--CE
Confidence 5789999999999999999999999 999999997653211 1112357899999999999999999976 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKA 237 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~ 237 (424)
|||+|+.... . ....|+.++.+++++|++.+++ +||++||.++|+.... .+...|+.+|.+
T Consensus 76 vi~~a~~~~~----~----~~~~~~~~~~~~~~aa~~~gv~-~iv~~S~~~~~~~~~~----------~~~~~y~~sK~~ 136 (299)
T 2wm3_A 76 TFIVTNYWES----C----SQEQEVKQGKLLADLARRLGLH-YVVYSGLENIKKLTAG----------RLAAAHFDGKGE 136 (299)
T ss_dssp EEECCCHHHH----T----CHHHHHHHHHHHHHHHHHHTCS-EEEECCCCCHHHHTTT----------SCCCHHHHHHHH
T ss_pred EEEeCCCCcc----c----cchHHHHHHHHHHHHHHHcCCC-EEEEEcCccccccCCC----------cccCchhhHHHH
Confidence 9999985211 0 1356788999999999999876 9999988888763211 234789999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHH-HHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhh
Q 042406 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRD-IIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316 (424)
Q Consensus 238 ~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 316 (424)
+|.++++ .|+++++|||+.+||+.... +... ...+....+ .. ..++..++|+|++|+|++++.++..
T Consensus 137 ~e~~~~~----~gi~~~ilrp~~~~~~~~~~------~~~~~~~~g~~~~~-~~-~~~~~~~~~i~~~Dva~~~~~~l~~ 204 (299)
T 2wm3_A 137 VEEYFRD----IGVPMTSVRLPCYFENLLSH------FLPQKAPDGKSYLL-SL-PTGDVPMDGMSVSDLGPVVLSLLKM 204 (299)
T ss_dssp HHHHHHH----HTCCEEEEECCEEGGGGGTT------TCCEECTTSSSEEE-CC-CCTTSCEEEECGGGHHHHHHHHHHS
T ss_pred HHHHHHH----CCCCEEEEeecHHhhhchhh------cCCcccCCCCEEEE-Ee-cCCCCccceecHHHHHHHHHHHHcC
Confidence 9998875 39999999999999974321 1111 112222121 11 2367788999999999999999986
Q ss_pred ccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccc
Q 042406 317 AKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVL 366 (424)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~ 366 (424)
+... .+++|++++ +.+|+.|+++.+.+.+|.+.++...
T Consensus 205 ~~~~-----------~g~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~~ 242 (299)
T 2wm3_A 205 PEKY-----------VGQNIGLST-CRHTAEEYAALLTKHTRKVVHDAKM 242 (299)
T ss_dssp HHHH-----------TTCEEECCS-EEECHHHHHHHHHHHHSSCEEECCC
T ss_pred hhhh-----------CCeEEEeee-ccCCHHHHHHHHHHHHCCCceeEec
Confidence 5321 127999986 6799999999999999988765443
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=229.92 Aligned_cols=218 Identities=11% Similarity=0.015 Sum_probs=159.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||+|+||++|+++|+++|++|++++|+.+.. ......+++++.+|++|.++ +.+.++ |+||
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~---------~~~~~~~~~~~~~D~~d~~~--~~~~~~--d~vi 67 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA---------ADRLGATVATLVKEPLVLTE--ADLDSV--DAVV 67 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---------HHHTCTTSEEEECCGGGCCH--HHHTTC--SEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccc---------ccccCCCceEEecccccccH--hhcccC--CEEE
Confidence 6799999999999999999999999999999954321 11233689999999999888 777765 9999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC---CCCCCCCCCCCCCChHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKK---VPFSEKDRTDQPASLYAATKK 236 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~---~~~~e~~~~~~~~~~Y~~sK~ 236 (424)
||||.... . ....+|+.++.+++++|++.+ + +||++||++.+..... .+.+++..+ .|.+.|+.+|.
T Consensus 68 ~~ag~~~~---~----~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~sK~ 137 (224)
T 3h2s_A 68 DALSVPWG---S----GRGYLHLDFATHLVSLLRNSD-T-LAVFILGSASLAMPGADHPMILDFPESA-ASQPWYDGALY 137 (224)
T ss_dssp ECCCCCTT---S----SCTHHHHHHHHHHHHTCTTCC-C-EEEEECCGGGSBCTTCSSCGGGGCCGGG-GGSTTHHHHHH
T ss_pred ECCccCCC---c----chhhHHHHHHHHHHHHHHHcC-C-cEEEEecceeeccCCCCccccccCCCCC-ccchhhHHHHH
Confidence 99998521 1 124689999999999999998 4 9999999866543322 123333322 45789999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhh
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 316 (424)
++|.+ ..+.+..++++++|||+.+|||+.... +. .....+. ..+..+++++++|+|++++.++++
T Consensus 138 ~~e~~-~~~~~~~~i~~~ivrp~~v~g~~~~~~-~~-------~~~~~~~------~~~~~~~~i~~~DvA~~~~~~l~~ 202 (224)
T 3h2s_A 138 QYYEY-QFLQMNANVNWIGISPSEAFPSGPATS-YV-------AGKDTLL------VGEDGQSHITTGNMALAILDQLEH 202 (224)
T ss_dssp HHHHH-HHHTTCTTSCEEEEEECSBCCCCCCCC-EE-------EESSBCC------CCTTSCCBCCHHHHHHHHHHHHHS
T ss_pred HHHHH-HHHHhcCCCcEEEEcCccccCCCcccC-ce-------ecccccc------cCCCCCceEeHHHHHHHHHHHhcC
Confidence 99954 555556699999999999999944322 10 1111111 234456899999999999999998
Q ss_pred ccccCCCCCCCCCCCCcceEEcCCCCcccHH
Q 042406 317 AKKSTGSGGKKKGPAEFRIFNLGNTTPVPVS 347 (424)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~ 347 (424)
+. ..+++|++++.+..+..
T Consensus 203 ~~------------~~g~~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 203 PT------------AIRDRIVVRDADLEHHH 221 (224)
T ss_dssp CC------------CTTSEEEEEECC-----
T ss_pred cc------------ccCCEEEEecCcchhcc
Confidence 75 23489999987655544
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=233.53 Aligned_cols=233 Identities=18% Similarity=0.161 Sum_probs=173.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhC--CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKR--GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
+++|+|+||||+|+||++++++|+++ |++|++++|+.+.. ... ..++.++.+|++|.+++.++++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~---------~~~-~~~~~~~~~D~~d~~~~~~~~~~~- 70 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK---------EKI-GGEADVFIGDITDADSINPAFQGI- 70 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHH---------HHT-TCCTTEEECCTTSHHHHHHHHTTC-
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCch---------hhc-CCCeeEEEecCCCHHHHHHHHcCC-
Confidence 45789999999999999999999999 89999999953211 111 357889999999999999999966
Q ss_pred ccEEEEcccccCchh-------------hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRY-------------AMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~-------------~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
|+||||||...... ..++....+++|+.++.++++++++.+.+ +||++||.+++.... +..
T Consensus 71 -d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~~~~~--~~~-- 144 (253)
T 1xq6_A 71 -DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVGSMGGTNPDH--PLN-- 144 (253)
T ss_dssp -SEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEEETTTTCTTC--GGG--
T ss_pred -CEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEcCccCCCCCC--ccc--
Confidence 99999999754211 11122357899999999999999998875 999999988763211 000
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
+ ...+.|+.+|+++|.+++. .|+++++||||.+||+........ .+....++ ....+++
T Consensus 145 --~-~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~~~~--------~~~~~~~~------~~~~~~~ 203 (253)
T 1xq6_A 145 --K-LGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVRELL--------VGKDDELL------QTDTKTV 203 (253)
T ss_dssp --G-GGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSSCEE--------EESTTGGG------GSSCCEE
T ss_pred --c-ccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchhhhh--------ccCCcCCc------CCCCcEE
Confidence 0 1124588899999998764 599999999999999864321100 00000111 1134699
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC---cccHHHHHHHHHHHhCc
Q 042406 302 YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT---PVPVSRLVSLLEKILKV 359 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~s~~el~~~i~~~~g~ 359 (424)
+++|+|++++.+++.+.. .+++||+++++ ++|+.|+++.+.+.+|+
T Consensus 204 ~~~Dva~~~~~~~~~~~~------------~g~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 204 PRADVAEVCIQALLFEEA------------KNKAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp EHHHHHHHHHHHTTCGGG------------TTEEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred cHHHHHHHHHHHHcCccc------------cCCEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 999999999999987542 23799999864 59999999999998875
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=228.35 Aligned_cols=218 Identities=13% Similarity=0.173 Sum_probs=144.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|+||||+|+||++|+++|+++|++|++++|+.+.... .. .+++++.+|++|.++ +.+.++ |+||
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~---------~~-~~~~~~~~D~~d~~~--~~~~~~--d~vi 66 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ---------TH-KDINILQKDIFDLTL--SDLSDQ--NVVV 66 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH---------HC-SSSEEEECCGGGCCH--HHHTTC--SEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh---------cc-CCCeEEeccccChhh--hhhcCC--CEEE
Confidence 689999999999999999999999999999996532111 11 578999999999888 777765 9999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC-CCCCCCCCCCCCCChHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKK-VPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~-~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
||||.... ...+|+.++.+++++|++.+.+ ++|++||.++|..... .+..|+.+. .|.+.|+.+|.++
T Consensus 67 ~~ag~~~~---------~~~~~~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~~~-~~~~~y~~~k~~~ 135 (221)
T 3ew7_A 67 DAYGISPD---------EAEKHVTSLDHLISVLNGTVSP-RLLVVGGAASLQIDEDGNTLLESKGL-REAPYYPTARAQA 135 (221)
T ss_dssp ECCCSSTT---------TTTSHHHHHHHHHHHHCSCCSS-EEEEECCCC--------------------CCCSCCHHHHH
T ss_pred ECCcCCcc---------ccchHHHHHHHHHHHHHhcCCc-eEEEEecceEEEcCCCCccccccCCC-CCHHHHHHHHHHH
Confidence 99997431 1356999999999999998765 9999999877654332 234444433 5678899999999
Q ss_pred HHHHHHHHH-HhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 239 EAIAHAYNH-IYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 239 e~~~~~~~~-~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
|.+ ..+.. ..++++++|||+.+|||+..... + ...+..+.+. +.+ .++++++|+|++++.+++++
T Consensus 136 e~~-~~~~~~~~gi~~~ivrp~~v~g~~~~~~~----~---~~~~~~~~~~---~~~---~~~i~~~Dva~~~~~~l~~~ 201 (221)
T 3ew7_A 136 KQL-EHLKSHQAEFSWTYISPSAMFEPGERTGD----Y---QIGKDHLLFG---SDG---NSFISMEDYAIAVLDEIERP 201 (221)
T ss_dssp HHH-HHHHTTTTTSCEEEEECSSCCCCC----------------------------------CCCHHHHHHHHHHHHHSC
T ss_pred HHH-HHHHhhccCccEEEEeCcceecCCCccCc----e---Eeccccceec---CCC---CceEeHHHHHHHHHHHHhCc
Confidence 986 34443 56999999999999998432211 1 1122333332 222 26999999999999999987
Q ss_pred cccCCCCCCCCCCCCcceEEcCCCCcccHHH
Q 042406 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSR 348 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e 348 (424)
. ..+++||++++.+.+..|
T Consensus 202 ~------------~~g~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 202 N------------HLNEHFTVAGKLEHHHHH 220 (221)
T ss_dssp S------------CTTSEEECCC--------
T ss_pred c------------ccCCEEEECCCCcccccc
Confidence 5 234899999988777654
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=231.28 Aligned_cols=246 Identities=11% Similarity=0.111 Sum_probs=182.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++|+|+||||+|+||++++++|+++|++|++++|+.+....... +.....++.++.+|++|.++++++++.+
T Consensus 12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 87 (278)
T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCN----NIGSPDVISFVHCDVTKDEDVRNLVDTTI 87 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HHCCTTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHH----HhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999996433222111 1111237899999999999999998754
Q ss_pred ----CccEEEEcccccCch------hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR------YAMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~------~~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||..... ...++.+..+++|+.++.++++++.+. +. ++||++||...|....
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~~----- 161 (278)
T 2bgk_A 88 AKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKK-GSIVFTASISSFTAGE----- 161 (278)
T ss_dssp HHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTC-EEEEEECCGGGTCCCT-----
T ss_pred HHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-CeEEEEeeccccCCCC-----
Confidence 679999999975421 112334678999999999998887653 43 3999999998876321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-cHHHHHHHHHcCCceeEEecCCCCc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDM-AYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
.+...|+.||++.|.+++.++.+ .|+++++||||.|+|+...... ........+....+ .
T Consensus 162 ------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~----------~ 225 (278)
T 2bgk_A 162 ------GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAA----------N 225 (278)
T ss_dssp ------TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTC----------S
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhccc----------c
Confidence 24578999999999999999876 4899999999999998653211 01222222222111 1
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHH
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKI 356 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~ 356 (424)
....+++++|+|++++.++...... ..|++|++.+|..+++.|+++.+.+.
T Consensus 226 ~~~~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~~~~~~e~~~~i~~~ 276 (278)
T 2bgk_A 226 LKGTLLRAEDVADAVAYLAGDESKY----------VSGLNLVIDGGYTRTNPAFPTALKHG 276 (278)
T ss_dssp SCSCCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGCCTHHHHHSCSC
T ss_pred cccccCCHHHHHHHHHHHcCccccc----------CCCCEEEECCcccccCCccchhhhhh
Confidence 1235899999999999998754321 33489999999999999999987654
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=233.86 Aligned_cols=245 Identities=17% Similarity=0.091 Sum_probs=178.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|++|||||+||||++++++|+++|++|++++|+.+........ ...++.++.+|++|.++++++++.+
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAA------YPDRAEAISLDVTDGERIDVVAADVLAR 76 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH------CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh------ccCCceEEEeeCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999976544332211 1357899999999999999998865
Q ss_pred --CccEEEEcccccCch----hhccChHHHHHHHHHH----HHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAG----FVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g----~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||..... ...++.+..+++|+.| +..+++.+++.+.+ +||++||...+..
T Consensus 77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~----------- 144 (281)
T 3m1a_A 77 YGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSG-SVVNISSFGGQLS----------- 144 (281)
T ss_dssp HSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTCC-----------
T ss_pred CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEEcCccccCC-----------
Confidence 789999999985432 2233446789999999 55556666666654 9999999877642
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC-----CcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPD-----MAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
..+.+.|++||++.|.+++.++.+ .|+++++|+||.|+++..... .....+........... ...
T Consensus 145 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 217 (281)
T 3m1a_A 145 -FAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLV------QGS 217 (281)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHH------HC-
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHH------hhc
Confidence 145689999999999999999887 589999999999988753211 00111111111111110 011
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKV 359 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~ 359 (424)
....+.+++|+|++++.+++.+.. +..|+++++....+.+....+.+.++.
T Consensus 218 ~~~~~~~~~dva~a~~~~~~~~~~-------------~~~~~l~s~~~~~i~g~~~~i~~~~~~ 268 (281)
T 3m1a_A 218 DGSQPGDPAKAAAAIRLALDTEKT-------------PLRLALGGDAVDFLTGHLDSVRAELTE 268 (281)
T ss_dssp ----CBCHHHHHHHHHHHHHSSSC-------------CSEEEESHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCC-------------CeEEecCchHHHHHHHHHHHHHHHHHH
Confidence 223578899999999999987642 268999988877888888888777654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=226.37 Aligned_cols=232 Identities=15% Similarity=0.162 Sum_probs=173.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+|+||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 8 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 84 (255)
T 1fmc_A 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHH---hCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999975433322222111 2357889999999999999988743
Q ss_pred ---CccEEEEcccccCch---hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR---YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~---~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||..... ...++.+..+++|+.++.++++++. +.+.+ +||++||...+...
T Consensus 85 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~---------- 153 (255)
T 1fmc_A 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGG-VILTITSMAAENKN---------- 153 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTCCC----------
T ss_pred hcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcchhhcCCC----------
Confidence 679999999986532 1233446789999999999888774 34443 99999998887531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.+...|+.||.+.|.+++.++.++ |++++++|||.++++..... ..+.+...+..+.+. ..+
T Consensus 154 --~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~------------~~~ 218 (255)
T 1fmc_A 154 --INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV-ITPEIEQKMLQHTPI------------RRL 218 (255)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT-CCHHHHHHHHHTCSS------------CSC
T ss_pred --CCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhc-cChHHHHHHHhcCCc------------ccC
Confidence 456789999999999999998775 89999999999998743211 122333444443322 237
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccH
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPV 346 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 346 (424)
++++|+|++++.++...... ..|++|++++|...|+
T Consensus 219 ~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 219 GQPQDIANAALFLCSPAASW----------VSGQILTVSGGGVQEL 254 (255)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTSCCCC
T ss_pred CCHHHHHHHHHHHhCCcccc----------CCCcEEEECCceeccC
Confidence 89999999999988764321 2348999999887764
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=222.65 Aligned_cols=226 Identities=15% Similarity=0.063 Sum_probs=173.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++|+++||||+|+||++++++|+++|++|++++|+.+......... ..++.++.+|++|.++++++++.+
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV------GRGAVHHVVDLTNEVSVRALIDFTI 80 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH------CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh------CCCeEEEECCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999876554433222 457889999999999999998865
Q ss_pred ----CccEEEEcccccCc------hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGV------RYAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||.... ....++.+..+++|+.|+.++++++ ++.+.+ +||++||...+...
T Consensus 81 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~~~------ 153 (271)
T 3tzq_B 81 DTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGG-AIVNISSATAHAAY------ 153 (271)
T ss_dssp HHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE-EEEEECCGGGTSBC------
T ss_pred HHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEECCHHHcCCC------
Confidence 67999999998632 1123334679999999999998887 555544 99999998776431
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.+...|++||++.+.+++.++.+ +|+++++|+||.|++|...... ...+...+....+.
T Consensus 154 ------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~-~~~~~~~~~~~~~~----------- 215 (271)
T 3tzq_B 154 ------DMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGL-PQPIVDIFATHHLA----------- 215 (271)
T ss_dssp ------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC----CHHHHHHHHTTSTT-----------
T ss_pred ------CCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccC-CHHHHHHHHhcCCC-----------
Confidence 44578999999999999999987 5899999999999998654221 12233333332221
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+.+.+|+|++++.++...... ..|+++++.+|.
T Consensus 216 -~r~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~ 250 (271)
T 3tzq_B 216 -GRIGEPHEIAELVCFLASDRAAF----------ITGQVIAADSGL 250 (271)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred -CCCcCHHHHHHHHHHHhCcccCC----------cCCCEEEECCCc
Confidence 23678999999999988765432 445899999884
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=233.58 Aligned_cols=250 Identities=12% Similarity=0.078 Sum_probs=182.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|+|+||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|++|.++++++++.+
T Consensus 22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (302)
T 1w6u_A 22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISS--QTGNKVHAIQCDVRDPDMVQNTVSELI 99 (302)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hcCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999976443332222211 11457899999999999999988876
Q ss_pred ----CccEEEEcccccCc----hhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGV----RYAMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||.... ....++.+..+++|+.|+.++++++.+. ....+||++||...+..
T Consensus 100 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~--------- 170 (302)
T 1w6u_A 100 KVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETG--------- 170 (302)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHC---------
T ss_pred HHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccC---------
Confidence 68999999997543 1223345679999999999988877532 22249999999877642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcH-HHHHHHHHcCCceeEEecCCCCccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAY-FFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
..+...|+.||++.+.+++.++.+ .|+++++||||.|++++....... ......+....+ .
T Consensus 171 ---~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p------------~ 235 (302)
T 1w6u_A 171 ---SGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP------------C 235 (302)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCT------------T
T ss_pred ---CCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCC------------c
Confidence 145578999999999999999877 589999999999998732111000 011122332221 1
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVK 360 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~ 360 (424)
..+++++|+|++++.++...... ..|++|++.+|..+++.++++.+.+..|..
T Consensus 236 ~~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~~~~~~~~~~~~~~~~g~~ 288 (302)
T 1w6u_A 236 GRLGTVEELANLAAFLCSDYASW----------INGAVIKFDGGEEVLISGEFNDLRKVTKEQ 288 (302)
T ss_dssp SSCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTHHHHHHSTTGGGGGCCHHH
T ss_pred CCCCCHHHHHHHHHHHcCCcccc----------cCCCEEEECCCeeeccCCccccchhhcccc
Confidence 23788999999999988754321 234899999998899999888887776644
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=227.61 Aligned_cols=247 Identities=13% Similarity=0.063 Sum_probs=165.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+.................++.++.+|++|.++++++++.+
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 82 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999754433322222110112346889999999999999988854
Q ss_pred ---CccEEEEcccccCchh--------hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcc-cCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY--------AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSV-YGVNKKVP 217 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~--------~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~v-yg~~~~~~ 217 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.+. + ++||++||... +...
T Consensus 83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~~~---- 156 (278)
T 1spx_A 83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIASGLHAT---- 156 (278)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTTSSSSCC----
T ss_pred HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEecccccccCC----
Confidence 6799999999754321 23344678999999999988877653 4 49999999876 5421
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCc-HHHH------HHHHHcCCceeE
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMA-YFFF------TRDIIRGKRITV 287 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~-~~~~------~~~~~~~~~~~~ 287 (424)
.+...|+.||++.+.+++.++.+ .|+++++||||.|+++....... .... ...+....+
T Consensus 157 --------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p--- 225 (278)
T 1spx_A 157 --------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVP--- 225 (278)
T ss_dssp --------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCT---
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCC---
Confidence 34578999999999999999876 48999999999999985421100 0000 111111111
Q ss_pred EecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHh
Q 042406 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKIL 357 (424)
Q Consensus 288 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~ 357 (424)
...+.+++|+|++++.++..+.... ..|++|++.+|..+++.|+++.+.+.+
T Consensus 226 ---------~~~~~~~~dvA~~v~~l~s~~~~~~---------~tG~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 226 ---------AGVMGQPQDIAEVIAFLADRKTSSY---------IIGHQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp ---------TSSCBCHHHHHHHHHHHHCHHHHTT---------CCSCEEEESTTGGGC------------
T ss_pred ---------CcCCCCHHHHHHHHHHHcCccccCc---------ccCcEEEECCCcccccCcccccHHHHh
Confidence 1237899999999999887643210 123899999999999999999988764
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=223.61 Aligned_cols=227 Identities=19% Similarity=0.139 Sum_probs=168.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-C
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-A 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~ 154 (424)
++++|+|+||||+|+||++++++|+++|++|++++|+.+..... ..+ ..+++++.+|++|.+++++++++. +
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~----~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSL----AKE---CPGIEPVCVDLGDWDATEKALGGIGP 76 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----HHH---STTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHh---ccCCCcEEecCCCHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999999965332211 111 135778899999999999999865 5
Q ss_pred ccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|+||||||...... ..++.+..+++|+.|+.++++++.+. +..++||++||...|... .
T Consensus 77 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~ 144 (244)
T 1cyd_A 77 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF------------P 144 (244)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------T
T ss_pred CCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCC------------C
Confidence 799999999754321 22334678999999999988877653 422489999998887531 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 227 PASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
+...|+.||++.|.+++.++.+ .+++++++|||.++++........+.+...+..+.+ .++++++
T Consensus 145 ~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 212 (244)
T 1cyd_A 145 NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHP------------LRKFAEV 212 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHST------------TSSCBCH
T ss_pred CcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHHHhcCC------------ccCCCCH
Confidence 4578999999999999999877 489999999999999743211011223333333221 2469999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
+|+|++++.++..+... ..|+.+++.+|..
T Consensus 213 ~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~~ 242 (244)
T 1cyd_A 213 EDVVNSILFLLSDRSAS----------TSGGGILVDAGYL 242 (244)
T ss_dssp HHHHHHHHHHHSGGGTT----------CCSSEEEESTTGG
T ss_pred HHHHHHHHHHhCchhhc----------ccCCEEEECCCcc
Confidence 99999999998765422 3348899988753
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=231.46 Aligned_cols=237 Identities=13% Similarity=0.084 Sum_probs=171.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++|++|||||+|+||++++++|+++|++|++++|+.+......... ...+.++.+|++|.++++++++.+
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~ 77 (259)
T 4e6p_A 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI------GPAAYAVQMDVTRQDSIDAAIAATV 77 (259)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH------CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------CCCceEEEeeCCCHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999654333222111 356899999999999999988865
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++... +...+||++||...+...
T Consensus 78 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 149 (259)
T 4e6p_A 78 EHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGE-------- 149 (259)
T ss_dssp HHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC--------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCC--------
Confidence 6899999999865322 22344678999999999998877543 222389999998776421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCC---ceeEEecCCCCc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGK---RITVYEAPDGAS 295 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 295 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.|++|.... ...+........ ....+ ....
T Consensus 150 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~ 219 (259)
T 4e6p_A 150 ----ALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDG---VDALFARYENRPRGEKKRLV---GEAV 219 (259)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHH---HHHHHHHHHTCCTTHHHHHH---HHHS
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhh---hhhhhhhhccCChHHHHHHH---hccC
Confidence 345789999999999999999775 8999999999999984321 001111111110 00000 1122
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
....+.+++|+|++++.++...... ..|++|++.+|..+|
T Consensus 220 p~~r~~~~~dva~~v~~L~s~~~~~----------itG~~i~vdgG~~~s 259 (259)
T 4e6p_A 220 PFGRMGTAEDLTGMAIFLASAESDY----------IVSQTYNVDGGNWMS 259 (259)
T ss_dssp TTSSCBCTHHHHHHHHHTTSGGGTT----------CCSCEEEESTTSSCC
T ss_pred CCCCCcCHHHHHHHHHHHhCCccCC----------CCCCEEEECcChhcC
Confidence 3456899999999999888755432 345899999987553
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=226.26 Aligned_cols=206 Identities=9% Similarity=-0.022 Sum_probs=164.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+|+|+||||+|+||++++++|+++|+ +|++++|+.+. ...+++++.+|++|.+++.+++ +
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-------------~~~~~~~~~~D~~~~~~~~~~~----~ 66 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------------EHPRLDNPVGPLAELLPQLDGS----I 66 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------------CCTTEECCBSCHHHHGGGCCSC----C
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-------------cCCCceEEeccccCHHHHHHhh----h
Confidence 468999999999999999999999998 99999997543 1247888999999998888777 5
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATK 235 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK 235 (424)
|+||||||.... ...+++..+++|+.++.++++++++.+.+ +||++||.++|+ .+.+.|+.+|
T Consensus 67 d~vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~~--------------~~~~~y~~sK 129 (215)
T 2a35_A 67 DTAFCCLGTTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSALGADA--------------KSSIFYNRVK 129 (215)
T ss_dssp SEEEECCCCCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHHH
T ss_pred cEEEECeeeccc--cCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECCcccCC--------------CCccHHHHHH
Confidence 999999997432 34567889999999999999999998875 999999999986 2457899999
Q ss_pred HHHHHHHHHHHHHhCCc-EEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHh
Q 042406 236 KAGEAIAHAYNHIYGLS-ITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGL 314 (424)
Q Consensus 236 ~~~e~~~~~~~~~~~i~-~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~ 314 (424)
.++|.+++.+ +++ ++++||+.+|||..... +...+. +....+ .. ..++++|++|+|++++.++
T Consensus 130 ~~~e~~~~~~----~~~~~~~vrp~~v~g~~~~~~-----~~~~~~-~~~~~~----~~--~~~~~i~~~Dva~~~~~~~ 193 (215)
T 2a35_A 130 GELEQALQEQ----GWPQLTIARPSLLFGPREEFR-----LAEILA-APIARI----LP--GKYHGIEACDLARALWRLA 193 (215)
T ss_dssp HHHHHHHTTS----CCSEEEEEECCSEESTTSCEE-----GGGGTT-CCCC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCeEEEEeCceeeCCCCcch-----HHHHHH-Hhhhhc----cC--CCcCcEeHHHHHHHHHHHH
Confidence 9999988763 899 99999999999976421 111111 222222 12 2679999999999999999
Q ss_pred hhccccCCCCCCCCCCCCcceEEcCCCCcccHH
Q 042406 315 DTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVS 347 (424)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~ 347 (424)
+++. +++||+++++.+++.
T Consensus 194 ~~~~--------------~~~~~i~~~~~~~~~ 212 (215)
T 2a35_A 194 LEEG--------------KGVRFVESDELRKLG 212 (215)
T ss_dssp TCCC--------------SEEEEEEHHHHHHHH
T ss_pred hcCC--------------CCceEEcHHHHHHhh
Confidence 8754 179999987765543
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=220.86 Aligned_cols=231 Identities=16% Similarity=0.069 Sum_probs=169.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+|+||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (260)
T 3awd_A 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRM---EGHDVSSVVMDVTNTESVQNAVRSVHE 86 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999975433322222211 1357899999999999999988754
Q ss_pred ---CccEEEEcccccC-ch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAG-VR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~-~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||... .. ...++.+..+++|+.|+.++++++.+ .+.+ +||++||...+...
T Consensus 87 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~-------- 157 (260)
T 3awd_A 87 QEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQG-VIVAIGSMSGLIVN-------- 157 (260)
T ss_dssp HHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC--------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCC-EEEEEecchhcccC--------
Confidence 6799999999754 11 11223367899999999999888754 3443 89999997765421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
+..+...|+.||++.|.+++.++.+ .|+++++||||.|+++........+.+...+..+.+ ..
T Consensus 158 --~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~ 223 (260)
T 3awd_A 158 --RPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTP------------MG 223 (260)
T ss_dssp --SSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCT------------TS
T ss_pred --CCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcCC------------cC
Confidence 1123478999999999999999887 589999999999999854311001223333333322 12
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+++++|+|++++.++...... ..|++|++.+|.
T Consensus 224 ~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~ 257 (260)
T 3awd_A 224 RVGQPDEVASVVQFLASDAASL----------MTGAIVNVDAGF 257 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred CCCCHHHHHHHHHHHhCchhcc----------CCCcEEEECCce
Confidence 4889999999999988764322 334899999875
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-27 Score=222.31 Aligned_cols=247 Identities=14% Similarity=0.110 Sum_probs=173.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch--------hhhHHHHHhh-hhccCCeEEEEccCCCHH
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY--------ETSLKKARKG-LLERAGVFVIDADINDKS 144 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~ 144 (424)
..++++|++|||||+|+||++++++|+++|++|++++|+.... .+........ .....++.++.+|++|.+
T Consensus 8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 87 (278)
T 3sx2_A 8 EGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRE 87 (278)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHH
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 3457899999999999999999999999999999999973210 1111111111 112468999999999999
Q ss_pred HHHHHhhcc-----CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCC
Q 042406 145 LLDKIFNVV-----AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKK 215 (424)
Q Consensus 145 ~v~~~~~~~-----~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~ 215 (424)
+++++++.+ ++|+||||||+.......++.+..+++|+.|+.++++++.. .+...+||++||...+.....
T Consensus 88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~ 167 (278)
T 3sx2_A 88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGS 167 (278)
T ss_dssp HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCcc
Confidence 999998865 68999999998765444455678999999999998887643 332348999999776542110
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCC
Q 042406 216 VPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 216 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
+..+...|++||++.+.+++.++.++ |+++++|+||.|.+|..........+............+ .
T Consensus 168 --------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~---~ 236 (278)
T 3sx2_A 168 --------ADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAM---G 236 (278)
T ss_dssp --------SSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTT---S
T ss_pred --------CCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhh---h
Confidence 11234679999999999999998775 799999999999998654321111111112222111111 1
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.... ..+++++|+|++++.++...... ..|+++++.+|.
T Consensus 237 ~~~p-~~~~~p~dvA~~v~~l~s~~~~~----------itG~~i~vdGG~ 275 (278)
T 3sx2_A 237 NAMP-VEVLAPEDVANAVAWLVSDQARY----------ITGVTLPVDAGF 275 (278)
T ss_dssp CSSS-CSSBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTT
T ss_pred hhcC-cCcCCHHHHHHHHHHHhCccccc----------ccCCEEeECCCc
Confidence 2222 56899999999999988765432 445899998875
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=223.77 Aligned_cols=247 Identities=15% Similarity=0.148 Sum_probs=172.4
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch--------hhhHHHHHhh-hhccCCeEEEEccCCCHH
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY--------ETSLKKARKG-LLERAGVFVIDADINDKS 144 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~ 144 (424)
+.++++|++|||||+|+||++++++|+++|++|++++|+.+.. .......... .....++.++.+|++|.+
T Consensus 5 m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 84 (281)
T 3s55_A 5 MADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRA 84 (281)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHH
Confidence 4467899999999999999999999999999999999974321 1111111111 112457899999999999
Q ss_pred HHHHHhhcc-----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccC
Q 042406 145 LLDKIFNVV-----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 145 ~v~~~~~~~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg 211 (424)
+++++++.+ ++|+||||||+..... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+.
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~ 163 (281)
T 3s55_A 85 ALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYG-RIVTVSSMLGHS 163 (281)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGGS
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEECChhhcC
Confidence 999998865 6899999999865322 23334678999999999998875 344443 899999987764
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCc---e
Q 042406 212 VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKR---I 285 (424)
Q Consensus 212 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~---~ 285 (424)
.. .+...|++||++.+.+++.++.++ |+++++|+||.|++|..........+......... .
T Consensus 164 ~~------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (281)
T 3s55_A 164 AN------------FAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVE 231 (281)
T ss_dssp CC------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHH
T ss_pred CC------------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHH
Confidence 21 445789999999999999999874 89999999999999865421100000000000000 0
Q ss_pred eEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 286 TVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
..+. ........+.+++|+|++++.++...... ..|+++++.+|...+
T Consensus 232 ~~~~--~~~~~~~~~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdgG~~~~ 279 (281)
T 3s55_A 232 SVFA--SLHLQYAPFLKPEEVTRAVLFLVDEASSH----------ITGTVLPIDAGATAR 279 (281)
T ss_dssp HHHH--HHCSSSCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGG
T ss_pred HHHH--hhhccCcCCCCHHHHHHHHHHHcCCcccC----------CCCCEEEECCCcccC
Confidence 0000 00111246899999999999998765432 345899999987654
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=218.56 Aligned_cols=233 Identities=13% Similarity=0.059 Sum_probs=173.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+.++++|+++||||+|+||++++++|+++|++|++++|+.+..+........ ....++.++.+|++|.++++++++.+
T Consensus 5 m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 5 MFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQ--LGSGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT--TSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--hCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999976554443332221 12357899999999999999988765
Q ss_pred -----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.+. +.+ +||++||......
T Consensus 83 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~~~~~-------- 153 (262)
T 3pk0_A 83 VEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSG-RVVLTSSITGPIT-------- 153 (262)
T ss_dssp HHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSC-EEEEECCSBTTTB--------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEechhhccC--------
Confidence 6899999999864322 22334568999999999888877554 544 9999999765311
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
...+...|++||.+.+.+++.++.+ .|+++++|+||.|+++..... ...+...+....+.
T Consensus 154 ---~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~------------ 216 (262)
T 3pk0_A 154 ---GYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLEN--GEEYIASMARSIPA------------ 216 (262)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTT--CHHHHHHHHTTSTT------------
T ss_pred ---CCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccccc--CHHHHHHHHhcCCC------------
Confidence 1145678999999999999999987 489999999999998743211 12233334333221
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
..+.+.+|+|++++.++...... ..|+++++.+|..+
T Consensus 217 ~r~~~p~dva~~v~~L~s~~~~~----------itG~~i~vdGG~~~ 253 (262)
T 3pk0_A 217 GALGTPEDIGHLAAFLATKEAGY----------ITGQAIAVDGGQVL 253 (262)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTTC
T ss_pred CCCcCHHHHHHHHHHHhCccccC----------CcCCEEEECCCeec
Confidence 12778999999999988765432 44589999988654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=220.72 Aligned_cols=233 Identities=14% Similarity=0.103 Sum_probs=173.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|+++||||+|+||++++++|+++|++|++++|+.+..+........ ...++.++.+|++|.++++++++.+
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~ 84 (256)
T 3gaf_A 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQ---AGGKAIGLECNVTDEQHREAVIKAAL 84 (256)
T ss_dssp TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999976544433332221 2467899999999999999988865
Q ss_pred ----CccEEEEcccccCchh---hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY---AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~---~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++. +.+. .+||++||...+..
T Consensus 85 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~---------- 153 (256)
T 3gaf_A 85 DQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGG-GAILNISSMAGENT---------- 153 (256)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTCC----------
T ss_pred HHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEcCHHHcCC----------
Confidence 6899999999865422 233446789999999999988864 3443 39999999877642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++..... ........+....+ ...
T Consensus 154 --~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~p------------~~r 218 (256)
T 3gaf_A 154 --NVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATV-LTPEIERAMLKHTP------------LGR 218 (256)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHH-CCHHHHHHHHTTCT------------TSS
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhc-cCHHHHHHHHhcCC------------CCC
Confidence 1446889999999999999998875 89999999999988632100 00122222332221 234
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccH
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPV 346 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 346 (424)
+.+++|+|++++.++...... ..|+++++.+|...++
T Consensus 219 ~~~~~dva~~~~~L~s~~~~~----------itG~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 219 LGEAQDIANAALFLCSPAAAW----------ISGQVLTVSGGGVQEL 255 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTSCCC-
T ss_pred CCCHHHHHHHHHHHcCCcccC----------ccCCEEEECCCccccC
Confidence 788999999999988765432 3458999999876654
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=222.50 Aligned_cols=234 Identities=14% Similarity=0.037 Sum_probs=175.0
Q ss_pred CCCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 73 RPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 73 ~~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
.+.++++|++|||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|++|.++++++++.
T Consensus 35 ~m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~d~~~v~~~~~~ 112 (293)
T 3rih_A 35 VMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGE--LGAGNVIGVRLDVSDPGSCADAART 112 (293)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTT--SSSSCEEEEECCTTCHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--hCCCcEEEEEEeCCCHHHHHHHHHH
Confidence 34567899999999999999999999999999999999987655444333322 1225789999999999999998876
Q ss_pred c-----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCC
Q 042406 153 V-----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
+ ++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+..
T Consensus 113 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iV~isS~~~~~~------- 184 (293)
T 3rih_A 113 VVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRG-RVILTSSITGPVT------- 184 (293)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSC-EEEEECCSBTTTB-------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEEeChhhccC-------
Confidence 6 7899999999865322 23344679999999999998887 345544 9999999765311
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
...+...|++||++.+.+++.++.++ |+++++|+||.|+++..... ...+...+....++.
T Consensus 185 ----~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~~---------- 248 (293)
T 3rih_A 185 ----GYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDM--GEEYISGMARSIPMG---------- 248 (293)
T ss_dssp ----BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHT--CHHHHHHHHTTSTTS----------
T ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhc--cHHHHHHHHhcCCCC----------
Confidence 11345789999999999999998774 89999999999998743211 122333444433321
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
-+...+|+|++++.++...... ..|+++++.+|..+
T Consensus 249 --r~~~p~dvA~~v~fL~s~~a~~----------itG~~i~vdGG~~~ 284 (293)
T 3rih_A 249 --MLGSPVDIGHLAAFLATDEAGY----------ITGQAIVVDGGQVL 284 (293)
T ss_dssp --SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTTC
T ss_pred --CCCCHHHHHHHHHHHhCccccC----------CCCCEEEECCCccC
Confidence 2567899999999988765432 44589999988654
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-28 Score=233.11 Aligned_cols=238 Identities=16% Similarity=0.163 Sum_probs=176.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEcc-CCCHHHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD-INDKSLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D-l~d~~~v~~~~~~~~~d 156 (424)
.+|+|+||||||+||++|+++|+++|++|++++|+.+.... ... ....+++++.+| ++|.+++.++++++ |
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~--~~l----~~~~~v~~v~~D~l~d~~~l~~~~~~~--d 75 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EEL----QAIPNVTLFQGPLLNNVPLMDTLFEGA--H 75 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHH----HTSTTEEEEESCCTTCHHHHHHHHTTC--S
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhH--HHH----hhcCCcEEEECCccCCHHHHHHHHhcC--C
Confidence 46789999999999999999999999999999997654311 111 112478999999 99999999999976 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCc--ccCCCCCCCCCCCCCCCCCCChHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSS--VYGVNKKVPFSEKDRTDQPASLYAA 233 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~--vyg~~~~~~~~e~~~~~~~~~~Y~~ 233 (424)
+||||++... . ..|..+ .+++++|++.+ ++ +||++||.+ .|+. .+...|+.
T Consensus 76 ~Vi~~a~~~~-----~------~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~~~~~~~~-------------~~~~~y~~ 129 (352)
T 1xgk_A 76 LAFINTTSQA-----G------DEIAIG-KDLADAAKRAGTIQ-HYIYSSMPDHSLYGP-------------WPAVPMWA 129 (352)
T ss_dssp EEEECCCSTT-----S------CHHHHH-HHHHHHHHHHSCCS-EEEEEECCCGGGTSS-------------CCCCTTTH
T ss_pred EEEEcCCCCC-----c------HHHHHH-HHHHHHHHHcCCcc-EEEEeCCccccccCC-------------CCCccHHH
Confidence 9999987531 1 247777 99999999988 75 999999975 4432 23367999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH-HHHHHHHHH
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI-DDIVKGCLA 312 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-~Dva~a~~~ 312 (424)
+|+++|.++++. ++++++|||+ +||++..... ...+.......+... +..++.++..++++|+ +|+|++++.
T Consensus 130 sK~~~E~~~~~~----gi~~~ivrpg-~~g~~~~~~~-~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~v~~Dva~ai~~ 202 (352)
T 1xgk_A 130 PKFTVENYVRQL----GLPSTFVYAG-IYNNNFTSLP-YPLFQMELMPDGTFE-WHAPFDPDIPLPWLDAEHDVGPALLQ 202 (352)
T ss_dssp HHHHHHHHHHTS----SSCEEEEEEC-EEGGGCBSSS-CSSCBEEECTTSCEE-EEESSCTTSCEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc----CCCEEEEecc-eecCCchhcc-cccccccccCCCceE-EeeccCCCCceeeEecHHHHHHHHHH
Confidence 999999998764 8999999987 6887653211 000000001122221 1222557888999999 899999999
Q ss_pred HhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccccccc
Q 042406 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP 367 (424)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 367 (424)
+++++... ..+++||+++ +.+|+.|+++.+.+.+|.+.+....|
T Consensus 203 ~l~~~~~~----------~~g~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp 246 (352)
T 1xgk_A 203 IFKDGPQK----------WNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVP 246 (352)
T ss_dssp HHHHCHHH----------HTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECS
T ss_pred HHhCCchh----------hCCeEEEEec-CCCCHHHHHHHHHHHHCCCCceEECC
Confidence 99875211 1238999996 67999999999999999987665554
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=222.02 Aligned_cols=234 Identities=11% Similarity=0.063 Sum_probs=168.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (263)
T 3ai3_A 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKE--KFGVRVLEVAVDVATPEGVDAVVESVRS 81 (263)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHCCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHH--hcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999975443322222111 11357899999999999999988754
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++. +.+.+ +||++||...+...
T Consensus 82 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 151 (263)
T 3ai3_A 82 SFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGG-AIIHNASICAVQPL--------- 151 (263)
T ss_dssp HHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECchhhcCCC---------
Confidence 6799999999854321 223346789999999988887764 34443 99999998887531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC---------cHHHHHHHHHcCCceeEEec
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDM---------AYFFFTRDIIRGKRITVYEA 290 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 290 (424)
.+...|++||++.+.+++.++.+ .|+++++||||.|++|...... ....+...+....
T Consensus 152 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 221 (263)
T 3ai3_A 152 ---WYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEH------- 221 (263)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH-------
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcC-------
Confidence 34578999999999999999877 4899999999999997321000 0001111111110
Q ss_pred CCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 291 PDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 291 ~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
.....+.+++|+|++++.++..+... ..|++|++.+|..++
T Consensus 222 ----~p~~~~~~~~dvA~~~~~l~s~~~~~----------~~G~~~~vdgG~~~s 262 (263)
T 3ai3_A 222 ----APIKRFASPEELANFFVFLCSERATY----------SVGSAYFVDGGMLKT 262 (263)
T ss_dssp ----CTTCSCBCHHHHHHHHHHHTSTTCTT----------CCSCEEEESTTCCCC
T ss_pred ----CCCCCCcCHHHHHHHHHHHcCccccC----------CCCcEEEECCCcccc
Confidence 01234889999999999988754321 334899999887654
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=218.17 Aligned_cols=218 Identities=15% Similarity=0.148 Sum_probs=167.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+.++|++|||||+|+||++++++|+++|++|++++|+.+.. ....+.++.+|++|+++++++++.+
T Consensus 25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~------------~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 92 (260)
T 3un1_A 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPS------------ADPDIHTVAGDISKPETADRIVREGIE 92 (260)
T ss_dssp HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCC------------SSTTEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhc------------ccCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999965432 1237899999999999999998865
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||+..... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+....
T Consensus 93 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~~~~-------- 163 (260)
T 3un1_A 93 RFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSG-HIVSITTSLVDQPMV-------- 163 (260)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCTTTTSCBT--------
T ss_pred HCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc-EEEEEechhhccCCC--------
Confidence 6899999999865322 22334678999999999998877 445544 899999987764321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|+.||++.+.+++.++.++ |+++++|+||.|++|..... ....+.... ....
T Consensus 164 --~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-----~~~~~~~~~------------p~~r 224 (260)
T 3un1_A 164 --GMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE-----THSTLAGLH------------PVGR 224 (260)
T ss_dssp --TCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG-----GHHHHHTTS------------TTSS
T ss_pred --CCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH-----HHHHHhccC------------CCCC
Confidence 1456789999999999999999887 89999999999999865421 122222222 2234
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
+.+++|+|++++.+.+. .. ..|++|++.+|...+
T Consensus 225 ~~~~~dva~av~~L~~~-~~-----------itG~~i~vdGG~~~~ 258 (260)
T 3un1_A 225 MGEIRDVVDAVLYLEHA-GF-----------ITGEILHVDGGQNAG 258 (260)
T ss_dssp CBCHHHHHHHHHHHHHC-TT-----------CCSCEEEESTTGGGC
T ss_pred CcCHHHHHHHHHHhccc-CC-----------CCCcEEEECCCeecc
Confidence 78899999999988322 21 345899999886543
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=216.32 Aligned_cols=226 Identities=15% Similarity=0.129 Sum_probs=170.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc-hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY-YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+.+|+++||||+|+||++++++|+++|++|++++|.... .+....... ....++.++.+|++|.++++++++.+
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 78 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIK---AKGVDSFAIQANVADADEVKAMIKEVVS 78 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH---HTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999885532 222111111 12457889999999999999998865
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+...
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 148 (246)
T 3osu_A 79 QFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSG-AIINLSSVVGAVGN--------- 148 (246)
T ss_dssp HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEEcchhhcCCC---------
Confidence 7899999999864322 23334679999999999998887 444544 89999997665321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.+...|+.||++.+.+++.++.++ |+++++|+||.|+++.... ....+...+..+.+. ..
T Consensus 149 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~--~~~~~~~~~~~~~p~------------~r 211 (246)
T 3osu_A 149 ---PGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA--LSDELKEQMLTQIPL------------AR 211 (246)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSC--SCHHHHHHHHTTCTT------------CS
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccc--cCHHHHHHHHhcCCC------------CC
Confidence 346789999999999999998754 8999999999999986432 223444445444332 23
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+.+.+|+|++++.++...... ..|++|++.+|.
T Consensus 212 ~~~~~dva~~v~~l~s~~~~~----------itG~~i~vdgG~ 244 (246)
T 3osu_A 212 FGQDTDIANTVAFLASDKAKY----------ITGQTIHVNGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHhCccccC----------CCCCEEEeCCCc
Confidence 778899999999988765432 345899999874
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=217.30 Aligned_cols=227 Identities=16% Similarity=0.143 Sum_probs=166.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-C
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-A 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~ 154 (424)
++++|+|+||||+|+||++++++|+++|++|++++|+.+..+.. ..+ ..++.++.+|++|.++++++++.. +
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~----~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSL----VRE---CPGIEPVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----HHH---STTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHH---cCCCCEEEEeCCCHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999999964322211 111 135678899999999999999864 5
Q ss_pred ccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|+||||||...... ..++.+..+++|+.++.++++++.+. +..++||++||...+... .
T Consensus 77 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~ 144 (244)
T 3d3w_A 77 VDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV------------T 144 (244)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------T
T ss_pred CCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCC------------C
Confidence 799999999754321 22334679999999998888877553 412489999998776521 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
+...|+.||++.|.+++.++.++ |+++++||||.|+++..............+.... ....++++
T Consensus 145 ~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 212 (244)
T 3d3w_A 145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRI------------PLGKFAEV 212 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTC------------TTCSCBCH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHhhC------------CCCCCcCH
Confidence 45789999999999999998773 8999999999999974321000001122222221 12358999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
+|+|++++.++...... ..|++|++.+|..
T Consensus 213 ~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~~ 242 (244)
T 3d3w_A 213 EHVVNAILFLLSDRSGM----------TTGSTLPVEGGFW 242 (244)
T ss_dssp HHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred HHHHHHHHHHcCccccC----------CCCCEEEECCCcc
Confidence 99999999998764321 2348999998754
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=218.29 Aligned_cols=230 Identities=15% Similarity=0.080 Sum_probs=154.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc--
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV-- 152 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~-- 152 (424)
.++++|+|+||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.
T Consensus 10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 86 (266)
T 1xq1_A 10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK---KGFQVTGSVCDASLRPEREKLMQTVS 86 (266)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeeEEEECCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999975443332222211 134689999999999999988864
Q ss_pred ----cCccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 153 ----VAFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 153 ----~~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
.++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+...
T Consensus 87 ~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~------- 158 (266)
T 1xq1_A 87 SMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCG-NIIFMSSIAGVVSA------- 158 (266)
T ss_dssp HHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-EEEEEC---------------
T ss_pred HHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEccchhccCC-------
Confidence 36799999999754321 22334678999999999998887 445544 99999998776421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.+...|+.||++.+.+++.++.++ |+++++||||.++++...... ...+...+... ...
T Consensus 159 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~------------~~~ 220 (266)
T 1xq1_A 159 -----SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY-DDEFKKVVISR------------KPL 220 (266)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC-----------------------------------
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhc-CHHHHHHHHhc------------CCC
Confidence 345789999999999999998775 899999999999998543210 00111111111 111
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
..+++++|+|++++.++...... ..|++|++.+|..
T Consensus 221 ~~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~~ 256 (266)
T 1xq1_A 221 GRFGEPEEVSSLVAFLCMPAASY----------ITGQTICVDGGLT 256 (266)
T ss_dssp ---CCGGGGHHHHHHHTSGGGTT----------CCSCEEECCCCEE
T ss_pred CCCcCHHHHHHHHHHHcCccccC----------ccCcEEEEcCCcc
Confidence 24788999999999988754322 3348999998754
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-28 Score=228.89 Aligned_cols=240 Identities=14% Similarity=0.190 Sum_probs=175.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+|+||||||+||++++++|+++|++|++++|+.+...+..... ...+...+++++.+|++|++++.++++++ |+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~d~~~l~~~~~~~--d~v 80 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQM-LLYFKQLGAKLIEASLDDHQRLVDALKQV--DVV 80 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHH-HHHHHTTTCEEECCCSSCHHHHHHHHTTC--SEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHH-HHHHHhCCeEEEeCCCCCHHHHHHHHhCC--CEE
Confidence 578999999999999999999999999999999764321111111 11123467999999999999999999976 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCC-CChHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTDQP-ASLYAATKK 236 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~-~~~Y~~sK~ 236 (424)
||+|+..... .|+.++.+++++|++.+ ++ +||+ | +||...... +.+. .| ...| .+|.
T Consensus 81 i~~a~~~~~~-----------~~~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~~~~---~~~~-~p~~~~y-~sK~ 139 (313)
T 1qyd_A 81 ISALAGGVLS-----------HHILEQLKLVEAIKEAGNIK-RFLP-S---EFGMDPDIM---EHAL-QPGSITF-IDKR 139 (313)
T ss_dssp EECCCCSSSS-----------TTTTTHHHHHHHHHHSCCCS-EEEC-S---CCSSCTTSC---CCCC-SSTTHHH-HHHH
T ss_pred EECCccccch-----------hhHHHHHHHHHHHHhcCCCc-eEEe-c---CCcCCcccc---ccCC-CCCcchH-HHHH
Confidence 9999975321 26778899999999998 75 8885 3 455322211 1112 23 4578 9999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHH----HHcCCceeEEecCCCCccccccccHHHHHHHHHH
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRD----IIRGKRITVYEAPDGASVARDFTYIDDIVKGCLA 312 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 312 (424)
++|.++++ .|++++++||+.++|+.... +... ...++.+.++ ++++..++++|++|+|++++.
T Consensus 140 ~~e~~~~~----~g~~~~ilrp~~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~~~Dva~~~~~ 206 (313)
T 1qyd_A 140 KVRRAIEA----ASIPYTYVSSNMFAGYFAGS------LAQLDGHMMPPRDKVLIY---GDGNVKGIWVDEDDVGTYTIK 206 (313)
T ss_dssp HHHHHHHH----TTCCBCEEECCEEHHHHTTT------SSCTTCCSSCCSSEECCB---TTSCSEEEEECHHHHHHHHHH
T ss_pred HHHHHHHh----cCCCeEEEEeceeccccccc------cccccccccCCCCeEEEe---CCCCceEEEEEHHHHHHHHHH
Confidence 99988764 48999999999998753211 0000 1123333333 567889999999999999999
Q ss_pred HhhhccccCCCCCCCCCCCCcceEEcCC-CCcccHHHHHHHHHHHhCccccccccc
Q 042406 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGN-TTPVPVSRLVSLLEKILKVKAETKVLP 367 (424)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~el~~~i~~~~g~~~~~~~~~ 367 (424)
++..+.. .+++|++.+ ++.+|+.|+++.+.+.+|.+.+....|
T Consensus 207 ~l~~~~~------------~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 250 (313)
T 1qyd_A 207 SIDDPQT------------LNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 250 (313)
T ss_dssp HTTCGGG------------SSSEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred HHhCccc------------CCceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECC
Confidence 9987642 126788876 478999999999999999887655443
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=217.06 Aligned_cols=233 Identities=11% Similarity=0.087 Sum_probs=169.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|++|||||+|+||++++++|+++|++|++++|+.+..+........ ...++.++.+|++|.++++++++.+
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ---FPGQILTVQMDVRNTDDIQKMIEQIDE 79 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---STTCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999976544333222211 2357899999999999999998865
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++. +.+...+||++||...+...
T Consensus 80 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 150 (257)
T 3imf_A 80 KFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAG--------- 150 (257)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCC---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCC---------
Confidence 7899999999754321 223346799999999999888773 22223499999998776421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCCCCCcH-HHHHHHHHcCCceeEEecCCCCccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI----YGLSITGLRFFTVYGPWGRPDMAY-FFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~i~~~~vrp~~v~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.....|++||++.+.+++.++.+ .|+++++|+||.|.++........ ..+...+.... ..
T Consensus 151 ---~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------p~ 215 (257)
T 3imf_A 151 ---PGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSV------------PL 215 (257)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTS------------TT
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcC------------CC
Confidence 34578999999999999988754 389999999999998854321100 00111122211 12
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
..+.+++|+|++++.++...... ..|+++++.+|..++
T Consensus 216 ~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~~~ 253 (257)
T 3imf_A 216 GRLGTPEEIAGLAYYLCSDEAAY----------INGTCMTMDGGQHLH 253 (257)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTTSC
T ss_pred CCCcCHHHHHHHHHHHcCchhcC----------ccCCEEEECCCcccC
Confidence 23788999999999988765432 345899999887554
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-28 Score=223.55 Aligned_cols=229 Identities=15% Similarity=0.096 Sum_probs=165.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--Ccc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--AFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--~~d 156 (424)
+|+||||||+||||++++++|+++|++|++++|+.+.... .+.+|++|.++++++++.. ++|
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------------~~~~D~~~~~~~~~~~~~~~~~~d 64 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA----------------DLSTPGGRETAVAAVLDRCGGVLD 64 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC----------------CTTSHHHHHHHHHHHHHHHTTCCS
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc----------------cccCCcccHHHHHHHHHHcCCCcc
Confidence 3689999999999999999999999999999996543211 1568999999999999854 679
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCC-CC-------CCCC-
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVP-FS-------EKDR- 223 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~-~~-------e~~~- 223 (424)
+||||||.... ..+.+..+++|+.|+.++++++.+. +. ++||++||.++|+.....+ .. ++.+
T Consensus 65 ~vi~~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (255)
T 2dkn_A 65 GLVCCAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQ-PAAVIVGSIAATQPGAAELPMVEAMLAGDEARAI 140 (255)
T ss_dssp EEEECCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHH
T ss_pred EEEECCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ceEEEEeccccccccccccchhhhhcccchhhhh
Confidence 99999997542 3557889999999999999987654 33 4999999999987431110 00 0000
Q ss_pred -----CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 224 -----TDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 224 -----~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
...+...|+.||++.|.+++.++++ .|++++++|||.|+|+... .++.....+.....+ .+
T Consensus 141 ~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~------~~~~~~~~~~~~~~~----~~- 209 (255)
T 2dkn_A 141 ELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQ------ASKADPRYGESTRRF----VA- 209 (255)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHH------HHHHCTTTHHHHHSC----CC-
T ss_pred hhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhh------hcccchhhHHHHHHH----HH-
Confidence 0034578999999999999998876 5999999999999997321 110000000000000 01
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHH
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSR 348 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e 348 (424)
...++++++|+|++++.++..+... ..|++|++++|..+++.|
T Consensus 210 ~~~~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 210 PLGRGSEPREVAEAIAFLLGPQASF----------IHGSVLFVDGGMDALMRA 252 (255)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTHHHHHCT
T ss_pred HhcCCCCHHHHHHHHHHHhCCCccc----------ceeeEEEecCCeEeeeec
Confidence 3457999999999999999865321 234899999988776654
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-27 Score=217.33 Aligned_cols=230 Identities=13% Similarity=0.054 Sum_probs=169.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-eCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGL-DNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.++|++|||||+|+||++++++|+++|++|+++ +|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEK---LGVKVLVVKANVGQPAKIKEMFQQIDE 78 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999997 6754433332222211 2357899999999999999998876
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++. +.+. .+||++||.+.+..
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~---------- 147 (258)
T 3oid_A 79 TFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGG-GHIVSISSLGSIRY---------- 147 (258)
T ss_dssp HHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC-EEEEEEEEGGGTSB----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECchhhCCC----------
Confidence 7899999999754322 222345689999999999888774 3443 39999999877642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++..........+...+....+ ...
T Consensus 148 --~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------~~r 213 (258)
T 3oid_A 148 --LENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTP------------AGR 213 (258)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHCT------------TSS
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcCC------------CCC
Confidence 1456889999999999999999875 89999999999998744321111223333333222 123
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
+.+++|+|++++.++...... ..|+++++.+|...
T Consensus 214 ~~~~~dva~~v~~L~s~~~~~----------itG~~i~vdGG~~~ 248 (258)
T 3oid_A 214 MVEIKDMVDTVEFLVSSKADM----------IRGQTIIVDGGRSL 248 (258)
T ss_dssp CBCHHHHHHHHHHHTSSTTTT----------CCSCEEEESTTGGG
T ss_pred CcCHHHHHHHHHHHhCcccCC----------ccCCEEEECCCccC
Confidence 788999999999988765432 44589999988644
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=218.64 Aligned_cols=229 Identities=17% Similarity=0.164 Sum_probs=143.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|++|||||+|+||++++++|+++|++|++++|+.+........... ....+.++.+|++|.++++++++.+
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVA---DGGTAISVAVDVSDPESAKAMADRTL 81 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999976544433332221 2457899999999999999998865
Q ss_pred ----CccEEEEcccccCch-------hhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR-------YAMQNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~-------~~~~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~ 218 (424)
++|+||||||..... ...++.+..+++|+.|+.+++++ +++.+.+ +||++||...|.
T Consensus 82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~------- 153 (253)
T 3qiv_A 82 AEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGG-AIVNQSSTAAWL------- 153 (253)
T ss_dssp HHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECC------------
T ss_pred HHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC-EEEEECCccccC-------
Confidence 789999999984321 12233467999999996665554 4455544 899999988762
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
+...|++||++.+.+++.++.++ |+++++|+||.|+++..... ....+...+..+.+
T Consensus 154 --------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~----------- 213 (253)
T 3qiv_A 154 --------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTT-TPKEMVDDIVKGLP----------- 213 (253)
T ss_dssp --------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-------------------------------------
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhc-CcHHHHHHHhccCC-----------
Confidence 23569999999999999999886 79999999999999854321 11112222222222
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
...+.+++|+|++++.++...... ..|++|++.+|..++
T Consensus 214 -~~~~~~~~dva~~~~~l~s~~~~~----------~tG~~~~vdgG~~~~ 252 (253)
T 3qiv_A 214 -LSRMGTPDDLVGMCLFLLSDEASW----------ITGQIFNVDGGQIIR 252 (253)
T ss_dssp -------CCHHHHHHHHHHSGGGTT----------CCSCEEEC-------
T ss_pred -CCCCCCHHHHHHHHHHHcCccccC----------CCCCEEEECCCeecC
Confidence 223566899999999988765432 345899999887543
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=218.69 Aligned_cols=242 Identities=14% Similarity=0.077 Sum_probs=166.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+.++.+|++|||||+|+||++++++|+++|++|++++|+............ .......+.++.+|++|.++++++++.+
T Consensus 20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEV-AGLSSGTVLHHPADMTKPSEIADMMAMV 98 (281)
T ss_dssp --CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHH-HTTCSSCEEEECCCTTCHHHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHH-hhccCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 346788999999999999999999999999999999995432211111111 1112457899999999999999988865
Q ss_pred -----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+...
T Consensus 99 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~------- 170 (281)
T 3v2h_A 99 ADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWG-RIINIASAHGLVAS------- 170 (281)
T ss_dssp HHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC-------
T ss_pred HHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEECCcccccCC-------
Confidence 6899999999865432 22334678999999999988876 444443 89999998776421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCce-eEEecCCCCcc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRI-TVYEAPDGASV 296 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 296 (424)
.....|++||++.+.+++.++.++ |+++++|+||.|.+|..................... ..+ .....
T Consensus 171 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p 242 (281)
T 3v2h_A 171 -----PFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVM---LKGQP 242 (281)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-------------------------------CCT
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHH---HhcCC
Confidence 345789999999999999998775 899999999999998543210000000000000000 011 23344
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+++++|+|++++.++...... ..|+++++.+|.
T Consensus 243 ~~r~~~~edvA~~v~~L~s~~a~~----------itG~~i~vdGG~ 278 (281)
T 3v2h_A 243 TKKFITVEQVASLALYLAGDDAAQ----------ITGTHVSMDGGW 278 (281)
T ss_dssp TCSCBCHHHHHHHHHHHHSSGGGG----------CCSCEEEESTTG
T ss_pred CCCccCHHHHHHHHHHHcCCCcCC----------CCCcEEEECCCc
Confidence 567999999999999988765432 345899998874
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-27 Score=217.88 Aligned_cols=235 Identities=16% Similarity=0.080 Sum_probs=170.8
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
++++|+++||||+ |+||++++++|+++|++|++++|+.+ ........... ...+.++.+|++|.++++++++.+
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~ 80 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEA---LGGALLFRADVTQDEELDALFAGV 80 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHH---TTCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHHHH
Confidence 4678999999999 99999999999999999999999753 22222222111 124789999999999999988865
Q ss_pred -----CccEEEEcccccCc--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGV--------RYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||.... ....++.+..+++|+.|+.++++++.+... ..+||++||.+.+...
T Consensus 81 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------ 154 (261)
T 2wyu_A 81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV------ 154 (261)
T ss_dssp HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC------
T ss_pred HHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCC------
Confidence 67999999998643 112334467999999999999999876521 1389999997765421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.|+++..........+...+....+.
T Consensus 155 ------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~----------- 217 (261)
T 2wyu_A 155 ------PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPL----------- 217 (261)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTT-----------
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCC-----------
Confidence 345689999999999999998775 899999999999998543211122233333322221
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHH
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSR 348 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e 348 (424)
..+.+++|+|++++.++...... ..|++|++.+|..++..|
T Consensus 218 -~~~~~~~dva~~v~~l~s~~~~~----------~tG~~~~vdgG~~~~~~~ 258 (261)
T 2wyu_A 218 -RRNITQEEVGNLGLFLLSPLASG----------ITGEVVYVDAGYHIMGME 258 (261)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGBC--
T ss_pred -CCCCCHHHHHHHHHHHcChhhcC----------CCCCEEEECCCccccCCC
Confidence 12678999999999988654322 344899999886655443
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-27 Score=219.21 Aligned_cols=233 Identities=15% Similarity=0.125 Sum_probs=172.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++|++|||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|++|.++++++++.+
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 120 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVE--KEGVKCVLLPGDLSDEQHCKDIVQETV 120 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH--TTTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHH--hcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999976533222222111 12457899999999999999988765
Q ss_pred ----CccEEEEcccccCchh-----hccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY-----AMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~-----~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++..... ..+||++||...+...
T Consensus 121 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~---------- 190 (291)
T 3ijr_A 121 RQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGN---------- 190 (291)
T ss_dssp HHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCC----------
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCC----------
Confidence 6899999999754311 2334567999999999999999977532 2489999998877431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.|+++...... .......+ ........+
T Consensus 191 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~-~~~~~~~~------------~~~~p~~r~ 255 (291)
T 3ijr_A 191 --ETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSF-DEKKVSQF------------GSNVPMQRP 255 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHS-CHHHHHHT------------TTTSTTSSC
T ss_pred --CCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccC-CHHHHHHH------------HccCCCCCC
Confidence 345789999999999999999875 899999999999987311000 00111111 112223447
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
.+++|+|++++.++...... ..|+++++.+|..+
T Consensus 256 ~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~~~ 289 (291)
T 3ijr_A 256 GQPYELAPAYVYLASSDSSY----------VTGQMIHVNGGVIV 289 (291)
T ss_dssp BCGGGTHHHHHHHHSGGGTT----------CCSCEEEESSSCCC
T ss_pred cCHHHHHHHHHHHhCCccCC----------CcCCEEEECCCccc
Confidence 88999999999988765432 44589999887543
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.1e-27 Score=215.57 Aligned_cols=226 Identities=16% Similarity=0.118 Sum_probs=162.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|++|||||+|+||++++++|+++|++|++++|+.+..+...... ..++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL------GAAVRFRNADVTNEADATAALAFAKQ 77 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------------CEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh------CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999876544332211 346899999999999999998865
Q ss_pred ---CccEEEEcccccCch--------hhccChHHHHHHHHHHHHHHHHHHHhcC---------CCCeEEEecCCcccCCC
Q 042406 154 ---AFTHVMHLAAQAGVR--------YAMQNPNSYVESNIAGFVNLLETCKSSD---------PQPAIVWASSSSVYGVN 213 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~--------~~~~~~~~~~~~N~~g~~~ll~a~~~~~---------~~~~~v~~SS~~vyg~~ 213 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.... ...+||++||...+...
T Consensus 78 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~ 157 (257)
T 3tpc_A 78 EFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQ 157 (257)
T ss_dssp HHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC
T ss_pred HcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCC
Confidence 689999999986432 1223456789999999999988876531 22389999998776421
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEec
Q 042406 214 KKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEA 290 (424)
Q Consensus 214 ~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (424)
.+...|++||++.+.+++.++.+ .|+++++|+||.|.++..... .......+...
T Consensus 158 ------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~-------- 215 (257)
T 3tpc_A 158 ------------IGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAGM--PQDVQDALAAS-------- 215 (257)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC----------------CC--------
T ss_pred ------------CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhccC--CHHHHHHHHhc--------
Confidence 34578999999999999999887 589999999999998743210 11111111111
Q ss_pred CCCCccc-cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 291 PDGASVA-RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 291 ~~~~~~~-~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
... ..+.+++|+|++++.++.... ..|+++++.+|..++
T Consensus 216 ----~p~~~r~~~~~dva~~v~~l~s~~~------------itG~~i~vdGG~~~~ 255 (257)
T 3tpc_A 216 ----VPFPPRLGRAEEYAALVKHICENTM------------LNGEVIRLDGALRMA 255 (257)
T ss_dssp ----SSSSCSCBCHHHHHHHHHHHHHCTT------------CCSCEEEESTTCCC-
T ss_pred ----CCCCCCCCCHHHHHHHHHHHcccCC------------cCCcEEEECCCccCC
Confidence 111 347899999999999886521 345899999886554
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-27 Score=215.46 Aligned_cols=227 Identities=14% Similarity=0.106 Sum_probs=165.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+++||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|++|.++++++++..
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWH--AYADKVLRVRADVADEGDVNAAIAATMEQFG 79 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHST--TTGGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999975433222211101 11346899999999999999988754
Q ss_pred CccEEEEcccccCchh-------hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRY-------AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~-------~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.++.++++++ ++.+.+ +||++||...+...
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~~--------- 149 (250)
T 2cfc_A 80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAG-VIVNIASVASLVAF--------- 149 (250)
T ss_dssp CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC---------
T ss_pred CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-EEEEECChhhccCC---------
Confidence 6799999999754321 22344678999999987766655 444544 99999998776421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.+...|+.||.+.+.+++.++.++ |+++++||||.|+++..........+...+....+ ...
T Consensus 150 ---~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 214 (250)
T 2cfc_A 150 ---PGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIP------------QKE 214 (250)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCT------------TCS
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCC------------CCC
Confidence 345789999999999999998775 89999999999999854310001122333333222 123
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+.+.+|+|++++.++..+... ..|+++++.+|.
T Consensus 215 ~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~ 247 (250)
T 2cfc_A 215 IGTAAQVADAVMFLAGEDATY----------VNGAALVMDGAY 247 (250)
T ss_dssp CBCHHHHHHHHHHHHSTTCTT----------CCSCEEEESTTG
T ss_pred CcCHHHHHHHHHHHcCchhhc----------ccCCEEEECCce
Confidence 789999999999988764321 334899998774
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=218.85 Aligned_cols=200 Identities=12% Similarity=0.054 Sum_probs=156.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
+++|+|+||||+|+||++++++|+++|+ +|++++|+.+..... ...++.++.+|++|.+++.++++++
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~---------~~~~~~~~~~D~~d~~~~~~~~~~~- 85 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE---------AYKNVNQEVVDFEKLDDYASAFQGH- 85 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG---------GGGGCEEEECCGGGGGGGGGGGSSC-
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcccc---------ccCCceEEecCcCCHHHHHHHhcCC-
Confidence 4678999999999999999999999999 999999976543221 1236889999999999999999865
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
|+||||||..... .+.+..+++|+.++.++++++++.+.+ +||++||.++|+. +...|+.+
T Consensus 86 -d~vi~~ag~~~~~---~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~SS~~~~~~--------------~~~~Y~~s 146 (242)
T 2bka_A 86 -DVGFCCLGTTRGK---AGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSSKGADKS--------------SNFLYLQV 146 (242)
T ss_dssp -SEEEECCCCCHHH---HHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCTT--------------CSSHHHHH
T ss_pred -CEEEECCCccccc---CCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEccCcCCCC--------------CcchHHHH
Confidence 9999999974322 235678999999999999999998865 9999999998862 34689999
Q ss_pred HHHHHHHHHHHHHHhCC-cEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHH
Q 042406 235 KKAGEAIAHAYNHIYGL-SITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAG 313 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i-~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 313 (424)
|.++|.+++.+ ++ ++++||||.+|||..... ....+........+. ......+++++|+|++++.+
T Consensus 147 K~~~e~~~~~~----~~~~~~~vrpg~v~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~dva~~~~~~ 213 (242)
T 2bka_A 147 KGEVEAKVEEL----KFDRYSVFRPGVLLCDRQESR-PGEWLVRKFFGSLPD--------SWASGHSVPVVTVVRAMLNN 213 (242)
T ss_dssp HHHHHHHHHTT----CCSEEEEEECCEEECTTGGGS-HHHHHHHHHHCSCCT--------TGGGGTEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEcCceecCCCCCCc-HHHHHHHHhhcccCc--------cccCCcccCHHHHHHHHHHH
Confidence 99999988764 78 699999999999965321 222333333322111 11123599999999999999
Q ss_pred hhhcc
Q 042406 314 LDTAK 318 (424)
Q Consensus 314 ~~~~~ 318 (424)
+.++.
T Consensus 214 ~~~~~ 218 (242)
T 2bka_A 214 VVRPR 218 (242)
T ss_dssp HTSCC
T ss_pred HhCcc
Confidence 98764
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-27 Score=216.81 Aligned_cols=232 Identities=16% Similarity=0.090 Sum_probs=167.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc---
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV--- 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~--- 152 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.
T Consensus 6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (260)
T 2ae2_A 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS---KGFKVEASVCDLSSRSERQELMNTVAN 82 (260)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999976543332222211 134688999999999999888864
Q ss_pred ---cCccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 153 ---VAFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 153 ---~~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
-++|+||||||..... ...++.+..+++|+.|+.++++++. +.+.+ +||++||...+..
T Consensus 83 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~--------- 152 (260)
T 2ae2_A 83 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERG-NVVFISSVSGALA--------- 152 (260)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSE-EEEEECCGGGTSC---------
T ss_pred HcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcchhhccC---------
Confidence 2679999999975432 1223446789999999999988874 44443 9999999877642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC---CCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP---DMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
..+...|++||.+.+.+++.++.++ |+++++|+||.+.++.... .......+..+....
T Consensus 153 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~------------ 217 (260)
T 2ae2_A 153 ---VPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRC------------ 217 (260)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTS------------
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcC------------
Confidence 1345789999999999999998875 8999999999998863110 000000000121111
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
....+.+++|+|++++.++...... ..|+++++.+|...+
T Consensus 218 ~~~~~~~~~dvA~~v~~l~s~~~~~----------~tG~~~~vdgG~~~~ 257 (260)
T 2ae2_A 218 ALRRMGEPKELAAMVAFLCFPAASY----------VTGQIIYVDGGLMAN 257 (260)
T ss_dssp TTCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGC
T ss_pred CCCCCCCHHHHHHHHHHHcCccccC----------CCCCEEEECCCcccc
Confidence 1224889999999999888654321 344899999886443
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=219.07 Aligned_cols=232 Identities=18% Similarity=0.123 Sum_probs=167.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC-CchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN-NYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
.+.+++|+|+||||+|+||++++++|+++|++|++++|.. +........... ...++.++.+|++|.++++++++.
T Consensus 16 ~~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~ 92 (274)
T 1ja9_A 16 SKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK---LGAQGVAIQADISKPSEVVALFDK 92 (274)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHH
Confidence 3457889999999999999999999999999999999943 222221111111 235788999999999999998875
Q ss_pred c-----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCccc-CCCCCCCCCCC
Q 042406 153 V-----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVY-GVNKKVPFSEK 221 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vy-g~~~~~~~~e~ 221 (424)
+ ++|+||||||..... ...++.+..+++|+.|+.++++++.+... +++||++||.+.+ ...
T Consensus 93 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~~-------- 164 (274)
T 1ja9_A 93 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGI-------- 164 (274)
T ss_dssp HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSC--------
T ss_pred HHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhccCCC--------
Confidence 4 679999999975432 12233467899999999999988876410 1399999998887 321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC-----------CCcHHHHHHHHHcCCceeE
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP-----------DMAYFFFTRDIIRGKRITV 287 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~-----------~~~~~~~~~~~~~~~~~~~ 287 (424)
.+...|+.||++.|.+++.++.++ |++++++|||.++++.... ......+...+..+
T Consensus 165 ----~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 235 (274)
T 1ja9_A 165 ----PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANM----- 235 (274)
T ss_dssp ----CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHT-----
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhc-----
Confidence 345789999999999999998775 8999999999998863210 00001122222211
Q ss_pred EecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 288 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.....+++++|+|++++.++..+... ..|++|++++|.
T Consensus 236 -------~~~~~~~~~~dva~~i~~l~~~~~~~----------~~G~~~~v~gG~ 273 (274)
T 1ja9_A 236 -------NPLKRIGYPADIGRAVSALCQEESEW----------INGQVIKLTGGG 273 (274)
T ss_dssp -------STTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred -------CCCCCccCHHHHHHHHHHHhCccccc----------ccCcEEEecCCc
Confidence 12345899999999999998765321 234899998863
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=219.01 Aligned_cols=233 Identities=10% Similarity=0.014 Sum_probs=168.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++|+++||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++..
T Consensus 10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 86 (260)
T 2zat_A 10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQG---EGLSVTGTVCHVGKAEDRERLVAMAV 86 (260)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999976443332222211 1346889999999999999888754
Q ss_pred ----CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||.... ....++.+..+++|+.|+.++++++. +.+.+ +||++||...|...
T Consensus 87 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~------- 158 (260)
T 2zat_A 87 NLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGG-SVLIVSSVGAYHPF------- 158 (260)
T ss_dssp HHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCGGGTSCC-------
T ss_pred HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEEechhhcCCC-------
Confidence 67999999997531 11223346789999999988887764 44443 99999998887531
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.+...|+.||.+.+.+++.++.++ |+++++|+||.+.++..............+... ...
T Consensus 159 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~------------~~~ 221 (260)
T 2zat_A 159 -----PNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKES------------LRI 221 (260)
T ss_dssp -----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHHH------------HTC
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHHHhc------------CCC
Confidence 345789999999999999998775 899999999999987432100000000111110 112
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
..+.+++|+|++++.++...... ..|++|++.+|...+
T Consensus 222 ~~~~~~~dva~~v~~l~s~~~~~----------~tG~~~~vdgG~~~s 259 (260)
T 2zat_A 222 RRLGNPEDCAGIVSFLCSEDASY----------ITGETVVVGGGTASR 259 (260)
T ss_dssp SSCBCGGGGHHHHHHHTSGGGTT----------CCSCEEEESTTCCCC
T ss_pred CCCCCHHHHHHHHHHHcCcccCC----------ccCCEEEECCCcccc
Confidence 34789999999999988765422 334899999987665
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=217.08 Aligned_cols=238 Identities=15% Similarity=0.137 Sum_probs=169.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc---------hhhhHHHHHhh-hhccCCeEEEEccCCCH
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY---------YETSLKKARKG-LLERAGVFVIDADINDK 143 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~ 143 (424)
+.++++|+++||||+|+||++++++|+++|++|++++|+.+. ........... .....++.++.+|++|.
T Consensus 10 ~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 89 (280)
T 3pgx_A 10 AGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDD 89 (280)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence 346789999999999999999999999999999999984210 01111111111 11245789999999999
Q ss_pred HHHHHHhhcc-----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCccc
Q 042406 144 SLLDKIFNVV-----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVY 210 (424)
Q Consensus 144 ~~v~~~~~~~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vy 210 (424)
++++++++.+ ++|+||||||...... ..++.+..+++|+.|+.++++++. +.+...+||++||...+
T Consensus 90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 169 (280)
T 3pgx_A 90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGL 169 (280)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhc
Confidence 9999998865 6899999999865432 223345789999999998888764 33323489999998776
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCC----
Q 042406 211 GVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGK---- 283 (424)
Q Consensus 211 g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~---- 283 (424)
... .....|++||++.+.+++.++.+ .|+++++|+||.|++|..... .+........
T Consensus 170 ~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~----~~~~~~~~~~~~~~ 233 (280)
T 3pgx_A 170 KAT------------PGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPE----AMMEIFARHPSFVH 233 (280)
T ss_dssp SCC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHH----HHHHHHHHCGGGGG
T ss_pred cCC------------CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchh----hhhhhhhcCchhhh
Confidence 421 34578999999999999999887 489999999999999865421 1111111111
Q ss_pred ceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 284 RITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 284 ~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..... ..... .+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 234 ~~~~~----~~~~~-r~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~ 277 (280)
T 3pgx_A 234 SFPPM----PVQPN-GFMTADEVADVVAWLAGDGSGT----------LTGTQIPVDKGA 277 (280)
T ss_dssp GSCCB----TTBCS-SCBCHHHHHHHHHHHHSGGGTT----------CSSCEEEESTTG
T ss_pred hhhhc----ccCCC-CCCCHHHHHHHHHHHhCccccC----------CCCCEEEECCCc
Confidence 11111 11112 3899999999999988765432 345899998874
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=218.54 Aligned_cols=238 Identities=13% Similarity=0.031 Sum_probs=163.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhh----hhccCCeEEEEccCCCHHHHHHHhh
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKG----LLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
++++|+|+||||+|+||++++++|+++|++|++++|+.+............ .....++.++.+|++|.++++++++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 83 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE 83 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence 467899999999999999999999999999999999654322211111000 0011468999999999999999888
Q ss_pred cc-----Cc-cEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCC
Q 042406 152 VV-----AF-THVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVP 217 (424)
Q Consensus 152 ~~-----~~-d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~ 217 (424)
.+ ++ |+||||||..... ...++.+..+++|+.|+.++++++.+. +..++||++||...+..
T Consensus 84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~----- 158 (264)
T 2pd6_A 84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVG----- 158 (264)
T ss_dssp HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHC-----
T ss_pred HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccC-----
Confidence 75 44 9999999986532 123345678999999999999887653 31238999999765431
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..+...|+.||.+.+.+++.++.+ .|+++++||||.++++.... ....+...+..+
T Consensus 159 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~------------ 217 (264)
T 2pd6_A 159 -------NVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK--VPQKVVDKITEM------------ 217 (264)
T ss_dssp -------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC------------CTGGG------------
T ss_pred -------CCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhh--cCHHHHHHHHHh------------
Confidence 134578999999999999999877 58999999999999985431 011111111111
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHH
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRL 349 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el 349 (424)
.....+++++|+|++++.++...... ..|+.+++.+|..++....
T Consensus 218 ~~~~~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~~~~~~~~ 262 (264)
T 2pd6_A 218 IPMGHLGDPEDVADVVAFLASEDSGY----------ITGTSVEVTGGLFMAENLY 262 (264)
T ss_dssp CTTCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC-------
T ss_pred CCCCCCCCHHHHHHHHHHHcCCcccC----------CCCCEEEECCCceeccccC
Confidence 11224789999999999988754321 3448999999876665544
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-27 Score=215.76 Aligned_cols=229 Identities=19% Similarity=0.092 Sum_probs=164.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCe-EEEEccCCCHHHHHHHhhcc
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGV-FVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.++++|+++||||+|+||++++++|+++|++|++++|+.+..+..... . ..++ .++.+|++|.++++++++.+
T Consensus 7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-----~-~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (254)
T 2wsb_A 7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQE-----L-GAAVAARIVADVTDAEAMTAAAAEA 80 (254)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----H-GGGEEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-----h-cccceeEEEEecCCHHHHHHHHHHH
Confidence 346889999999999999999999999999999999965432221111 1 2355 88999999999999888653
Q ss_pred ----CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||....... .++.+..+++|+.|+.++++++ ++.+.+ +||++||...+....
T Consensus 81 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~~------- 152 (254)
T 2wsb_A 81 EAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAG-AIVNLGSMSGTIVNR------- 152 (254)
T ss_dssp HHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCCS-------
T ss_pred HhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEecchhccCCC-------
Confidence 67999999998654221 2223578999999977766654 445544 999999988765321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
..+...|+.||++.|.+++.++.++ |+++++||||.++++........+.+...+....+ ..
T Consensus 153 ---~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~ 217 (254)
T 2wsb_A 153 ---PQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTP------------MG 217 (254)
T ss_dssp ---SSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTST------------TS
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhcCC------------CC
Confidence 1334789999999999999998775 89999999999999732100000122222322211 13
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+++++|+|++++.++...... ..|+++++.+|.
T Consensus 218 ~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~ 251 (254)
T 2wsb_A 218 RCGEPSEIAAAALFLASPAASY----------VTGAILAVDGGY 251 (254)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred CCCCHHHHHHHHHHHhCccccc----------ccCCEEEECCCE
Confidence 4889999999999988654321 334899998764
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=219.87 Aligned_cols=235 Identities=11% Similarity=0.035 Sum_probs=172.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+.++++|++|||||+|+||+++++.|+++|++|++++|+.+..+........ ....++.++.+|++|.++++++++.+
T Consensus 15 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~ 92 (266)
T 4egf_A 15 VLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGE--QFGTDVHTVAIDLAEPDAPAELARRA 92 (266)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHCCCEEEEECCTTSTTHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999976554443332221 12467999999999999999888765
Q ss_pred -----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.. .+...+||++||...+..
T Consensus 93 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 164 (266)
T 4egf_A 93 AEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAP-------- 164 (266)
T ss_dssp HHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC--------
T ss_pred HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccC--------
Confidence 6899999999865322 2233457899999999888887643 332348999999887642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++..............+....+ .
T Consensus 165 ----~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------~ 228 (266)
T 4egf_A 165 ----LPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIP------------L 228 (266)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTCT------------T
T ss_pred ----CCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhcCC------------C
Confidence 1445789999999999999998874 89999999999988632100000112222322221 1
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
..+.+++|+|++++.++...... ..|+++++.+|..+
T Consensus 229 ~r~~~p~dva~~v~~L~s~~~~~----------itG~~i~vdGG~~~ 265 (266)
T 4egf_A 229 GRFAVPHEVSDAVVWLASDAASM----------INGVDIPVDGGYTM 265 (266)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred CCCcCHHHHHHHHHHHhCchhcC----------ccCcEEEECCCccC
Confidence 23778999999999988765432 44589999987543
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-27 Score=217.71 Aligned_cols=232 Identities=14% Similarity=0.057 Sum_probs=167.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|++|||||+|+||++++++|+++|++|++++|+.+........ . ..++.++.+|++|.++++++++.+
T Consensus 25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-----~-~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (277)
T 3gvc_A 25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATK-----I-GCGAAACRVDVSDEQQIIAMVDACV 98 (277)
T ss_dssp --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-----H-CSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-----c-CCcceEEEecCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999965433322211 1 457899999999999999988865
Q ss_pred ----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.. .+. .+||++||...+..
T Consensus 99 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~Iv~isS~~~~~~--------- 168 (277)
T 3gvc_A 99 AAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGG-GAIVNLSSLAGQVA--------- 168 (277)
T ss_dssp HHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTSC---------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEcchhhccC---------
Confidence 789999999986542 22334467999999999888887643 443 38999999776542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCC---Cc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDG---AS 295 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 295 (424)
..+...|++||++.+.+++.++.+ .|+++++|+||.|++|.. ........-........ ..
T Consensus 169 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~----------~~~~~~~~~~~~~~~~~~~~~~ 235 (277)
T 3gvc_A 169 ---VGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQ----------QTAMAMFDGALGAGGARSMIAR 235 (277)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH----------HHHHTCC------CCHHHHHHH
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchH----------HHhhhcchhhHHHHhhhhhhhc
Confidence 144578999999999999999877 489999999999998721 11111000000000000 01
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
....+.+++|+|++++.++...... ..|+++++.+|...+
T Consensus 236 ~~~r~~~pedvA~~v~~L~s~~a~~----------itG~~i~vdGG~~~~ 275 (277)
T 3gvc_A 236 LQGRMAAPEEMAGIVVFLLSDDASM----------ITGTTQIADGGTIAA 275 (277)
T ss_dssp HHSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGS
T ss_pred cccCCCCHHHHHHHHHHHcCCccCC----------ccCcEEEECCcchhc
Confidence 1234788999999999998765432 445899999886554
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-27 Score=219.90 Aligned_cols=257 Identities=12% Similarity=0.084 Sum_probs=175.4
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch--------hhhHHHHHhh-hhccCCeEEEEccCCCHH
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY--------ETSLKKARKG-LLERAGVFVIDADINDKS 144 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~ 144 (424)
+.++++|++|||||+|+||++++++|+++|++|++++|+.+.. .......... .....++.++.+|++|.+
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRA 84 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHH
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 4467899999999999999999999999999999999973211 1111111111 112467899999999999
Q ss_pred HHHHHhhcc-----CccEEEEcccccCch--hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCC
Q 042406 145 LLDKIFNVV-----AFTHVMHLAAQAGVR--YAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKV 216 (424)
Q Consensus 145 ~v~~~~~~~-----~~d~vi~~Ag~~~~~--~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~ 216 (424)
+++++++.+ ++|+||||||..... ...++.+..+++|+.|+.++++++..... ..+||++||...+......
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~ 164 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQP 164 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccc
Confidence 999988865 689999999986543 22334568999999999999999987532 2489999997776432222
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEE-----
Q 042406 217 PFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVY----- 288 (424)
Q Consensus 217 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~----- 288 (424)
+..+.. +..+...|++||.+.+.+++.++.++ |+++++|+||.|.++...... ..............
T Consensus 165 ~~~~~~-~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~----~~~~~~~~~~~~~~~~~~~ 239 (287)
T 3pxx_A 165 PGAGGP-QGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAP----MYRQFRPDLEAPSRADALL 239 (287)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHH----HHHHHCTTSSSCCHHHHHH
T ss_pred cccccc-CCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccc----hhhhhccccccchhHHHHh
Confidence 222222 11345789999999999999999886 899999999999998553210 00111000000000
Q ss_pred ecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 289 EAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 289 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
..+........+.+++|+|++++.++...... ..|+++++.+|..++
T Consensus 240 ~~~~~~~~~~~~~~p~dva~~v~fL~s~~a~~----------itG~~i~vdGG~~~~ 286 (287)
T 3pxx_A 240 AFPAMQAMPTPYVEASDISNAVCFLASDESRY----------VTGLQFKVDAGAMLK 286 (287)
T ss_dssp HGGGGCSSSCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGG
T ss_pred hhhhhcccCCCCCCHHHHHhhHheecchhhcC----------CCCceEeECchhhhc
Confidence 00000011145899999999999988765432 445899999886543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-27 Score=208.79 Aligned_cols=203 Identities=14% Similarity=0.049 Sum_probs=155.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|+|+||||+|+||++++++|+++|++|++++|+.+... .....+++++.+|++|.+++.++++++ |+|
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~~D~~~~~~~~~~~~~~--d~v 71 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP---------SEGPRPAHVVVGDVLQAADVDKTVAGQ--DAV 71 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC---------SSSCCCSEEEESCTTSHHHHHHHHTTC--SEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcc---------cccCCceEEEEecCCCHHHHHHHHcCC--CEE
Confidence 479999999999999999999999999999999654221 112457899999999999999999976 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
||+||.... .++ .++|+.++.++++++++.+.+ +||++||.++|+.....+ .+...|+.+|.++
T Consensus 72 i~~a~~~~~----~~~---~~~n~~~~~~~~~~~~~~~~~-~~v~~Ss~~~~~~~~~~~--------~~~~~y~~~K~~~ 135 (206)
T 1hdo_A 72 IVLLGTRND----LSP---TTVMSEGARNIVAAMKAHGVD-KVVACTSAFLLWDPTKVP--------PRLQAVTDDHIRM 135 (206)
T ss_dssp EECCCCTTC----CSC---CCHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCTTCSC--------GGGHHHHHHHHHH
T ss_pred EECccCCCC----CCc---cchHHHHHHHHHHHHHHhCCC-eEEEEeeeeeccCccccc--------ccchhHHHHHHHH
Confidence 999997543 111 248999999999999998875 999999999997533211 1457899999999
Q ss_pred HHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 239 EAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 239 e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
|.+++. .+++++++||+.+ +++.....+ ...+. +.+. .++++++|+|++++.+++++.
T Consensus 136 e~~~~~----~~i~~~~lrp~~~-~~~~~~~~~-------------~~~~~--~~~~--~~~i~~~Dva~~~~~~~~~~~ 193 (206)
T 1hdo_A 136 HKVLRE----SGLKYVAVMPPHI-GDQPLTGAY-------------TVTLD--GRGP--SRVISKHDLGHFMLRCLTTDE 193 (206)
T ss_dssp HHHHHH----TCSEEEEECCSEE-ECCCCCSCC-------------EEESS--SCSS--CSEEEHHHHHHHHHHTTSCST
T ss_pred HHHHHh----CCCCEEEEeCCcc-cCCCCCcce-------------Eeccc--CCCC--CCccCHHHHHHHHHHHhcCcc
Confidence 998853 5999999999998 332221110 01110 1111 479999999999999998753
Q ss_pred ccCCCCCCCCCCCCcceEEcCCCC
Q 042406 319 KSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+++|+++++.
T Consensus 194 ------------~~g~~~~i~~g~ 205 (206)
T 1hdo_A 194 ------------YDGHSTYPSHQY 205 (206)
T ss_dssp ------------TTTCEEEEECCC
T ss_pred ------------ccccceeeeccc
Confidence 233899999864
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-26 Score=213.14 Aligned_cols=232 Identities=13% Similarity=0.074 Sum_probs=168.4
Q ss_pred CCCCCCCeEEEEcCCC-hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 74 PRSTRGLTVLVTGAAG-FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G-~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
...+++|+++||||+| +||++++++|+++|++|++++|+.+........... ....++.++.+|++|.++++++++.
T Consensus 17 ~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (266)
T 3o38_A 17 HGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLAD--LGLGRVEAVVCDVTSTEAVDALITQ 94 (266)
T ss_dssp CSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT--TCSSCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHh--cCCCceEEEEeCCCCHHHHHHHHHH
Confidence 3457899999999987 799999999999999999999976554443333221 2345799999999999999999886
Q ss_pred c-----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCC
Q 042406 153 V-----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
+ ++|+||||||...... ..++.+..+++|+.++.++++++... +...+||++||...+..
T Consensus 95 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~------- 167 (266)
T 3o38_A 95 TVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRA------- 167 (266)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCC-------
T ss_pred HHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCC-------
Confidence 6 7899999999865322 22334678999999999998887653 22348999999777542
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
..+...|++||++.+.+++.++.+ .|+++++|+||.|.++...... .......+ .....
T Consensus 168 -----~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~------------~~~~~ 229 (266)
T 3o38_A 168 -----QHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTS-SSELLDRL------------ASDEA 229 (266)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------------------------------CCT
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccC-cHHHHHHH------------HhcCC
Confidence 145688999999999999999877 4899999999999987432110 00111111 11223
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 230 ~~r~~~~~dva~~i~~l~s~~~~~----------~tG~~i~vdgG~ 265 (266)
T 3o38_A 230 FGRAAEPWEVAATIAFLASDYSSY----------MTGEVVSVSSQR 265 (266)
T ss_dssp TSSCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSCC
T ss_pred cCCCCCHHHHHHHHHHHcCccccC----------ccCCEEEEcCCc
Confidence 345889999999999988765432 445899998864
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-27 Score=216.88 Aligned_cols=231 Identities=13% Similarity=0.090 Sum_probs=170.1
Q ss_pred CCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 77 TRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 77 ~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+++|+++||||+ |+||++++++|+++|++|++++|+. ............ .....++.+|++|.++++++++.+
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQ---LGSDIVLQCDVAEDASIDTMFAELG 82 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHh---cCCcEEEEccCCCHHHHHHHHHHHH
Confidence 678999999999 9999999999999999999999976 222222222211 123478999999999999988755
Q ss_pred ----CccEEEEcccccCc-----h----hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGV-----R----YAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~-----~----~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||.... . ...++.+..+++|+.|+.++++++.+... ..+||++||.+.+...
T Consensus 83 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------ 156 (265)
T 1qsg_A 83 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI------ 156 (265)
T ss_dssp TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC------
T ss_pred HHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCC------
Confidence 67999999998642 1 22334567999999999999999977531 1389999997776421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.|+++..........+...+....++
T Consensus 157 ------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~----------- 219 (265)
T 1qsg_A 157 ------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPI----------- 219 (265)
T ss_dssp ------TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT-----------
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCC-----------
Confidence 345789999999999999998875 899999999999998543211122333333322221
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
..+.+++|+|++++.++...... ..|++|++.+|..++
T Consensus 220 -~~~~~~~dva~~v~~l~s~~~~~----------~tG~~~~vdgG~~~~ 257 (265)
T 1qsg_A 220 -RRTVTIEDVGNSAAFLCSDLSAG----------ISGEVVHVDGGFSIA 257 (265)
T ss_dssp -SSCCCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTGGGB
T ss_pred -CCCCCHHHHHHHHHHHhCchhcC----------ccCCEEEECCCcCCC
Confidence 13678999999999988754322 344899999886544
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=210.85 Aligned_cols=229 Identities=14% Similarity=0.054 Sum_probs=171.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKE---KGFKARGLVLNISDIESIQNFFAEIKA 78 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999976544333222221 2357899999999999999988865
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.++.++++++.. .+.+ +||++||...+...
T Consensus 79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 148 (247)
T 3lyl_A 79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWG-RIISIGSVVGSAGN--------- 148 (247)
T ss_dssp TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCe-EEEEEcchhhccCC---------
Confidence 6899999999865422 2334467999999999988887643 3433 89999997765421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.+...|++||.+.+.+++.++.++ |+++++|+||.|.++....- .......+.... ....
T Consensus 149 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~------------~~~~ 211 (247)
T 3lyl_A 149 ---PGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKL--TDEQKSFIATKI------------PSGQ 211 (247)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTS--CHHHHHHHHTTS------------TTCC
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhc--cHHHHHHHhhcC------------CCCC
Confidence 346789999999999999998764 89999999999998754321 122222222221 2234
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
+.+++|+|++++.++...... ..|++|++.+|..+
T Consensus 212 ~~~~~dva~~i~~l~s~~~~~----------~tG~~i~vdgG~~~ 246 (247)
T 3lyl_A 212 IGEPKDIAAAVAFLASEEAKY----------ITGQTLHVNGGMYM 246 (247)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTSSC
T ss_pred CcCHHHHHHHHHHHhCCCcCC----------ccCCEEEECCCEec
Confidence 889999999999988765432 34589999987644
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=213.00 Aligned_cols=223 Identities=16% Similarity=0.135 Sum_probs=159.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+++++|++|||||+|+||+++++.|+++|++|++++|+.+....... ..++.++.+|++|.++++++++.+
T Consensus 22 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~--------~~~~~~~~~Dv~~~~~v~~~~~~~ 93 (260)
T 3gem_A 22 HMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELR--------QAGAVALYGDFSCETGIMAFIDLL 93 (260)
T ss_dssp -----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHH--------HHTCEEEECCTTSHHHHHHHHHHH
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH--------hcCCeEEECCCCCHHHHHHHHHHH
Confidence 456789999999999999999999999999999999998764322111 124789999999999999988765
Q ss_pred -----CccEEEEcccccCchh---hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY---AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~---~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.. .+. .+||++||...+..
T Consensus 94 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~--------- 163 (260)
T 3gem_A 94 KTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEV-ADIVHISDDVTRKG--------- 163 (260)
T ss_dssp HHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGGTC---------
T ss_pred HHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cEEEEECChhhcCC---------
Confidence 6899999999864332 1223357999999999998887743 343 38999999877642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|++||++.+.+++.++.++ ++++++|+||.|.++..... .....+....+. .-
T Consensus 164 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~~----~~~~~~~~~~p~------------~r 224 (260)
T 3gem_A 164 ---SSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDDA----AYRANALAKSAL------------GI 224 (260)
T ss_dssp ---CSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC-------------------CCS------------CC
T ss_pred ---CCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCCH----HHHHHHHhcCCC------------CC
Confidence 1445789999999999999999876 59999999999988743211 112222222211 12
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
+..++|+|++++.+++... ..|+++++.+|..++
T Consensus 225 ~~~~edva~~v~~L~~~~~------------itG~~i~vdGG~~~~ 258 (260)
T 3gem_A 225 EPGAEVIYQSLRYLLDSTY------------VTGTTLTVNGGRHVK 258 (260)
T ss_dssp CCCTHHHHHHHHHHHHCSS------------CCSCEEEESTTTTTC
T ss_pred CCCHHHHHHHHHHHhhCCC------------CCCCEEEECCCcccC
Confidence 5568999999999984322 445899999987654
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-27 Score=221.90 Aligned_cols=235 Identities=17% Similarity=0.229 Sum_probs=171.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC-Cchhh-hHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN-NYYET-SLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+|+|+||||||+||++++++|+++|++|++++|+. ....+ ..... ...+...+++++.+|++|.+++.++++++ |
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~-~~~l~~~~v~~v~~D~~d~~~l~~~~~~~--d 78 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEEL-IDNYQSLGVILLEGDINDHETLVKAIKQV--D 78 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHH-HHHHHHTTCEEEECCTTCHHHHHHHHTTC--S
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHH-HHHHHhCCCEEEEeCCCCHHHHHHHHhCC--C
Confidence 57899999999999999999999999999999976 11111 11111 11122357899999999999999999976 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCC-CChHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTDQP-ASLYAAT 234 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~-~~~Y~~s 234 (424)
+|||+|+... +.++.+++++|++.+ ++ +||+ | +||... ++..+. .| ...| .+
T Consensus 79 ~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~s 132 (307)
T 2gas_A 79 IVICAAGRLL---------------IEDQVKIIKAIKEAGNVK-KFFP-S---EFGLDV----DRHDAV-EPVRQVF-EE 132 (307)
T ss_dssp EEEECSSSSC---------------GGGHHHHHHHHHHHCCCS-EEEC-S---CCSSCT----TSCCCC-TTHHHHH-HH
T ss_pred EEEECCcccc---------------cccHHHHHHHHHhcCCce-EEee-c---ccccCc----ccccCC-CcchhHH-HH
Confidence 9999998643 346788999999998 75 8873 3 455321 122222 23 4578 99
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHH---HHcCCceeEEecCCCCccccccccHHHHHHHHH
Q 042406 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRD---IIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 311 (424)
|.++|.+++. .+++++++||+.++++.... +... ...++.+.++ ++++..+++++++|+|++++
T Consensus 133 K~~~e~~~~~----~~i~~~~lrp~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~ 199 (307)
T 2gas_A 133 KASIRRVIEA----EGVPYTYLCCHAFTGYFLRN------LAQLDATDPPRDKVVIL---GDGNVKGAYVTEADVGTFTI 199 (307)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEETTTTGGG------TTCTTCSSCCSSEEEEE---TTSCSEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEcceeecccccc------ccccccccCCCCeEEEe---cCCCcceEEeeHHHHHHHHH
Confidence 9999988764 38999999999998863211 1100 1133344444 56788899999999999999
Q ss_pred HHhhhccccCCCCCCCCCCCCcceEEcCC-CCcccHHHHHHHHHHHhCccccccccc
Q 042406 312 AGLDTAKKSTGSGGKKKGPAEFRIFNLGN-TTPVPVSRLVSLLEKILKVKAETKVLP 367 (424)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~el~~~i~~~~g~~~~~~~~~ 367 (424)
.++..+.. .+++|++.+ ++.+|+.|+++.+++.+|.+.+....|
T Consensus 200 ~~l~~~~~------------~~~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (307)
T 2gas_A 200 RAANDPNT------------LNKAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVS 244 (307)
T ss_dssp HHHTCGGG------------TTEEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEEC
T ss_pred HHHcCccc------------cCceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecC
Confidence 99987542 127788876 468999999999999999887655443
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=214.11 Aligned_cols=230 Identities=15% Similarity=0.080 Sum_probs=164.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc---
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV--- 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~--- 152 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 94 (273)
T 1ae1_A 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE---KGLNVEGSVCDLLSRTERDKLMQTVAH 94 (273)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999976443332222211 135789999999999999888864
Q ss_pred ---cCccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 153 ---VAFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 153 ---~~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
-++|+||||||...... ..++.+..+++|+.|+.++++++. +.+.+ +||++||...+...
T Consensus 95 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~~~~~~-------- 165 (273)
T 1ae1_A 95 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNG-NVIFLSSIAGFSAL-------- 165 (273)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSE-EEEEECCGGGTSCC--------
T ss_pred HcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcCHhhcCCC--------
Confidence 26799999999854321 223446789999999999988773 34443 99999998887531
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCc----HHHHHHHHHcCCceeEEecCCCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMA----YFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.|++|....... .......+....+
T Consensus 166 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p---------- 231 (273)
T 1ae1_A 166 ----PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTP---------- 231 (273)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHST----------
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCC----------
Confidence 345789999999999999998775 8999999999999985321100 0111222221111
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
...+.+++|+|++++.++...... ..|+++++.+|..
T Consensus 232 --~~r~~~p~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~~ 268 (273)
T 1ae1_A 232 --MGRAGKPQEVSALIAFLCFPAASY----------ITGQIIWADGGFT 268 (273)
T ss_dssp --TCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred --CCCCcCHHHHHHHHHHHhCccccC----------cCCCEEEECCCcc
Confidence 113788999999999888654322 3448999988753
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-26 Score=210.84 Aligned_cols=227 Identities=12% Similarity=0.038 Sum_probs=163.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
....++|+||||||+|+||+++++.|+++|++|++++|+.+........ ...++.++.+|++|.+++.+++++.
T Consensus 9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~ 82 (249)
T 3f9i_A 9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNA------LKDNYTIEVCNLANKEECSNLISKT 82 (249)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH------HCSSEEEEECCTTSHHHHHHHHHTC
T ss_pred cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH------hccCccEEEcCCCCHHHHHHHHHhc
Confidence 4567899999999999999999999999999999999965433222111 1247899999999999999999876
Q ss_pred -CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++. +.+.+ +||++||...+...
T Consensus 83 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~----------- 150 (249)
T 3f9i_A 83 SNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYG-RIINISSIVGIAGN----------- 150 (249)
T ss_dssp SCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCCCC--CC-----------
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-EEEEEccHHhccCC-----------
Confidence 689999999986532 3345668899999999988877764 34433 89999998776421
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
.+...|+.||++.+.+++.++.++ |+++++|+||.|.++..... .......+..+. ....+.
T Consensus 151 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~------------~~~~~~ 215 (249)
T 3f9i_A 151 -PGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKL--NEKQREAIVQKI------------PLGTYG 215 (249)
T ss_dssp -SCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------C--CHHHHHHHHHHC------------TTCSCB
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCccccc--CHHHHHHHHhcC------------CCCCCc
Confidence 345789999999999999998764 89999999999998754321 122222222221 123488
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 302 YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
+++|+|++++.++...... ..|++|++.+|..
T Consensus 216 ~~~dva~~~~~l~s~~~~~----------~tG~~~~vdgG~~ 247 (249)
T 3f9i_A 216 IPEDVAYAVAFLASNNASY----------ITGQTLHVNGGML 247 (249)
T ss_dssp CHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTSS
T ss_pred CHHHHHHHHHHHcCCccCC----------ccCcEEEECCCEe
Confidence 8999999999998765432 3458999998753
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=214.92 Aligned_cols=229 Identities=12% Similarity=0.111 Sum_probs=170.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|++|||||+|+||++++++|+++|++|++++|+.+..+........ ...++.++.+|++|.++++++++.+
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTD---TGRRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999976544443333222 2457899999999999999988865
Q ss_pred ---CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||.... ....++.+..+++|+.|+.++++++.. .+ .+||++||...+..
T Consensus 85 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~--------- 153 (264)
T 3ucx_A 85 AYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNSMVVRHS--------- 153 (264)
T ss_dssp HTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECCGGGGCC---------
T ss_pred HcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECcchhccC---------
Confidence 78999999987532 112234467899999999999887643 33 39999999877642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCC---------CcHHHHHHHHHcCCceeEEe
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPD---------MAYFFFTRDIIRGKRITVYE 289 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 289 (424)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|++|..... .....+...+..+.
T Consensus 154 ---~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 224 (264)
T 3ucx_A 154 ---QAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGS------ 224 (264)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTTS------
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhccC------
Confidence 144578999999999999999887 489999999999998732100 00111222222221
Q ss_pred cCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 290 APDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 290 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
....+.+++|+|++++.++...... ..|+++++.+|..
T Consensus 225 ------p~~r~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~~ 262 (264)
T 3ucx_A 225 ------DLKRLPTEDEVASAILFMASDLASG----------ITGQALDVNCGEY 262 (264)
T ss_dssp ------SSSSCCBHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTSS
T ss_pred ------CcccCCCHHHHHHHHHHHcCccccC----------CCCCEEEECCCcc
Confidence 2234789999999999988765432 4458999998863
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-27 Score=215.64 Aligned_cols=232 Identities=14% Similarity=0.036 Sum_probs=173.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||++++++|+++|++|++++|+.+........ . ..++.++.+|++|.++++++++.+
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~-----~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREE-----F-GPRVHALRSDIADLNEIAVLGAAAGQ 78 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----H-GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-----h-CCcceEEEccCCCHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999975433222211 1 357899999999999999888765
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++..... ..+||++||...+...
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 146 (255)
T 4eso_A 79 TLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGH------------ 146 (255)
T ss_dssp HHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBC------------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCC------------
Confidence 6899999999865322 2334467899999999999999876421 2389999998776531
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcH----HHHHHHHHcCCceeEEecCCCCcccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAY----FFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.|.+|........ ..+........+ ..
T Consensus 147 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p------------~~ 214 (255)
T 4eso_A 147 PGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITP------------MK 214 (255)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHST------------TS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCC------------CC
Confidence 346789999999999999999875 89999999999999854321111 112222222111 12
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHH
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSR 348 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e 348 (424)
.+.+++|+|++++.++.. ... ..|+++++.+|...++.+
T Consensus 215 r~~~pedvA~~v~~L~s~-~~~----------itG~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 215 RNGTADEVARAVLFLAFE-ATF----------TTGAKLAVDGGLGQKLST 253 (255)
T ss_dssp SCBCHHHHHHHHHHHHHT-CTT----------CCSCEEEESTTTTTTBCC
T ss_pred CCcCHHHHHHHHHHHcCc-CcC----------ccCCEEEECCCccccCcC
Confidence 367899999999988875 221 345899999987766544
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-26 Score=213.89 Aligned_cols=229 Identities=13% Similarity=0.078 Sum_probs=167.9
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+++|+++||||+ |+||+++++.|+++|++|++++|+.+ ........... ..++.++.+|++|.++++++++.+
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~ 93 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKG---FGSDLVVKCDVSLDEDIKNLKKFL 93 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHH
Confidence 3678999999999 99999999999999999999999763 22222222211 124789999999999999988765
Q ss_pred -----CccEEEEcccccCc--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEecCCcccCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGV--------RYAMQNPNSYVESNIAGFVNLLETCKSSDP--QPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~--~~~~v~~SS~~vyg~~~~~~~ 218 (424)
++|+||||||.... ....++.+..+++|+.|+.++++++..... .++||++||.+.+...
T Consensus 94 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~----- 168 (285)
T 2p91_A 94 EENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVV----- 168 (285)
T ss_dssp HHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBC-----
T ss_pred HHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCC-----
Confidence 68999999998643 112233467999999999999999876532 2499999997765421
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.|+++..........+...+....+.
T Consensus 169 -------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~---------- 231 (285)
T 2p91_A 169 -------PHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPF---------- 231 (285)
T ss_dssp -------TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHSTT----------
T ss_pred -------CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCCC----------
Confidence 345789999999999999998775 899999999999998643211122333333222211
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+.+++|+|++++.++...... ..|++|++.+|.
T Consensus 232 --~~~~~~~dva~~~~~l~s~~~~~----------~tG~~~~vdgg~ 266 (285)
T 2p91_A 232 --GKPITIEDVGDTAVFLCSDWARA----------ITGEVVHVDNGY 266 (285)
T ss_dssp --SSCCCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTG
T ss_pred --CCCcCHHHHHHHHHHHcCCcccC----------CCCCEEEECCCc
Confidence 12678999999999988654321 334899998874
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=216.33 Aligned_cols=235 Identities=13% Similarity=0.072 Sum_probs=173.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|++|||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (280)
T 3tox_A 5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAG---GGGEAAALAGDVGDEALHEALVELAVR 81 (280)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTT---TTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999976544333322211 2457899999999999999988865
Q ss_pred ---CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||+... ....++.+..+++|+.|+.++++++.. .+. .+||++||...+..
T Consensus 82 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~--------- 151 (280)
T 3tox_A 82 RFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGG-GSLTFTSSFVGHTA--------- 151 (280)
T ss_dssp HHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCSBTTTB---------
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEcChhhCcC---------
Confidence 68999999997532 122334567999999999998887643 343 39999999877621
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC--CcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD--MAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
...+...|++||++.+.+++.++.++ |+++++|+||.|.+|..... ...+.....+....+
T Consensus 152 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p------------ 217 (280)
T 3tox_A 152 --GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHA------------ 217 (280)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTST------------
T ss_pred --CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCc------------
Confidence 11446789999999999999999875 89999999999999854210 001122222322221
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHH
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVS 347 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~ 347 (424)
...+.+++|+|++++.++...... ..|+++++.+|..++..
T Consensus 218 ~~r~~~pedvA~~v~~L~s~~a~~----------itG~~i~vdGG~~~~~~ 258 (280)
T 3tox_A 218 LKRIARPEEIAEAALYLASDGASF----------VTGAALLADGGASVTKA 258 (280)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGCC-
T ss_pred cCCCcCHHHHHHHHHHHhCccccC----------CcCcEEEECCCcccccc
Confidence 223788999999999998765432 44589999998766543
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=213.96 Aligned_cols=232 Identities=14% Similarity=0.064 Sum_probs=167.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
..+|+++||||+|+||++++++|+++|++|++++|+............. ....++.++.+|++|.++++++++.+
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 82 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYK--DVEERLQFVQADVTKKEDLHKIVEEAMSH 82 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTG--GGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHH--hcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999998876543332222211 12357999999999999999998865
Q ss_pred --CccEEEEccccc--Cc----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQA--GV----RYAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 --~~d~vi~~Ag~~--~~----~~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||.. .. ....++.+..+++|+.|+.++++++ ++.+.+ +||++||.+.++..
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~iss~~~~~~~-------- 153 (264)
T 3i4f_A 83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFG-RIINYGFQGADSAP-------- 153 (264)
T ss_dssp HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTTGGGCC--------
T ss_pred hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCC-eEEEEeechhcccC--------
Confidence 789999999942 11 1122334678999999999998887 555544 89999998655321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
...+...|++||++.+.+++.++.+ .|+++++|+||.|+++..... ........... ....
T Consensus 154 --~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~------------~p~~ 217 (264)
T 3i4f_A 154 --GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEAT--IQEARQLKEHN------------TPIG 217 (264)
T ss_dssp --CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSCC--HHHHHHC--------------------
T ss_pred --CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchhc--cHHHHHHHhhc------------CCCC
Confidence 1145578999999999999999877 489999999999999854321 22221111111 1122
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
.+.+++|+|++++.++...... ..|+++++.+|-...
T Consensus 218 r~~~~~dva~~v~~l~s~~~~~----------itG~~i~vdGG~~~~ 254 (264)
T 3i4f_A 218 RSGTGEDIARTISFLCEDDSDM----------ITGTIIEVTGAVDVI 254 (264)
T ss_dssp CCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESCSCCCC
T ss_pred CCcCHHHHHHHHHHHcCcccCC----------CCCcEEEEcCceeec
Confidence 3788999999999998765432 345899999876543
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=213.07 Aligned_cols=229 Identities=13% Similarity=0.084 Sum_probs=168.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|++|||||+|+||++++++|+++|++|++++|.............. ....++.++.+|++|.++++++++.+
T Consensus 24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~d~~~v~~~~~~~~ 101 (269)
T 4dmm_A 24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIA--AAGGEAFAVKADVSQESEVEALFAAVI 101 (269)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH--HTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHH--hcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999854322221111111 12457899999999999999988865
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++. +.+.+ +||++||...+...
T Consensus 102 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 172 (269)
T 4dmm_A 102 ERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSG-RIINIASVVGEMGN-------- 172 (269)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCHHHHHCC--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECchhhcCCC--------
Confidence 7899999999865322 233446799999999998888763 34443 99999997665321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.....|++||++.+.+++.++.++ |+++++|+||.|.++.... .....+....+ ..
T Consensus 173 ----~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-----~~~~~~~~~~p------------~~ 231 (269)
T 4dmm_A 173 ----PGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSE-----LAAEKLLEVIP------------LG 231 (269)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCH-----HHHHHHGGGCT------------TS
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccc-----ccHHHHHhcCC------------CC
Confidence 345789999999999999998764 8999999999999885431 11122222211 22
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
.+.+++|+|++++.++..+.... ..|+++++.+|..+
T Consensus 232 r~~~~~dvA~~v~~l~s~~~~~~---------itG~~i~vdGG~~~ 268 (269)
T 4dmm_A 232 RYGEAAEVAGVVRFLAADPAAAY---------ITGQVINIDGGLVM 268 (269)
T ss_dssp SCBCHHHHHHHHHHHHHCGGGGG---------CCSCEEEESTTSCC
T ss_pred CCCCHHHHHHHHHHHhCCcccCC---------CcCCEEEECCCeec
Confidence 37889999999999988643211 34589999988654
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=211.08 Aligned_cols=225 Identities=10% Similarity=0.096 Sum_probs=155.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-eCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGL-DNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++|+|+||||+|+||++++++|+++|++|+++ .|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKA---AGINVVVAKGDVKNPEDVENMVKTAMD 79 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHH---TTCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999 5554433322222111 2357899999999999999988854
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCc-ccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSS-VYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~-vyg~~~~~~~~e~ 221 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.+ .+.+ +||++||.. .|+.
T Consensus 80 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~--------- 149 (247)
T 2hq1_A 80 AFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSG-KIINITSIAGIIGN--------- 149 (247)
T ss_dssp HHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCE-EEEEECC----------------
T ss_pred hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcChhhccCC---------
Confidence 679999999986432 23445678999999998888777653 4444 999999964 4442
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.+...|+.||++.|.+++.++.++ |+++++++||.+.++.... ....+...+..+. ...
T Consensus 150 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~------------~~~ 211 (247)
T 2hq1_A 150 ----AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDV--LPDKVKEMYLNNI------------PLK 211 (247)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT--SCHHHHHHHHTTS------------TTS
T ss_pred ----CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhh--cchHHHHHHHhhC------------CCC
Confidence 345789999999999999998775 8999999999998763211 1112222222221 123
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+++++|+|++++.++..+... ..|++|++.+|.
T Consensus 212 ~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~ 245 (247)
T 2hq1_A 212 RFGTPEEVANVVGFLASDDSNY----------ITGQVINIDGGL 245 (247)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred CCCCHHHHHHHHHHHcCccccc----------ccCcEEEeCCCc
Confidence 4889999999999888764321 234899998874
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=214.60 Aligned_cols=234 Identities=14% Similarity=0.070 Sum_probs=161.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+++++|+++||||+|+||++++++|+++|++|++++|+.+..+..... ....+.++.+|++|.++++++++.+
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGE------IGDAALAVAADISKEADVDAAVEAAL 78 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH------HCTTEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH------hCCceEEEEecCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999975443332221 1357899999999999999988865
Q ss_pred ----CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHHHhcC-------CCCeEEEecCCcccCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETCKSSD-------PQPAIVWASSSSVYGVNKKVP 217 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~~~~~-------~~~~~v~~SS~~vyg~~~~~~ 217 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.... ...+||++||...+..
T Consensus 79 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~----- 153 (261)
T 3n74_A 79 SKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRP----- 153 (261)
T ss_dssp HHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSC-----
T ss_pred HhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCC-----
Confidence 789999999986421 1223346789999999888877764321 1236999999877642
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
......|++||++.+.+++.++.++ |+++++|+||.+.++.... +...... .....+ ...
T Consensus 154 -------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~------~~~~~~~-~~~~~~---~~~ 216 (261)
T 3n74_A 154 -------RPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTT------FMGEDSE-EIRKKF---RDS 216 (261)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------------
T ss_pred -------CCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhh------hcccCcH-HHHHHH---hhc
Confidence 1345779999999999999998874 8999999999999874321 1000000 000001 112
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccH
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPV 346 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 346 (424)
.....+++++|+|++++.++...... ..|+++++.+|..++.
T Consensus 217 ~~~~~~~~~~dva~~~~~l~s~~~~~----------itG~~i~vdgG~~~~~ 258 (261)
T 3n74_A 217 IPMGRLLKPDDLAEAAAFLCSPQASM----------ITGVALDVDGGRSIGG 258 (261)
T ss_dssp CTTSSCCCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTTTC--
T ss_pred CCcCCCcCHHHHHHHHHHHcCCcccC----------cCCcEEEecCCcccCC
Confidence 22345899999999999988654432 4458999999876654
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-27 Score=224.02 Aligned_cols=236 Identities=14% Similarity=0.156 Sum_probs=172.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC-CchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN-NYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.+|+|+||||+|+||++++++|+++|++|++++|+. +......... ...+...+++++.+|++|.+++.++++++ |
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-l~~~~~~~v~~v~~D~~d~~~l~~a~~~~--d 79 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQL-REEFRSMGVTIIEGEMEEHEKMVSVLKQV--D 79 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHH-HHHHHHTTCEEEECCTTCHHHHHHHHTTC--S
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHH-HHHhhcCCcEEEEecCCCHHHHHHHHcCC--C
Confidence 357899999999999999999999999999999976 2211111111 11112357999999999999999999976 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCC-CChHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTDQP-ASLYAAT 234 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~-~~~Y~~s 234 (424)
+|||+|+... +.++.+++++|++.+ ++ +||+ | +||... ++..+. .| .+.| .+
T Consensus 80 ~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~s 133 (321)
T 3c1o_A 80 IVISALPFPM---------------ISSQIHIINAIKAAGNIK-RFLP-S---DFGCEE----DRIKPL-PPFESVL-EK 133 (321)
T ss_dssp EEEECCCGGG---------------SGGGHHHHHHHHHHCCCC-EEEC-S---CCSSCG----GGCCCC-HHHHHHH-HH
T ss_pred EEEECCCccc---------------hhhHHHHHHHHHHhCCcc-EEec-c---ccccCc----cccccC-CCcchHH-HH
Confidence 9999998632 456789999999998 75 8872 3 455321 222221 22 4579 99
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHH---HHHcCCceeEEecCCCCccccccccHHHHHHHHH
Q 042406 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTR---DIIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 311 (424)
|.++|.+++. .++++++|||+.++++. ...+.. ....++.+.++ ++++..++++|++|+|++++
T Consensus 134 K~~~e~~~~~----~~~~~~~lrp~~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~ 200 (321)
T 3c1o_A 134 KRIIRRAIEA----AALPYTYVSANCFGAYF------VNYLLHPSPHPNRNDDIVIY---GTGETKFVLNYEEDIAKYTI 200 (321)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEEHHHH------HHHHHCCCSSCCTTSCEEEE---TTSCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEeceecccc------ccccccccccccccCceEEe---cCCCcceeEeeHHHHHHHHH
Confidence 9999988864 38999999999988751 111111 01233445555 56788999999999999999
Q ss_pred HHhhhccccCCCCCCCCCCCCcceEEcCC-CCcccHHHHHHHHHHHhCccccccccc
Q 042406 312 AGLDTAKKSTGSGGKKKGPAEFRIFNLGN-TTPVPVSRLVSLLEKILKVKAETKVLP 367 (424)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~el~~~i~~~~g~~~~~~~~~ 367 (424)
.++..+.. .+++|++.+ ++.+|+.|+++.+.+.+|.+.++...+
T Consensus 201 ~~l~~~~~------------~g~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~ 245 (321)
T 3c1o_A 201 KVACDPRC------------CNRIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMP 245 (321)
T ss_dssp HHHHCGGG------------TTEEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEEC
T ss_pred HHHhCccc------------cCeEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCC
Confidence 99987542 127888876 578999999999999999887655443
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-26 Score=209.20 Aligned_cols=227 Identities=16% Similarity=0.089 Sum_probs=155.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+. ...++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~~D~~d~~~~~~~~~~~~~ 70 (250)
T 2fwm_X 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ-------------EQYPFATEVMDVADAAQVAQVCQRLLA 70 (250)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS-------------SCCSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh-------------hcCCceEEEcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999996541 0113789999999999999988754
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+..
T Consensus 71 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~~~~~---------- 139 (250)
T 2fwm_X 71 ETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGG-AIVTVASDAAHTP---------- 139 (250)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSC----------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCC-EEEEECchhhCCC----------
Confidence 6799999999854321 23345679999999999988877 444544 9999999877642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHH-HHHcCCceeEEecCCCCcccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTR-DIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 298 (424)
..+...|++||.+.+.+++.++.++ |+++++|+||.++++............. .+.... ..+ .......
T Consensus 140 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~p~~ 212 (250)
T 2fwm_X 140 --RIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFG--EQF---KLGIPLG 212 (250)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC--------------------------------------
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHhhhh--hcc---cccCCCC
Confidence 1345789999999999999998774 8999999999999985321100000000 000000 000 0001112
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
.+.+.+|+|++++.++...... ..|+++++.+|..
T Consensus 213 ~~~~p~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~~ 247 (250)
T 2fwm_X 213 KIARPQEIANTILFLASDLASH----------ITLQDIVVDGGST 247 (250)
T ss_dssp ---CHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred CCcCHHHHHHHHHHHhCccccC----------CCCCEEEECCCcc
Confidence 3789999999999988765422 3448999988754
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=215.92 Aligned_cols=230 Identities=14% Similarity=0.071 Sum_probs=166.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|++|||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (279)
T 3sju_A 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRA---AGHDVDGSSCDVTSTDEVHAAVAAAV 96 (279)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT---TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999976544443332222 2457899999999999999988765
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh------cCCCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS------SDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~------~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.. .+.+ +||++||...+..
T Consensus 97 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g-~iV~isS~~~~~~------- 168 (279)
T 3sju_A 97 ERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWG-RIVNIASTGGKQG------- 168 (279)
T ss_dssp HHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCE-EEEEECCGGGTSC-------
T ss_pred HHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCc-EEEEECChhhccC-------
Confidence 6899999999865322 2223457899999999999887654 3433 8999999877642
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC---------CCcHHHHHHHHHcCCceeE
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRP---------DMAYFFFTRDIIRGKRITV 287 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~---------~~~~~~~~~~~~~~~~~~~ 287 (424)
..+...|++||++.+.+++.++.+ .|+++++|+||.|.++.... ..........+....
T Consensus 169 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 239 (279)
T 3sju_A 169 -----VMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKI---- 239 (279)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTC----
T ss_pred -----CCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcC----
Confidence 144578999999999999999987 48999999999998762110 000112222222221
Q ss_pred EecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 288 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
....+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 240 --------p~~r~~~pedvA~~v~~L~s~~a~~----------itG~~i~vdGG~ 276 (279)
T 3sju_A 240 --------PLGRYSTPEEVAGLVGYLVTDAAAS----------ITAQALNVCGGL 276 (279)
T ss_dssp --------TTSSCBCHHHHHHHHHHHTSSGGGG----------CCSCEEEESTTC
T ss_pred --------CCCCCCCHHHHHHHHHHHhCccccC----------cCCcEEEECCCc
Confidence 1234788999999999888765432 445899998875
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=216.24 Aligned_cols=240 Identities=11% Similarity=0.058 Sum_probs=174.8
Q ss_pred CCCCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh
Q 042406 74 PRSTRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 74 ~~~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
....++|+||||||+ |+||++++++|+++|++|++++|+... ......... ....+.++.+|++|.++++++++
T Consensus 9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~ 84 (271)
T 3ek2_A 9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRF-KDRITEFAA---EFGSELVFPCDVADDAQIDALFA 84 (271)
T ss_dssp CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG-HHHHHHHHH---HTTCCCEEECCTTCHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhh-HHHHHHHHH---HcCCcEEEECCCCCHHHHHHHHH
Confidence 456789999999999 999999999999999999999997432 222222211 12358899999999999999988
Q ss_pred cc-----CccEEEEcccccCch---------hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCC
Q 042406 152 VV-----AFTHVMHLAAQAGVR---------YAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKV 216 (424)
Q Consensus 152 ~~-----~~d~vi~~Ag~~~~~---------~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~ 216 (424)
.+ ++|+||||||..... ...++.+..+++|+.++.++++++..... ..+||++||.+.+..
T Consensus 85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~---- 160 (271)
T 3ek2_A 85 SLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERA---- 160 (271)
T ss_dssp HHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSB----
T ss_pred HHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccC----
Confidence 66 789999999986531 22334467999999999999999876521 238999999877642
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCC
Q 042406 217 PFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 217 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++..........+...+....+.
T Consensus 161 --------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~-------- 224 (271)
T 3ek2_A 161 --------IPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPL-------- 224 (271)
T ss_dssp --------CTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHSTT--------
T ss_pred --------CCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcCCc--------
Confidence 1456889999999999999998775 899999999999987544321122333333332221
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHH
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVS 351 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~ 351 (424)
..+..++|+|++++.++...... ..|+++++.+|..+++.++.+
T Consensus 225 ----~~~~~pedva~~i~~l~s~~~~~----------~tG~~i~vdgG~~~~~~~~~~ 268 (271)
T 3ek2_A 225 ----KRNVTIEQVGNAGAFLLSDLASG----------VTAEVMHVDSGFNAVVGGMAG 268 (271)
T ss_dssp ----SSCCCHHHHHHHHHHHHSGGGTT----------CCSEEEEESTTGGGBCCCC--
T ss_pred ----CCCCCHHHHHHHHHHHcCcccCC----------eeeeEEEECCCeeeehhhhhh
Confidence 23678999999999998765432 445999999998888776654
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=212.76 Aligned_cols=234 Identities=15% Similarity=0.132 Sum_probs=166.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+........... .....++.++.+|++|.++++++++.+
T Consensus 10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 88 (267)
T 1iy8_A 10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLE-TAPDAEVLTTVADVSDEAQVEAYVTATTE 88 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-HCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-hcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999976543332222211 111457899999999999999988765
Q ss_pred ---CccEEEEcccccCc-h----hhccChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-R----YAMQNPNSYVESNIAGFVNLLE----TCKSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-~----~~~~~~~~~~~~N~~g~~~ll~----a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||.... . ...++.+..+++|+.|+.++++ .+++.+.+ +||++||...+...
T Consensus 89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 159 (267)
T 1iy8_A 89 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSG-MVVNTASVGGIRGI-------- 159 (267)
T ss_dssp HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSBC--------
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEEcchhhccCC--------
Confidence 67999999997543 1 1223346789999999876555 44555544 99999998765421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC------CCcHHHHHHHHHcCCceeEEecCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP------DMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
.+...|++||.+.+.+++.++.++ |+++++|+||.|+++.... ..........+....
T Consensus 160 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 226 (267)
T 1iy8_A 160 ----GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN--------- 226 (267)
T ss_dssp ----SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC---------
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccC---------
Confidence 345789999999999999998764 8999999999999863110 000000000111111
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
....+.+++|+|++++.++..+... ..|+++++.+|...+
T Consensus 227 ---p~~r~~~~~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~~~~ 266 (267)
T 1iy8_A 227 ---PSKRYGEAPEIAAVVAFLLSDDASY----------VNATVVPIDGGQSAA 266 (267)
T ss_dssp ---TTCSCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTTTTB
T ss_pred ---CCCCCcCHHHHHHHHHHHcCccccC----------CCCCEEEECCCcccC
Confidence 1123789999999999988655322 344899999886543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=224.51 Aligned_cols=238 Identities=18% Similarity=0.207 Sum_probs=172.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch-hhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY-ETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+|+|+||||||+||+++++.|+++|++|++++|+.+.. ...... ....+...+++++.+|++|.+++.++++++ |+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~-~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~--d~ 80 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQ-LLESFKASGANIVHGSIDDHASLVEAVKNV--DV 80 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHH-HHHHHHTTTCEEECCCTTCHHHHHHHHHTC--SE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHH-HHHHHHhCCCEEEEeccCCHHHHHHHHcCC--CE
Confidence 57899999999999999999999999999999976432 111111 111223468999999999999999999976 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCC-CChHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTDQP-ASLYAATK 235 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~-~~~Y~~sK 235 (424)
|||+|+... +.++.+++++|++.+ ++ +||+ |+ ||... .+..+. .| ...| .+|
T Consensus 81 vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S~---~g~~~----~~~~~~-~p~~~~y-~sK 134 (308)
T 1qyc_A 81 VISTVGSLQ---------------IESQVNIIKAIKEVGTVK-RFFP-SE---FGNDV----DNVHAV-EPAKSVF-EVK 134 (308)
T ss_dssp EEECCCGGG---------------SGGGHHHHHHHHHHCCCS-EEEC-SC---CSSCT----TSCCCC-TTHHHHH-HHH
T ss_pred EEECCcchh---------------hhhHHHHHHHHHhcCCCc-eEee-cc---cccCc----cccccC-CcchhHH-HHH
Confidence 999998632 345789999999998 75 8873 43 55321 122222 23 3568 999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhh
Q 042406 236 KAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315 (424)
Q Consensus 236 ~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 315 (424)
.++|.++++ .+++++++||+.++|+....- .. .......++.+.++ ++++..++|+|++|+|++++.++.
T Consensus 135 ~~~e~~~~~----~~~~~~~~r~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~~~l~ 204 (308)
T 1qyc_A 135 AKVRRAIEA----EGIPYTYVSSNCFAGYFLRSL--AQ-AGLTAPPRDKVVIL---GDGNARVVFVKEEDIGTFTIKAVD 204 (308)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEEHHHHTTTT--TC-TTCSSCCSSEEEEE---TTSCCEEEEECHHHHHHHHHTTSS
T ss_pred HHHHHHHHh----cCCCeEEEEeceecccccccc--cc-ccccCCCCCceEEe---cCCCceEEEecHHHHHHHHHHHHh
Confidence 999988865 389999999999988532210 00 00001133445554 577889999999999999999987
Q ss_pred hccccCCCCCCCCCCCCcceEEcCC-CCcccHHHHHHHHHHHhCccccccccc
Q 042406 316 TAKKSTGSGGKKKGPAEFRIFNLGN-TTPVPVSRLVSLLEKILKVKAETKVLP 367 (424)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~el~~~i~~~~g~~~~~~~~~ 367 (424)
.+.. .+++|++.+ ++.+|+.|+++.+.+.+|.+.+....|
T Consensus 205 ~~~~------------~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 245 (308)
T 1qyc_A 205 DPRT------------LNKTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 245 (308)
T ss_dssp CGGG------------TTEEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred Cccc------------cCeEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCC
Confidence 6542 237888876 478999999999999999887655443
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=211.18 Aligned_cols=230 Identities=14% Similarity=0.062 Sum_probs=164.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+. ...... .. . .++.+|++|.++++++++.+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~-----~~--~-~~~~~D~~~~~~~~~~~~~~~~ 73 (256)
T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEA-----IG--G-AFFQVDLEDERERVRFVEEAAY 73 (256)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHH-----HT--C-EEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHH-----hh--C-CEEEeeCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999997654 221111 11 4 78999999999999888765
Q ss_pred ---CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||....... .++.+..+++|+.|+.++++++.. .+. ++||++||...+...
T Consensus 74 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~--------- 143 (256)
T 2d1y_A 74 ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGG-GAIVNVASVQGLFAE--------- 143 (256)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSBC---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEccccccCCC---------
Confidence 68999999998643221 223467999999999999887643 343 399999998765321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHH-cCCceeEEecCCCCcccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDII-RGKRITVYEAPDGASVAR 298 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 298 (424)
.+...|+.||++.+.+++.++.++ |+++++|+||.+.++.. ..+..... .......+ .......
T Consensus 144 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~------~~~~~~~~~~~~~~~~~---~~~~~~~ 211 (256)
T 2d1y_A 144 ---QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAV------LEAIALSPDPERTRRDW---EDLHALR 211 (256)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH------HHHHC--------CHHH---HTTSTTS
T ss_pred ---CCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchh------hhccccccCCHHHHHHH---HhcCCCC
Confidence 345789999999999999998775 89999999999987521 01100000 00000000 0112234
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccH
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPV 346 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 346 (424)
.+++++|+|++++.++...... ..|++|++.+|...++
T Consensus 212 ~~~~~~dvA~~~~~l~s~~~~~----------~~G~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 212 RLGKPEEVAEAVLFLASEKASF----------ITGAILPVDGGMTASF 249 (256)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGBC
T ss_pred CCcCHHHHHHHHHHHhCchhcC----------CCCCEEEECCCccccc
Confidence 5899999999999988765322 3348999999876554
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=217.83 Aligned_cols=234 Identities=16% Similarity=0.053 Sum_probs=169.0
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|+++||||+|+||++++++|+++|++|++++|+.+..+.. ... . ..++.++.+|++|.++++++++.+
T Consensus 12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~----~~~-~-~~~~~~~~~Dl~d~~~v~~~~~~~~ 85 (291)
T 3rd5_A 12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAA----ART-M-AGQVEVRELDLQDLSSVRRFADGVS 85 (291)
T ss_dssp CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----HTT-S-SSEEEEEECCTTCHHHHHHHHHTCC
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH----HHH-h-cCCeeEEEcCCCCHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999965432221 111 1 357899999999999999999977
Q ss_pred CccEEEEcccccCch--hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCC-CCCCCCCCCCCCCCCCh
Q 042406 154 AFTHVMHLAAQAGVR--YAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVN-KKVPFSEKDRTDQPASL 230 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~--~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~-~~~~~~e~~~~~~~~~~ 230 (424)
++|+||||||+.... ...++.+..+++|+.|+.++++++.....+ +||++||...+... ...+..++..+..+...
T Consensus 86 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
T 3rd5_A 86 GADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSSMAHWPGRINLEDLNWRSRRYSPWLA 164 (291)
T ss_dssp CEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECCGGGTTCCCCSSCTTCSSSCCCHHHH
T ss_pred CCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeechhhccCCCCcccccccccCCCCcch
Confidence 789999999986532 234566789999999999999999988765 99999998877432 22222222223355678
Q ss_pred HHHHHHHHHHHHHHHHHHh---C--CcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHH
Q 042406 231 YAATKKAGEAIAHAYNHIY---G--LSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDD 305 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~~---~--i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 305 (424)
|++||++.+.+++.++.++ | +++++|+||.|.++..... ...+...+. ..+ ..+-..+.+|
T Consensus 165 Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~--~~~~~~~~~-~~~-----------~~~~~~~~~~ 230 (291)
T 3rd5_A 165 YSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGAS--GRKLGDALM-SAA-----------TRVVATDADF 230 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC----------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCcccccccc--chHHHHHHH-HHH-----------HHHHhCCHHH
Confidence 9999999999999998775 5 9999999999988754321 001111111 000 1112345899
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 306 IVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 306 va~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
+|++++.++..+. ..|+.|++.+|
T Consensus 231 ~A~~~~~l~~~~~------------~~G~~~~vdgG 254 (291)
T 3rd5_A 231 GARQTLYAASQDL------------PGDSFVGPRFG 254 (291)
T ss_dssp HHHHHHHHHHSCC------------CTTCEEEETTS
T ss_pred HHHHHHHHHcCCC------------CCCceeCCccc
Confidence 9999999988742 23478887654
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-27 Score=217.10 Aligned_cols=231 Identities=13% Similarity=0.061 Sum_probs=170.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
...+++|++|||||+|+||++++++|+++|++|++++|+.+..+........ ...++.++.+|++|.++++++++.+
T Consensus 23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~ 99 (270)
T 3ftp_A 23 DKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQ---AGLEGRGAVLNVNDATAVDALVEST 99 (270)
T ss_dssp CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH---HTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEEeCCCHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999976544333222221 2357889999999999999988865
Q ss_pred -----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||+..... ..++.+..+++|+.|+.++++++.. .+. .+||++||...+..
T Consensus 100 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~-------- 170 (270)
T 3ftp_A 100 LKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARG-GRIVNITSVVGSAG-------- 170 (270)
T ss_dssp HHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHC--------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEECchhhCCC--------
Confidence 6899999999865422 2334467999999999999887743 333 38999999766532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++.... ........+.... ..
T Consensus 171 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~------------p~ 232 (270)
T 3ftp_A 171 ----NPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKG--LPQEQQTALKTQI------------PL 232 (270)
T ss_dssp ----CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHH--SCHHHHHHHHTTC------------TT
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhh--cCHHHHHHHHhcC------------CC
Confidence 1345789999999999999998874 8999999999998763210 0011222222221 12
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
..+.+++|+|++++.++...... ..|+++++.+|..+
T Consensus 233 ~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~~ 269 (270)
T 3ftp_A 233 GRLGSPEDIAHAVAFLASPQAGY----------ITGTTLHVNGGMFM 269 (270)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTSSC
T ss_pred CCCCCHHHHHHHHHHHhCCCcCC----------ccCcEEEECCCccc
Confidence 34788999999999888654432 44589999988654
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-27 Score=219.05 Aligned_cols=236 Identities=10% Similarity=0.034 Sum_probs=173.1
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+..+++|++|||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|++|.++++++++.+
T Consensus 22 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~ 99 (277)
T 4fc7_A 22 PDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAG--ATGRRCLPLSMDVRAPPAVMAAVDQA 99 (277)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH--HHSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4457899999999999999999999999999999999976544433332221 12457899999999999999988865
Q ss_pred -----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.. .+. .+||++||...+...
T Consensus 100 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 171 (277)
T 4fc7_A 100 LKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHG-GVIVNITATLGNRGQ------- 171 (277)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECCSHHHHTC-------
T ss_pred HHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEECchhhCCCC-------
Confidence 789999999975432 12334467999999999999888743 333 389999998765321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC-CcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD-MAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.....|++||++.+.+++.++.++ |+++++|+||.|.++..... ..............++
T Consensus 172 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~----------- 235 (277)
T 4fc7_A 172 -----ALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPL----------- 235 (277)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTSTT-----------
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccCCC-----------
Confidence 345789999999999999998875 89999999999998731100 0001122223332221
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccH
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPV 346 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 346 (424)
..+.+++|+|++++.++...... ..|+++++.+|..+++
T Consensus 236 -~r~~~p~dvA~~v~fL~s~~~~~----------itG~~i~vdGG~~~~~ 274 (277)
T 4fc7_A 236 -QRLGNKTEIAHSVLYLASPLASY----------VTGAVLVADGGAWLTF 274 (277)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTHHHHC
T ss_pred -CCCcCHHHHHHHHHHHcCCccCC----------cCCCEEEECCCcccCC
Confidence 23778999999999988765432 4458999998865543
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-26 Score=213.79 Aligned_cols=228 Identities=9% Similarity=0.003 Sum_probs=166.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeC-CCCchhhhHHHHHhhhhccCCeEEEEccCCCH----HHHHHHh
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN-FNNYYETSLKKARKGLLERAGVFVIDADINDK----SLLDKIF 150 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~----~~v~~~~ 150 (424)
.+++|+++||||+|+||++++++|+++|++|++++| +.+........... ....++.++.+|++|. +++++++
T Consensus 8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 85 (276)
T 1mxh_A 8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNA--ARAGSAVLCKGDLSLSSSLLDCCEDII 85 (276)
T ss_dssp ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--HSTTCEEEEECCCSSSTTHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHH--hcCCceEEEeccCCCccccHHHHHHHH
Confidence 357899999999999999999999999999999999 54433322222211 1135789999999999 9998888
Q ss_pred hcc-----CccEEEEcccccCchh----hc-----------cChHHHHHHHHHHHHHHHHHHHhcCC--C------CeEE
Q 042406 151 NVV-----AFTHVMHLAAQAGVRY----AM-----------QNPNSYVESNIAGFVNLLETCKSSDP--Q------PAIV 202 (424)
Q Consensus 151 ~~~-----~~d~vi~~Ag~~~~~~----~~-----------~~~~~~~~~N~~g~~~ll~a~~~~~~--~------~~~v 202 (424)
+.+ ++|+||||||...... .. ++.+..+++|+.|+.++++++.+... . ++||
T Consensus 86 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv 165 (276)
T 1mxh_A 86 DCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVV 165 (276)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEE
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEE
Confidence 754 6799999999754321 11 33457899999999999999877431 1 4899
Q ss_pred EecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHH
Q 042406 203 WASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDI 279 (424)
Q Consensus 203 ~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~ 279 (424)
++||...+.. ..+...|++||++.+.+++.++.++ |+++++|+||.|++| .. ....+...+
T Consensus 166 ~isS~~~~~~------------~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~---~~~~~~~~~ 229 (276)
T 1mxh_A 166 NLCDAMTDLP------------LPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PA---MPQETQEEY 229 (276)
T ss_dssp EECCGGGGSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SS---SCHHHHHHH
T ss_pred EECchhhcCC------------CCCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-cc---CCHHHHHHH
Confidence 9999887642 1345789999999999999998775 899999999999998 21 112233333
Q ss_pred HcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 280 IRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
....+. .+++.+++|+|++++.++...... ..|++|++.+|.
T Consensus 230 ~~~~p~-----------~r~~~~~~dva~~v~~l~s~~~~~----------~tG~~~~vdgG~ 271 (276)
T 1mxh_A 230 RRKVPL-----------GQSEASAAQIADAIAFLVSKDAGY----------ITGTTLKVDGGL 271 (276)
T ss_dssp HTTCTT-----------TSCCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred HhcCCC-----------CCCCCCHHHHHHHHHHHhCccccC----------ccCcEEEECCch
Confidence 322111 123789999999999988754322 344899998874
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=213.45 Aligned_cols=231 Identities=12% Similarity=0.054 Sum_probs=165.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeC-CCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN-FNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
++++|+|+||||+|+||++++++|+++|++|++++| +.+........... ...++.++.+|++|.+++.++++.+
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK---VGGEAIAVKGDVTVESDVINLVQSAI 80 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999 43322222111111 1346889999999999999888754
Q ss_pred ----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||..... ...++.+..+++|+.++.++++++.+ .+..++||++||...+..
T Consensus 81 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~--------- 151 (261)
T 1gee_A 81 KEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIP--------- 151 (261)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC---------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCC---------
Confidence 679999999986432 12234467899999999888777644 331249999999776532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
..+...|+.||++.+.+++.++.++ |+++++||||.|+++........+.....+....+ ..
T Consensus 152 ---~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~ 216 (261)
T 1gee_A 152 ---WPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIP------------MG 216 (261)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCT------------TS
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcCC------------CC
Confidence 1456789999999999999998775 89999999999999843210000111222222111 12
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
.+++++|+|++++.++...... ..|+++++.+|..
T Consensus 217 ~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~~ 251 (261)
T 1gee_A 217 YIGEPEEIAAVAAWLASSEASY----------VTGITLFADGGMT 251 (261)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHhCccccC----------CCCcEEEEcCCcc
Confidence 4789999999999988754321 3348999998754
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-26 Score=213.03 Aligned_cols=233 Identities=13% Similarity=0.068 Sum_probs=172.8
Q ss_pred CCCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 75 RSTRGLTVLVTGAAG--FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 75 ~~~~~~~vlItGg~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
..+++|++|||||+| +||+++++.|+++|++|++++|+.+..+. ...... ....+.++.+|++|.++++++++.
T Consensus 26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~-~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKR-VDPLAE---SLGVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHHHH---HHTCCEEEECCTTCHHHHHHHHHH
T ss_pred hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHH-HHHHHH---hcCCeEEEEcCCCCHHHHHHHHHH
Confidence 457899999999997 99999999999999999999997543222 111111 123578999999999999999886
Q ss_pred c-----CccEEEEcccccCc--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCC
Q 042406 153 V-----AFTHVMHLAAQAGV--------RYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~ 218 (424)
+ ++|+||||||+... ....++.+..+++|+.|+.++++++..... ..+||++||.+.+..
T Consensus 102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~------ 175 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKV------ 175 (296)
T ss_dssp HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSC------
T ss_pred HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccC------
Confidence 5 78999999998653 122334467999999999999999876532 248999999877642
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
......|++||++.+.+++.++.++ |+++++|+||.|.++..............+....++
T Consensus 176 ------~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~---------- 239 (296)
T 3k31_A 176 ------VPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPL---------- 239 (296)
T ss_dssp ------CTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHSTT----------
T ss_pred ------CCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcCCC----------
Confidence 1445789999999999999998875 899999999999998543221112222333222221
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
..+...+|+|++++.++...... ..|+++++.+|..+.
T Consensus 240 --~r~~~pedvA~~v~fL~s~~a~~----------itG~~i~vdGG~~~~ 277 (296)
T 3k31_A 240 --RRNTTLDDVGGAALYLLSDLGRG----------TTGETVHVDCGYHVV 277 (296)
T ss_dssp --SSCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGC
T ss_pred --CCCCCHHHHHHHHHHHcCCccCC----------ccCCEEEECCCcccc
Confidence 12677899999999998765432 445899999886543
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=215.03 Aligned_cols=226 Identities=13% Similarity=0.050 Sum_probs=163.8
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+.++++|++|||||+|+||++++++|+++|++|++++|+.+....... . ...++.++.+|++|.++++++++.+
T Consensus 22 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~-----~-~~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (266)
T 3grp_A 22 MFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAA-----D-LGKDVFVFSANLSDRKSIKQLAEVA 95 (266)
T ss_dssp TTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-----H-HCSSEEEEECCTTSHHHHHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----H-hCCceEEEEeecCCHHHHHHHHHHH
Confidence 456789999999999999999999999999999999996543322211 1 1357899999999999999988854
Q ss_pred -----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||..... ...++.+..+++|+.|+.++.+++ ++.+.+ +||++||...+...
T Consensus 96 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~Iv~isS~~~~~~~------- 167 (266)
T 3grp_A 96 EREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYG-RIINITSIVGVVGN------- 167 (266)
T ss_dssp HHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCC-------------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-EEEEECCHHHcCCC-------
Confidence 679999999986532 223345678999999976665554 445544 99999997665321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.+...|+.||++.+.+++.++.++ |+++++|+||.|.++.... ........+....+ .
T Consensus 168 -----~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~--~~~~~~~~~~~~~p------------~ 228 (266)
T 3grp_A 168 -----PGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDK--LNEKQKEAIMAMIP------------M 228 (266)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHT--CCHHHHHHHHTTCT------------T
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhc--cCHHHHHHHHhcCC------------C
Confidence 345789999999999999998774 8999999999998863221 11123333333322 2
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 229 ~r~~~~edvA~~v~~L~s~~~~~----------itG~~i~vdGG~ 263 (266)
T 3grp_A 229 KRMGIGEEIAFATVYLASDEAAY----------LTGQTLHINGGM 263 (266)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred CCCcCHHHHHHHHHHHhCccccC----------ccCCEEEECCCe
Confidence 23778999999999988765432 345899998874
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-27 Score=222.63 Aligned_cols=230 Identities=18% Similarity=0.210 Sum_probs=170.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|+||||+|+||++++++|+++|++|++++|+.+........ +...+++++.+|++|.+++.++++++ |+||
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~-----l~~~~v~~v~~Dl~d~~~l~~a~~~~--d~vi 84 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDE-----FQSLGAIIVKGELDEHEKLVELMKKV--DVVI 84 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHH-----HHHTTCEEEECCTTCHHHHHHHHTTC--SEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHH-----hhcCCCEEEEecCCCHHHHHHHHcCC--CEEE
Confidence 5899999999999999999999999999999976421111111 12357899999999999999999976 9999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCC-CChHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTDQP-ASLYAATKKA 237 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~-~~~Y~~sK~~ 237 (424)
|+|+... +.++.+++++|++.+ ++ +||+ | +||... ++..+. .| ...| .+|.+
T Consensus 85 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~sK~~ 138 (318)
T 2r6j_A 85 SALAFPQ---------------ILDQFKILEAIKVAGNIK-RFLP-S---DFGVEE----DRINAL-PPFEALI-ERKRM 138 (318)
T ss_dssp ECCCGGG---------------STTHHHHHHHHHHHCCCC-EEEC-S---CCSSCT----TTCCCC-HHHHHHH-HHHHH
T ss_pred ECCchhh---------------hHHHHHHHHHHHhcCCCC-EEEe-e---ccccCc----ccccCC-CCcchhH-HHHHH
Confidence 9998632 346789999999988 75 8874 4 355321 121211 22 3568 99999
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 238 ~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
+|.++++ .+++++++||+.+++. +.+.+......+..+.++ ++++..++++|++|+|++++.++..+
T Consensus 139 ~e~~~~~----~~~~~~~lr~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~~~l~~~ 205 (318)
T 2r6j_A 139 IRRAIEE----ANIPYTYVSANCFASY------FINYLLRPYDPKDEITVY---GTGEAKFAMNYEQDIGLYTIKVATDP 205 (318)
T ss_dssp HHHHHHH----TTCCBEEEECCEEHHH------HHHHHHCTTCCCSEEEEE---TTSCCEEEEECHHHHHHHHHHHTTCG
T ss_pred HHHHHHh----cCCCeEEEEcceehhh------hhhhhccccCCCCceEEe---cCCCceeeEeeHHHHHHHHHHHhcCc
Confidence 9988764 4899999999988764 122222222234445554 56788999999999999999999875
Q ss_pred cccCCCCCCCCCCCCcceEEcCC-CCcccHHHHHHHHHHHhCccccccccc
Q 042406 318 KKSTGSGGKKKGPAEFRIFNLGN-TTPVPVSRLVSLLEKILKVKAETKVLP 367 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~s~~el~~~i~~~~g~~~~~~~~~ 367 (424)
.. .+++|++.+ ++.+|+.|+++.+.+.+|.+.++...+
T Consensus 206 ~~------------~~~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (318)
T 2r6j_A 206 RA------------LNRVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP 244 (318)
T ss_dssp GG------------TTEEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEEC
T ss_pred cc------------cCeEEEecCCCCccCHHHHHHHHHHHhCCCCceeecC
Confidence 42 127788875 578999999999999999887655443
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=215.84 Aligned_cols=231 Identities=15% Similarity=0.065 Sum_probs=167.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|++|||||+|+||++++++|+++|++|++++|... ......... ....++.++.+|++|.++++++.+..
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~-~~~~~~~~~---~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (273)
T 3uf0_A 27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG-VKEVADEIA---DGGGSAEAVVADLADLEGAANVAEELA 102 (273)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTH-HHHHHHHHH---TTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHH-HHHHHHHHH---hcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999997532 222211111 12357899999999999998875533
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+..
T Consensus 103 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~IV~isS~~~~~~---------- 171 (273)
T 3uf0_A 103 ATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSG-RIVTIASMLSFQG---------- 171 (273)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSC----------
T ss_pred hcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcchHhcCC----------
Confidence 6799999999865422 22334679999999999988876 344544 8999999877642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|++||++.+.+++.++.+ .|+++++|+||.|+++..............+....+ ...
T Consensus 172 --~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------~~r 237 (273)
T 3uf0_A 172 --GRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITARIP------------AGR 237 (273)
T ss_dssp --CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHST------------TSS
T ss_pred --CCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcCC------------CCC
Confidence 144578999999999999999987 489999999999998743210000112222222221 123
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
+.+++|+|++++.++...... ..|+++++.+|...
T Consensus 238 ~~~pedva~~v~~L~s~~a~~----------itG~~i~vdGG~~~ 272 (273)
T 3uf0_A 238 WATPEDMVGPAVFLASDAASY----------VHGQVLAVDGGWLA 272 (273)
T ss_dssp CBCGGGGHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred CCCHHHHHHHHHHHhCchhcC----------CcCCEEEECcCccC
Confidence 778999999999988765432 44589999988644
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=210.78 Aligned_cols=224 Identities=14% Similarity=0.071 Sum_probs=162.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+++||||+|+||++++++|+++|++|++++|+.+..... ..+ . ..++.++.+|++|.++++++++.+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~----~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT----ARE-L-GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----HHT-T-GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHH-h-CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999965332221 111 1 246889999999999999888754
Q ss_pred --CccEEEEcccccCch----hhccChHHHHHHHHHHHHH----HHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVN----LLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~----ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||..... ...++.+..+++|+.|+.+ +++.+++.+.+ +||++||...+...
T Consensus 77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~---------- 145 (254)
T 1hdc_A 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGG-SIVNISSAAGLMGL---------- 145 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEECchhhccCC----------
Confidence 679999999976432 1223446789999999874 45556665544 99999998776421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.+...|++||.+.+.+++.++.++ |+++++||||.|+++. .... .......+ ........+
T Consensus 146 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~----------~~~~-~~~~~~~~---~~~~p~~~~ 209 (254)
T 1hdc_A 146 --ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM----------TAET-GIRQGEGN---YPNTPMGRV 209 (254)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH----------HHHH-TCCCSTTS---CTTSTTSSC
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCcc----------cccc-chhHHHHH---HhcCCCCCC
Confidence 345789999999999999998774 8999999999999872 1111 11000000 011111236
Q ss_pred c-cHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 301 T-YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 301 i-~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
. +++|+|++++.++...... ..|+++++.+|..
T Consensus 210 ~~~~~dvA~~v~~l~s~~~~~----------~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 210 GNEPGEIAGAVVKLLSDTSSY----------VTGAELAVDGGWT 243 (254)
T ss_dssp B-CHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred CCCHHHHHHHHHHHhCchhcC----------CCCCEEEECCCcc
Confidence 7 9999999999988765322 3448999988753
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=209.54 Aligned_cols=225 Identities=11% Similarity=0.052 Sum_probs=168.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|+++||||+|+||++++++|+++|++|++++|+.+..+...... ...+.++.+|++|.++++++++.+
T Consensus 5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~~~~ 78 (248)
T 3op4_A 5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL------GDNGKGMALNVTNPESIEAVLKAIT 78 (248)
T ss_dssp TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH------GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------cccceEEEEeCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999754433222211 235788999999999999998865
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||+..... ..++.+..+++|+.|+.++++++.. .+.+ +||++||...+..
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~~~~~--------- 148 (248)
T 3op4_A 79 DEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQG-RIINVGSVVGTMG--------- 148 (248)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHHC---------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEEcchhhcCC---------
Confidence 6899999999865422 2334467999999999998887643 4443 8999999766532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++..... ............+ ..
T Consensus 149 ---~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~p------------~~ 211 (248)
T 3op4_A 149 ---NAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKAL--NDEQRTATLAQVP------------AG 211 (248)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTS--CHHHHHHHHHTCT------------TC
T ss_pred ---CCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhc--CHHHHHHHHhcCC------------CC
Confidence 1456789999999999999998774 89999999999998754321 1122222222221 12
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 212 r~~~p~dva~~v~~L~s~~~~~----------itG~~i~vdgG~ 245 (248)
T 3op4_A 212 RLGDPREIASAVAFLASPEAAY----------ITGETLHVNGGM 245 (248)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred CCcCHHHHHHHHHHHcCCccCC----------ccCcEEEECCCe
Confidence 3788999999999888765432 345899998875
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=211.92 Aligned_cols=222 Identities=11% Similarity=0.018 Sum_probs=166.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
....++|+||||||+|+||++++++|+++|++|++++|+.+.. ...+.++++|++|.++++++++.+
T Consensus 9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~ 75 (269)
T 3vtz_A 9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD-------------VNVSDHFKIDVTNEEEVKEAVEKT 75 (269)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C-------------TTSSEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc-------------cCceeEEEecCCCHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999965421 125678999999999999988865
Q ss_pred -----CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||....... .++.+..+++|+.|+.++++++.. .+.+ +||++||...+...
T Consensus 76 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~------- 147 (269)
T 3vtz_A 76 TKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHG-SIINIASVQSYAAT------- 147 (269)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSBC-------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEECchhhccCC-------
Confidence 78999999998654322 223356899999999888887643 4443 99999998887531
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCC---------CCcHHHHHHHHHcCCceeEEe
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRP---------DMAYFFFTRDIIRGKRITVYE 289 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 289 (424)
.+...|++||++.+.+++.++.++ ++++++|+||.|.++.... ..........+....
T Consensus 148 -----~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 216 (269)
T 3vtz_A 148 -----KNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQH------ 216 (269)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHS------
T ss_pred -----CCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcC------
Confidence 345789999999999999999887 8999999999999863110 000111122222111
Q ss_pred cCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 290 APDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 290 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
....+.+++|+|++++.++...... ..|+++++.+|..
T Consensus 217 ------p~~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~ 254 (269)
T 3vtz_A 217 ------PMGRIGRPEEVAEVVAFLASDRSSF----------ITGACLTVDGGLL 254 (269)
T ss_dssp ------TTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred ------CCCCCcCHHHHHHHHHHHhCCccCC----------CcCcEEEECCCcc
Confidence 1234788999999999988765432 4458999998753
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-27 Score=219.94 Aligned_cols=233 Identities=12% Similarity=0.048 Sum_probs=171.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|++|||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~ 98 (271)
T 4ibo_A 22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRN---VGHDAEAVAFDVTSESEIIEAFARLD 98 (271)
T ss_dssp GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH---TTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999976544443333221 2357899999999999999998865
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||+..... ..++.+..+++|+.|+.++++++.. .+.+ +||++||...+..
T Consensus 99 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iV~isS~~~~~~--------- 168 (271)
T 4ibo_A 99 EQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYG-KIVNIGSLTSELA--------- 168 (271)
T ss_dssp HHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSB---------
T ss_pred HHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEccHHhCCC---------
Confidence 6899999999864322 2334467899999999988776543 3443 8999999766532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++........+.+...+....+. .
T Consensus 169 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------~ 233 (271)
T 4ibo_A 169 ---RATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPA------------K 233 (271)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHSTT------------C
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcCCC------------C
Confidence 1456789999999999999998774 899999999999987432100001122222222221 2
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
.+.+++|+|.+++.++...... ..|+++++.+|...+
T Consensus 234 r~~~pedva~~v~~L~s~~~~~----------itG~~i~vdGG~~~~ 270 (271)
T 4ibo_A 234 RWGKPQELVGTAVFLSASASDY----------VNGQIIYVDGGMLSV 270 (271)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTT----------CCSCEEEESTTGGGB
T ss_pred CCcCHHHHHHHHHHHhCccccC----------CCCcEEEECCCeecc
Confidence 3677899999999888765432 445899999886543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-26 Score=211.62 Aligned_cols=228 Identities=11% Similarity=0.048 Sum_probs=164.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|++|.++++++++.+
T Consensus 4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (248)
T 2pnf_A 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIAN--KYGVKAHGVEMNLLSEESINKAFEEIYN 81 (248)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH--HHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh--hcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999965433222211111 02357899999999999999998754
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++ ++.+.+ +||++||...+...
T Consensus 82 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~--------- 151 (248)
T 2pnf_A 82 LVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWG-RIVNISSVVGFTGN--------- 151 (248)
T ss_dssp HSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCE-EEEEECCHHHHHCC---------
T ss_pred hcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc-EEEEEccHHhcCCC---------
Confidence 679999999976432 122334678999999997766654 445544 99999997554211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.+...|+.+|.+.+.+++.++.++ +++++++|||.++++.... ....+...+....+ ...
T Consensus 152 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~------------~~~ 214 (248)
T 2pnf_A 152 ---VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAV--LSEEIKQKYKEQIP------------LGR 214 (248)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG--SCHHHHHHHHHTCT------------TSS
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhh--ccHHHHHHHHhcCC------------CCC
Confidence 345789999999999999998764 8999999999999885431 11122222222211 124
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+++++|+|++++.++...... ..|++|++.+|.
T Consensus 215 ~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~ 247 (248)
T 2pnf_A 215 FGSPEEVANVVLFLCSELASY----------ITGEVIHVNGGM 247 (248)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred ccCHHHHHHHHHHHhCchhhc----------CCCcEEEeCCCc
Confidence 889999999999998764321 234899998763
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=211.76 Aligned_cols=228 Identities=15% Similarity=0.086 Sum_probs=164.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|++|||||+|+||++++++|+++|++|++++|+.+.... .... . ..++.++.+|++|.++++++++.+
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~----~~~~-~-~~~~~~~~~D~~d~~~v~~~~~~~~~ 82 (263)
T 3ak4_A 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQA----VVAG-L-ENGGFAVEVDVTKRASVDAAMQKAID 82 (263)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HHHT-C-TTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHH-H-hcCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999996532221 1111 1 126889999999999999988854
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.+ .+...+||++||...+...
T Consensus 83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 153 (263)
T 3ak4_A 83 ALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGA--------- 153 (263)
T ss_dssp HHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCC---------
Confidence 6799999999764321 2233467899999999988887654 3312499999998775421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC---------cHHHHHHHHHcCCceeEEec
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM---------AYFFFTRDIIRGKRITVYEA 290 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 290 (424)
.+...|+.||++.+.+++.++.++ |+++++||||.|+++...... ........+...
T Consensus 154 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 222 (263)
T 3ak4_A 154 ---PLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSL-------- 222 (263)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHT--------
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhc--------
Confidence 345789999999999999998775 899999999999987321000 000111111111
Q ss_pred CCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 291 PDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 291 ~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
.....+++++|+|++++.++...... ..|++|++.+|..
T Consensus 223 ----~p~~~~~~~~dvA~~v~~l~s~~~~~----------~tG~~~~vdgG~~ 261 (263)
T 3ak4_A 223 ----TPLGRIEEPEDVADVVVFLASDAARF----------MTGQGINVTGGVR 261 (263)
T ss_dssp ----CTTCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSSSS
T ss_pred ----CCCCCCcCHHHHHHHHHHHhCccccC----------CCCCEEEECcCEe
Confidence 11234889999999999988765322 3448999998754
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=212.75 Aligned_cols=234 Identities=15% Similarity=0.079 Sum_probs=165.6
Q ss_pred CCCCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh
Q 042406 72 TRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 72 ~~~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
.+...+++|++|||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|++|.++++++++
T Consensus 14 ~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~v~~~~~ 91 (267)
T 1vl8_A 14 KEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTE--KYGVETMAFRCDVSNYEEVKKLLE 91 (267)
T ss_dssp ---CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHH
Confidence 334567899999999999999999999999999999999975443332222111 113568899999999999998887
Q ss_pred cc-----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCc-ccCCCCCCC
Q 042406 152 VV-----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSS-VYGVNKKVP 217 (424)
Q Consensus 152 ~~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~-vyg~~~~~~ 217 (424)
.+ ++|+||||||...... ..++.+..+++|+.|+.++++++. +.+. ++||++||.. .+.
T Consensus 92 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~------ 164 (267)
T 1vl8_A 92 AVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDN-PSIINIGSLTVEEV------ 164 (267)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSS-CEEEEECCGGGTCC------
T ss_pred HHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEECCcchhcc------
Confidence 54 6799999999864321 122345789999999998887763 3444 4999999976 321
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+...|++||++.+.+++.++.++ |+++++|+||.|.++..............+....+
T Consensus 165 ------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p---------- 228 (267)
T 1vl8_A 165 ------TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIP---------- 228 (267)
T ss_dssp ------CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCT----------
T ss_pred ------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccChHHHHHHHhhCC----------
Confidence 11345789999999999999998774 89999999999988742210000111222222211
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+.+.+|+|++++.++...... ..|+++.+.+|.
T Consensus 229 --~~~~~~p~dvA~~v~~l~s~~~~~----------itG~~i~vdGG~ 264 (267)
T 1vl8_A 229 --LGRTGVPEDLKGVAVFLASEEAKY----------VTGQIIFVDGGW 264 (267)
T ss_dssp --TSSCBCGGGGHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred --CCCCcCHHHHHHHHHHHcCccccC----------CcCCeEEECCCC
Confidence 113778999999999988764322 344899998774
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-26 Score=205.50 Aligned_cols=221 Identities=14% Similarity=0.140 Sum_probs=166.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-Cc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-AF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~~ 155 (424)
.+||+++||||+++||+++++.|+++|++|++.+|+.+.... ....++..+++|++|+++++++++.. ++
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~---------~~~~~~~~~~~Dv~~~~~v~~~~~~~g~i 79 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA---------PRHPRIRREELDITDSQRLQRLFEALPRL 79 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS---------CCCTTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh---------hhcCCeEEEEecCCCHHHHHHHHHhcCCC
Confidence 489999999999999999999999999999999997654322 23457899999999999999999887 78
Q ss_pred cEEEEcccccCch--hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 042406 156 THVMHLAAQAGVR--YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPAS 229 (424)
Q Consensus 156 d~vi~~Ag~~~~~--~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~ 229 (424)
|++|||||+.... ...++.+..+++|+.|+..+.+++. +.+ .+||++||...... .....
T Consensus 80 DiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~--G~IVnisS~~~~~~------------~~~~~ 145 (242)
T 4b79_A 80 DVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG--GSILNIASMYSTFG------------SADRP 145 (242)
T ss_dssp SEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--EEEEEECCGGGTSC------------CSSCH
T ss_pred CEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEeeccccCC------------CCCCH
Confidence 9999999986532 1233446799999999887776653 333 38999999765432 13457
Q ss_pred hHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHH
Q 042406 230 LYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDI 306 (424)
Q Consensus 230 ~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 306 (424)
.|++||.+...+.+.++.++ ||++++|.||.|..|.......-....+.+....|+.. +...+|+
T Consensus 146 ~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~PlgR------------~g~peei 213 (242)
T 4b79_A 146 AYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLAR------------WGEAPEV 213 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTTCS------------CBCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCCCC------------CcCHHHH
Confidence 89999999999999999875 89999999999988743321111234444555444322 5568999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 307 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
|.+++.++...... ..|+++.|.+|-
T Consensus 214 A~~v~fLaSd~a~~----------iTG~~l~VDGG~ 239 (242)
T 4b79_A 214 ASAAAFLCGPGASF----------VTGAVLAVDGGY 239 (242)
T ss_dssp HHHHHHHTSGGGTT----------CCSCEEEESTTG
T ss_pred HHHHHHHhCchhcC----------ccCceEEECccH
Confidence 99999888665433 455899998763
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=212.52 Aligned_cols=229 Identities=13% Similarity=0.113 Sum_probs=168.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCC-CCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF-NNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
++++|+|+||||+|+||++++++|+++|++|++++|+ .+........... ...++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRA---DGGDAAFFAADLATSEACQQLVDEFV 80 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999998 5443332222221 1346899999999999999988854
Q ss_pred ----CccEEEEcccc-cCch----hhccChHHHHHHHHHHHHHHHHHHHh----cC----CCCeEEEecCCcccCCCCCC
Q 042406 154 ----AFTHVMHLAAQ-AGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SD----PQPAIVWASSSSVYGVNKKV 216 (424)
Q Consensus 154 ----~~d~vi~~Ag~-~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~----~~~~~v~~SS~~vyg~~~~~ 216 (424)
++|+||||||. .... ...++.+..+++|+.|+.++++++.+ .+ ...+||++||...+..
T Consensus 81 ~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~---- 156 (258)
T 3afn_B 81 AKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTG---- 156 (258)
T ss_dssp HHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHC----
T ss_pred HHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccC----
Confidence 67999999997 3221 11223456899999999988886643 11 1148999999876541
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCC
Q 042406 217 PFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 217 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
...+...|+.||++.|.+++.++.++ |+++++||||.++++..... ...+...+..+.+
T Consensus 157 -------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~--------- 218 (258)
T 3afn_B 157 -------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK--TQDVRDRISNGIP--------- 218 (258)
T ss_dssp -------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC--CHHHHHHHHTTCT---------
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc--CHHHHHHHhccCC---------
Confidence 01346789999999999999998775 89999999999999854321 2233344443322
Q ss_pred CccccccccHHHHHHHHHHHhhhccc-cCCCCCCCCCCCCcceEEcCCCC
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKK-STGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+++++|+|++++.++..... . ..|++|++.+|.
T Consensus 219 ---~~~~~~~~dva~~~~~l~~~~~~~~----------~~G~~~~v~gg~ 255 (258)
T 3afn_B 219 ---MGRFGTAEEMAPAFLFFASHLASGY----------ITGQVLDINGGQ 255 (258)
T ss_dssp ---TCSCBCGGGTHHHHHHHHCHHHHTT----------CCSEEEEESTTS
T ss_pred ---CCcCCCHHHHHHHHHHHhCcchhcc----------ccCCEEeECCCc
Confidence 23588999999999999876532 1 234899998875
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=212.86 Aligned_cols=241 Identities=15% Similarity=0.124 Sum_probs=168.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc---------hhhhHHHHHh-hhhccCCeEEEEccCCCHH
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY---------YETSLKKARK-GLLERAGVFVIDADINDKS 144 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~---------~~~~~~~~~~-~~~~~~~v~~~~~Dl~d~~ 144 (424)
.++++|++|||||+|+||++++++|+++|++|++++|+.+. .......... .......+.++.+|++|.+
T Consensus 7 ~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 7 GKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred cccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 45789999999999999999999999999999999984221 1111111111 1113467899999999999
Q ss_pred HHHHHhhcc-----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccC
Q 042406 145 LLDKIFNVV-----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 145 ~v~~~~~~~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg 211 (424)
+++++++.+ ++|+||||||...... ..++.+..+++|+.|+.++++++. +.+...+||++||...+.
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~ 166 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK 166 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC
Confidence 999988864 6899999999865422 233446789999999998888753 333234899999987764
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCce-eE
Q 042406 212 VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRI-TV 287 (424)
Q Consensus 212 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~ 287 (424)
.. .....|++||++.+.+++.++.++ |+++++|+||.|.++...... .............. ..
T Consensus 167 ~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~-~~~~~~~~~~~~~~~~~ 233 (277)
T 3tsc_A 167 MQ------------PFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGDM-VTAVGQAMETNPQLSHV 233 (277)
T ss_dssp CC------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHHH-HHHHHHHHHTCGGGTTT
T ss_pred CC------------CCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccchh-hhhhhhcccccHHHHHH
Confidence 21 345789999999999999999875 899999999999987433110 00111111111110 00
Q ss_pred EecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 288 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+ ...... -+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 234 ~---~~~~p~-r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~ 274 (277)
T 3tsc_A 234 L---TPFLPD-WVAEPEDIADTVCWLASDESRK----------VTAAQIPVDQGS 274 (277)
T ss_dssp T---CCSSSC-SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred h---hhccCC-CCCCHHHHHHHHHHHhCccccC----------CcCCEEeeCCCc
Confidence 0 011111 3889999999999998765432 445899998875
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=211.48 Aligned_cols=233 Identities=11% Similarity=0.049 Sum_probs=168.7
Q ss_pred CCCCCCCeEEEEcCCCh--hHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh
Q 042406 74 PRSTRGLTVLVTGAAGF--VGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
+..+++|++|||||+|+ ||+++++.|+++|++|++++|+... .+....... ...++.++.+|++|.++++++++
T Consensus 26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~-~~~~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~ 101 (293)
T 3grk_A 26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDAL-KKRVEPLAE---ELGAFVAGHCDVADAASIDAVFE 101 (293)
T ss_dssp -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHH-HHHHHHHHH---HHTCEEEEECCTTCHHHHHHHHH
T ss_pred cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHH-HHHHHHHHH---hcCCceEEECCCCCHHHHHHHHH
Confidence 44678999999999977 9999999999999999999996321 111111111 12468899999999999999988
Q ss_pred cc-----CccEEEEcccccCc--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCC
Q 042406 152 VV-----AFTHVMHLAAQAGV--------RYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVP 217 (424)
Q Consensus 152 ~~-----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~ 217 (424)
.+ ++|+||||||+... ....++.+..+++|+.++.++++++..... ..+||++||...+...
T Consensus 102 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~---- 177 (293)
T 3grk_A 102 TLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVM---- 177 (293)
T ss_dssp HHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBC----
T ss_pred HHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCC----
Confidence 65 68999999998652 112334467999999999999998876432 2489999998776421
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.....|++||++.+.+++.++.++ |+++++|+||.|.++..............+....+.
T Consensus 178 --------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~--------- 240 (293)
T 3grk_A 178 --------PNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPL--------- 240 (293)
T ss_dssp --------TTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHSTT---------
T ss_pred --------CchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcCCC---------
Confidence 345889999999999999998775 899999999999987543221122233333332221
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
..+...+|+|++++.++...... ..|+++++.+|..+
T Consensus 241 ---~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~~ 277 (293)
T 3grk_A 241 ---RRTVTIDEVGDVGLYFLSDLSRS----------VTGEVHHADSGYHV 277 (293)
T ss_dssp ---SSCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred ---CCCCCHHHHHHHHHHHcCccccC----------CcceEEEECCCccc
Confidence 22677999999999988765432 44589999987643
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-26 Score=214.64 Aligned_cols=237 Identities=16% Similarity=0.068 Sum_probs=168.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+.+++|++|||||+|+||++++++|+++|++|++++|+.+..+........ ...++.++.+|++|.++++++++.+
T Consensus 24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (283)
T 3v8b_A 24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVG---AGGQAIALEADVSDELQMRNAVRDLV 100 (283)
T ss_dssp ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTT---TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999976544333222211 2357899999999999999998865
Q ss_pred ----CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||+... ....++.+..+++|+.|+.++++++ ++.+.+ +||++||...+...
T Consensus 101 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~Iv~isS~~~~~~~------- 172 (283)
T 3v8b_A 101 LKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGG-AIVVVSSINGTRTF------- 172 (283)
T ss_dssp HHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCSBTTTBC-------
T ss_pred HHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-eEEEEcChhhccCC-------
Confidence 78999999998543 1122334678999999999988887 445544 99999997765321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
...+...|++||++.+.+++.++.++ |+++++|+||.|.++.......... .....+.... ......
T Consensus 173 ---~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~----~~~~~~~~~~---~~~~p~ 242 (283)
T 3v8b_A 173 ---TTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHE----EETAIPVEWP---KGQVPI 242 (283)
T ss_dssp ---CSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCH----HHHSCCCBCT---TCSCGG
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccc----hhhhhhhhhh---hhcCcc
Confidence 11346789999999999999999874 7999999999999885432111000 0001111100 011111
Q ss_pred --cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 --RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 --~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+...+|+|++++.++...... ..|+++++.+|.
T Consensus 243 ~~~r~~~pedvA~~v~fL~s~~a~~----------itG~~i~vdGG~ 279 (283)
T 3v8b_A 243 TDGQPGRSEDVAELIRFLVSERARH----------VTGSPVWIDGGQ 279 (283)
T ss_dssp GTTCCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTH
T ss_pred ccCCCCCHHHHHHHHHHHcCccccC----------CcCCEEEECcCc
Confidence 34678999999999988765432 445899998874
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=8.2e-27 Score=220.38 Aligned_cols=247 Identities=13% Similarity=0.060 Sum_probs=173.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+++++|+++||||+|+||+++++.|+++|++|++++|+.+.................++.++.+|++|.++++++++.+
T Consensus 22 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 101 (297)
T 1xhl_A 22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 101 (297)
T ss_dssp -CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 3478899999999999999999999999999999999765443332222111000116899999999999999988754
Q ss_pred ----CccEEEEcccccCchh------hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY------AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~------~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.. .+ ++||++||...+...
T Consensus 102 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS~~~~~~~------ 173 (297)
T 1xhl_A 102 AKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSSIVAGPQA------ 173 (297)
T ss_dssp HHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGSSSC------
T ss_pred HhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcCchhccCC------
Confidence 6799999999754321 2233467999999999988887654 33 499999998776431
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-cH------HHHHHHHHcCCceeEEe
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDM-AY------FFFTRDIIRGKRITVYE 289 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~-~~------~~~~~~~~~~~~~~~~~ 289 (424)
..+...|++||++.+.+++.++.+ .|+++++|+||.|.++...... .. ..+...+.. .
T Consensus 174 -----~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~--~----- 241 (297)
T 1xhl_A 174 -----HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKE--C----- 241 (297)
T ss_dssp -----CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTT--T-----
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHh--c-----
Confidence 023578999999999999999865 4899999999999987321100 00 001111100 0
Q ss_pred cCCCCccccccccHHHHHHHHHHHhhhc-cccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHH
Q 042406 290 APDGASVARDFTYIDDIVKGCLAGLDTA-KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKI 356 (424)
Q Consensus 290 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~ 356 (424)
.....+.+++|+|++++.++... ... ..|+++++.+|..+.+.+....+.+.
T Consensus 242 -----~p~~r~~~pedvA~~v~~l~s~~~~~~----------itG~~i~vdGG~~~~~~~~~~~~~~~ 294 (297)
T 1xhl_A 242 -----IPVGHCGKPEEIANIIVFLADRNLSSY----------IIGQSIVADGGSTLVMGMQTHDLMSV 294 (297)
T ss_dssp -----CTTSSCBCHHHHHHHHHHHHCHHHHTT----------CCSCEEEESTTGGGCCGGGGSCHHHH
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCCcccCC----------ccCcEEEECCCccccccccccchhhh
Confidence 11224789999999999988764 321 34489999998777666655444443
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=210.78 Aligned_cols=230 Identities=13% Similarity=0.088 Sum_probs=169.0
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|++|||||+|+||++++++|+++|++|++++|+.+........ ...++.++++|++|.++++++++.+
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE------IGSKAFGVRVDVSSAKDAESMVEKTT 96 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH------HCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH------hCCceEEEEecCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999965433222211 2357899999999999999988865
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++. +.+. .+||++||...+..
T Consensus 97 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~--------- 166 (277)
T 4dqx_A 97 AKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGG-GSIINTTSYTATSA--------- 166 (277)
T ss_dssp HHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTC-EEEEEECCGGGTSC---------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEECchhhCcC---------
Confidence 6899999999864422 223345789999999988887764 3333 39999999877642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC----CCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP----DMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++.... ..........+...
T Consensus 167 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~------------ 231 (277)
T 4dqx_A 167 ---IADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNAR------------ 231 (277)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTT------------
T ss_pred ---CCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhc------------
Confidence 1445789999999999999998775 8999999999998762100 00011111112221
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
.....+.+++|+|++++.++...... ..|+++++.+|..++
T Consensus 232 ~~~~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~~~ 272 (277)
T 4dqx_A 232 AVMDRMGTAEEIAEAMLFLASDRSRF----------ATGSILTVDGGSSIG 272 (277)
T ss_dssp STTCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSSSSSC
T ss_pred CcccCCcCHHHHHHHHHHHhCCccCC----------CcCCEEEECCchhhh
Confidence 12234778999999999988765432 345899999887554
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=208.92 Aligned_cols=243 Identities=12% Similarity=0.050 Sum_probs=169.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch------------hhhHHHHHhh-hhccCCeEEEEccCC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY------------ETSLKKARKG-LLERAGVFVIDADIN 141 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~------------~~~~~~~~~~-~~~~~~v~~~~~Dl~ 141 (424)
..+++|+++||||+|+||+++++.|+++|++|++++|+.... .+........ .....++.++.+|++
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 86 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR 86 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence 457899999999999999999999999999999999973211 1111111111 112457899999999
Q ss_pred CHHHHHHHhhcc-----CccEEEEcccccCchh-----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCC
Q 042406 142 DKSLLDKIFNVV-----AFTHVMHLAAQAGVRY-----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSS 207 (424)
Q Consensus 142 d~~~v~~~~~~~-----~~d~vi~~Ag~~~~~~-----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~ 207 (424)
|.++++++++.+ ++|+||||||+..... ..++.+..+++|+.|+.++++++... +...+||++||.
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 166 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV 166 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence 999999988754 6899999999854321 23344679999999999988876542 322489999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCc
Q 042406 208 SVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKR 284 (424)
Q Consensus 208 ~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~ 284 (424)
..+.. ......|++||++.+.+++.++.++ |+++++|+||.|.++...... ..........
T Consensus 167 ~~~~~------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~----~~~~~~~~~~ 230 (286)
T 3uve_A 167 GGLKA------------YPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEG----TFKMFRPDLE 230 (286)
T ss_dssp GGTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHH----HHHHHCTTSS
T ss_pred hhccC------------CCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccc----hhhhcccccc
Confidence 77642 1345789999999999999998874 899999999999988543210 0000000000
Q ss_pred eeEE------ecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 285 ITVY------EAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 285 ~~~~------~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
.... ........ ..+.+.+|+|++++.++...... ..|+++++.+|..+
T Consensus 231 ~~~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~~a~~----------itG~~i~vdGG~~l 285 (286)
T 3uve_A 231 NPGPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASDEARY----------ITGVTLPIDAGSCL 285 (286)
T ss_dssp SCCHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred ccchhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCccccC----------CcCCEEeECCcccc
Confidence 0000 00000111 35789999999999988765432 45589999987643
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-26 Score=207.28 Aligned_cols=230 Identities=12% Similarity=0.051 Sum_probs=168.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||+++||||+++||+++++.|+++|++|++.+|+.+..++...+.+. ...++.++++|++|+++++++++.+
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~---~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRG---MGKEVLGVKADVSKKKDVEEFVRRTFE 80 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999987655554443332 2467899999999999999988766
Q ss_pred ---CccEEEEcccccCc-h----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-R----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-~----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|++|||||+... . ...++.+..+++|+.|+.++.+++ ++.+.+ +||++||...+...
T Consensus 81 ~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G-~IVnisS~~g~~~~-------- 151 (254)
T 4fn4_A 81 TYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKG-VIVNTASIAGIRGG-------- 151 (254)
T ss_dssp HHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTCSS--------
T ss_pred HcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEechhhcCCC--------
Confidence 78999999997542 1 223345679999999987776654 444544 99999997664321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCc-HHHHHHHHHcCCceeEEecCCCCccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMA-YFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.....|++||.+...+.+.++.++ ||++++|.||.|-.|....... .....+......+ ++ +
T Consensus 152 ----~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~-~~------~--- 217 (254)
T 4fn4_A 152 ----FAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMS-LS------S--- 217 (254)
T ss_dssp ----SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHT-TC------C---
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCC-CC------C---
Confidence 345789999999999999999875 8999999999998774322111 1111111111110 00 0
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
-+...+|+|.+++.++...... ..|+++.|.+|-
T Consensus 218 -R~g~pediA~~v~fLaSd~a~~----------iTG~~i~VDGG~ 251 (254)
T 4fn4_A 218 -RLAEPEDIANVIVFLASDEASF----------VNGDAVVVDGGL 251 (254)
T ss_dssp -CCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred -CCcCHHHHHHHHHHHhCchhcC----------CcCCEEEeCCCc
Confidence 1456899999999888765533 455899998764
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-26 Score=221.79 Aligned_cols=245 Identities=12% Similarity=0.083 Sum_probs=178.9
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCC----------CCchhhhHHHHHhhhhccCCeEEEEccCCCH
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF----------NNYYETSLKKARKGLLERAGVFVIDADINDK 143 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~----------~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~ 143 (424)
+..+++|++|||||+|+||+++++.|+++|++|++++|+ .+........... ...++.++.+|++|.
T Consensus 22 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~d~ 98 (322)
T 3qlj_A 22 MGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITA---AGGEAVADGSNVADW 98 (322)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHH---TTCEEEEECCCTTSH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHh---cCCcEEEEECCCCCH
Confidence 456789999999999999999999999999999999987 2222222222211 235688999999999
Q ss_pred HHHHHHhhcc-----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCC---------CCeEEEec
Q 042406 144 SLLDKIFNVV-----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDP---------QPAIVWAS 205 (424)
Q Consensus 144 ~~v~~~~~~~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~---------~~~~v~~S 205 (424)
++++++++.+ ++|+||||||...... ..++.+..+++|+.|+.++++++..... ..+||++|
T Consensus 99 ~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~is 178 (322)
T 3qlj_A 99 DQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTS 178 (322)
T ss_dssp HHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEc
Confidence 9999988865 6899999999865321 2334467999999999999887743211 13899999
Q ss_pred CCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcC
Q 042406 206 SSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRG 282 (424)
Q Consensus 206 S~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~ 282 (424)
|...+... .+...|++||++.+.+++.++.+ .|+++++|+|| +..+...... . ....
T Consensus 179 S~~~~~~~------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~-~-~~~~----- 238 (322)
T 3qlj_A 179 SGAGLQGS------------VGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVF-A-EMMA----- 238 (322)
T ss_dssp CHHHHHCB------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSC-C-C--------
T ss_pred CHHHccCC------------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhh-h-hhhh-----
Confidence 97665321 34578999999999999999987 48999999999 7665332110 0 0000
Q ss_pred CceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc-----------------c
Q 042406 283 KRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV-----------------P 345 (424)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----------------s 345 (424)
.......++.++|+|.+++.++...... ..|++|++.+|... +
T Consensus 239 ----------~~~~~~~~~~pedva~~v~~L~s~~~~~----------itG~~i~vdGG~~~~~~~~~~~~~~~~~~~~~ 298 (322)
T 3qlj_A 239 ----------TQDQDFDAMAPENVSPLVVWLGSAEARD----------VTGKVFEVEGGKIRVAEGWAHGPQIDKGARWD 298 (322)
T ss_dssp ---------------CCTTCGGGTHHHHHHHTSGGGGG----------CCSCEEEEETTEEEEEECCEEEEEEECSSCCC
T ss_pred ----------ccccccCCCCHHHHHHHHHHHhCccccC----------CCCCEEEECCCccccCCCcccccccCccCCCC
Confidence 1112234678999999999988665432 34489999887654 7
Q ss_pred HHHHHHHHHHHhCccc
Q 042406 346 VSRLVSLLEKILKVKA 361 (424)
Q Consensus 346 ~~el~~~i~~~~g~~~ 361 (424)
+.|+++.+.+.++.+.
T Consensus 299 ~~el~~~~~~~~~~~~ 314 (322)
T 3qlj_A 299 PAELGPVVADLLGKAR 314 (322)
T ss_dssp GGGHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhccC
Confidence 7999999999998653
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=218.50 Aligned_cols=234 Identities=11% Similarity=0.047 Sum_probs=170.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchh-hhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYE-TSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.++++|++|||||+|+||++++++|+++|++|++++|+.+... ....... . ....++.++.+|++|.++++++++.+
T Consensus 45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~Dv~d~~~v~~~~~~~ 122 (294)
T 3r3s_A 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALI-E-ECGRKAVLLPGDLSDESFARSLVHKA 122 (294)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHH-H-HTTCCEEECCCCTTSHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHH-H-HcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 3568999999999999999999999999999999998633211 1111111 1 12457899999999999999888754
Q ss_pred -----CccEEEEcccccCc-h----hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGV-R----YAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~-~----~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||.... . ...++.+..+++|+.|+.++++++..... ..+||++||...+...
T Consensus 123 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~--------- 193 (294)
T 3r3s_A 123 REALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPS--------- 193 (294)
T ss_dssp HHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCC---------
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCC---------
Confidence 68999999997542 1 12334467999999999999999877542 2389999998887631
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.+...|+.||++.+.+++.++.++ |+++++|+||.|+++..............+ ........
T Consensus 194 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~------------~~~~p~~r 258 (294)
T 3r3s_A 194 ---PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQF------------GQQTPMKR 258 (294)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGGGSTTT------------TTTSTTSS
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHHHHHHH------------HhcCCCCC
Confidence 345789999999999999999876 899999999999986311000000000000 11222334
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
+..++|+|++++.++...... ..|+++++.+|..+
T Consensus 259 ~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~~l 293 (294)
T 3r3s_A 259 AGQPAELAPVYVYLASQESSY----------VTAEVHGVCGGEHL 293 (294)
T ss_dssp CBCGGGGHHHHHHHHSGGGTT----------CCSCEEEESTTCCC
T ss_pred CcCHHHHHHHHHHHhCccccC----------CCCCEEEECCCccC
Confidence 778999999999988765432 44589999988654
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=209.93 Aligned_cols=234 Identities=13% Similarity=0.080 Sum_probs=169.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+.++++|++|||||+|+||++++++|+++|++|++++++............. ....++.++.+|++|.++++++++.+
T Consensus 13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~ 90 (270)
T 3is3_A 13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIK--ALGSDAIAIKADIRQVPEIVKLFDQA 90 (270)
T ss_dssp TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH--HTTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999999999999988765332221111111 12467899999999999999998865
Q ss_pred -----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++..... ..+||++||......
T Consensus 91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 159 (270)
T 3is3_A 91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDF----------- 159 (270)
T ss_dssp HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTC-----------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccC-----------
Confidence 7899999999865422 2334467899999999999998876542 238999999763211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC----------CCcHHHHHHHHHcCCceeEEec
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP----------DMAYFFFTRDIIRGKRITVYEA 290 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 290 (424)
...+...|++||++.+.+++.++.++ |+++++|+||.|.++.... ..........+....+
T Consensus 160 ~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------ 233 (270)
T 3is3_A 160 SVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASP------ 233 (270)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHST------
T ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCC------
Confidence 11456789999999999999999874 8999999999999874210 0011112222222111
Q ss_pred CCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 291 PDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 291 ~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 234 ------~~r~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~ 269 (270)
T 3is3_A 234 ------LHRNGWPQDVANVVGFLVSKEGEW----------VNGKVLTLDGGA 269 (270)
T ss_dssp ------TCSCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTC
T ss_pred ------CCCCCCHHHHHHHHHHHcCCccCC----------ccCcEEEeCCCC
Confidence 123678999999999988765432 445899998874
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=208.58 Aligned_cols=226 Identities=13% Similarity=0.099 Sum_probs=162.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeC-CCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN-FNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r-~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++|+++||||+|+||++++++|+++|++|++++| +.+........... ...++.++.+|++|.++++++++.+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKK---LGSDAIAVRADVANAEDVTNMVKQTVD 78 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999 43332222221111 1356889999999999999988854
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++ ++.+.+ +||++||...+...
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 148 (246)
T 2uvd_A 79 VFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHG-RIVNIASVVGVTGN--------- 148 (246)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECCHHhcCCC---------
Confidence 679999999986432 122334679999999977666554 444544 99999997664321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.+...|++||.+.+.+++.++.++ |+++++|+||.|.++...... ......+....+ ...
T Consensus 149 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~p------------~~~ 211 (246)
T 2uvd_A 149 ---PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLD--ENIKAEMLKLIP------------AAQ 211 (246)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCC--TTHHHHHHHTCT------------TCS
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcC--HHHHHHHHhcCC------------CCC
Confidence 345789999999999999988764 899999999999987533210 111122222211 123
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+++++|+|++++.++...... ..|+++++.+|.
T Consensus 212 ~~~~~dvA~~~~~l~s~~~~~----------~tG~~~~vdgG~ 244 (246)
T 2uvd_A 212 FGEAQDIANAVTFFASDQSKY----------ITGQTLNVDGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred CcCHHHHHHHHHHHcCchhcC----------CCCCEEEECcCc
Confidence 789999999999988654322 344899998874
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-26 Score=212.29 Aligned_cols=237 Identities=14% Similarity=0.083 Sum_probs=170.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+|+||||+|+||++++++|+++|++|++++|+.+............ ...++.++.+|++|.++++++++++
T Consensus 11 ~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 88 (265)
T 1h5q_A 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE--FGVKTKAYQCDVSNTDIVTKTIQQIDA 88 (265)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH--HTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHh--cCCeeEEEEeeCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999765443332222211 2357899999999999999888764
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.++.++++++.+. +..++||++||...+..... ...
T Consensus 89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----~~~ 164 (265)
T 1h5q_A 89 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS----SLN 164 (265)
T ss_dssp HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE----ETT
T ss_pred hcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc----ccc
Confidence 4799999999864321 22334678999999999998887543 32248999999877543210 001
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
...+...|+.||++.+.+++.++.++ |+++++||||.|+++..... ...+...+....+ ...
T Consensus 165 -~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~------------~~~ 229 (265)
T 1h5q_A 165 -GSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM--DKKIRDHQASNIP------------LNR 229 (265)
T ss_dssp -EECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS--CHHHHHHHHHTCT------------TSS
T ss_pred -ccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc--chhHHHHHHhcCc------------ccC
Confidence 11346789999999999999998774 89999999999998854321 1122222222211 123
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
+++++|+|++++.++...... ..|++|++.+|..
T Consensus 230 ~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~~ 263 (265)
T 1h5q_A 230 FAQPEEMTGQAILLLSDHATY----------MTGGEYFIDGGQL 263 (265)
T ss_dssp CBCGGGGHHHHHHHHSGGGTT----------CCSCEEEECTTGG
T ss_pred CCCHHHHHHHHHhhccCchhc----------CcCcEEEecCCEe
Confidence 788999999999998765322 3448999998753
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=208.32 Aligned_cols=220 Identities=15% Similarity=0.086 Sum_probs=162.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+........ . ...+.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-----~-~~~~~~~~~D~~~~~~v~~~~~~~~~ 77 (260)
T 1nff_A 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAE-----L-ADAARYVHLDVTQPAQWKAAVDTAVT 77 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----T-GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-----h-hcCceEEEecCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999965432221111 1 124889999999999999988854
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||..... ...++.+..+++|+.|+.+++++ +++.+.+ +||++||...+...
T Consensus 78 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 147 (260)
T 1nff_A 78 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRG-SIINISSIEGLAGT--------- 147 (260)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEeehhhcCCC---------
Confidence 679999999986432 12234467999999998665554 4555544 99999998876421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.+...|+.||.+.+.+++.++.+ .|+++++||||.|+++..... ...+. ......
T Consensus 148 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~------------~~~~~-------~~~~~~ 205 (260)
T 1nff_A 148 ---VACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV------------PEDIF-------QTALGR 205 (260)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS------------CTTCS-------CCSSSS
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccccc------------hhhHH-------hCccCC
Confidence 34578999999999999999877 489999999999999843200 00000 011224
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
+.+++|+|++++.++...... ..|++|++.+|..
T Consensus 206 ~~~~~dvA~~v~~l~s~~~~~----------~~G~~~~v~gG~~ 239 (260)
T 1nff_A 206 AAEPVEVSNLVVYLASDESSY----------STGAEFVVDGGTV 239 (260)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred CCCHHHHHHHHHHHhCccccC----------CcCCEEEECCCee
Confidence 789999999999988764322 3348999998754
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=209.18 Aligned_cols=226 Identities=14% Similarity=0.112 Sum_probs=165.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+++++|+|+||||+|+||++++++|+++|++|++++|+.+......... ..++.++.+|++|.++++++++.+
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL------GNNCVFAPADVTSEKDVQTALALAK 81 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH------CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh------CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999999876543322211 357899999999999999998854
Q ss_pred ----CccEEEEcccccCch----------hhccChHHHHHHHHHHHHHHHHHHHhc----------CCCCeEEEecCCcc
Q 042406 154 ----AFTHVMHLAAQAGVR----------YAMQNPNSYVESNIAGFVNLLETCKSS----------DPQPAIVWASSSSV 209 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~----------~~~~~~~~~~~~N~~g~~~ll~a~~~~----------~~~~~~v~~SS~~v 209 (424)
++|+||||||..... ...++.+..+++|+.++.++++++.+. +. .+||++||...
T Consensus 82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~ 160 (265)
T 2o23_A 82 GKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQR-GVIINTASVAA 160 (265)
T ss_dssp HHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCC-EEEEEECCTHH
T ss_pred HHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCC-cEEEEeCChhh
Confidence 679999999986432 122334678999999999999887654 33 38999999877
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCcee
Q 042406 210 YGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRIT 286 (424)
Q Consensus 210 yg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 286 (424)
+... .+...|+.||++.+.+++.++.++ |+++++|+||.|.++.... ........+....+.
T Consensus 161 ~~~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~~- 225 (265)
T 2o23_A 161 FEGQ------------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS--LPEKVCNFLASQVPF- 225 (265)
T ss_dssp HHCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC------------CHHHHTCSS-
T ss_pred cCCC------------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCccccc--cCHHHHHHHHHcCCC-
Confidence 6421 345789999999999999998764 8999999999998874321 000011111111110
Q ss_pred EEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 287 VYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 287 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
...+++++|+|++++.+++... ..|+++++.+|..+
T Consensus 226 ----------~~~~~~~~dva~~~~~l~~~~~------------~~G~~i~vdgG~~~ 261 (265)
T 2o23_A 226 ----------PSRLGDPAEYAHLVQAIIENPF------------LNGEVIRLDGAIRM 261 (265)
T ss_dssp ----------SCSCBCHHHHHHHHHHHHHCTT------------CCSCEEEESTTCCC
T ss_pred ----------cCCCCCHHHHHHHHHHHhhcCc------------cCceEEEECCCEec
Confidence 0237899999999999886432 34489999887544
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=6e-26 Score=212.68 Aligned_cols=232 Identities=15% Similarity=0.051 Sum_probs=157.3
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc-hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY-YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
+..+++|++|||||+|+||+++++.|+++|++|++++|.... ......... ....++.++++|++|.++++++++.
T Consensus 24 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dv~d~~~v~~~~~~ 100 (280)
T 4da9_A 24 MTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELS---GLGARVIFLRADLADLSSHQATVDA 100 (280)
T ss_dssp CSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH---HTTCCEEEEECCTTSGGGHHHHHHH
T ss_pred hhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHH---hcCCcEEEEEecCCCHHHHHHHHHH
Confidence 445788999999999999999999999999999999974432 222212111 1245799999999999999998886
Q ss_pred c-----CccEEEEcccccCc------hhhccChHHHHHHHHHHHHHHHHHHHhc----CC--CCeEEEecCCcccCCCCC
Q 042406 153 V-----AFTHVMHLAAQAGV------RYAMQNPNSYVESNIAGFVNLLETCKSS----DP--QPAIVWASSSSVYGVNKK 215 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~ll~a~~~~----~~--~~~~v~~SS~~vyg~~~~ 215 (424)
+ ++|+||||||.... ....++.+..+++|+.|+.++++++... +. ..+||++||...+..
T Consensus 101 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~--- 177 (280)
T 4da9_A 101 VVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMT--- 177 (280)
T ss_dssp HHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC--------
T ss_pred HHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccC---
Confidence 5 68999999998321 1123344678999999998887776443 21 238999999776532
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCC
Q 042406 216 VPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 216 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
..+...|++||++.+.+++.++.+ .|+++++|+||.|.++..... .......+.. .
T Consensus 178 ---------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~-~--------- 236 (280)
T 4da9_A 178 ---------SPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAV--SGKYDGLIES-G--------- 236 (280)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-----------------------------
T ss_pred ---------CCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhc--chhHHHHHhh-c---------
Confidence 134578999999999999999987 489999999999998743210 0011111110 0
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
......+.+++|+|++++.++...... ..|+++++.+|..
T Consensus 237 -~~p~~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~ 276 (280)
T 4da9_A 237 -LVPMRRWGEPEDIGNIVAGLAGGQFGF----------ATGSVIQADGGLS 276 (280)
T ss_dssp ------CCBCHHHHHHHHHHHHTSTTGG----------GTTCEEEESTTCC
T ss_pred -CCCcCCcCCHHHHHHHHHHHhCccccC----------CCCCEEEECCCcc
Confidence 111234788999999999988765432 3458999998754
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=210.32 Aligned_cols=231 Identities=13% Similarity=0.062 Sum_probs=171.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|++|||||+|+||++++++|+++|++|++++|+.+..+........ ...++.++++|++|.++++++++.+
T Consensus 28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~v~~~~~~~~ 104 (276)
T 3r1i_A 28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAG---VGGKALPIRCDVTQPDQVRGMLDQMT 104 (276)
T ss_dssp GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999987655444333322 2357899999999999999998865
Q ss_pred ----CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||....... .++.+..+++|+.|+.++++++.. .+...+||++||.+.+....
T Consensus 105 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~------- 177 (276)
T 3r1i_A 105 GELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINI------- 177 (276)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCC-------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCC-------
Confidence 68999999998654322 223456889999999988887644 33224899999977654211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
..+...|++||++.+.+++.++.+ .|+++++|+||.|.++..... ......+....+ ..
T Consensus 178 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~---~~~~~~~~~~~p------------~~ 239 (276)
T 3r1i_A 178 ---PQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL---ADYHALWEPKIP------------LG 239 (276)
T ss_dssp ---SSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG---GGGHHHHGGGST------------TS
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc---hHHHHHHHhcCC------------CC
Confidence 134578999999999999999987 489999999999998754321 111222222111 12
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
.+..++|+|++++.++...... ..|+++++.+|..
T Consensus 240 r~~~pedvA~~v~fL~s~~~~~----------itG~~i~vdGG~~ 274 (276)
T 3r1i_A 240 RMGRPEELTGLYLYLASAASSY----------MTGSDIVIDGGYT 274 (276)
T ss_dssp SCBCGGGSHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred CCcCHHHHHHHHHHHcCccccC----------ccCcEEEECcCcc
Confidence 3778899999999988765432 4458999988753
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=207.60 Aligned_cols=226 Identities=16% Similarity=0.097 Sum_probs=166.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccC--CCHHHHHHHhhc
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI--NDKSLLDKIFNV 152 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~v~~~~~~ 152 (424)
..+++|+++||||+|+||++++++|+++|++|++++|+.+........... .....+.++.+|+ +|.++++++++.
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~ 85 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINE--ETGRQPQWFILDLLTCTSENCQQLAQR 85 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHSCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--hcCCCceEEEEecccCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999976554443332222 1234788999999 999999888876
Q ss_pred c-----CccEEEEcccccCc--h---hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCC
Q 042406 153 V-----AFTHVMHLAAQAGV--R---YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~--~---~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~ 218 (424)
+ ++|+||||||.... . ...++.+..+++|+.|+.++++++ ++.+. .+||++||...+..
T Consensus 86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~------ 158 (252)
T 3f1l_A 86 IAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDA-GSLVFTSSSVGRQG------ 158 (252)
T ss_dssp HHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGTSC------
T ss_pred HHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC-CEEEEECChhhccC------
Confidence 5 68999999998532 1 122233578999999999988887 44444 39999999776542
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIYG--LSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
..+...|++||++.+.+++.++.+++ +++++|+||.|..+ +....... ..
T Consensus 159 ------~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~----------~~~~~~~~------------~~ 210 (252)
T 3f1l_A 159 ------RANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTA----------MRASAFPT------------ED 210 (252)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSH----------HHHHHCTT------------CC
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCc----------hhhhhCCc------------cc
Confidence 14457899999999999999998863 99999999999765 22111111 11
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHH
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVS 347 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~ 347 (424)
...+...+|+|.+++.++...... ..|+++++.+|...++.
T Consensus 211 ~~~~~~p~dva~~~~~L~s~~~~~----------itG~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 211 PQKLKTPADIMPLYLWLMGDDSRR----------KTGMTFDAQPGRKPGIS 251 (252)
T ss_dssp GGGSBCTGGGHHHHHHHHSGGGTT----------CCSCEEESSCC------
T ss_pred hhccCCHHHHHHHHHHHcCccccC----------CCCCEEEeCCCcCCCCC
Confidence 224778899999999988765432 44589999998876654
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=216.16 Aligned_cols=235 Identities=13% Similarity=0.111 Sum_probs=168.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhh--hccCCeEEEEccCCCHHHHHHHhhc
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL--LERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
..+++|+|+||||+|+||++++++|+++|++|++++|+.+............. ....++.++.+|++|.++++++++.
T Consensus 14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 93 (303)
T 1yxm_A 14 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 93 (303)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHH
Confidence 35788999999999999999999999999999999997654333322222110 1245789999999999999998886
Q ss_pred c-----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCC
Q 042406 153 V-----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
+ ++|+||||||..... ...++.+..+++|+.|+.++++++... +. ++||++||.+.++.
T Consensus 94 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~------- 165 (303)
T 1yxm_A 94 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIVPTKAGF------- 165 (303)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECCCCTTCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CeEEEEEeecccCC-------
Confidence 4 579999999965322 122334678999999999999987552 22 38999999873321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC--cHHHHHHHHHcCCceeEEecCCCC
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM--AYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.....|+.+|.+.+.+++.++.++ |+++++||||.|+|+...... ....+...+...
T Consensus 166 ------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------ 227 (303)
T 1yxm_A 166 ------PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQK------------ 227 (303)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGG------------
T ss_pred ------CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhc------------
Confidence 345789999999999999998875 899999999999998321110 000111111110
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
.....+.+++|+|++++.++...... ..|+++++.+|...+
T Consensus 228 ~p~~~~~~~~dvA~~i~~l~~~~~~~----------~~G~~~~v~gG~~~~ 268 (303)
T 1yxm_A 228 IPAKRIGVPEEVSSVVCFLLSPAASF----------ITGQSVDVDGGRSLY 268 (303)
T ss_dssp STTSSCBCTHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGC
T ss_pred CcccCCCCHHHHHHHHHHHhCccccc----------CCCcEEEECCCeecc
Confidence 01123789999999999998654321 344899999886543
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=209.71 Aligned_cols=238 Identities=13% Similarity=0.068 Sum_probs=169.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch--------hhhHHHHHhh-hhccCCeEEEEccCCCHH
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY--------ETSLKKARKG-LLERAGVFVIDADINDKS 144 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~ 144 (424)
..++++|++|||||+|+||+++++.|+++|++|++++|+.... .+.......+ .....++.++.+|++|.+
T Consensus 23 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 102 (299)
T 3t7c_A 23 AGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFD 102 (299)
T ss_dssp CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred ccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 3457899999999999999999999999999999999973210 1111111111 112457899999999999
Q ss_pred HHHHHhhcc-----CccEEEEcccccCchh-----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCccc
Q 042406 145 LLDKIFNVV-----AFTHVMHLAAQAGVRY-----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVY 210 (424)
Q Consensus 145 ~v~~~~~~~-----~~d~vi~~Ag~~~~~~-----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vy 210 (424)
+++++++.+ ++|+||||||...... ..++.+..+++|+.|+.++++++... +...+||++||...+
T Consensus 103 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~ 182 (299)
T 3t7c_A 103 AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGL 182 (299)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhc
Confidence 999988754 6899999999865322 22334679999999999988876442 323489999998776
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCc------------HHHH
Q 042406 211 GVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMA------------YFFF 275 (424)
Q Consensus 211 g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~------------~~~~ 275 (424)
... .....|++||++.+.+++.++.++ |+++++|+||.|.++....... ...+
T Consensus 183 ~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 250 (299)
T 3t7c_A 183 RGA------------ENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDF 250 (299)
T ss_dssp SCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHH
T ss_pred cCC------------CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHH
Confidence 421 345789999999999999999875 8999999999999985432100 0000
Q ss_pred HHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 276 TRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
......... .. ..+...+|+|++++.++...... ..|+++++.+|..+
T Consensus 251 ~~~~~~~~~----------~p-~r~~~pedvA~~v~fL~s~~a~~----------itG~~i~vdGG~~l 298 (299)
T 3t7c_A 251 QVASRQMHV----------LP-IPYVEPADISNAILFLVSDDARY----------ITGVSLPVDGGALL 298 (299)
T ss_dssp HHHHHHHSS----------SS-CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred HHHhhhhcc----------cC-cCCCCHHHHHHHHHHHhCccccc----------CcCCEEeeCCCccc
Confidence 000000000 00 23788999999999998765432 44589999987643
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-26 Score=212.65 Aligned_cols=228 Identities=14% Similarity=0.100 Sum_probs=159.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-eCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGL-DNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.++|+||||||+|+||++++++|+++|++|+++ .|+.+..+....... ....++.++.+|++|.++++++++.+
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 100 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAIT---ESGGEAVAIPGDVGNAADIAAMFSAVDR 100 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH---HTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999887 444332222222111 12357899999999999999998866
Q ss_pred ---CccEEEEcccccCc-h----hhccChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-R----YAMQNPNSYVESNIAGFVNLLETCKSS------DPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-~----~~~~~~~~~~~~N~~g~~~ll~a~~~~------~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||.... . ...++.+..+++|+.|+.++++++... +...+||++||...+....
T Consensus 101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----- 175 (272)
T 4e3z_A 101 QFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSA----- 175 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCT-----
T ss_pred hCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCC-----
Confidence 78999999998653 1 123344679999999999988877543 1224899999977653210
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.....|++||++.+.+++.++.++ |+++++|+||.|.++...... .+.....+.. ...
T Consensus 176 ------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~------------~~~ 236 (272)
T 4e3z_A 176 ------TQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASGG-LPDRAREMAP------------SVP 236 (272)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------------------------CCT
T ss_pred ------CCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCcccccC-ChHHHHHHhh------------cCC
Confidence 234679999999999999998876 899999999999988543210 1111111111 122
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
...+.+++|+|++++.++...... ..|++|++.+|
T Consensus 237 ~~~~~~~edvA~~i~~l~s~~~~~----------~tG~~i~vdgG 271 (272)
T 4e3z_A 237 MQRAGMPEEVADAILYLLSPSASY----------VTGSILNVSGG 271 (272)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred cCCCcCHHHHHHHHHHHhCCcccc----------ccCCEEeecCC
Confidence 234678999999999998765432 34589999876
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=209.88 Aligned_cols=229 Identities=11% Similarity=0.059 Sum_probs=167.8
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+++|+++||||+ |+||+++++.|+++|++|++++|+.+ ........... ...+.++.+|++|.++++++++.+
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~ 78 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQE---LNSPYVYELDVSKEEHFKSLYNSV 78 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHh---cCCcEEEEcCCCCHHHHHHHHHHH
Confidence 3678999999999 99999999999999999999999764 22222222221 124789999999999999988765
Q ss_pred -----CccEEEEcccccCc--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGV--------RYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||.... ....++.+..+++|+.|+.++++++..... ..+||++||.+.+..
T Consensus 79 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------- 151 (275)
T 2pd4_A 79 KKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKY------- 151 (275)
T ss_dssp HHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB-------
T ss_pred HHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCC-------
Confidence 68999999998643 122334467999999999999999877521 138999999766532
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++..........+...+....++
T Consensus 152 -----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----------- 215 (275)
T 2pd4_A 152 -----MAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPL----------- 215 (275)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT-----------
T ss_pred -----CCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCCc-----------
Confidence 1345789999999999999998876 899999999999987532211122223333222211
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+.+.+|+|++++.++...... ..|+++++.+|.
T Consensus 216 -~~~~~p~dva~~~~~l~s~~~~~----------~tG~~~~vdgg~ 250 (275)
T 2pd4_A 216 -RKNVSLEEVGNAGMYLLSSLSSG----------VSGEVHFVDAGY 250 (275)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred -CCCCCHHHHHHHHHHHhCccccC----------CCCCEEEECCCc
Confidence 12668999999999988654321 344889998774
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=214.28 Aligned_cols=227 Identities=16% Similarity=0.097 Sum_probs=166.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||+++++.|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE---AGVEADGRTCDVRSVPEIEALVAAVVE 95 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999976443332222211 1356899999999999999888754
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS------DPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~------~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.+. +. ++||++||...+..
T Consensus 96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~-g~iv~isS~~~~~~-------- 166 (277)
T 2rhc_B 96 RYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT-GRIVNIASTGGKQG-------- 166 (277)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTE-EEEEEECCGGGTSC--------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCC-eEEEEECccccccC--------
Confidence 6799999999754321 12234679999999999999987654 33 39999999766532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcH-----------HHHHHHHHcCCcee
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAY-----------FFFTRDIIRGKRIT 286 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~-----------~~~~~~~~~~~~~~ 286 (424)
..+...|++||.+.+.+++.++.++ |+++++|+||.|+++.... .. ......+...
T Consensus 167 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---- 236 (277)
T 2rhc_B 167 ----VVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAAS--VREHYSDIWEVSTEEAFDRITAR---- 236 (277)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHH--HHHHHHHHHTCCHHHHHHHHHHH----
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhh--hhhhcccccccchHHHHHHHHhc----
Confidence 1345789999999999999998774 7999999999999873210 00 0001111111
Q ss_pred EEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 287 VYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 287 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.....+++++|+|++++.++..+... ..|++|++.+|.
T Consensus 237 --------~p~~r~~~~~dvA~~v~~l~s~~~~~----------~tG~~~~vdGG~ 274 (277)
T 2rhc_B 237 --------VPIGRYVQPSEVAEMVAYLIGPGAAA----------VTAQALNVCGGL 274 (277)
T ss_dssp --------STTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred --------CCCCCCcCHHHHHHHHHHHhCchhcC----------CCCcEEEECCCc
Confidence 11234889999999999988765322 344899998874
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=214.55 Aligned_cols=235 Identities=14% Similarity=0.052 Sum_probs=166.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||++++++|+++|++|++++|+.+.................++.++.+|++|.++++++++.+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 82 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999765433322222111000116899999999999999888764
Q ss_pred ---CccEEEEcccccCchh--------hccChHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY--------AMQNPNSYVESNIAGFVNLLETCKSSDP--QPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~--------~~~~~~~~~~~N~~g~~~ll~a~~~~~~--~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++..... +++||++||...+...
T Consensus 83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 155 (280)
T 1xkq_A 83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQA------- 155 (280)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSC-------
T ss_pred hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccCCC-------
Confidence 6799999999754321 2233467899999999998887754211 1499999998776431
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-cH------HHHHHHHHcCCceeEEec
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDM-AY------FFFTRDIIRGKRITVYEA 290 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~-~~------~~~~~~~~~~~~~~~~~~ 290 (424)
..+...|++||++.+.+++.++.+ .|+++++|+||.|+++...... .. ..+...+...
T Consensus 156 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 223 (280)
T 1xkq_A 156 ----QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKEC-------- 223 (280)
T ss_dssp ----CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTT--------
T ss_pred ----CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcC--------
Confidence 034578999999999999999866 4899999999999987421100 00 0011111110
Q ss_pred CCCCccccccccHHHHHHHHHHHhhhc-cccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 291 PDGASVARDFTYIDDIVKGCLAGLDTA-KKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 291 ~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
.....+.+++|+|++++.++... ... ..|+++++.+|..
T Consensus 224 ----~p~~~~~~pedvA~~v~~l~s~~~~~~----------~tG~~i~vdgG~~ 263 (280)
T 1xkq_A 224 ----IPIGAAGKPEHIANIILFLADRNLSFY----------ILGQSIVADGGTS 263 (280)
T ss_dssp ----CTTSSCBCHHHHHHHHHHHHCHHHHTT----------CCSCEEEESTTGG
T ss_pred ----CCCCCCCCHHHHHHHHHHhcCcccccC----------ccCCeEEECCCcc
Confidence 11224889999999999988754 321 3448999988754
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-26 Score=209.46 Aligned_cols=237 Identities=11% Similarity=0.048 Sum_probs=162.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc-hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY-YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++|+++||||+|+||+++++.|+++|++|++++|+.+. .......... ....++.++.+|++|.++++++++.+
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 79 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAA--QHGVKVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHH--HHTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHh--ccCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999997654 3322222111 11346889999999999999988754
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++. +.+.+ +||++||...+...
T Consensus 80 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 149 (260)
T 1x1t_A 80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFG-RIINIASAHGLVAS--------- 149 (260)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC---------
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEECcHHhCcCC---------
Confidence 679999999975432 1223346799999999988887764 34443 99999998776421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCc-eeEEecC-CCCccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKR-ITVYEAP-DGASVA 297 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~ 297 (424)
.+...|+.||.+.+.+++.++.++ |+++++|+||.|.+|..... ....... .+.. -...... ......
T Consensus 150 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~p~ 222 (260)
T 1x1t_A 150 ---ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQ--ISALAEK--NGVDQETAARELLSEKQPS 222 (260)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------CHHHHCTT
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHh--hhhhccc--cCCchHHHHHHHhhccCCC
Confidence 345789999999999999998775 89999999999998853211 0000000 0000 0000000 000112
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+.+++|+|++++.++...... ..|++|++.+|.
T Consensus 223 ~~~~~p~dva~~~~~l~s~~~~~----------~tG~~~~vdgG~ 257 (260)
T 1x1t_A 223 LQFVTPEQLGGTAVFLASDAAAQ----------ITGTTVSVDGGW 257 (260)
T ss_dssp CCCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHhChhhcC----------CCCCEEEECCCc
Confidence 34889999999999988754322 344899998874
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=211.62 Aligned_cols=228 Identities=11% Similarity=0.074 Sum_probs=164.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++|+|+||||+|+||+++++.|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~d~~~v~~~~~~~~ 116 (285)
T 2c07_A 40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS---FGYESSGYAGDVSKKEEISEVINKIL 116 (285)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT---TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHh---cCCceeEEECCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999999999999998865433322222111 1356889999999999999988754
Q ss_pred ----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++. +.+.+ +||++||...+...
T Consensus 117 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~-------- 187 (285)
T 2c07_A 117 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYG-RIINISSIVGLTGN-------- 187 (285)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHCC--------
T ss_pred HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-EEEEECChhhccCC--------
Confidence 679999999986432 1233446789999999877777664 44544 99999998665321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.+...|++||.+.+.+++.++.++ |+++++|+||.+.++.... ....+...+....+ ..
T Consensus 188 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~------------~~ 249 (285)
T 2c07_A 188 ----VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK--ISEQIKKNIISNIP------------AG 249 (285)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-------CCHHHHHHHHTTCT------------TS
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhh--cCHHHHHHHHhhCC------------CC
Confidence 345789999999999999998775 8999999999999875332 11222233322211 12
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+++++|+|++++.++...... ..|++|++.+|.
T Consensus 250 ~~~~~~dvA~~~~~l~~~~~~~----------~~G~~i~v~gG~ 283 (285)
T 2c07_A 250 RMGTPEEVANLACFLSSDKSGY----------INGRVFVIDGGL 283 (285)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred CCCCHHHHHHHHHHHhCCCcCC----------CCCCEEEeCCCc
Confidence 3889999999999988765421 334899998874
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=205.89 Aligned_cols=233 Identities=11% Similarity=0.075 Sum_probs=172.1
Q ss_pred CCCCCeEEEEcCCCh--hHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAGF--VGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
++++|+++||||+|+ ||++++++|+++|++|++++|+.+..+ ...... ......++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~-~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEK-SVHELA-GTLDRNDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHHH-HTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHH-HHHHHH-HhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence 578899999999976 999999999999999999999743222 222221 1223347999999999999999998865
Q ss_pred -----CccEEEEcccccCc--------hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGV--------RYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~--------~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||.... ....++.+..+++|+.++.++++++..... ..+||++||.+.+..
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~------- 154 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELV------- 154 (266)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSC-------
T ss_pred HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccccc-------
Confidence 68999999998652 112223457899999999999999877543 238999999777642
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
......|++||++.+.+++.++.++ |+++++|+||.|.++..............+....+.
T Consensus 155 -----~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~----------- 218 (266)
T 3oig_A 155 -----MPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPL----------- 218 (266)
T ss_dssp -----CTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTT-----------
T ss_pred -----CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcCCC-----------
Confidence 1345789999999999999998775 899999999999987543322222333333332221
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
..+.+.+|+|++++.++...... ..|+++++.+|-..
T Consensus 219 -~~~~~p~dva~~v~~l~s~~~~~----------~tG~~i~vdGG~~~ 255 (266)
T 3oig_A 219 -RRTTTPEEVGDTAAFLFSDMSRG----------ITGENLHVDSGFHI 255 (266)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred -CCCCCHHHHHHHHHHHcCCchhc----------CcCCEEEECCCeEE
Confidence 23678999999999998765432 34589999887543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=211.27 Aligned_cols=221 Identities=12% Similarity=0.084 Sum_probs=158.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+..+++|+||||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 26 m~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~ 102 (301)
T 3tjr_A 26 LSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRG---QGFDAHGVVCDVRHLDEMVRLADEA 102 (301)
T ss_dssp CCCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred HhccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCceEEEEccCCCHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999976554443333222 2457899999999999999988865
Q ss_pred -----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++. +.+...+||++||...+..
T Consensus 103 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~-------- 174 (301)
T 3tjr_A 103 FRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVP-------- 174 (301)
T ss_dssp HHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC--------
T ss_pred HHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCC--------
Confidence 689999999986432 1233446799999999999888764 3342348999999877642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHH-----HHcCCceeEEecCC
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRD-----IIRGKRITVYEAPD 292 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 292 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++... ..... .....+...+ +
T Consensus 175 ----~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~------~~~~~~~~~~~~~~~~~~~~---~ 241 (301)
T 3tjr_A 175 ----NAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVS------NSERIRGADYGMSATPEGAF---G 241 (301)
T ss_dssp ----CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHH------HHHHHC------------------
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCcccccccc------ccccccchhhccccChhhhc---c
Confidence 1445789999999999999998775 899999999999876211 00000 0001111111 1
Q ss_pred CCccccccccHHHHHHHHHHHhhhcc
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
.......+++++|+|++++.+++...
T Consensus 242 ~~~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 242 PLPTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp -------CCCHHHHHHHHHHHHHHTC
T ss_pred ccccccCCCCHHHHHHHHHHHHhcCC
Confidence 22234468999999999999998764
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-26 Score=208.28 Aligned_cols=229 Identities=14% Similarity=0.074 Sum_probs=163.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+|+||||+|+||++++++|+++|++|++++|+.+......... ....++.++.+|++|.+++.++++.+
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV----GTPDQIQFFQHDSSDEDGWTKLFDATEK 78 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CCTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----hccCceEEEECCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999654322221111 11257899999999999999988864
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++.++ +++.+..++||++||...+...
T Consensus 79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 149 (251)
T 1zk4_A 79 AFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD--------- 149 (251)
T ss_dssp HHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC---------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCC---------
Confidence 5799999999754321 2223467899999987766555 4455542489999998876531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.+...|+.||++.+.+++.++.+ .|+++++||||.++++..... .. ...... .. .....
T Consensus 150 ---~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~-~~-~~~~~~-~~----------~~~~~ 213 (251)
T 1zk4_A 150 ---PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDL-PG-AEEAMS-QR----------TKTPM 213 (251)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTS-TT-HHHHHT-ST----------TTCTT
T ss_pred ---CCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhc-Cc-hhhhHH-Hh----------hcCCC
Confidence 34578999999999999988763 479999999999998743210 00 000000 00 11112
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
..+++++|+|++++.++...... ..|++|++.+|..
T Consensus 214 ~~~~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gG~~ 249 (251)
T 1zk4_A 214 GHIGEPNDIAYICVYLASNESKF----------ATGSEFVVDGGYT 249 (251)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred CCCcCHHHHHHHHHHHcCccccc----------ccCcEEEECCCcc
Confidence 34889999999999998765321 2348999998753
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=206.26 Aligned_cols=231 Identities=13% Similarity=0.070 Sum_probs=163.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+++||||+|+||++++++|+++|++|++++|+.+ ......... ...++.++.+|++|.++++++++.+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 76 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIAR---HGVKAVHHPADLSDVAQIEALFALAERE 76 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHT---TSCCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHh---cCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999765 221111111 1346889999999999999998854
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||...... ..++.+..+++|+.|+.++.++ +++.+.+ +||++||.+.+...
T Consensus 77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~---------- 145 (255)
T 2q2v_A 77 FGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWG-RIINIASVHGLVGS---------- 145 (255)
T ss_dssp HSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEcCchhccCC----------
Confidence 6799999999754321 2233467999999987666554 4555544 99999998776421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHH--HHHcCCc---eeEEecCCCCc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTR--DIIRGKR---ITVYEAPDGAS 295 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~ 295 (424)
.+...|+.||.+.+.+++.++.++ |+++++|+||.|++|... .+.. .-..+.. ...+. ....
T Consensus 146 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~ 215 (255)
T 2q2v_A 146 --TGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQ------KQIDDRAANGGDPLQAQHDLL--AEKQ 215 (255)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHH------HHHHHHHHHTCCHHHHHHHHH--TTTC
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchh------hhcccccccccchHHHHHHHH--hccC
Confidence 345789999999999999999875 799999999999987321 1110 0000000 00000 0111
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
....+++++|+|++++.++...... ..|++|++.+|..
T Consensus 216 p~~~~~~~~dvA~~~~~l~s~~~~~----------~tG~~~~vdgG~~ 253 (255)
T 2q2v_A 216 PSLAFVTPEHLGELVLFLCSEAGSQ----------VRGAAWNVDGGWL 253 (255)
T ss_dssp TTCCCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTGG
T ss_pred CCCCCcCHHHHHHHHHHHhCCccCC----------CCCCEEEECCCcc
Confidence 2235899999999999888754322 3348999988753
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=208.08 Aligned_cols=240 Identities=10% Similarity=0.037 Sum_probs=163.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+........... .....++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIAS-LVSGAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-HSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999975443332222211 001237899999999999999888743
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+...
T Consensus 83 ~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~---------- 151 (260)
T 2z1n_A 83 LGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWG-RMVYIGSVTLLRPW---------- 151 (260)
T ss_dssp TTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC----------
T ss_pred hcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEECchhhcCCC----------
Confidence 3799999999754321 22344679999999986666554 445544 99999998877531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.+...|+.||++.+.+++.++.++ |+++++|+||.|+++.......................+ ........+
T Consensus 152 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~r~ 226 (260)
T 2z1n_A 152 --QDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSM---ASRIPMGRV 226 (260)
T ss_dssp --TTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC--------------------------CCTTSSC
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHH---HhcCCCCCc
Confidence 345789999999999999998775 899999999999998543100000000000000000000 011112347
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+++|+|++++.++...... ..|+++++.+|.
T Consensus 227 ~~~~dva~~v~~l~s~~~~~----------~tG~~i~vdGG~ 258 (260)
T 2z1n_A 227 GKPEELASVVAFLASEKASF----------ITGAVIPVDGGA 258 (260)
T ss_dssp CCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTT
T ss_pred cCHHHHHHHHHHHhCccccC----------CCCCEEEeCCCc
Confidence 89999999999998765422 345899998764
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-26 Score=208.94 Aligned_cols=225 Identities=15% Similarity=0.122 Sum_probs=163.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-C
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-A 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~ 154 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+..... . ...++.++.+|++|.++++++++.. +
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~----~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQEL----E----KYPGIQTRVLDVTKKKQIDQFANEVER 74 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGG----G----GSTTEEEEECCTTCHHHHHHHHHHCSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----H----hccCceEEEeeCCCHHHHHHHHHHhCC
Confidence 36789999999999999999999999999999999964322111 1 1137899999999999999887755 6
Q ss_pred ccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|+||||||...... ..++.+..+++|+.|+.++++++. +.+.+ +||++||...+.... .
T Consensus 75 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~~-----------~ 142 (246)
T 2ag5_A 75 LDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSG-NIINMSSVASSVKGV-----------V 142 (246)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCSBTTTBCC-----------T
T ss_pred CCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEechHhCcCCC-----------C
Confidence 799999999865321 223345789999999998888764 33443 999999987654210 1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC----CcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD----MAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
+...|++||++.+.+++.++.++ |+++++||||.|++|..... .........+....+ ...
T Consensus 143 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 210 (246)
T 2ag5_A 143 NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQK------------TGR 210 (246)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCT------------TSS
T ss_pred CCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCC------------CCC
Confidence 45789999999999999998775 89999999999998732100 000111122222111 123
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 211 ~~~~~dvA~~v~~l~s~~~~~----------~tG~~i~vdgG~ 243 (246)
T 2ag5_A 211 FATAEEIAMLCVYLASDESAY----------VTGNPVIIDGGW 243 (246)
T ss_dssp CEEHHHHHHHHHHHHSGGGTT----------CCSCEEEECTTG
T ss_pred CCCHHHHHHHHHHHhCccccC----------CCCCEEEECCCc
Confidence 788999999999988754432 344899998774
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=207.55 Aligned_cols=233 Identities=13% Similarity=0.069 Sum_probs=163.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC-chhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN-YYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
++++|++|||||+|+||++++++|+++|++|+++++... .......... ....++.++.+|++|.++++++++.+
T Consensus 5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (259)
T 3edm_A 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIE---KLGRSALAIKADLTNAAEVEAAISAAA 81 (259)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHH---TTTSCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999955443 2222222221 12357899999999999999998865
Q ss_pred ----CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCccc-CCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVY-GVNKKVPFSEKD 222 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vy-g~~~~~~~~e~~ 222 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++..... ..+||++||...+ ..
T Consensus 82 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 151 (259)
T 3edm_A 82 DKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGG---------- 151 (259)
T ss_dssp HHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCC----------
T ss_pred HHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCC----------
Confidence 689999999975221 12223367899999999999999876532 2389999998776 31
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
..+...|++||++.+.+++.++.++ ++++++|+||.|.++...... .......+. .......+
T Consensus 152 --~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~-~~~~~~~~~------------~~~p~~r~ 216 (259)
T 3edm_A 152 --GPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFT-KPEVRERVA------------GATSLKRE 216 (259)
T ss_dssp --STTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC-----------------------------------CC
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCccccccc-ChHHHHHHH------------hcCCCCCC
Confidence 1345789999999999999999886 399999999999887432110 001111111 11223347
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccH
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPV 346 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 346 (424)
.+++|+|++++.++...... ..|++|++.+|...+.
T Consensus 217 ~~pedva~~v~~L~s~~~~~----------itG~~i~vdGg~~~~~ 252 (259)
T 3edm_A 217 GSSEDVAGLVAFLASDDAAY----------VTGACYDINGGVLFSE 252 (259)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESBCSSBC-
T ss_pred cCHHHHHHHHHHHcCccccC----------ccCCEEEECCCcCCCC
Confidence 78999999999988765432 4458999998865443
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=206.11 Aligned_cols=229 Identities=13% Similarity=0.034 Sum_probs=167.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|++|||||+|+||++++++|+++|++|++++++............. ....++.++.+|++|.++++++++.+
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIE--QAGGRAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH--HTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH--hcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998765322221111111 12457899999999999999988865
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.... ...+||++||...... +.
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~-----------~~ 174 (271)
T 3v2g_A 106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELV-----------PW 174 (271)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCC-----------CS
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccC-----------CC
Confidence 6899999999864322 233446799999999999999887652 1248999998544221 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.|.++....... .........+. ..+..
T Consensus 175 ~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~---~~~~~~~~~~~------------~r~~~ 239 (271)
T 3v2g_A 175 PGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGD---HAEAQRERIAT------------GSYGE 239 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCS---SHHHHHHTCTT------------SSCBC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccch---hHHHHHhcCCC------------CCCCC
Confidence 456789999999999999998875 8999999999999986432211 11222222211 12678
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+|+|++++.++...... ..|+++++.+|.
T Consensus 240 pedvA~~v~fL~s~~~~~----------itG~~i~vdGG~ 269 (271)
T 3v2g_A 240 PQDIAGLVAWLAGPQGKF----------VTGASLTIDGGA 269 (271)
T ss_dssp HHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred HHHHHHHHHHHhCcccCC----------ccCCEEEeCcCc
Confidence 999999999888655432 445899998874
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=211.31 Aligned_cols=226 Identities=16% Similarity=0.154 Sum_probs=168.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+..... ..+ . ..++.++.+|++|.++++++++++
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~----~~~-~-~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA----VAA-L-EAEAIAVVADVSDPKAVEAVFAEALE 76 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----HHT-C-CSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHH-h-cCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999965332221 111 1 147889999999999999988765
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++..... ..+||++||...++.
T Consensus 77 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------------- 143 (263)
T 2a4k_A 77 EFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA------------- 143 (263)
T ss_dssp HHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH-------------
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcCC-------------
Confidence 6899999999864321 1223357899999999999998876531 249999999887731
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.+...|+.||.+.+.+++.++.++ |+++++|+||.|.++..... .......+....+. ..+.+
T Consensus 144 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~------------~~~~~ 209 (263)
T 2a4k_A 144 FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL--PPWAWEQEVGASPL------------GRAGR 209 (263)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS--CHHHHHHHHHTSTT------------CSCBC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhc--CHHHHHHHHhcCCC------------CCCcC
Confidence 234789999999999999998764 89999999999998753321 12222223222211 13788
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
.+|+|++++.++...... ..|+++++.+|..+
T Consensus 210 p~dvA~~v~~l~s~~~~~----------~tG~~i~vdgG~~~ 241 (263)
T 2a4k_A 210 PEEVAQAALFLLSEESAY----------ITGQALYVDGGRSI 241 (263)
T ss_dssp HHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTTT
T ss_pred HHHHHHHHHHHhCccccC----------CcCCEEEECCCccc
Confidence 999999999988764422 34489999887644
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-26 Score=208.88 Aligned_cols=228 Identities=15% Similarity=0.078 Sum_probs=161.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+...... .+ . ..++.++.+|++|.++++++++.+
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~----~~-~-~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA----AE-L-GERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH----HH-H-CTTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----HH-c-CCceEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999654322211 11 1 357899999999999999888765
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLE----TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~----a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++.+ .+++.+ ++||++||...+...
T Consensus 77 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~--------- 145 (253)
T 1hxh_A 77 RLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASVSSWLPI--------- 145 (253)
T ss_dssp HHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcchhhcCCC---------
Confidence 6799999999864321 223346789999998766655 445555 499999998876421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.+...|++||.+.+.+++.++.++ |+++++||||.|++|...... ............. .....
T Consensus 146 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~~~--------~~~p~ 213 (253)
T 1hxh_A 146 ---EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASL-PKGVSKEMVLHDP--------KLNRA 213 (253)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHS-CTTCCHHHHBCBT--------TTBTT
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhcc-chhhhHHHHhhhh--------ccCcc
Confidence 345789999999999999998763 899999999999987311000 0000000011000 01112
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+.+++|+|++++.++..+... ..|+++++.+|.
T Consensus 214 ~~~~~~~dvA~~~~~l~s~~~~~----------~tG~~~~vdgG~ 248 (253)
T 1hxh_A 214 GRAYMPERIAQLVLFLASDESSV----------MSGSELHADNSI 248 (253)
T ss_dssp CCEECHHHHHHHHHHHHSGGGTT----------CCSCEEEESSSC
T ss_pred CCCCCHHHHHHHHHHHcCccccC----------CCCcEEEECCCc
Confidence 24789999999999998765422 344899998874
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=203.82 Aligned_cols=221 Identities=15% Similarity=0.143 Sum_probs=162.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+++||||+|+||++++++|+++|++|++++|+.+.... ...+ . ++.++.+|++|.++++++++++
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~----~~~~-~---~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLRE----AAEA-V---GAHPVVMDVADPASVERGFAEALAH 74 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HHHT-T---TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHH-c---CCEEEEecCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999996432221 1111 1 3789999999999999988764
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.+. +. ++||++||...++.
T Consensus 75 ~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~----------- 142 (245)
T 1uls_A 75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNP-GSIVLTASRVYLGN----------- 142 (245)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC-EEEEEECCGGGGCC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEccchhcCC-----------
Confidence 5799999999754321 12334578999999999988877543 33 38999999874432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.+...|+.||.+.+.+++.++.++ |+++++|+||.|.++.... ........+....+. ..+
T Consensus 143 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~p~------------~~~ 206 (245)
T 1uls_A 143 --LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK--VPEKVREKAIAATPL------------GRA 206 (245)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS--SCHHHHHHHHHTCTT------------CSC
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhh--cCHHHHHHHHhhCCC------------CCC
Confidence 345789999999999999998764 8999999999998875331 111222222222111 127
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
.+.+|+|++++.++...... ..|+++++.+|..
T Consensus 207 ~~~~dvA~~v~~l~s~~~~~----------~tG~~~~vdgG~~ 239 (245)
T 1uls_A 207 GKPLEVAYAALFLLSDESSF----------ITGQVLFVDGGRT 239 (245)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred cCHHHHHHHHHHHhCchhcC----------CcCCEEEECCCcc
Confidence 88999999999988764322 3448999988753
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-26 Score=207.36 Aligned_cols=215 Identities=17% Similarity=0.129 Sum_probs=164.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----C
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----A 154 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----~ 154 (424)
+|+|+||||+|+||++++++|+++|++|++++|+.+ ...+.++.+|++|.++++++++.+ +
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~---------------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 66 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE---------------GEDLIYVEGDVTREEDVRRAVARAQEEAP 66 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC---------------SSSSEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc---------------ccceEEEeCCCCCHHHHHHHHHHHHhhCC
Confidence 578999999999999999999999999999999643 134589999999999999998854 6
Q ss_pred ccEEEEcccccCchhhc----c----ChHHHHHHHHHHHHHHHHHHHhcCC---------CCeEEEecCCcccCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRYAM----Q----NPNSYVESNIAGFVNLLETCKSSDP---------QPAIVWASSSSVYGVNKKVP 217 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~----~----~~~~~~~~N~~g~~~ll~a~~~~~~---------~~~~v~~SS~~vyg~~~~~~ 217 (424)
+|+||||||........ + +.+..+++|+.++.++++++.+... ..+||++||...+...
T Consensus 67 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---- 142 (242)
T 1uay_A 67 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ---- 142 (242)
T ss_dssp EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC----
T ss_pred ceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC----
Confidence 79999999985432111 1 4567899999999999998865421 1289999998887531
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.+...|+.||++.+.+++.++.++ |+++++||||.|+++.... ....+...+....+.
T Consensus 143 --------~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~~--------- 203 (242)
T 1uay_A 143 --------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQG--LPEKAKASLAAQVPF--------- 203 (242)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHT--SCHHHHHHHHTTCCS---------
T ss_pred --------CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhc--cchhHHHHHHhhCCC---------
Confidence 346789999999999999998775 8999999999999974321 112223333333221
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
...+++++|+|++++.++... . ..|++|++.+|..++
T Consensus 204 --~~~~~~~~dva~~~~~l~~~~-~-----------~~G~~~~v~gG~~~~ 240 (242)
T 1uay_A 204 --PPRLGRPEEYAALVLHILENP-M-----------LNGEVVRLDGALRMA 240 (242)
T ss_dssp --SCSCCCHHHHHHHHHHHHHCT-T-----------CCSCEEEESTTCCCC
T ss_pred --cccCCCHHHHHHHHHHHhcCC-C-----------CCCcEEEEcCCeecC
Confidence 023789999999999998762 1 334899999886544
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-26 Score=208.86 Aligned_cols=224 Identities=12% Similarity=0.078 Sum_probs=159.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-eCCCCchhhhHHHHHhhhhccCCeEE-EEccCCCHHHHHHHhhcc---
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGL-DNFNNYYETSLKKARKGLLERAGVFV-IDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~-~~~Dl~d~~~v~~~~~~~--- 153 (424)
+|+|+||||+|+||++++++|+++|++|+++ +|+.+........... ...++.+ +.+|++|.++++++++..
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARR---RGSPLVAVLGANLLEAEAATALVHQAAEV 77 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHH---TTCSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh---cCCceEEEEeccCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999998 7764433222221111 1235666 999999999999887753
Q ss_pred --CccEEEEcccccCch----hhccChHHHHHHHHHHHHHH----HHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNL----LETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~l----l~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||..... ...++.+..+++|+.|+.++ ++.+++.+.+ +||++||...+...
T Consensus 78 ~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~---------- 146 (245)
T 2ph3_A 78 LGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFG-RIVNITSVVGILGN---------- 146 (245)
T ss_dssp HTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHCC----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC-EEEEEeChhhccCC----------
Confidence 679999999986432 12234467899999995555 4555555654 99999997654311
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.+...|+.||.+.+.+++.++.++ |+++++||||.++++.... ....+...+....+ ...+
T Consensus 147 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~------------~~~~ 210 (245)
T 2ph3_A 147 --PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTER--LPQEVKEAYLKQIP------------AGRF 210 (245)
T ss_dssp --SSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT--SCHHHHHHHHHTCT------------TCSC
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhh--cCHHHHHHHHhcCC------------CCCC
Confidence 345789999999999999998775 8999999999999874321 11122223322211 1248
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
++++|+|++++.++..+... ..|++|++.+|.
T Consensus 211 ~~~~dva~~~~~l~~~~~~~----------~~G~~~~v~gg~ 242 (245)
T 2ph3_A 211 GRPEEVAEAVAFLVSEKAGY----------ITGQTLCVDGGL 242 (245)
T ss_dssp BCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTC
T ss_pred cCHHHHHHHHHHHhCccccc----------ccCCEEEECCCC
Confidence 89999999999998764321 234899998864
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-26 Score=207.62 Aligned_cols=226 Identities=12% Similarity=0.058 Sum_probs=159.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC-CchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN-NYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+. +.... ... . ...++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~--~-~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIR--N-LGRRVLTVKCDVSQPGDVEAFGKQVI 77 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHH--H-TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHH--h-cCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999976 33222 111 1 1357899999999999999887654
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||...... ..++.+..+++|+.|+.+++++ +++.+.+ +||++||...+...
T Consensus 78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 148 (249)
T 2ew8_A 78 STFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWG-RIINLTSTTYWLKI-------- 148 (249)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGGSCC--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCe-EEEEEcchhhccCC--------
Confidence 6799999999864321 2233467899999998877776 5555544 99999998877531
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.+...|++||.+.+.+++.++.++ |+++++|+||.|.++...... .... ...... .. ....
T Consensus 149 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~-~~~~~~--~~--------~~~~ 212 (249)
T 2ew8_A 149 ----EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASA-LSAM-FDVLPN--ML--------QAIP 212 (249)
T ss_dssp ----SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------C--TT--------SSSC
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhcc-ccch-hhHHHH--hh--------CccC
Confidence 345789999999999999998775 899999999999987432000 0000 000000 00 0112
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 213 ~~~~p~dva~~~~~l~s~~~~~----------~tG~~~~vdGG~ 246 (249)
T 2ew8_A 213 RLQVPLDLTGAAAFLASDDASF----------ITGQTLAVDGGM 246 (249)
T ss_dssp SCCCTHHHHHHHHHHTSGGGTT----------CCSCEEEESSSC
T ss_pred CCCCHHHHHHHHHHHcCcccCC----------CCCcEEEECCCc
Confidence 4789999999999998754322 344899998874
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-26 Score=210.43 Aligned_cols=223 Identities=19% Similarity=0.115 Sum_probs=164.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+.++++|++|||||+|+||++++++|+++|++|++++|+.+.. .....+.+|++|.+++.++++.+
T Consensus 23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~--------------~~~~~~~~Dv~~~~~~~~~~~~~ 88 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGI--------------AADLHLPGDLREAAYADGLPGAV 88 (266)
T ss_dssp ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTS--------------CCSEECCCCTTSHHHHHHHHHHH
T ss_pred hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--------------HhhhccCcCCCCHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999965422 12244578999999998888754
Q ss_pred -----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+..
T Consensus 89 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~~-------- 159 (266)
T 3uxy_A 89 AAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGG-AIVNVASCWGLRP-------- 159 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCSBTTBC--------
T ss_pred HHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEECCHHhCCC--------
Confidence 6899999999865422 22334678999999999998887 444544 9999999877642
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC-----CCcHHHHHHHHHcCCceeEEecCC
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP-----DMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|+++.... ..........+...
T Consensus 160 ----~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~---------- 225 (266)
T 3uxy_A 160 ----GPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRT---------- 225 (266)
T ss_dssp ----CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTT----------
T ss_pred ----CCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhc----------
Confidence 1455789999999999999998775 8999999999999873110 00011111222222
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
.....+.+++|+|++++.++...... ..|+++++.+|..++
T Consensus 226 --~p~~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdGG~~~s 266 (266)
T 3uxy_A 226 --VPLGRIAEPEDIADVVLFLASDAARY----------LCGSLVEVNGGKAVA 266 (266)
T ss_dssp --STTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTCCCC
T ss_pred --CCCCCCcCHHHHHHHHHHHhCchhcC----------CcCCEEEECcCEeCC
Confidence 12234789999999999988765432 445899999887543
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=207.26 Aligned_cols=229 Identities=13% Similarity=0.031 Sum_probs=163.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc--hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY--YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+|+++||||+|+||++++++|+++|++|++++|+.+. .......... ...++.++.+|++|.++++++++.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEA---ADQKAVFVGLDVTDKANFDSAIDEAAEK 78 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHT---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999997543 2222211111 1357899999999999999888754
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.+ .+..++||++||...+..
T Consensus 79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~----------- 147 (258)
T 3a28_C 79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQG----------- 147 (258)
T ss_dssp HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSC-----------
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccC-----------
Confidence 6799999999864321 2234467899999999988887754 344249999999877542
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC---------CcHHHHHHHHHcCCceeEEecC
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD---------MAYFFFTRDIIRGKRITVYEAP 291 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 291 (424)
..+...|+.||++.+.+++.++.++ |+++++|+||.|.++..... .........+...
T Consensus 148 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 217 (258)
T 3a28_C 148 -FPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSS--------- 217 (258)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTT---------
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhc---------
Confidence 1345789999999999999998764 89999999999987621100 0000011111111
Q ss_pred CCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
.....+.+++|+|++++.++...... ..|+++++.+|..+
T Consensus 218 ---~p~~r~~~p~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~~~ 257 (258)
T 3a28_C 218 ---IALGRPSVPEDVAGLVSFLASENSNY----------VTGQVMLVDGGMLY 257 (258)
T ss_dssp ---CTTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSSSCC
T ss_pred ---CCCCCccCHHHHHHHHHHHhCcccCC----------CCCCEEEECCCEec
Confidence 01123789999999999988765322 34489999887543
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4e-25 Score=207.14 Aligned_cols=232 Identities=10% Similarity=0.013 Sum_probs=171.0
Q ss_pred CCCCCCCeEEEEcCCCh--hHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh
Q 042406 74 PRSTRGLTVLVTGAAGF--VGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~--iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
+..+++|+|+||||+|+ ||++++++|+++|++|++++|+. ..+....... ...++.++.+|++|.++++++++
T Consensus 21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~---~~~~~~~~~~Dl~~~~~v~~~~~ 95 (280)
T 3nrc_A 21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCA---EFNPAAVLPCDVISDQEIKDLFV 95 (280)
T ss_dssp -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHG---GGCCSEEEECCTTCHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHH---hcCCceEEEeecCCHHHHHHHHH
Confidence 44678999999999955 99999999999999999999976 2222222222 12458999999999999999988
Q ss_pred cc-----CccEEEEcccccCch---------hhccChHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEecCCcccCCCCC
Q 042406 152 VV-----AFTHVMHLAAQAGVR---------YAMQNPNSYVESNIAGFVNLLETCKSSDP--QPAIVWASSSSVYGVNKK 215 (424)
Q Consensus 152 ~~-----~~d~vi~~Ag~~~~~---------~~~~~~~~~~~~N~~g~~~ll~a~~~~~~--~~~~v~~SS~~vyg~~~~ 215 (424)
.+ ++|+||||||..... ...++.+..+++|+.++.++++++..... ..+||++||.+.+..
T Consensus 96 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~--- 172 (280)
T 3nrc_A 96 ELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKA--- 172 (280)
T ss_dssp HHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSC---
T ss_pred HHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccC---
Confidence 76 689999999986531 22334467899999999999988765311 349999999877642
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCC
Q 042406 216 VPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 216 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++..........+........+.
T Consensus 173 ---------~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------- 236 (280)
T 3nrc_A 173 ---------MPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPL------- 236 (280)
T ss_dssp ---------CTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHSTT-------
T ss_pred ---------CCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcCCC-------
Confidence 1455789999999999999998774 899999999999987543222222333333332221
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
..+..++|+|++++.++...... ..|+++++.+|..+
T Consensus 237 -----~~~~~pedvA~~v~~l~s~~~~~----------~tG~~i~vdgG~~~ 273 (280)
T 3nrc_A 237 -----KKNVDIMEVGNTVAFLCSDMATG----------ITGEVVHVDAGYHC 273 (280)
T ss_dssp -----CSCCCHHHHHHHHHHTTSGGGTT----------CCSCEEEESTTGGG
T ss_pred -----CCCCCHHHHHHHHHHHhCcccCC----------cCCcEEEECCCccc
Confidence 12678999999999988765432 34589999987643
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=208.38 Aligned_cols=231 Identities=12% Similarity=0.047 Sum_probs=166.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEe-CCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLD-NFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
....++|+||||||+|+||++++++|+++|++|++++ |+.+........... ...++.++.+|++|.++++++++.
T Consensus 8 ~~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~ 84 (256)
T 3ezl_A 8 HMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKA---LGFDFYASEGNVGDWDSTKQAFDK 84 (256)
T ss_dssp -----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh---cCCeeEEEecCCCCHHHHHHHHHH
Confidence 4457889999999999999999999999999999998 444433332222221 235789999999999999998886
Q ss_pred c-----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCC
Q 042406 153 V-----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
+ ++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+..
T Consensus 85 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~------- 156 (256)
T 3ezl_A 85 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWG-RIINISSVNGQKG------- 156 (256)
T ss_dssp HHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCCCGGGS-------
T ss_pred HHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcchhhccC-------
Confidence 5 6899999999865321 22344679999999987776665 445544 8999999776542
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++.... ..+.....+....+.
T Consensus 157 -----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~~~----------- 218 (256)
T 3ezl_A 157 -----QFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA--IRPDVLEKIVATIPV----------- 218 (256)
T ss_dssp -----CSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT--SCHHHHHHHHHHSTT-----------
T ss_pred -----CCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccc--cCHHHHHHHHhcCCC-----------
Confidence 1456889999999999999998774 8999999999998863321 112333333332221
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
..+.+++|+|++++.++...... ..|+++++.+|..+
T Consensus 219 -~~~~~~~dva~~~~~l~s~~~~~----------~tG~~i~vdgG~~~ 255 (256)
T 3ezl_A 219 -RRLGSPDEIGSIVAWLASEESGF----------STGADFSLNGGLHM 255 (256)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTSCC
T ss_pred -CCCcCHHHHHHHHHHHhCCcccC----------CcCcEEEECCCEeC
Confidence 23778999999999888655432 44589999987643
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-25 Score=205.06 Aligned_cols=234 Identities=12% Similarity=0.081 Sum_probs=169.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|++|||||+|+||++++++|+++|++|++++|+.+............ ....++.++.+|++|.++++++++.+
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQR-FPGARLFASVCDVLDALQVRAFAEACE 82 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-STTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-cCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999765544433332221 22345899999999999999988765
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.. .+. .+||++||...+..
T Consensus 83 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~--------- 152 (265)
T 3lf2_A 83 RTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRAD-AAIVCVNSLLASQP--------- 152 (265)
T ss_dssp HHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-EEEEEEEEGGGTSC---------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-eEEEEECCcccCCC---------
Confidence 7899999999864422 2333467899999999999888754 332 38999999777542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC--------CCcHHHHHHHHHcCCceeEEec
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP--------DMAYFFFTRDIIRGKRITVYEA 290 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 290 (424)
......|++||.+.+.+++.++.++ |+++++|+||.|.+|.... ......+...+......+
T Consensus 153 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---- 225 (265)
T 3lf2_A 153 ---EPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIP---- 225 (265)
T ss_dssp ---CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTTCT----
T ss_pred ---CCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccCCC----
Confidence 1345789999999999999999875 8999999999998762110 000111111111111111
Q ss_pred CCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 291 PDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 291 ~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+..++|+|++++.++...... ..|+++++.+|.
T Consensus 226 ------~~r~~~pedvA~~v~fL~s~~~~~----------itG~~i~vdGG~ 261 (265)
T 3lf2_A 226 ------LGRLGKPIEAARAILFLASPLSAY----------TTGSHIDVSGGL 261 (265)
T ss_dssp ------TCSCBCHHHHHHHHHHHHSGGGTT----------CCSEEEEESSSC
T ss_pred ------cCCCcCHHHHHHHHHHHhCchhcC----------cCCCEEEECCCC
Confidence 123778999999999988765432 445899998875
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-26 Score=210.60 Aligned_cols=224 Identities=14% Similarity=0.131 Sum_probs=165.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||+++++.|+++|++|++++|+.+........ . ..++.++.+|++|.++++++++.+
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~-----~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAAS-----I-GKKARAIAADISDPGSVKALFAEIQA 76 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-----H-CTTEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-----h-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999975433322211 1 457899999999999999998865
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.+++++ +++.+...+||++||...+...
T Consensus 77 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 147 (247)
T 3rwb_A 77 LTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGT--------- 147 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTC---------
T ss_pred HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCC---------
Confidence 6899999999864322 2233467999999999888887 5555533499999997766421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC--CCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRP--DMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.+...|++||++.+.+++.++.+ .|+++++|+||.|.++.... ......+.... .+ .
T Consensus 148 ---~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~---~~------------~ 209 (247)
T 3rwb_A 148 ---PNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML---QA------------M 209 (247)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH---SS------------S
T ss_pred ---CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc---cc------------c
Confidence 34578999999999999999887 48999999999998763211 00000111100 11 1
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+...+|+|++++.++...... ..|+++++.+|.
T Consensus 210 ~r~~~pedva~~v~~L~s~~~~~----------itG~~i~vdGG~ 244 (247)
T 3rwb_A 210 KGKGQPEHIADVVSFLASDDARW----------ITGQTLNVDAGM 244 (247)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred CCCcCHHHHHHHHHHHhCccccC----------CCCCEEEECCCc
Confidence 22567999999999988765432 445899998874
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.1e-25 Score=209.99 Aligned_cols=242 Identities=11% Similarity=0.093 Sum_probs=168.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch--------hhhHHHHHhh-hhccCCeEEEEccCCCHH
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY--------ETSLKKARKG-LLERAGVFVIDADINDKS 144 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~ 144 (424)
+.++++|++|||||+|+||+++++.|+++|++|++++|+.+.. .......... .....++.++.+|++|.+
T Consensus 41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 120 (317)
T 3oec_A 41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLA 120 (317)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 3457899999999999999999999999999999999863211 1111111111 112457899999999999
Q ss_pred HHHHHhhcc-----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccC
Q 042406 145 LLDKIFNVV-----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYG 211 (424)
Q Consensus 145 ~v~~~~~~~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg 211 (424)
+++++++.+ ++|+||||||+..... ..++.+..+++|+.|+.++++++.. .+...+||++||...+.
T Consensus 121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~ 200 (317)
T 3oec_A 121 SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR 200 (317)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC
Confidence 999998865 7899999999865322 2334467899999999998887743 33234899999987764
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCc----
Q 042406 212 VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKR---- 284 (424)
Q Consensus 212 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~---- 284 (424)
.. .....|++||++.+.+++.++.++ |+++++|+||.|+++..... .+...+.....
T Consensus 201 ~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~----~~~~~~~~~~~~~~~ 264 (317)
T 3oec_A 201 GA------------PGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNE----KLLKMFLPHLENPTR 264 (317)
T ss_dssp CC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCH----HHHHHHCTTCSSCCH
T ss_pred CC------------CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccch----hhhhhhhhhccccch
Confidence 21 345789999999999999999875 89999999999998732110 01111100000
Q ss_pred ---eeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 285 ---ITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 285 ---~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
...+. ........+++++|+|++++.++...... ..|+++++.+|..
T Consensus 265 ~~~~~~~~--~~~~~p~~~~~pedvA~av~fL~s~~a~~----------itG~~i~vdGG~~ 314 (317)
T 3oec_A 265 EDAAELFS--QLTLLPIPWVEPEDVSNAVAWLASDEARY----------IHGAAIPVDGGQL 314 (317)
T ss_dssp HHHHHHHT--TTCSSSSSSBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTGG
T ss_pred hHHHHHHh--hhccCCCCCCCHHHHHHHHHHHcCCcccC----------CCCCEEEECcchh
Confidence 00000 00111145889999999999888665432 4458999998753
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=209.34 Aligned_cols=216 Identities=16% Similarity=0.116 Sum_probs=162.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|++|||||+|+||++++++|+++|++|++++|+.+. ..++.++.+|++|.++++++++.+
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--------------~~~~~~~~~Dl~~~~~v~~~~~~~~~ 70 (264)
T 2dtx_A 5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG--------------EAKYDHIECDVTNPDQVKASIDHIFK 70 (264)
T ss_dssp GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC--------------SCSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc--------------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999996542 246889999999999999988754
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.+ .+. ++||++||...+...
T Consensus 71 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 140 (264)
T 2dtx_A 71 EYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRD-PSIVNISSVQASIIT--------- 140 (264)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-CEEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEECCchhccCC---------
Confidence 6799999999854321 2334567999999998888887754 333 499999998876421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCCCcH-------H----HHHHHHHcCCceeEEe
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIYG--LSITGLRFFTVYGPWGRPDMAY-------F----FFTRDIIRGKRITVYE 289 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--i~~~~vrp~~v~G~~~~~~~~~-------~----~~~~~~~~~~~~~~~~ 289 (424)
.+...|+.||++.+.+++.++.+++ +++++|+||.+.++.... .. . .....+...
T Consensus 141 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------- 208 (264)
T 2dtx_A 141 ---KNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRK--AAELEVGSDPMRIEKKISEWGHE------- 208 (264)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHH--HHHHHHCSCHHHHHHHHHHHHHH-------
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhh--hhhcccccCchhhHHHHHHHHhc-------
Confidence 3457899999999999999998765 999999999998762110 00 0 001111110
Q ss_pred cCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 290 APDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 290 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.....+++++|+|++++.++...... ..|+++++.+|.
T Consensus 209 -----~p~~~~~~p~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~ 246 (264)
T 2dtx_A 209 -----HPMQRIGKPQEVASAVAFLASREASF----------ITGTCLYVDGGL 246 (264)
T ss_dssp -----STTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCchhcC----------CCCcEEEECCCc
Confidence 11234889999999999988764322 344899998874
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=205.73 Aligned_cols=226 Identities=12% Similarity=0.076 Sum_probs=166.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC-CchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN-NYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.+.+|+|+||||+|+||++++++|+++|++|+++++.. +.......... ....++.++.+|++|.++++++++.+
T Consensus 23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (267)
T 4iiu_A 23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIV---ANGGNGRLLSFDVANREQCREVLEHEI 99 (267)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHH---hcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999999998776543 22222222211 12467899999999999999988865
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH-----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK-----SSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~-----~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++. +.+. .+||++||...+...
T Consensus 100 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 171 (267)
T 4iiu_A 100 AQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQG-GRIITLSSVSGVMGN------- 171 (267)
T ss_dssp HHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC-EEEEEECCHHHHHCC-------
T ss_pred HHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-cEEEEEcchHhccCC-------
Confidence 6899999999865322 233456799999999999988763 3333 499999997665321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.+...|+.||++.+.+++.++.++ |+++++|+||.|.++..... ......+....+.
T Consensus 172 -----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~p~------------ 231 (267)
T 4iiu_A 172 -----RGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME---ESALKEAMSMIPM------------ 231 (267)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC---HHHHHHHHHTCTT------------
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc---HHHHHHHHhcCCC------------
Confidence 456789999999999999998775 89999999999999865432 2333444433322
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 232 ~~~~~~edva~~~~~L~s~~~~~----------itG~~i~vdGG~ 266 (267)
T 4iiu_A 232 KRMGQAEEVAGLASYLMSDIAGY----------VTRQVISINGGM 266 (267)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred CCCcCHHHHHHHHHHHhCCcccC----------ccCCEEEeCCCc
Confidence 23778999999999988765432 445899998763
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=204.47 Aligned_cols=213 Identities=10% Similarity=0.047 Sum_probs=150.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+..+......... ..++.++.+|++|.++++++++.+
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA---GGRIVARSLDARNEDEVTAFLNAADA 80 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT---TCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEEECcCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999877665544433322 457899999999999999998865
Q ss_pred --CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++ ++.+.+ +||++||...+..
T Consensus 81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~----------- 148 (252)
T 3h7a_A 81 HAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQG-KIFFTGATASLRG----------- 148 (252)
T ss_dssp HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEEEEGGGTCC-----------
T ss_pred hCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEECCHHHcCC-----------
Confidence 789999999986532 122334678999999998887766 444443 8999999776532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcE-EEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSI-TGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~-~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
......|++||++.+.+++.++.++ |+++ ++|+||.|.++..... ..... ..+ .......
T Consensus 149 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~------~~~~~-----~~~---~~~~~~~- 212 (252)
T 3h7a_A 149 -GSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRER------REQMF-----GKD---ALANPDL- 212 (252)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-----------------------------------------
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhcc------chhhh-----hhh---hhcCCcc-
Confidence 1345789999999999999998775 8999 8999999987743211 00000 000 0111223
Q ss_pred cccHHHHHHHHHHHhhhccc
Q 042406 300 FTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~ 319 (424)
+.+.+|+|++++.++..+..
T Consensus 213 ~~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 213 LMPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp -CCHHHHHHHHHHHHHCCGG
T ss_pred CCCHHHHHHHHHHHHhCchh
Confidence 88999999999999986553
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=208.38 Aligned_cols=225 Identities=13% Similarity=0.091 Sum_probs=160.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+++++|++|||||+|+||++++++|+++|++|++++|..+.. ... ...++.++.+|++|.++++++++..
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~-------~~~--~~~~~~~~~~D~~~~~~v~~~~~~~~ 75 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV-------VAD--LGDRARFAAADVTDEAAVASALDLAE 75 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHH-------HHH--TCTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHH-------HHh--cCCceEEEECCCCCHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999943211 111 1457899999999999999888754
Q ss_pred ---CccEEEEcccccCch--------hhccChHHHHHHHHHHHHHHHHHHHhcC-----------CCCeEEEecCCcccC
Q 042406 154 ---AFTHVMHLAAQAGVR--------YAMQNPNSYVESNIAGFVNLLETCKSSD-----------PQPAIVWASSSSVYG 211 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~--------~~~~~~~~~~~~N~~g~~~ll~a~~~~~-----------~~~~~v~~SS~~vyg 211 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.... ...+||++||...+.
T Consensus 76 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 155 (257)
T 3tl3_A 76 TMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD 155 (257)
T ss_dssp HHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C
T ss_pred HhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC
Confidence 679999999985432 2233456799999999999988876531 223899999987763
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEE
Q 042406 212 VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVY 288 (424)
Q Consensus 212 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (424)
.. .+...|++||++.+.+++.++.++ |+++++|+||.|.++.... ........+....+.
T Consensus 156 ~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~--- 218 (257)
T 3tl3_A 156 GQ------------IGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLAS--LPEEARASLGKQVPH--- 218 (257)
T ss_dssp CH------------HHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC-----CHHHHHHHHHTSSS---
T ss_pred CC------------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhh--ccHHHHHHHHhcCCC---
Confidence 21 234789999999999999998774 8999999999999875432 112222223222211
Q ss_pred ecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 289 EAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 289 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
...+.+++|+|++++.++.... ..|+++++.+|..++
T Consensus 219 --------~~r~~~p~dva~~v~~l~s~~~------------itG~~i~vdGG~~~~ 255 (257)
T 3tl3_A 219 --------PSRLGNPDEYGALAVHIIENPM------------LNGEVIRLDGAIRMA 255 (257)
T ss_dssp --------SCSCBCHHHHHHHHHHHHHCTT------------CCSCEEEESTTC---
T ss_pred --------CCCccCHHHHHHHHHHHhcCCC------------CCCCEEEECCCccCC
Confidence 0237889999999999987522 445899999886544
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=209.21 Aligned_cols=231 Identities=12% Similarity=0.085 Sum_probs=169.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.+++||+++||||+++||+++++.|+++|++|++.+|+.+...+...+... ...++.++++|++|+++++++++.+
T Consensus 5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (255)
T 4g81_D 5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTR---KGYDAHGVAFDVTDELAIEAAFSKLD 81 (255)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH---TTCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999977655554443332 2457899999999999999888766
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|++|||||+..... ..++.+..+++|+.|+..+.+++. +.+...+||++||...+...
T Consensus 82 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~-------- 153 (255)
T 4g81_D 82 AEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAAR-------- 153 (255)
T ss_dssp HTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBC--------
T ss_pred HHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCC--------
Confidence 6899999999865432 233446799999999888776553 32223499999997765421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.....|++||.+...+.+.++.++ ||++++|.||.|..|.......-..+...+....|+..
T Consensus 154 ----~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R----------- 218 (255)
T 4g81_D 154 ----PTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQR----------- 218 (255)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTTCS-----------
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCCCC-----------
Confidence 345789999999999999999875 89999999999987632110000122222333222211
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+...+|+|.+++.++...... ..|+++.|.+|-
T Consensus 219 -~g~pediA~~v~fL~S~~a~~----------iTG~~i~VDGG~ 251 (255)
T 4g81_D 219 -WGRPEELIGTAIFLSSKASDY----------INGQIIYVDGGW 251 (255)
T ss_dssp -CBCGGGGHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred -CcCHHHHHHHHHHHhCchhCC----------CcCCEEEECCCe
Confidence 456789999999888655432 455899998763
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=207.64 Aligned_cols=230 Identities=12% Similarity=0.055 Sum_probs=166.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+++++|+|+||||+|+||++++++|+++|++|++++|+............. ....++.++.+|++|.+++.++++..
T Consensus 24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~ 101 (271)
T 4iin_A 24 AMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELE--EKGYKAAVIKFDAASESDFIEAIQTI 101 (271)
T ss_dssp CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH--HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH--hcCCceEEEECCCCCHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999965433222222111 12357899999999999999988865
Q ss_pred -----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++. +.+.+ +||++||...+..
T Consensus 102 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~-------- 172 (271)
T 4iin_A 102 VQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFG-SVVNVASIIGERG-------- 172 (271)
T ss_dssp HHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHHC--------
T ss_pred HHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCC-EEEEEechhhcCC--------
Confidence 6899999999865422 223446789999999988777664 33443 8999999766532
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
..+...|++||++.+.+++.++.+ .|+++++|+||.|.++.... +..... ..+ ......
T Consensus 173 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~------~~~~~~-----~~~---~~~~~~ 234 (271)
T 4iin_A 173 ----NMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNAN------LKDELK-----ADY---VKNIPL 234 (271)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC-----------------------C---GGGCTT
T ss_pred ----CCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhh------hcHHHH-----HHH---HhcCCc
Confidence 145688999999999999999877 48999999999998874321 110000 000 011223
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+.+++|+|++++.++...... ..|+++++.+|-
T Consensus 235 ~~~~~p~dvA~~i~~l~s~~~~~----------itG~~i~vdGG~ 269 (271)
T 4iin_A 235 NRLGSAKEVAEAVAFLLSDHSSY----------ITGETLKVNGGL 269 (271)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred CCCcCHHHHHHHHHHHhCCCcCC----------CcCCEEEeCCCe
Confidence 35889999999999998765432 345899998874
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=205.98 Aligned_cols=225 Identities=13% Similarity=0.033 Sum_probs=161.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-eCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGL-DNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
+|+|+||||+|+||++++++|+++|++|+++ +|+.+........... ...++.++.+|++|.++++++++..
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA---YGGQAITFGGDVSKEADVEAMMKTAIDAW 77 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---HTCEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh---cCCcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999995 6754333222211111 1346889999999999999988754
Q ss_pred -CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.+ .+.+ +||++||...+...
T Consensus 78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~----------- 145 (244)
T 1edo_A 78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKG-RIINIASVVGLIGN----------- 145 (244)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHCC-----------
T ss_pred CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC-EEEEECChhhcCCC-----------
Confidence 679999999986532 12234467899999999998887755 3443 99999997654321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
.+...|+.||.+.+.+++.++.++ |++++++|||.++++..... ...+...+....+ ...++
T Consensus 146 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~------------~~~~~ 210 (244)
T 1edo_A 146 -IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL--GEDMEKKILGTIP------------LGRTG 210 (244)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT--CHHHHHHHHTSCT------------TCSCB
T ss_pred -CCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhc--ChHHHHHHhhcCC------------CCCCC
Confidence 345789999999999999998774 89999999999998743211 1122222222211 12488
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 302 YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+++|+|++++.++..+.... ..|++|++.+|.
T Consensus 211 ~~~dva~~~~~l~~~~~~~~---------~~G~~~~v~gG~ 242 (244)
T 1edo_A 211 QPENVAGLVEFLALSPAASY---------ITGQAFTIDGGI 242 (244)
T ss_dssp CHHHHHHHHHHHHHCSGGGG---------CCSCEEEESTTT
T ss_pred CHHHHHHHHHHHhCCCccCC---------cCCCEEEeCCCc
Confidence 99999999999885432211 334899998874
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=206.94 Aligned_cols=239 Identities=13% Similarity=0.087 Sum_probs=170.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++|++|||||+|+||++++++|+++|++|++++|+.+............ .....+.++.+|++|.++++++++..
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~g 84 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQ-YPDAILQPVVADLGTEQGCQDVIEKYP 84 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-CTTCEEEEEECCTTSHHHHHHHHHHCC
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-CCCceEEEEecCCCCHHHHHHHHHhcC
Confidence 3578999999999999999999999999999999999765544433333221 12346789999999999999999876
Q ss_pred CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||....... .++.+..+++|+.|+.++++++ ++.+.+ +||++||...+.. .
T Consensus 85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~------------~ 151 (267)
T 3t4x_A 85 KVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEG-RVIFIASEAAIMP------------S 151 (267)
T ss_dssp CCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEE-EEEEECCGGGTSC------------C
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC-EEEEEcchhhccC------------C
Confidence 68999999998654322 2233567999999977776655 444443 9999999877642 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC---------CCCcHHHHHHHHHcCCceeEEecCCC
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGR---------PDMAYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.+.++... ................. .
T Consensus 152 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 223 (267)
T 3t4x_A 152 QEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENR--------P 223 (267)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHC--------T
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccC--------C
Confidence 456889999999999999999875 699999999999876210 00000111111111000 0
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
......+.+++|+|++++.++...... ..|+++++.+|...+
T Consensus 224 ~~~~~r~~~pedvA~~v~fL~s~~~~~----------itG~~i~vdGG~~~s 265 (267)
T 3t4x_A 224 TSIIQRLIRPEEIAHLVTFLSSPLSSA----------INGSALRIDGGLVRS 265 (267)
T ss_dssp TCSSCSCBCTHHHHHHHHHHHSGGGTT----------CCSCEEEESTTCSCS
T ss_pred cccccCccCHHHHHHHHHHHcCccccC----------ccCCeEEECCCcccc
Confidence 011235889999999999988765432 455899999987554
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=207.83 Aligned_cols=229 Identities=15% Similarity=0.041 Sum_probs=167.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+|+||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 107 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKT---YGVHSKAYKCNISDPKSVEETISQQEK 107 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHH---HCSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcceEEEeecCCHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999987654332222111 1357899999999999999988763
Q ss_pred ---CccEEEEcccccCc------hhhccChHHHHHHHHHH----HHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV------RYAMQNPNSYVESNIAG----FVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g----~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||.... ....++.+..+++|+.| +.++++.+++.+.+ +||++||...+...
T Consensus 108 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~~------- 179 (279)
T 3ctm_A 108 DFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKG-SLIITSSISGKIVN------- 179 (279)
T ss_dssp HHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCCTTSCC--------
T ss_pred HhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-eEEEECchHhccCC-------
Confidence 47999999998644 22223346789999999 55677777776654 99999998765321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
...+...|+.||++.|.+++.++.++ + ++++|+||.+.++..... .......+....+ .
T Consensus 180 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~p------------~ 241 (279)
T 3ctm_A 180 ---IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFA--SKDMKAKWWQLTP------------L 241 (279)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSC--CHHHHHHHHHHST------------T
T ss_pred ---CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCcccccccc--ChHHHHHHHHhCC------------c
Confidence 01345789999999999999998874 6 999999999998754311 1122222221111 1
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
..+++++|+|++++.++...... ..|+++++.+|..
T Consensus 242 ~~~~~~~dvA~~~~~l~s~~~~~----------~tG~~i~vdgG~~ 277 (279)
T 3ctm_A 242 GREGLTQELVGGYLYLASNASTF----------TTGSDVVIDGGYT 277 (279)
T ss_dssp CSCBCGGGTHHHHHHHHSGGGTT----------CCSCEEEESTTCC
T ss_pred cCCcCHHHHHHHHHHHhCccccC----------ccCCEEEECCCee
Confidence 23788999999999998765322 3448999998753
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-25 Score=207.31 Aligned_cols=227 Identities=11% Similarity=0.048 Sum_probs=163.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+.......... ...++.++.+|++|.++++++++.+
T Consensus 26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~----~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (276)
T 2b4q_A 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLS----AYGDCQAIPADLSSEAGARRLAQALGE 101 (276)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHT----TSSCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH----hcCceEEEEeeCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999997543332222111 1127889999999999999888754
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHH----hcCC---CCeEEEecCCcccCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCK----SSDP---QPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~---~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++. +.+. .++||++||...+...
T Consensus 102 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~------ 175 (276)
T 2b4q_A 102 LSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAM------ 175 (276)
T ss_dssp HCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCC------
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCC------
Confidence 679999999975432 1223346799999999987777654 3333 1389999998776431
Q ss_pred CCCCCCCCCC-hHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHc--CCceeEEecCCC
Q 042406 220 EKDRTDQPAS-LYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIR--GKRITVYEAPDG 293 (424)
Q Consensus 220 e~~~~~~~~~-~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 293 (424)
.... .|++||++.+.+++.++.++ |+++++|+||.|.++.... ........+.. ..+
T Consensus 176 ------~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~p--------- 238 (276)
T 2b4q_A 176 ------GEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRH--IANDPQALEADSASIP--------- 238 (276)
T ss_dssp ------CCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHH--HHHCHHHHHHHHHTST---------
T ss_pred ------CCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhh--cchhHHHHHHhhcCCC---------
Confidence 2234 89999999999999998774 8999999999999874321 00001111111 111
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 239 ---~~r~~~p~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~ 274 (276)
T 2b4q_A 239 ---MGRWGRPEEMAALAISLAGTAGAY----------MTGNVIPIDGGF 274 (276)
T ss_dssp ---TSSCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred ---CCCcCCHHHHHHHHHHHhCccccC----------CCCCEEEeCCCc
Confidence 123789999999999998765322 344899998874
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.4e-25 Score=205.63 Aligned_cols=231 Identities=11% Similarity=0.026 Sum_probs=166.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhh-HHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETS-LKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
..+++|+++||||+|+||++++++|+++|++|++++|+.+..... ..... ....++.++.+|++|.+++.++++.+
T Consensus 25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~ 101 (283)
T 1g0o_A 25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK---KNGSDAACVKANVGVVEDIVRMFEEA 101 (283)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHH---HhCCCeEEEEcCCCCHHHHHHHHHHH
Confidence 346889999999999999999999999999999999976432111 11111 12357899999999999998888754
Q ss_pred -----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS--DPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~--~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.+. +. .+||++||...+...
T Consensus 102 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 171 (283)
T 1g0o_A 102 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSITGQAKA--------- 171 (283)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCGGGTCSS---------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEechhhccCC---------
Confidence 6799999999864321 23344678999999999999998876 33 499999997765321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC-------C--CcHHHHHHHHHc--CCceeEE
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP-------D--MAYFFFTRDIIR--GKRITVY 288 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~-------~--~~~~~~~~~~~~--~~~~~~~ 288 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++.... . .........+.. ..+
T Consensus 172 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---- 245 (283)
T 1g0o_A 172 --VPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSP---- 245 (283)
T ss_dssp --CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCT----
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCCC----
Confidence 0235789999999999999998764 8999999999998862110 0 000111111111 111
Q ss_pred ecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 289 EAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 289 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+.+.+|+|++++.++...... ..|+++++.+|.
T Consensus 246 --------~~r~~~p~dvA~~v~~l~s~~~~~----------itG~~i~vdgG~ 281 (283)
T 1g0o_A 246 --------LRRVGLPIDIARVVCFLASNDGGW----------VTGKVIGIDGGA 281 (283)
T ss_dssp --------TCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred --------CCCCcCHHHHHHHHHHHhCccccC----------cCCCEEEeCCCc
Confidence 123788999999999998765422 344899998874
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=207.74 Aligned_cols=232 Identities=11% Similarity=-0.001 Sum_probs=166.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|+++++............ ......++.++.+|++|.++++++++.+
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 99 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMH--ERDAGRDFKAYAVDVADFESCERCAEKVLA 99 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHH--HHTTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHH--HHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999996443221111111 1113457999999999999999988865
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.. .+.+ +||++||...+..
T Consensus 100 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~---------- 168 (269)
T 3gk3_A 100 DFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFG-RIVNIGSVNGSRG---------- 168 (269)
T ss_dssp HHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHHC----------
T ss_pred HcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEeCChhhccC----------
Confidence 6899999999865322 2233467899999999888887643 4433 8999999766532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++..... ......... ........
T Consensus 169 --~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~------~~~~~~~~~-------~~~~~~~~ 233 (269)
T 3gk3_A 169 --AFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAV------PQDVLEAKI-------LPQIPVGR 233 (269)
T ss_dssp --CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-------------CCS-------GGGCTTSS
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhh------chhHHHHHh-------hhcCCcCC
Confidence 1345789999999999999998775 89999999999998754321 011111000 01112234
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
+.+++|+|++++.++...... ..|+++++.+|..++
T Consensus 234 ~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdgG~~~s 269 (269)
T 3gk3_A 234 LGRPDEVAALIAFLCSDDAGF----------VTGADLAINGGMHMS 269 (269)
T ss_dssp CBCHHHHHHHHHHHTSTTCTT----------CCSCEEEESTTSCCC
T ss_pred ccCHHHHHHHHHHHhCCCcCC----------eeCcEEEECCCEeCc
Confidence 778999999999988765432 445899999986543
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=212.47 Aligned_cols=229 Identities=16% Similarity=0.063 Sum_probs=154.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|+||||||+||||++++++|+++|++|++++|+.+..+......... .....+.++.+|++|.+++.++++.+
T Consensus 4 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAE-GSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp CCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999766544443333221 12237899999999999999998865
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcC---------CCCeEEEecCCcccCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSD---------PQPAIVWASSSSVYGVNKKV 216 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~---------~~~~~v~~SS~~vyg~~~~~ 216 (424)
++|+||||||+..... ..++.+..+++|+.|+.++++++.... ...+||++||...+...
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~--- 159 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAA--- 159 (319)
T ss_dssp HHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCC---
T ss_pred HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCC---
Confidence 6899999999854322 223346799999999999888775432 12389999998776531
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCC
Q 042406 217 PFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 217 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
.....|++||.+.+.+++.++.++ |+++++|+||.|.++...........+............. .-
T Consensus 160 ---------~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 228 (319)
T 3ioy_A 160 ---------GSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVE--RL 228 (319)
T ss_dssp ---------SSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-------------------------------
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCchhhcccccchhHHHHH--HH
Confidence 345789999999988888887654 8999999999999875432111111111111000000000 00
Q ss_pred CccccccccHHHHHHHHHHHhhhcc
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
.......++++|+|++++.+++...
T Consensus 229 ~~~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 229 AGVHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp CCGGGSSBCHHHHHHHHHHHHHTTC
T ss_pred HHhhhcCCCHHHHHHHHHHHHHcCC
Confidence 1111123899999999999998753
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.93 E-value=7.7e-25 Score=206.05 Aligned_cols=229 Identities=14% Similarity=0.058 Sum_probs=166.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC-CchhhhHHHHHhhhhccCCeEEEEccCCC----HHHHHHH
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN-NYYETSLKKARKGLLERAGVFVIDADIND----KSLLDKI 149 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~v~~~ 149 (424)
.++++|+++||||+|+||++++++|+++|++|++++|+. +........... ....++.++.+|++| .++++++
T Consensus 19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~~~~~~~~~v~~~ 96 (288)
T 2x9g_A 19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNK--ERSNTAVVCQADLTNSNVLPASCEEI 96 (288)
T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHH--HSTTCEEEEECCCSCSTTHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHh--hcCCceEEEEeecCCccCCHHHHHHH
Confidence 457889999999999999999999999999999999976 443332222211 123578999999999 9999888
Q ss_pred hhcc-----CccEEEEcccccCch--------------hhccChHHHHHHHHHHHHHHHHHHHhcCC---------CCeE
Q 042406 150 FNVV-----AFTHVMHLAAQAGVR--------------YAMQNPNSYVESNIAGFVNLLETCKSSDP---------QPAI 201 (424)
Q Consensus 150 ~~~~-----~~d~vi~~Ag~~~~~--------------~~~~~~~~~~~~N~~g~~~ll~a~~~~~~---------~~~~ 201 (424)
++.+ ++|+||||||..... ...++.+..+++|+.|+.++++++..... ..+|
T Consensus 97 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~i 176 (288)
T 2x9g_A 97 INSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSI 176 (288)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEE
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEE
Confidence 8754 679999999985432 12223457899999999999888754321 2389
Q ss_pred EEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHH
Q 042406 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRD 278 (424)
Q Consensus 202 v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~ 278 (424)
|++||...+.. ..+...|++||++.+.+++.++.++ |+++++|+||.|+++. . . . ......
T Consensus 177 v~isS~~~~~~------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~-~-~-~~~~~~ 240 (288)
T 2x9g_A 177 VNLCDAMVDQP------------CMAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-A-M-G-EEEKDK 240 (288)
T ss_dssp EEECCTTTTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-T-S-C-HHHHHH
T ss_pred EEEecccccCC------------CCCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-c-c-C-hHHHHH
Confidence 99999877642 1345789999999999999998775 8999999999999986 2 1 1 122222
Q ss_pred HHcCCceeEEecCCCCcccccc-ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 279 IIRGKRITVYEAPDGASVARDF-TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~-i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
+....+. ..+ ...+|+|++++.++...... ..|+++++.+|..
T Consensus 241 ~~~~~p~------------~r~~~~pedvA~~v~~l~s~~~~~----------itG~~i~vdGG~~ 284 (288)
T 2x9g_A 241 WRRKVPL------------GRREASAEQIADAVIFLVSGSAQY----------ITGSIIKVDGGLS 284 (288)
T ss_dssp HHHTCTT------------TSSCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred HHhhCCC------------CCCCCCHHHHHHHHHHHhCccccC----------ccCCEEEECcchh
Confidence 3222111 114 68999999999998764322 3458999988753
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-26 Score=204.73 Aligned_cols=192 Identities=18% Similarity=0.147 Sum_probs=149.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc-cCccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV-VAFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~-~~~d~v 158 (424)
|+++||||+|+||++++++|+++ +|++++|+.+...... .. .. . .++.+|++|.++++++++. .++|+|
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~----~~-~~--~-~~~~~D~~~~~~~~~~~~~~~~id~v 70 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELA----RE-VG--A-RALPADLADELEAKALLEEAGPLDLL 70 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHH----HH-HT--C-EECCCCTTSHHHHHHHHHHHCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHH----Hh-cc--C-cEEEeeCCCHHHHHHHHHhcCCCCEE
Confidence 67999999999999999999999 9999999643322211 11 11 2 8899999999999999983 145999
Q ss_pred EEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 159 MHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 159 i~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
|||||..... ...++.+..+++|+.++.++++++++.+.+ +||++||...|... .+...|+.+
T Consensus 71 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~sS~~~~~~~------------~~~~~Y~~s 137 (207)
T 2yut_A 71 VHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGA-RAVFFGAYPRYVQV------------PGFAAYAAA 137 (207)
T ss_dssp EECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEE-EEEEECCCHHHHSS------------TTBHHHHHH
T ss_pred EECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCc-EEEEEcChhhccCC------------CCcchHHHH
Confidence 9999976432 233445779999999999999999766554 99999998887521 456789999
Q ss_pred HHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHH
Q 042406 235 KKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311 (424)
Q Consensus 235 K~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 311 (424)
|.+.|.+++.++.+ .|++++++|||.++++... +.+...+.+++++|+|++++
T Consensus 138 K~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~------------------------~~~~~~~~~~~~~dva~~~~ 193 (207)
T 2yut_A 138 KGALEAYLEAARKELLREGVHLVLVRLPAVATGLWA------------------------PLGGPPKGALSPEEAARKVL 193 (207)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG------------------------GGTSCCTTCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc------------------------ccCCCCCCCCCHHHHHHHHH
Confidence 99999999999877 4899999999999987310 01123367999999999999
Q ss_pred HHhhhcc
Q 042406 312 AGLDTAK 318 (424)
Q Consensus 312 ~~~~~~~ 318 (424)
.+++++.
T Consensus 194 ~~~~~~~ 200 (207)
T 2yut_A 194 EGLFREP 200 (207)
T ss_dssp HHHC--C
T ss_pred HHHhCCC
Confidence 9998765
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-26 Score=209.42 Aligned_cols=235 Identities=10% Similarity=0.019 Sum_probs=161.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|++|||||+|+||++++++|+++|++|++++|.....+........-.....++.++.+|++|.++++++++.+
T Consensus 7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999988643322211111111112457899999999999999998865
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.... ...+||++||...+...
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~----------- 155 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYT----------- 155 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHH-----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCC-----------
Confidence 6899999999865432 223345789999999999999987642 12389999998776531
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
.....|++||++.+.+++.++.++ |+++++|+||.|..+..... ........+ ........+.
T Consensus 156 -~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~----------~~~~~~~~~---~~~~~~~r~~ 221 (262)
T 3ksu_A 156 -GFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQ----------ETKESTAFH---KSQAMGNQLT 221 (262)
T ss_dssp -CCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTC----------C---------------CCCCSC
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc----------CchHHHHHH---HhcCcccCCC
Confidence 335789999999999999999886 89999999999976521100 000000000 0111223477
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 302 YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
..+|+|++++.++.. ... ..|+++++.+|....
T Consensus 222 ~pedvA~~v~~L~s~-~~~----------itG~~i~vdGg~~~~ 254 (262)
T 3ksu_A 222 KIEDIAPIIKFLTTD-GWW----------INGQTIFANGGYTTR 254 (262)
T ss_dssp CGGGTHHHHHHHHTT-TTT----------CCSCEEEESTTCCCC
T ss_pred CHHHHHHHHHHHcCC-CCC----------ccCCEEEECCCccCC
Confidence 889999999998876 321 345899999876444
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=207.91 Aligned_cols=212 Identities=15% Similarity=0.123 Sum_probs=148.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+.+|++|||||+|+||++++++|+++|++|++++|+.+......... ..++.++.+|++|.++++++++.+
T Consensus 24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~~~~ 97 (272)
T 4dyv_A 24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI------GDDALCVPTDVTDPDSVRALFTATV 97 (272)
T ss_dssp ----CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH------TSCCEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh------CCCeEEEEecCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999754333222211 257899999999999999998865
Q ss_pred ----CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHHHh----cCC-CCeEEEecCCcccCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETCKS----SDP-QPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~-~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.. .+. ..+||++||...+..
T Consensus 98 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~------- 170 (272)
T 4dyv_A 98 EKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSP------- 170 (272)
T ss_dssp HHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSC-------
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCC-------
Confidence 789999999985431 12233467999999998887776643 321 238999999877642
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++.... + ..+..... ....
T Consensus 171 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~------~----~~~~~~~~-----~~~~ 230 (272)
T 4dyv_A 171 -----RPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQK------M----KAGVPQAD-----LSIK 230 (272)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC----------------------------------
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhh------h----cccchhhh-----hccc
Confidence 1456789999999999999998774 8999999999999874321 1 01000000 0111
Q ss_pred ccccccHHHHHHHHHHHhhhccc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
...+.+++|+|++++.++..+..
T Consensus 231 ~~~~~~pedvA~~v~fL~s~~~~ 253 (272)
T 4dyv_A 231 VEPVMDVAHVASAVVYMASLPLD 253 (272)
T ss_dssp -----CHHHHHHHHHHHHHSCTT
T ss_pred ccCCCCHHHHHHHHHHHhCCCCc
Confidence 22378999999999999987764
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=203.70 Aligned_cols=228 Identities=13% Similarity=0.083 Sum_probs=167.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.+++||++|||||+++||+++++.|+++|++|++.+|+.+..+....+ . ..++.++++|++|+++++++++.+
T Consensus 25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~-----~-g~~~~~~~~Dv~~~~~v~~~~~~~~ 98 (273)
T 4fgs_A 25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAE-----I-GGGAVGIQADSANLAELDRLYEKVK 98 (273)
T ss_dssp CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----H-CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-----c-CCCeEEEEecCCCHHHHHHHHHHHH
Confidence 358999999999999999999999999999999999976544433222 1 357889999999999999988776
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|++|||||...... ..++.+..+++|+.|+.++.+++..... ..+||++||...+...
T Consensus 99 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~----------- 167 (273)
T 4fgs_A 99 AEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGT----------- 167 (273)
T ss_dssp HHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCC-----------
T ss_pred HHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCC-----------
Confidence 7899999999854422 2334467999999999999888765421 1389999997664321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC---C--cHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD---M--AYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.....|++||.+...+.+.++.++ ||++++|.||.|..|..... . ....+.+.+...-|+..
T Consensus 168 -~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~PlgR--------- 237 (273)
T 4fgs_A 168 -PAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGR--------- 237 (273)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTSS---------
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCCC---------
Confidence 345789999999999999999886 79999999999988743211 0 01123333333333211
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+...+|+|.+++.++...... ..|+++.|.+|.
T Consensus 238 ---~g~peeiA~~v~FLaSd~a~~----------iTG~~i~VDGG~ 270 (273)
T 4fgs_A 238 ---VGRAEEVAAAALFLASDDSSF----------VTGAELFVDGGS 270 (273)
T ss_dssp ---CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred ---CcCHHHHHHHHHHHhCchhcC----------ccCCeEeECcCh
Confidence 556899999999888765533 455899998764
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=199.57 Aligned_cols=232 Identities=11% Similarity=-0.021 Sum_probs=170.7
Q ss_pred CCCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 75 RSTRGLTVLVTGAAG--FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 75 ~~~~~~~vlItGg~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
.+++||+++||||+| +||+++++.|+++|++|++.+|+.+..++..... +.....++.++++|++|+++++++++.
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~--~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLL--EQLNQPEAHLYQIDVQSDEEVINGFEQ 79 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH--GGGTCSSCEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH--HhcCCCcEEEEEccCCCHHHHHHHHHH
Confidence 468999999999876 9999999999999999999999866544433222 223445789999999999999888876
Q ss_pred c-----CccEEEEcccccCchhh-----cc---ChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCC
Q 042406 153 V-----AFTHVMHLAAQAGVRYA-----MQ---NPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~~~~-----~~---~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~ 218 (424)
+ ++|++|||||....... +. +....+++|+.++..+.+++..... ..+||++||.+....
T Consensus 80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~------ 153 (256)
T 4fs3_A 80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFA------ 153 (256)
T ss_dssp HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSC------
T ss_pred HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccC------
Confidence 5 68999999998653211 11 2235678999998888877765422 238999999665421
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
......|++||.+.+.+++.++.++ ||++++|.||.|-.|..........+.+.+....|+..
T Consensus 154 ------~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R-------- 219 (256)
T 4fs3_A 154 ------VQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPLKR-------- 219 (256)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSS--------
T ss_pred ------cccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCCCC--------
Confidence 1345789999999999999999775 89999999999988754332223445555554433321
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+...+|+|.+++.++...... ..|+++.|.+|-
T Consensus 220 ----~g~peevA~~v~fL~Sd~a~~----------iTG~~i~VDGG~ 252 (256)
T 4fs3_A 220 ----NVDQVEVGKTAAYLLSDLSSG----------VTGENIHVDSGF 252 (256)
T ss_dssp ----CCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred ----CcCHHHHHHHHHHHhCchhcC----------ccCCEEEECcCH
Confidence 556899999999888665432 455899988763
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=205.28 Aligned_cols=212 Identities=16% Similarity=0.145 Sum_probs=152.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+.+|++|||||+|+||+++++.|+++|++|++++|+.+..+........ ....+.++.+|++|.++++++++.+
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 78 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRD---AGGTALAQVLDVTDRHSVAAFAQAAVDT 78 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999976544443332222 2356889999999999999988765
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++. +.+.+ +||++||...+...
T Consensus 79 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~IV~isS~~~~~~~---------- 147 (264)
T 3tfo_A 79 WGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSG-QIINIGSIGALSVV---------- 147 (264)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTCCC----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCe-EEEEEcCHHHcccC----------
Confidence 6899999999865322 223346789999999988777654 34443 89999998776421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY-GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~-~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.....|++||++.+.+++.++.++ |+++++|+||.|.++.... .......... ......+..
T Consensus 148 --~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~----------~~~~~~~~~~-----~~~~~~~~~ 210 (264)
T 3tfo_A 148 --PTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGT----------ITHEETMAAM-----DTYRAIALQ 210 (264)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC--------------------------------------CCC
T ss_pred --CCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCccccc----------ccchhHHHHH-----HhhhccCCC
Confidence 345789999999999999998876 8999999999998773321 0000000000 001112578
Q ss_pred HHHHHHHHHHHhhhccc
Q 042406 303 IDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~ 319 (424)
.+|+|++++.++..+..
T Consensus 211 pedvA~~v~~l~s~~~~ 227 (264)
T 3tfo_A 211 PADIARAVRQVIEAPQS 227 (264)
T ss_dssp HHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHhcCCcc
Confidence 99999999999987754
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=202.77 Aligned_cols=218 Identities=15% Similarity=0.106 Sum_probs=159.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+.+|+++||||+|+||++++++|+++|++|++++|+.+.. ..+.++.+|++|.++++++++++
T Consensus 17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--------------~~~~~~~~Dl~d~~~v~~~~~~~~ 82 (253)
T 2nm0_A 17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP--------------EGFLAVKCDITDTEQVEQAYKEIE 82 (253)
T ss_dssp ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC--------------TTSEEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh--------------ccceEEEecCCCHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999965421 23789999999999999888764
Q ss_pred ----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.+ .+.+ +||++||...+...
T Consensus 83 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~~~-------- 153 (253)
T 2nm0_A 83 ETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKG-RVVLISSVVGLLGS-------- 153 (253)
T ss_dssp HHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECCCCCCCCH--------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEECchhhCCCC--------
Confidence 579999999985432 23456678999999999988886643 3443 99999997665311
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.+...|++||.+.+.+++.++.++ |+++++|+||.|.++.... ........+....+ ..
T Consensus 154 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~p------------~~ 215 (253)
T 2nm0_A 154 ----AGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKV--LTDEQRANIVSQVP------------LG 215 (253)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC-----------CHHHHHTTCT------------TC
T ss_pred ----CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhh--cCHHHHHHHHhcCC------------CC
Confidence 234689999999999999998775 7999999999998764321 00001111111111 12
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
.+++.+|+|++++.++..+... ..|+++.+.+|..
T Consensus 216 ~~~~p~dvA~~i~~l~s~~~~~----------~tG~~i~vdGG~~ 250 (253)
T 2nm0_A 216 RYARPEEIAATVRFLASDDASY----------ITGAVIPVDGGLG 250 (253)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred CCcCHHHHHHHHHHHhCccccC----------CcCcEEEECCccc
Confidence 3789999999999988765422 3448999988754
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=9e-25 Score=202.00 Aligned_cols=231 Identities=14% Similarity=0.089 Sum_probs=161.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+++||||+|+||++++++|+++|++|++++|+.+..+........ ...++.++.+|++|.++++++++.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 78 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQ---AGGHAVAVKVDVSDRDQVFAAVEQARKTLG 78 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999999999999975443332222211 1346889999999999999988754
Q ss_pred CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.+ .+..++||++||...+...
T Consensus 79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 146 (256)
T 1geg_A 79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN------------ 146 (256)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC------------
Confidence 6799999999754321 2233457899999999887776643 3312389999997665321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHc-----CCc-eeEEecCCCCcc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIR-----GKR-ITVYEAPDGASV 296 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~ 296 (424)
.+...|++||.+.+.+++.++.++ |+++++|+||.|.++... .+...+.. ... ...+. ....
T Consensus 147 ~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~p 217 (256)
T 1geg_A 147 PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWA------EIDRQVSEAAGKPLGYGTAEFA---KRIT 217 (256)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHH------HHHHHHHHHHTCCTTHHHHHHH---TTCT
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhh------hhhhhccccccCChHHHHHHHH---hcCC
Confidence 345789999999999999998764 899999999999986311 11000000 000 00000 0011
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
...+.+.+|+|++++.++...... ..|+++++.+|..
T Consensus 218 ~~r~~~p~dvA~~v~~l~s~~~~~----------~tG~~i~vdGG~~ 254 (256)
T 1geg_A 218 LGRLSEPEDVAACVSYLASPDSDY----------MTGQSLLIDGGMV 254 (256)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSSSS
T ss_pred CCCCcCHHHHHHHHHHHhCccccC----------CCCCEEEeCCCcc
Confidence 123789999999999988765322 3448999988753
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.6e-25 Score=208.98 Aligned_cols=230 Identities=10% Similarity=-0.030 Sum_probs=166.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEe-CCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH----------
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLD-NFNNYYETSLKKARKGLLERAGVFVIDADINDKS---------- 144 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---------- 144 (424)
.+++|++|||||+|+||+++++.|+++|++|++++ |+.+........... ....++.++.+|++|.+
T Consensus 43 ~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 120 (328)
T 2qhx_A 43 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNA--RRPNSAITVQADLSNVATAPVSGADGS 120 (328)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--HSTTCEEEEECCCSSSCBCC-------
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh--hcCCeEEEEEeeCCCchhccccccccc
Confidence 47889999999999999999999999999999999 865443332222211 12357899999999999
Q ss_pred -------HHHHHhhcc-----CccEEEEcccccCchh----h--------------ccChHHHHHHHHHHHHHHHHHHHh
Q 042406 145 -------LLDKIFNVV-----AFTHVMHLAAQAGVRY----A--------------MQNPNSYVESNIAGFVNLLETCKS 194 (424)
Q Consensus 145 -------~v~~~~~~~-----~~d~vi~~Ag~~~~~~----~--------------~~~~~~~~~~N~~g~~~ll~a~~~ 194 (424)
+++++++.+ ++|+||||||...... . .++.+..+++|+.|+.++++++..
T Consensus 121 ~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 200 (328)
T 2qhx_A 121 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH 200 (328)
T ss_dssp CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888765 6899999999854321 1 233457899999999888887653
Q ss_pred ----cCC-----CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEecccc
Q 042406 195 ----SDP-----QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVY 262 (424)
Q Consensus 195 ----~~~-----~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~ 262 (424)
.+. ..+||++||...+.. ..+...|++||++.+.+++.++.++ |+++++|+||.|.
T Consensus 201 ~m~~~~~~~~~~~g~IV~isS~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~ 268 (328)
T 2qhx_A 201 RVAGTPAKHRGTNYSIINMVDAMTNQP------------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSV 268 (328)
T ss_dssp HHHHSCGGGSCSCEEEEEECCTTTTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBS
T ss_pred HHHhcCCcCCCCCcEEEEECchhhccC------------CCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccc
Confidence 330 238999999877642 1345789999999999999998875 8999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 263 GPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 263 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
++. . . . +.....+....++ . .-+...+|+|++++.++...... ..|+++++.+|.
T Consensus 269 T~~-~-~-~-~~~~~~~~~~~p~-------~----~r~~~pedvA~~v~~l~s~~~~~----------itG~~i~vdGG~ 323 (328)
T 2qhx_A 269 LVD-D-M-P-PAVWEGHRSKVPL-------Y----QRDSSAAEVSDVVIFLCSSKAKY----------ITGTCVKVDGGY 323 (328)
T ss_dssp CCC-C-S-C-HHHHHHHHTTCTT-------T----TSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred CCc-c-c-c-HHHHHHHHhhCCC-------C----CCCCCHHHHHHHHHHHhCccccC----------ccCcEEEECCCc
Confidence 986 2 1 1 2333333322211 0 02678999999999998754322 345899998875
Q ss_pred cc
Q 042406 343 PV 344 (424)
Q Consensus 343 ~~ 344 (424)
.+
T Consensus 324 ~~ 325 (328)
T 2qhx_A 324 SL 325 (328)
T ss_dssp GG
T ss_pred cc
Confidence 43
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-25 Score=203.22 Aligned_cols=224 Identities=13% Similarity=0.042 Sum_probs=162.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+|+++||||+|+||++++++|+++| +.|++.+|+.+....... . . ..++.++.+|++|.++++++++.+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~----~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKE----K-Y-GDRFFYVVGDITEDSVLKQLVNAAVKG 75 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHH----H-H-GGGEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHH----H-h-CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999999985 788889986543322211 1 1 357899999999999999998865
Q ss_pred --CccEEEEcccccCc-h----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGV-R----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~-~----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||.... . ...++.+..+++|+.|+.++++++ ++.+ .+||++||...+..
T Consensus 76 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~~~~~---------- 143 (254)
T 3kzv_A 76 HGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDACNMY---------- 143 (254)
T ss_dssp HSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSCCCCS----------
T ss_pred cCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCchhccC----------
Confidence 78999999998543 1 122334679999999999988877 4444 39999999877642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCCCCCCC-------CcHHHHHHHHHcCCceeEEecCCCC
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY-GLSITGLRFFTVYGPWGRPD-------MAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~i~~~~vrp~~v~G~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..+...|++||++.+.+++.++.++ ++++++|+||.|.++..... .........+....+
T Consensus 144 --~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 211 (254)
T 3kzv_A 144 --FSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKE---------- 211 (254)
T ss_dssp --SCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHT----------
T ss_pred --CCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHh----------
Confidence 1456789999999999999999876 89999999999998754321 001222222222111
Q ss_pred ccccccccHHHHHHHHHHHhhhcc-ccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAK-KSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
...+.+.+|+|++++.++.... .. ..|+.+++.+++..
T Consensus 212 --~~r~~~p~dva~~v~~L~s~~~~~~----------itG~~i~vdg~~~~ 250 (254)
T 3kzv_A 212 --NNQLLDSSVPATVYAKLALHGIPDG----------VNGQYLSYNDPALA 250 (254)
T ss_dssp --TC----CHHHHHHHHHHHHHCCCGG----------GTTCEEETTCGGGG
T ss_pred --cCCcCCcccHHHHHHHHHhhcccCC----------CCccEEEecCcccc
Confidence 1236778999999999887662 32 34489999887643
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=202.19 Aligned_cols=207 Identities=14% Similarity=0.039 Sum_probs=152.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+..+++|+||||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.+++.++++.+
T Consensus 24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~~ 100 (262)
T 3rkr_A 24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVA---AGGEAESHACDLSHSDAIAAFATGV 100 (262)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH---hCCceeEEEecCCCHHHHHHHHHHH
Confidence 4457899999999999999999999999999999999976544333322221 2357899999999999999988875
Q ss_pred -----CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||.... ....++.+..+++|+.|+.++++++.. .+.+ +||++||...+..
T Consensus 101 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~------- 172 (262)
T 3rkr_A 101 LAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRG-HIINISSLAGKNP------- 172 (262)
T ss_dssp HHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCC-EEEEECSSCSSCC-------
T ss_pred HHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCc-eEEEEechhhcCC-------
Confidence 68999999997321 112333467999999999888887643 4443 9999999877642
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++.... ... ...
T Consensus 173 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----------~~~------------~~~ 225 (262)
T 3rkr_A 173 -----VADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVG----------LSA------------KKS 225 (262)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------------------------------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccc----------ccc------------ccc
Confidence 145678999999999999999877 48999999999998763221 000 011
Q ss_pred ccccccHHHHHHHHHHHhhhcc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
...++..+|+|++++.++....
T Consensus 226 ~~~~~~p~dvA~~v~~l~s~~~ 247 (262)
T 3rkr_A 226 ALGAIEPDDIADVVALLATQAD 247 (262)
T ss_dssp ---CCCHHHHHHHHHHHHTCCT
T ss_pred cccCCCHHHHHHHHHHHhcCcc
Confidence 2236789999999999987755
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=202.37 Aligned_cols=228 Identities=14% Similarity=0.089 Sum_probs=168.0
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.+++||+++||||+++||+++++.|+++|++|++.+|+... +....... ...++.++.+|++|+++++++++..+
T Consensus 5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~--~~~~~~~~---~g~~~~~~~~Dv~d~~~v~~~~~~g~ 79 (247)
T 4hp8_A 5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPD--ETLDIIAK---DGGNASALLIDFADPLAAKDSFTDAG 79 (247)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHH---TTCCEEEEECCTTSTTTTTTSSTTTC
T ss_pred cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHH--HHHHHHHH---hCCcEEEEEccCCCHHHHHHHHHhCC
Confidence 46899999999999999999999999999999999997542 22222221 24578999999999999999888778
Q ss_pred ccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|++|||||+..... ..++.+..+++|+.|+..+.+++ ++.+...+||++||...+... .
T Consensus 80 iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~------------~ 147 (247)
T 4hp8_A 80 FDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGG------------I 147 (247)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------S
T ss_pred CCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCC------------C
Confidence 999999999865422 23345679999999988877764 333433489999997664321 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
....|++||.+...+.+.++.++ ||++++|.||.|..|.......-....+.+...-|+.. +-..
T Consensus 148 ~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR------------~g~p 215 (247)
T 4hp8_A 148 RVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADAARNKAILERIPAGR------------WGHS 215 (247)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTTSS------------CBCT
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCCCC------------CcCH
Confidence 45789999999999999999875 89999999999987632110000122333444333222 4557
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
+|+|.+++.++...... ..|+++.|.+|
T Consensus 216 eeiA~~v~fLaSd~a~~----------iTG~~i~VDGG 243 (247)
T 4hp8_A 216 EDIAGAAVFLSSAAADY----------VHGAILNVDGG 243 (247)
T ss_dssp HHHHHHHHHHTSGGGTT----------CCSCEEEESTT
T ss_pred HHHHHHHHHHhCchhcC----------CcCCeEEECcc
Confidence 99999999888665433 45589999876
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-25 Score=204.21 Aligned_cols=210 Identities=15% Similarity=0.123 Sum_probs=155.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+.+|++|||||+|+||++++++|+++|++|++++|+.+. .+.....++.++.+|++|.++++++++.+
T Consensus 13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~---------~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (266)
T 3p19_A 13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVER---------LKALNLPNTLCAQVDVTDKYTFDTAITRAEK 83 (266)
T ss_dssp --CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHH---------HHTTCCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH---------HHHhhcCCceEEEecCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999995322 11223347899999999999999988855
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+..
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g-~IV~isS~~~~~~---------- 152 (266)
T 3p19_A 84 IYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCG-TIINISSIAGKKT---------- 152 (266)
T ss_dssp HHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSC----------
T ss_pred HCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEcChhhCCC----------
Confidence 6799999999864322 22234578999999998866655 455544 9999999877642
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++....... .......... .. ....
T Consensus 153 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~-~~----------~~~r 218 (266)
T 3p19_A 153 --FPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTS-QQIKDGYDAW-RV----------DMGG 218 (266)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSC-HHHHHHHHHH-HH----------HTTC
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccc-hhhhHHHHhh-cc----------cccC
Confidence 1345789999999999999998774 8999999999999875322110 1111111100 00 1123
Q ss_pred cccHHHHHHHHHHHhhhccc
Q 042406 300 FTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~ 319 (424)
+++++|+|++++.++..+..
T Consensus 219 ~~~pedvA~av~~l~~~~~~ 238 (266)
T 3p19_A 219 VLAADDVARAVLFAYQQPQN 238 (266)
T ss_dssp CBCHHHHHHHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcCCCC
Confidence 78899999999999987653
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=202.57 Aligned_cols=229 Identities=13% Similarity=0.060 Sum_probs=160.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
..++|++|||||+|+||++++++|+++|++|++.++......+....... ....++.++.+|++|.++++++++.+
T Consensus 24 ~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIE--AAGGKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp ---CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHH--HTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH--hcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999986654432222211111 12357899999999999999998865
Q ss_pred ---CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||+...... .++.+..+++|+.|+.++++++..... ..+||++||...+...
T Consensus 102 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 169 (267)
T 3u5t_A 102 AFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLH------------ 169 (267)
T ss_dssp HHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCC------------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCC------------
Confidence 68999999998654322 222356889999999999988765421 2389999997765421
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.....|++||++.+.+++.++.++ |+++++|+||.|.++..... ........+.... ....+..
T Consensus 170 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~------------p~~r~~~ 236 (267)
T 3u5t_A 170 PSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEG-KSDEVRDRFAKLA------------PLERLGT 236 (267)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC------------CHHHHHTSS------------TTCSCBC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCcccccc-CCHHHHHHHHhcC------------CCCCCcC
Confidence 345789999999999999999885 89999999999988743210 0011112222221 1224778
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
++|+|++++.++...... ..|+++++.+|
T Consensus 237 pedvA~~v~~L~s~~~~~----------itG~~i~vdGG 265 (267)
T 3u5t_A 237 PQDIAGAVAFLAGPDGAW----------VNGQVLRANGG 265 (267)
T ss_dssp HHHHHHHHHHHHSTTTTT----------CCSEEEEESSS
T ss_pred HHHHHHHHHHHhCccccC----------ccCCEEEeCCC
Confidence 999999999988755432 44589999876
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.9e-25 Score=200.12 Aligned_cols=201 Identities=15% Similarity=0.139 Sum_probs=153.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-------GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
+|+|+||||+|+||++++++|+++|+ +|++++|+.+........... ...++.++.+|++|.++++++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~ 78 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA---EGALTDTITADISDMADVRRLTT 78 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHc---cCCeeeEEEecCCCHHHHHHHHH
Confidence 57899999999999999999999999 999999965433222211111 13468999999999999998887
Q ss_pred cc-----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCC
Q 042406 152 VV-----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 152 ~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~ 218 (424)
.+ ++|+||||||..... ...++.+..+++|+.|+.++++++.. .+.+ +||++||...+..
T Consensus 79 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~------ 151 (244)
T 2bd0_A 79 HIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSG-HIFFITSVAATKA------ 151 (244)
T ss_dssp HHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSC------
T ss_pred HHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-EEEEEecchhcCC------
Confidence 53 579999999986432 12234567899999999998888743 3443 9999999888752
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
..+...|+.||++.+.+++.++.+ .|+++++||||.|++|...... . ..
T Consensus 152 ------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~------------~---------~~- 203 (244)
T 2bd0_A 152 ------FRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVD------------D---------EM- 203 (244)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCC------------S---------TT-
T ss_pred ------CCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhcc------------c---------cc-
Confidence 144578999999999999988765 4899999999999998543210 0 00
Q ss_pred cccccccHHHHHHHHHHHhhhcc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
...+++++|+|++++.++..+.
T Consensus 204 -~~~~~~~~dva~~~~~l~~~~~ 225 (244)
T 2bd0_A 204 -QALMMMPEDIAAPVVQAYLQPS 225 (244)
T ss_dssp -GGGSBCHHHHHHHHHHHHTSCT
T ss_pred -cccCCCHHHHHHHHHHHHhCCc
Confidence 1258999999999999997654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-26 Score=210.46 Aligned_cols=239 Identities=15% Similarity=0.093 Sum_probs=164.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+........... .....++.++.+|++|.++++++++.+
T Consensus 4 m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (267)
T 2gdz_A 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHE-QFEPQKTLFIQCDVADQQQLRDTFRKVVD 82 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTT-TSCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-hcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999965433222211111 111346889999999999999988765
Q ss_pred ---CccEEEEcccccCchhhccChHHHHHHHHHHHHH----HHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVN----LLETCKSSD--PQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~----ll~a~~~~~--~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||... .++.+..+++|+.++.+ +++.+++.+ ..++||++||...+...
T Consensus 83 ~~g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 147 (267)
T 2gdz_A 83 HFGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV----------- 147 (267)
T ss_dssp HHSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-----------
T ss_pred HcCCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCC-----------
Confidence 6799999999753 35678899999997654 455555543 12489999998877531
Q ss_pred CCCCChHHHHHHHHHHHHHHHH--HH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYN--HI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~--~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.+...|+.||.+.+.+++.++ .+ .|+++++|+||.|.++.... ...... . +.................
T Consensus 148 -~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~----~-~~~~~~~~~~~~~~~~~~ 220 (267)
T 2gdz_A 148 -AQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILES-IEKEEN----M-GQYIEYKDHIKDMIKYYG 220 (267)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHG-GGCHHH----H-GGGGGGHHHHHHHHHHHC
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhc-cccccc----c-chhhhHHHHHHHHhcccc
Confidence 345689999999999999852 32 48999999999998762110 000000 0 000000000000011234
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHH
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRL 349 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el 349 (424)
+++++|+|++++.++.... ..|++|++.+++.+++.|+
T Consensus 221 ~~~~~dvA~~v~~l~s~~~------------~~G~~~~v~gg~~~~~~~~ 258 (267)
T 2gdz_A 221 ILDPPLIANGLITLIEDDA------------LNGAIMKITTSKGIHFQDY 258 (267)
T ss_dssp CBCHHHHHHHHHHHHHCTT------------CSSCEEEEETTTEEEECCC
T ss_pred CCCHHHHHHHHHHHhcCcC------------CCCcEEEecCCCcccccCc
Confidence 7899999999999987643 3348999999887776553
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-24 Score=198.19 Aligned_cols=230 Identities=13% Similarity=0.096 Sum_probs=167.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCC-CCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF-NNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
++++|+++||||+|+||++++++|+++|++|+++++. .+........... ....+.++.+|++|.++++++++..
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQS---NGGSAFSIGANLESLHGVEALYSSLD 80 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHh---cCCceEEEecCcCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999987544 3333222222221 2457889999999999988887754
Q ss_pred ----------CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCC
Q 042406 154 ----------AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 154 ----------~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~ 218 (424)
++|+||||||....... .++.+..+++|+.|+.++++++.... ...+||++||...+...
T Consensus 81 ~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~----- 155 (255)
T 3icc_A 81 NELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL----- 155 (255)
T ss_dssp HHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCC-----
T ss_pred HHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCC-----
Confidence 27999999998644322 22335689999999999999987652 11389999998776421
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
.....|++||++.+.+++.++.++ |+++++|+||.|.++..........+........+
T Consensus 156 -------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~----------- 217 (255)
T 3icc_A 156 -------PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISA----------- 217 (255)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTST-----------
T ss_pred -------CCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhccCC-----------
Confidence 345789999999999999998775 89999999999998754322111122222222221
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 218 -~~~~~~~~dva~~~~~l~s~~~~~----------~tG~~i~vdgG~ 253 (255)
T 3icc_A 218 -FNRLGEVEDIADTAAFLASPDSRW----------VTGQLIDVSGGS 253 (255)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSST
T ss_pred -cCCCCCHHHHHHHHHHHhCcccCC----------ccCCEEEecCCe
Confidence 223778999999999888655432 445899998875
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=204.46 Aligned_cols=209 Identities=18% Similarity=0.131 Sum_probs=155.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|++|||||+|+||++++++|+++|++|++++|+.+..+..............++.++.+|++|.++++++++.+
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999766554443333222112267899999999999999988765
Q ss_pred ---CccEEEEcccccCchh---hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY---AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~---~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+..
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~----------- 151 (250)
T 3nyw_A 84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNG-YIFNVASRAAKYG----------- 151 (250)
T ss_dssp HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECC-----------------
T ss_pred hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEEccHHhcCC-----------
Confidence 6899999999854321 22334679999999998888876 334443 8999999766431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++ +.... ... .....+
T Consensus 152 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~----------~~~~~--~~~----------~~~~~~ 208 (250)
T 3nyw_A 152 -FADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTD----------MAKKA--GTP----------FKDEEM 208 (250)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSH----------HHHHT--TCC----------SCGGGS
T ss_pred -CCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCc----------hhhhc--CCC----------cccccC
Confidence 1346889999999999999998875 899999999999775 21111 111 112348
Q ss_pred ccHHHHHHHHHHHhhhccc
Q 042406 301 TYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~ 319 (424)
++.+|+|++++.++..+..
T Consensus 209 ~~p~dva~~v~~l~s~~~~ 227 (250)
T 3nyw_A 209 IQPDDLLNTIRCLLNLSEN 227 (250)
T ss_dssp BCHHHHHHHHHHHHTSCTT
T ss_pred CCHHHHHHHHHHHHcCCCc
Confidence 8999999999999986653
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-25 Score=202.41 Aligned_cols=219 Identities=14% Similarity=0.103 Sum_probs=160.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCH-HHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDK-SLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~v~~~~~~~ 153 (424)
++++|+++||||+|+||++++++|+++|++ |++++|+.+. ........ .....++.++.+|++|. ++++++++.+
T Consensus 2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (254)
T 1sby_A 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKA-INPKVNITFHTYDVTVPVAESKKLLKKI 78 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHH-HCTTSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHH-hCCCceEEEEEEecCCChHHHHHHHHHH
Confidence 367899999999999999999999999997 9999997642 11121211 11234689999999998 8888888754
Q ss_pred -----CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCC------CCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP------QPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~------~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||... .++.+..+++|+.|+.++++++..... ..+||++||...+...
T Consensus 79 ~~~~g~id~lv~~Ag~~~----~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 145 (254)
T 1sby_A 79 FDQLKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI--------- 145 (254)
T ss_dssp HHHHSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC---------
T ss_pred HHhcCCCCEEEECCccCC----HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCC---------
Confidence 6799999999753 456789999999999999888764321 2379999998887531
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC-cH--HHHHHHHHcCCceeEEecCCCCcc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDM-AY--FFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.+...|+.||++.+.+++.++.+ .|+++++|+||.|.++...... .. ..........
T Consensus 146 ---~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~-------------- 208 (254)
T 1sby_A 146 ---HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS-------------- 208 (254)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTT--------------
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHHhc--------------
Confidence 34578999999999999998876 5899999999999987321100 00 0000111111
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
..+.+++|+|++++.+++.. ..|++|++.+|
T Consensus 209 -~~~~~~~dvA~~i~~~~~~~-------------~~G~~~~v~gG 239 (254)
T 1sby_A 209 -HPTQTSEQCGQNFVKAIEAN-------------KNGAIWKLDLG 239 (254)
T ss_dssp -SCCEEHHHHHHHHHHHHHHC-------------CTTCEEEEETT
T ss_pred -CCCCCHHHHHHHHHHHHHcC-------------CCCCEEEEeCC
Confidence 12347999999999888632 22389999887
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=208.92 Aligned_cols=228 Identities=14% Similarity=0.036 Sum_probs=167.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++..
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 106 (275)
T 4imr_A 30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIA---SGGTAQELAGDLSEAGAGTDLIERAEA 106 (275)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHH---TTCCEEEEECCTTSTTHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999987765554443322 2467899999999999998888754
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+..
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~Iv~isS~~~~~~----------- 174 (275)
T 4imr_A 107 IAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWG-RVVSIGSINQLRP----------- 174 (275)
T ss_dssp HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSC-----------
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEECCHHhCCC-----------
Confidence 6899999999754322 22334678999999999988876 334443 9999999877641
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC-cHHHHHHHHHcCC-ceeEEecCCCCcccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM-AYFFFTRDIIRGK-RITVYEAPDGASVAR 298 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 298 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++...... ..+.....+.... + ..
T Consensus 175 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p------------~~ 241 (275)
T 4imr_A 175 -KSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLNW------------MG 241 (275)
T ss_dssp -CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHST------------TC
T ss_pred -CCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhcCc------------cC
Confidence 1345679999999999999998875 899999999999876211000 0001111111111 1 11
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
-+...+|+|++++.++...... ..|+++++.+|
T Consensus 242 r~~~pedvA~~v~fL~s~~a~~----------itG~~i~vdGG 274 (275)
T 4imr_A 242 RAGRPEEMVGAALFLASEACSF----------MTGETIFLTGG 274 (275)
T ss_dssp SCBCGGGGHHHHHHHHSGGGTT----------CCSCEEEESSC
T ss_pred CCcCHHHHHHHHHHHcCcccCC----------CCCCEEEeCCC
Confidence 2567899999999988765432 44589999876
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=196.13 Aligned_cols=219 Identities=16% Similarity=0.110 Sum_probs=161.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
++|+++||||+|+||++++++|+++|++|++++|+.+..+........ ....++.++.+|++|.++++++++.+
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQ--EQGVEVFYHHLDVSKAESVEEFSKKVLERF 78 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHCCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--hcCCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999976554443333221 12468999999999999999998865
Q ss_pred -CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS---DPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~---~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++... +.+ ++|++||...+.. .
T Consensus 79 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~ii~~sS~~~~~~------------~ 145 (235)
T 3l77_A 79 GDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGG-LALVTTSDVSARL------------I 145 (235)
T ss_dssp SSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEECCGGGSSC------------C
T ss_pred CCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-cEEEEecchhccc------------C
Confidence 6899999999865432 23344679999999999998887542 222 6777777554421 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHH
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY-GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYID 304 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~-~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 304 (424)
.....|+.||++.+.+++.+..+. ++++++|+||.|.++...... .......++..+
T Consensus 146 ~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~----------------------~~~~~~~~~~p~ 203 (235)
T 3l77_A 146 PYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKP----------------------GKPKEKGYLKPD 203 (235)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCS----------------------CCCGGGTCBCHH
T ss_pred CCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccC----------------------CcccccCCCCHH
Confidence 334789999999999999985443 899999999999876432100 011122578899
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 305 Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
|+|++++.++..+... ..+++....++..
T Consensus 204 dva~~v~~l~~~~~~~----------~~~~~~~~~~~~~ 232 (235)
T 3l77_A 204 EIAEAVRCLLKLPKDV----------RVEELMLRSVYQR 232 (235)
T ss_dssp HHHHHHHHHHTSCTTC----------CCCEEEECCTTSC
T ss_pred HHHHHHHHHHcCCCCC----------ccceEEEeecccC
Confidence 9999999999887643 2336666655553
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-25 Score=201.42 Aligned_cols=219 Identities=14% Similarity=0.085 Sum_probs=158.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+++||||+|+||++++++|+++|++|++++|+.+. ...+ . ++.++.+|++| +++.++++..
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~-------~~~~-~---~~~~~~~D~~~-~~~~~~~~~~~~~~g 69 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE-------AAQS-L---GAVPLPTDLEK-DDPKGLVKRALEALG 69 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH-------HHHH-H---TCEEEECCTTT-SCHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH-------HHHh-h---CcEEEecCCch-HHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999997643 1111 1 27889999999 8777776543
Q ss_pred CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||...... ..++.+..+++|+.++.++++++. +.+.+ +||++||...+.... .
T Consensus 70 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~~----------~ 138 (239)
T 2ekp_A 70 GLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWG-RVLFIGSVTTFTAGG----------P 138 (239)
T ss_dssp SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCCT----------T
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECchhhccCCC----------C
Confidence 6799999999754321 223446799999999988887763 44544 999999988875321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.+...|+.||++.+.+++.++.++ |+++++||||.+.++........+.+...+....+ ...+.+
T Consensus 139 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p------------~~~~~~ 206 (239)
T 2ekp_A 139 VPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIP------------MGRWAR 206 (239)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTCT------------TSSCBC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhcCC------------CCCCcC
Confidence 345789999999999999998775 89999999999998742110000112222222111 123789
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+|+|++++.++...... ..|+.+++.+|.
T Consensus 207 ~~dvA~~~~~l~s~~~~~----------~tG~~~~vdgG~ 236 (239)
T 2ekp_A 207 PEEIARVAAVLCGDEAEY----------LTGQAVAVDGGF 236 (239)
T ss_dssp HHHHHHHHHHHTSGGGTT----------CCSCEEEESTTT
T ss_pred HHHHHHHHHHHcCchhcC----------CCCCEEEECCCc
Confidence 999999999988654322 344899998774
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.3e-25 Score=200.70 Aligned_cols=201 Identities=13% Similarity=0.075 Sum_probs=147.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++|+|+||||+|+||++++++|+++| ++|++++|+.+..... . +. ...++.++.+|++|.++++++++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l----~-~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL----K-SI-KDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHH----H-TC-CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHH----H-hc-cCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999 9999999976543221 1 11 2457899999999999999988854
Q ss_pred -----CccEEEEcccccC-ch----hhccChHHHHHHHHHHHHHHHHHHHhc----------CC----CCeEEEecCCcc
Q 042406 154 -----AFTHVMHLAAQAG-VR----YAMQNPNSYVESNIAGFVNLLETCKSS----------DP----QPAIVWASSSSV 209 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~-~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~----------~~----~~~~v~~SS~~v 209 (424)
++|+||||||... .. ...++.+..+++|+.++.++++++... +. .++||++||...
T Consensus 76 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 155 (250)
T 1yo6_A 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred hcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcc
Confidence 6799999999865 21 122334678999999999988876543 30 249999999877
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCcee
Q 042406 210 YGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRIT 286 (424)
Q Consensus 210 yg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 286 (424)
+..... + ..+..+...|+.||++.+.+++.++.++ |+++++|+||.|.++....
T Consensus 156 ~~~~~~----~-~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------------------ 212 (250)
T 1yo6_A 156 SITDNT----S-GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK------------------ 212 (250)
T ss_dssp CSTTCC----S-TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------------
T ss_pred ccCCcc----c-ccccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC------------------
Confidence 643211 0 1111456789999999999999998875 8999999999998763210
Q ss_pred EEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 287 VYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 287 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
..+++.+|+|++++.++....
T Consensus 213 -----------~~~~~~~~~a~~~~~~~~~~~ 233 (250)
T 1yo6_A 213 -----------NAALTVEQSTAELISSFNKLD 233 (250)
T ss_dssp -----------------HHHHHHHHHHHTTCC
T ss_pred -----------CCCCCHHHHHHHHHHHHhccc
Confidence 025778999999999998764
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=199.80 Aligned_cols=210 Identities=13% Similarity=0.048 Sum_probs=159.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-C
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-A 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~ 154 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+ +|++|.++++++++.. +
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----------------------~D~~~~~~v~~~~~~~g~ 59 (223)
T 3uce_A 3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-----------------------LDISDEKSVYHYFETIGA 59 (223)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-----------------------CCTTCHHHHHHHHHHHCS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-----------------------cCCCCHHHHHHHHHHhCC
Confidence 467899999999999999999999999999999998321 7999999999999875 6
Q ss_pred ccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTDQPA 228 (424)
Q Consensus 155 ~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~ 228 (424)
+|+||||||.... ....++.+..+++|+.|+.++++++.+... ..+||++||...+.. ..+.
T Consensus 60 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------~~~~ 127 (223)
T 3uce_A 60 FDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKV------------VANT 127 (223)
T ss_dssp EEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSC------------CTTC
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccC------------CCCc
Confidence 7999999997632 122333467899999999999999876521 238999999877653 1455
Q ss_pred ChHHHHHHHHHHHHHHHHHHhC-CcEEEEEeccccCCCCCCCCc--HHHHHHHHHcCCceeEEecCCCCccccccccHHH
Q 042406 229 SLYAATKKAGEAIAHAYNHIYG-LSITGLRFFTVYGPWGRPDMA--YFFFTRDIIRGKRITVYEAPDGASVARDFTYIDD 305 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~~~-i~~~~vrp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 305 (424)
..|++||++.+.+++.++.+++ +++++|+||.|.++....... ...+........+ ...+.+++|
T Consensus 128 ~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~d 195 (223)
T 3uce_A 128 YVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLP------------VGKVGEASD 195 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHST------------TCSCBCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCC------------CCCccCHHH
Confidence 7899999999999999998875 999999999999875432110 1112222222222 123778999
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 306 IVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 306 va~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
+|++++.++.... ..|+++++.+|..+
T Consensus 196 vA~~~~~l~~~~~------------~tG~~i~vdgG~~~ 222 (223)
T 3uce_A 196 IAMAYLFAIQNSY------------MTGTVIDVDGGALL 222 (223)
T ss_dssp HHHHHHHHHHCTT------------CCSCEEEESTTGGG
T ss_pred HHHHHHHHccCCC------------CCCcEEEecCCeec
Confidence 9999999887422 34589999988654
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-25 Score=201.22 Aligned_cols=217 Identities=13% Similarity=0.078 Sum_probs=157.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||++++++|+++|++|++++|+.+... .+..+.+|++|.++++++++.+
T Consensus 12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~~D~~~~~~~~~~~~~~~~ 77 (247)
T 1uzm_A 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK--------------GLFGVEVDVTDSDAVDRAFTAVEE 77 (247)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT--------------TSEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH--------------HhcCeeccCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999654321 1224889999999999888764
Q ss_pred ---CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.+ .+. ++||++||...+...
T Consensus 78 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 147 (247)
T 1uzm_A 78 HQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKF-GRMIFIGSVSGLWGI--------- 147 (247)
T ss_dssp HHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCCCC-------------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CEEEEECCHhhccCC---------
Confidence 679999999986432 12334467999999999998887653 444 399999997654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.+...|+.||.+.+.+++.++.++ |+++++|+||.|.++.... ........+.... ....
T Consensus 148 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~------------p~~~ 210 (247)
T 1uzm_A 148 ---GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA--LDERIQQGALQFI------------PAKR 210 (247)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH--SCHHHHHHHGGGC------------TTCS
T ss_pred ---CCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhh--cCHHHHHHHHhcC------------CCCC
Confidence 345789999999999999998774 8999999999998762110 0011111111110 1123
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
+.+++|+|++++.++...... ..|+++++.+|..
T Consensus 211 ~~~~~dvA~~~~~l~s~~~~~----------~~G~~i~vdgG~~ 244 (247)
T 1uzm_A 211 VGTPAEVAGVVSFLASEDASY----------ISGAVIPVDGGMG 244 (247)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred CcCHHHHHHHHHHHcCccccC----------CcCCEEEECCCcc
Confidence 789999999999988754322 3448999988754
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=203.03 Aligned_cols=220 Identities=13% Similarity=0.122 Sum_probs=162.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHh-CCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKK-RGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.++|++|||||+|+||++++++|++ .|+.|++.+|+.+. ....+.++.+|++|.++++++++..
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~-------------~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 68 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF-------------SAENLKFIKADLTKQQDITNVLDIIKN 68 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC-------------CCTTEEEEECCTTCHHHHHHHHHHTTT
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc-------------ccccceEEecCcCCHHHHHHHHHHHHh
Confidence 4678999999999999999999999 78999999985431 1246789999999999999988644
Q ss_pred -CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHHhcCCC-CeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCKSSDPQ-PAIVWASSSSVYGVNKKVPFSEKDRTDQP 227 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~ 227 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++...... .+||++||...+.. ..+
T Consensus 69 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~------------~~~ 136 (244)
T 4e4y_A 69 VSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIA------------KPN 136 (244)
T ss_dssp CCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCC------------CTT
T ss_pred CCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccC------------CCC
Confidence 679999999986432 123334678999999999999998765321 38999999877642 134
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCC---------cHHHHHHHHHcCCceeEEecCCCCc
Q 042406 228 ASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDM---------AYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
...|++||++.+.+++.++.+ .|+++++|+||.|.+|...... ............ .
T Consensus 137 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 204 (244)
T 4e4y_A 137 SFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKE------------F 204 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTT------------S
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhc------------C
Confidence 578999999999999999875 4899999999999886321000 000011111111 1
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
....+.+++|+|++++.++...... ..|+++++.+|..
T Consensus 205 p~~r~~~p~dvA~~v~~l~s~~~~~----------itG~~i~vdGG~~ 242 (244)
T 4e4y_A 205 PLNRIAQPQEIAELVIFLLSDKSKF----------MTGGLIPIDGGYT 242 (244)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred CCCCCcCHHHHHHHHHHHhcCcccc----------ccCCeEeECCCcc
Confidence 2234788999999999998765432 3458999988753
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=203.05 Aligned_cols=232 Identities=16% Similarity=0.089 Sum_probs=163.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+..... ..+ ..++.++.+|++|.++++++++.+
T Consensus 6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~----~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~ 78 (270)
T 1yde_A 6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL----EQE---LPGAVFILCDVTQEDDVKTLVSETIR 78 (270)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----HHH---CTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHH---hcCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999965332211 111 135889999999999999988765
Q ss_pred ---CccEEEEcccccCc--hh---hccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCccc-CCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV--RY---AMQNPNSYVESNIAGFVNLLETCKSS---DPQPAIVWASSSSVY-GVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~--~~---~~~~~~~~~~~N~~g~~~ll~a~~~~---~~~~~~v~~SS~~vy-g~~~~~~~~e~ 221 (424)
++|+||||||.... .. ..++.+..+++|+.|+.++++++... .. ++||++||...+ +.
T Consensus 79 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 148 (270)
T 1yde_A 79 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIGQ--------- 148 (270)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCHHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEcCccccCCC---------
Confidence 68999999997542 11 12234678999999999998887532 22 499999997543 32
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCC----CCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRP----DMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.....|+.||++.+.+++.++.+ .|+++++|+||.|+++.... ...............+
T Consensus 149 ----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p---------- 214 (270)
T 1yde_A 149 ----AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQP---------- 214 (270)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTST----------
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcCC----------
Confidence 33578999999999999999876 48999999999999873110 0000000111111111
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHH
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVS 351 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~ 351 (424)
...+...+|+|++++.++..... ..|+++++.+|..+...+...
T Consensus 215 --~~r~~~p~dva~~v~~L~s~~~~-----------itG~~i~vdGG~~~~~~~~~~ 258 (270)
T 1yde_A 215 --LGRMGQPAEVGAAAVFLASEANF-----------CTGIELLVTGGAELGYGCKAS 258 (270)
T ss_dssp --TSSCBCHHHHHHHHHHHHHHCTT-----------CCSCEEEESTTTTSCC-----
T ss_pred --CCCCcCHHHHHHHHHHHcccCCC-----------cCCCEEEECCCeecccCcCcc
Confidence 11267899999999988875221 344899999987666544443
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=206.54 Aligned_cols=216 Identities=17% Similarity=0.130 Sum_probs=153.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|++|||||+|+||++++++|+++|++|++++|+.+..+........ .....+.++.+|++|.++++++++.+
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 106 (281)
T 4dry_A 29 GSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGG--RTGNIVRAVVCDVGDPDQVAALFAAVR 106 (281)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--cCCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999976554443333222 12334689999999999999998866
Q ss_pred ----CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHHHh----cC-CCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETCKS----SD-PQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~-~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.. .+ ...+||++||...+..
T Consensus 107 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~------- 179 (281)
T 4dry_A 107 AEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTP------- 179 (281)
T ss_dssp HHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCC-------
T ss_pred HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCC-------
Confidence 789999999985431 12334467999999998877776543 32 1238999999776532
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
..+...|++||++.+.+++.++.+ .|+++++|+||.|.++... .+... ... ......
T Consensus 180 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~----------~~~~~----~~~-~~~~~~ 239 (281)
T 4dry_A 180 -----RPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTA----------RMSTG----VLQ-ANGEVA 239 (281)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-----------------CE----EEC-TTSCEE
T ss_pred -----CCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhh----------hhcch----hhh-hhhccc
Confidence 145688999999999999999877 4899999999999876321 11110 000 001112
Q ss_pred ccccccHHHHHHHHHHHhhhccc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
...++.++|+|++++.++..+..
T Consensus 240 ~~~~~~pedvA~~v~fL~s~~~~ 262 (281)
T 4dry_A 240 AEPTIPIEHIAEAVVYMASLPLS 262 (281)
T ss_dssp ECCCBCHHHHHHHHHHHHHSCTT
T ss_pred ccCCCCHHHHHHHHHHHhCCCcc
Confidence 22378999999999999987653
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=197.72 Aligned_cols=180 Identities=14% Similarity=0.140 Sum_probs=143.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-CccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-AFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~~d~v 158 (424)
|+|+||||+|+||++++++|+ +|++|++++|+.+ ++.+|++|.+++++++++. ++|+|
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~~d~v 62 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG--------------------DVTVDITNIDSIKKMYEQVGKVDAI 62 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS--------------------SEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc--------------------ceeeecCCHHHHHHHHHHhCCCCEE
Confidence 589999999999999999999 9999999999532 4789999999999999875 57999
Q ss_pred EEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 042406 159 MHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAA 233 (424)
Q Consensus 159 i~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~ 233 (424)
|||||....... .++.+..+++|+.++.++++++.+... +++||++||...+.. ..+...|+.
T Consensus 63 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~------------~~~~~~Y~~ 130 (202)
T 3d7l_A 63 VSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDP------------IVQGASAAM 130 (202)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSC------------CTTCHHHHH
T ss_pred EECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCC------------CCccHHHHH
Confidence 999997543221 222356889999999999999987611 138999999876542 144578999
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHH
Q 042406 234 TKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~ 311 (424)
+|.+.|.+++.++.++ |++++++|||.++++.. .. + .....+++++++|+|++++
T Consensus 131 sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~-----------~~--~----------~~~~~~~~~~~~dva~~~~ 187 (202)
T 3d7l_A 131 ANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD-----------KL--E----------PFFEGFLPVPAAKVARAFE 187 (202)
T ss_dssp HHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH-----------HH--G----------GGSTTCCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh-----------hh--h----------hhccccCCCCHHHHHHHHH
Confidence 9999999999998764 89999999999998721 00 0 1122456899999999998
Q ss_pred HHhh
Q 042406 312 AGLD 315 (424)
Q Consensus 312 ~~~~ 315 (424)
.++.
T Consensus 188 ~~~~ 191 (202)
T 3d7l_A 188 KSVF 191 (202)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8873
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-25 Score=203.25 Aligned_cols=228 Identities=15% Similarity=0.111 Sum_probs=161.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVRE---KGVEARSYVCDVTSEEAVIGTVDSVVR 80 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT---TTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999975443332222211 1346889999999999998888755
Q ss_pred ---CccEEEEccccc-Cch----hhccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQA-GVR----YAMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~-~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||.. ... ...++.+..+++|+.|+.++++++.. .+. ++||++||...+...
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 151 (262)
T 1zem_A 81 DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNY-GRIVNTASMAGVKGP-------- 151 (262)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHSCC--------
T ss_pred HhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcchhhccCC--------
Confidence 689999999975 221 12233467899999999988887654 343 399999997766421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC------------Cc-HHH-HHHHHHcCCc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD------------MA-YFF-FTRDIIRGKR 284 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~------------~~-~~~-~~~~~~~~~~ 284 (424)
.....|+.||.+.+.+++.++.++ |+++++|+||.|..+..... .. ... ....+....+
T Consensus 152 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 227 (262)
T 1zem_A 152 ----PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVP 227 (262)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTST
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHhcCC
Confidence 335789999999999999998764 89999999999977621100 00 000 1111111111
Q ss_pred eeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 285 ITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 285 ~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
..-+...+|+|++++.++...... ..|+++.+.+|
T Consensus 228 ------------~~r~~~p~dvA~~v~~l~s~~~~~----------itG~~i~vdGG 262 (262)
T 1zem_A 228 ------------MRRYGDINEIPGVVAFLLGDDSSF----------MTGVNLPIAGG 262 (262)
T ss_dssp ------------TSSCBCGGGSHHHHHHHHSGGGTT----------CCSCEEEESCC
T ss_pred ------------CCCCcCHHHHHHHHHHHcCchhcC----------cCCcEEecCCC
Confidence 112677899999999888754322 34478888764
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=207.17 Aligned_cols=228 Identities=14% Similarity=0.116 Sum_probs=167.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD---GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
.+++|++|||||+|+||++++++|+++|+ +|++++|+.+..+......... ....++.++.+|++|.++++++++.
T Consensus 30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQE-FPNAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH-CTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhh-CCCCeEEEEECCCCCHHHHHHHHHH
Confidence 46889999999999999999999999998 9999999765544433332221 1245789999999999999999987
Q ss_pred c-----CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCC
Q 042406 153 V-----AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~ 218 (424)
+ ++|+||||||..... ...++.+..+++|+.|+.++++++ ++.+.+ +||++||...+..
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~IV~isS~~~~~~------ 181 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSG-DIVNLGSIAGRDA------ 181 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSC------
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEECChhhcCC------
Confidence 6 689999999975421 123345679999999999988877 444444 9999999776542
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC--CCCcHHHHHHHHHcCCceeEEecCCC
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGR--PDMAYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
......|++||++.+.+++.++.++ |+++++|+||.|.++... ..... .........
T Consensus 182 ------~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~-~~~~~~~~~----------- 243 (287)
T 3rku_A 182 ------YPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNE-EQAKNVYKD----------- 243 (287)
T ss_dssp ------CTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCH-HHHHHHHTT-----------
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcH-HHHHHhhcc-----------
Confidence 1445789999999999999999884 899999999999887210 00000 011111111
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
...+.++|+|++++.++...... ..++++.+.++++
T Consensus 244 ----~~p~~pedvA~~v~~l~s~~~~~----------i~g~~i~v~~g~~ 279 (287)
T 3rku_A 244 ----TTPLMADDVADLIVYATSRKQNT----------VIADTLIFPTNQA 279 (287)
T ss_dssp ----SCCEEHHHHHHHHHHHHTSCTTE----------EEEEEEEEETTEE
T ss_pred ----cCCCCHHHHHHHHHHHhCCCCCe----------EecceEEeeCCCC
Confidence 11347899999999998876532 3347888887764
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-24 Score=197.18 Aligned_cols=204 Identities=16% Similarity=0.112 Sum_probs=154.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCC---CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHh
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRG---DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIF 150 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g---~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~ 150 (424)
...+++|+|+||||+|+||++++++|+++| ++|++++|+.+..... ..... ...++.++.+|++|.+++++++
T Consensus 16 ~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~---~~~~~~~~~~Dl~~~~~v~~~~ 91 (267)
T 1sny_A 16 PRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAK---NHSNIHILEIDLRNFDAYDKLV 91 (267)
T ss_dssp ----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHH---HCTTEEEEECCTTCGGGHHHHH
T ss_pred ccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhc---cCCceEEEEecCCChHHHHHHH
Confidence 445788999999999999999999999999 9999999987654321 11111 1357999999999999999988
Q ss_pred hcc-------CccEEEEcccccC-c----hhhccChHHHHHHHHHHHHHHHHHHHhc----------CC----CCeEEEe
Q 042406 151 NVV-------AFTHVMHLAAQAG-V----RYAMQNPNSYVESNIAGFVNLLETCKSS----------DP----QPAIVWA 204 (424)
Q Consensus 151 ~~~-------~~d~vi~~Ag~~~-~----~~~~~~~~~~~~~N~~g~~~ll~a~~~~----------~~----~~~~v~~ 204 (424)
+.+ ++|+||||||... . ....++.+..+++|+.++.++++++... +. .++||++
T Consensus 92 ~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~i 171 (267)
T 1sny_A 92 ADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINM 171 (267)
T ss_dssp HHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEE
T ss_pred HHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEE
Confidence 754 5799999999865 1 1223344678999999999998887543 10 2489999
Q ss_pred cCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHc
Q 042406 205 SSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIR 281 (424)
Q Consensus 205 SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~ 281 (424)
||...+.... ...+...|+.||++.+.+++.++.+ .|+++++||||.|.++....
T Consensus 172 sS~~~~~~~~---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------------- 229 (267)
T 1sny_A 172 SSILGSIQGN---------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS------------- 229 (267)
T ss_dssp CCGGGCSTTC---------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT-------------
T ss_pred ecccccccCC---------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC-------------
Confidence 9988765321 1135578999999999999999877 48999999999998763321
Q ss_pred CCceeEEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 282 GKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
..++..+|+|+.++.++.....
T Consensus 230 ----------------~~~~~~~~~a~~~~~~~~~~~~ 251 (267)
T 1sny_A 230 ----------------SAPLDVPTSTGQIVQTISKLGE 251 (267)
T ss_dssp ----------------TCSBCHHHHHHHHHHHHHHCCG
T ss_pred ----------------CCCCCHHHHHHHHHHHHHhcCc
Confidence 0246789999999999987543
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=205.91 Aligned_cols=177 Identities=16% Similarity=0.134 Sum_probs=133.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch-hhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY-ETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+++|+++||||+|+||++++++|+++|++|++.+|+.... .......... .....++.++.+|++|.+++.++++.+
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999964222 1111211111 112457999999999999999998865
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||+..... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||.+.+...
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g-~iV~isS~~~~~~~-------- 153 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHG-LLIWISSSSSAGGT-------- 153 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC--------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEecchhccCC--------
Confidence 6899999999754321 22334578999999999998887 555554 89999998776421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPW 265 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~ 265 (424)
......|++||++.|.+++.++.+ .|+++++|+||.|.++.
T Consensus 154 ---~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 154 ---PPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp ---CSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred ---CCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence 123478999999999999999887 48999999999998764
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-24 Score=195.24 Aligned_cols=229 Identities=16% Similarity=0.107 Sum_probs=166.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.+++||+++||||+++||+++++.|+++|++|++.+|+.+.... ..... ....++.++.+|++|+++++++++++
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~-~~~~~---~~~~~~~~~~~Dv~~~~~v~~~v~~~~ 78 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAF-LDALA---QRQPRATYLPVELQDDAQCRDAVAQTI 78 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHH-HHHHH---HHCTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHH-HHHHH---hcCCCEEEEEeecCCHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999998765322 11111 13467899999999999998888765
Q ss_pred ----CccEEEEcccccCchh---hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY---AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~---~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||+..... ..++.+..+++|+.|+.++.+++. +.+ .+||++||...+...
T Consensus 79 ~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--G~IVnisS~~~~~~~--------- 147 (258)
T 4gkb_A 79 ATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATR--GAIVNISSKTAVTGQ--------- 147 (258)
T ss_dssp HHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTHHHHCC---------
T ss_pred HHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEeehhhccCC---------
Confidence 7899999999854322 233346789999999887766653 333 389999997665321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC----cHHHHHHHHHcCCceeEEecCCCCc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM----AYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
.....|++||.+.+.+.+.++.++ ||++++|.||.|..|...... ........+....|+ +
T Consensus 148 ---~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl------g--- 215 (258)
T 4gkb_A 148 ---GNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL------G--- 215 (258)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT------T---
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC------C---
Confidence 345789999999999999999775 899999999999887432110 001122223332221 0
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+-+...+|+|.+++.++...... ..|+++.|.+|-
T Consensus 216 --~R~g~peeiA~~v~fLaS~~a~~----------iTG~~i~VDGG~ 250 (258)
T 4gkb_A 216 --RRFTTPDEIADTAVFLLSPRASH----------TTGEWLFVDGGY 250 (258)
T ss_dssp --TSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred --CCCcCHHHHHHHHHHHhCchhcC----------ccCCeEEECCCc
Confidence 12567899999999888665433 455899998874
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=193.73 Aligned_cols=213 Identities=16% Similarity=0.140 Sum_probs=158.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
.|+||||||+++||+++++.|+++|++|++.+|+.+... .... ...++.++++|++|+++++++++.+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~----~~~~---~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g 74 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSA----DFAK---ERPNLFYFHGDVADPLTLKKFVEYAMEKLQ 74 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HHHT---TCTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHH---hcCCEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 378999999999999999999999999999999643221 1111 2457899999999999999888765
Q ss_pred CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|+||||||...... ..++.+..+++|+.|+..+.+++. +.+ .++|++||...+...
T Consensus 75 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~--G~IInisS~~~~~~~------------ 140 (247)
T 3ged_A 75 RIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK--GRIINIASTRAFQSE------------ 140 (247)
T ss_dssp CCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGTSCC------------
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CcEEEEeecccccCC------------
Confidence 7899999999865422 233446799999999888777654 333 389999997765321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
.....|++||.+...+.+.++.++ |+++++|.||.|-.+.... +.......-|+. -+...
T Consensus 141 ~~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~~------~~~~~~~~~Pl~------------R~g~p 202 (247)
T 3ged_A 141 PDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQE------FTQEDCAAIPAG------------KVGTP 202 (247)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---------CCHHHHHTSTTS------------SCBCH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcHH------HHHHHHhcCCCC------------CCcCH
Confidence 335789999999999999999876 7999999999997764321 122233322221 15678
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+|+|.+++.++... . ..|+++.|.+|-
T Consensus 203 ediA~~v~fL~s~~-~-----------iTG~~i~VDGG~ 229 (247)
T 3ged_A 203 KDISNMVLFLCQQD-F-----------ITGETIIVDGGM 229 (247)
T ss_dssp HHHHHHHHHHHHCS-S-----------CCSCEEEESTTG
T ss_pred HHHHHHHHHHHhCC-C-----------CCCCeEEECcCH
Confidence 99999999988632 1 455899998874
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.5e-25 Score=204.68 Aligned_cols=228 Identities=14% Similarity=0.100 Sum_probs=167.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++|++|||||+|+||++++++|+++|++|++++|+.+........ . ..++.++.+|++|.++++++++.+
T Consensus 26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~-----~-~~~~~~~~~Dl~~~~~v~~~~~~~~ 99 (281)
T 3ppi_A 26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADE-----L-GNRAEFVSTNVTSEDSVLAAIEAAN 99 (281)
T ss_dssp GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----H-CTTEEEEECCTTCHHHHHHHHHHHT
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH-----h-CCceEEEEcCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999965433322211 1 357899999999999999988754
Q ss_pred ---CccEEEEc-ccccCch---------hhccChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCCcccC
Q 042406 154 ---AFTHVMHL-AAQAGVR---------YAMQNPNSYVESNIAGFVNLLETCKSS---------DPQPAIVWASSSSVYG 211 (424)
Q Consensus 154 ---~~d~vi~~-Ag~~~~~---------~~~~~~~~~~~~N~~g~~~ll~a~~~~---------~~~~~~v~~SS~~vyg 211 (424)
++|+|||| |+..... ...++.+..+++|+.++.++++++... +...+||++||...+.
T Consensus 100 ~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 179 (281)
T 3ppi_A 100 QLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE 179 (281)
T ss_dssp TSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS
T ss_pred HhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC
Confidence 57999999 5543221 112224679999999999998877532 1223899999987764
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEE
Q 042406 212 VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVY 288 (424)
Q Consensus 212 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (424)
. ..+...|++||++.+.+++.++.++ |+++++|+||.|.++.... ........+....+.
T Consensus 180 ~------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~--- 242 (281)
T 3ppi_A 180 G------------QIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMES--VGEEALAKFAANIPF--- 242 (281)
T ss_dssp C------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT--TCHHHHHHHHHTCCS---
T ss_pred C------------CCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhc--ccHHHHHHHHhcCCC---
Confidence 2 1346789999999999999998775 8999999999998763211 011222333333221
Q ss_pred ecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 289 EAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 289 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
...+.+++|+|++++.++.... ..|+++++.+|..++
T Consensus 243 --------~~~~~~pedvA~~v~~l~s~~~------------~tG~~i~vdGG~~~~ 279 (281)
T 3ppi_A 243 --------PKRLGTPDEFADAAAFLLTNGY------------INGEVMRLDGAQRFT 279 (281)
T ss_dssp --------SSSCBCHHHHHHHHHHHHHCSS------------CCSCEEEESTTCCCC
T ss_pred --------CCCCCCHHHHHHHHHHHHcCCC------------cCCcEEEECCCcccC
Confidence 1247899999999999987532 445899999987654
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=199.50 Aligned_cols=231 Identities=13% Similarity=0.007 Sum_probs=170.5
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCch-hhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 76 STRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYY-ETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
++++|+++||||+ |+||++++++|+++|++|++++|+.... .......... ...++.++.+|++|.++++++++.
T Consensus 17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (267)
T 3gdg_A 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKT--YGIKAKAYKCQVDSYESCEKLVKD 94 (267)
T ss_dssp CCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHH--HCCCEECCBCCTTCHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHh--cCCceeEEecCCCCHHHHHHHHHH
Confidence 5789999999999 9999999999999999999999977654 2222222211 246799999999999999998887
Q ss_pred c-----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCC
Q 042406 153 V-----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
+ ++|+||||||...... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+....
T Consensus 95 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~~----- 168 (267)
T 3gdg_A 95 VVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTG-SLVITASMSGHIANF----- 168 (267)
T ss_dssp HHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCCS-----
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCc-eEEEEccccccccCC-----
Confidence 6 7899999999865422 23334679999999999888877 444444 899999976653211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIYG--LSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~--i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
..+...|++||++.+.+++.++.+++ +++++|+||.|..+.... ........+....+ .
T Consensus 169 -----~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~~------------~ 229 (267)
T 3gdg_A 169 -----PQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDF--VPKETQQLWHSMIP------------M 229 (267)
T ss_dssp -----SSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGG--SCHHHHHHHHTTST------------T
T ss_pred -----CCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhh--CCHHHHHHHHhcCC------------C
Confidence 13457899999999999999998863 899999999998764321 11222222322221 2
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
..+.+++|+|++++.++...... ..|+++++.+|..
T Consensus 230 ~r~~~~~dva~~~~~l~s~~~~~----------itG~~i~vdgG~~ 265 (267)
T 3gdg_A 230 GRDGLAKELKGAYVYFASDASTY----------TTGADLLIDGGYT 265 (267)
T ss_dssp SSCEETHHHHHHHHHHHSTTCTT----------CCSCEEEESTTGG
T ss_pred CCCcCHHHHHhHhheeecCcccc----------ccCCEEEECCcee
Confidence 34778899999999988754332 4458999988753
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=202.35 Aligned_cols=231 Identities=10% Similarity=-0.022 Sum_probs=166.0
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEe-CCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---------
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLD-NFNNYYETSLKKARKGLLERAGVFVIDADINDKS--------- 144 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~--------- 144 (424)
.++++|+++||||+|+||+++++.|+++|++|++++ |+.+........... ....++.++.+|++|.+
T Consensus 5 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (291)
T 1e7w_A 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNA--RRPNSAITVQADLSNVATAPVSGADG 82 (291)
T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--HSTTCEEEEECCCSSSCBCCCC----
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhh--hcCCeeEEEEeecCCccccccccccc
Confidence 346789999999999999999999999999999999 865443332222211 12357899999999999
Q ss_pred --------HHHHHhhcc-----CccEEEEcccccCchh----h--------------ccChHHHHHHHHHHHHHHHHHHH
Q 042406 145 --------LLDKIFNVV-----AFTHVMHLAAQAGVRY----A--------------MQNPNSYVESNIAGFVNLLETCK 193 (424)
Q Consensus 145 --------~v~~~~~~~-----~~d~vi~~Ag~~~~~~----~--------------~~~~~~~~~~N~~g~~~ll~a~~ 193 (424)
++.++++.+ ++|+||||||...... . .++.+..+++|+.|+.++++++.
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 162 (291)
T 1e7w_A 83 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA 162 (291)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 998888765 6899999999854321 1 23345789999999998888765
Q ss_pred h----cCC-----CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccc
Q 042406 194 S----SDP-----QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTV 261 (424)
Q Consensus 194 ~----~~~-----~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v 261 (424)
. .+. ..+||++||...+.. ..+...|++||++.+.+++.++.++ |+++++|+||.|
T Consensus 163 ~~m~~~~~~~~~~~g~Iv~isS~~~~~~------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v 230 (291)
T 1e7w_A 163 HRVAGTPAKHRGTNYSIINMVDAMTNQP------------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 230 (291)
T ss_dssp HHHHTSCGGGSCSCEEEEEECCTTTTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred HHHHhcCCCCCCCCcEEEEEechhhcCC------------CCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCc
Confidence 3 330 248999999877642 1345789999999999999998774 899999999999
Q ss_pred cCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 262 YGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 262 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
..+. . . .+.....+....++ + .-+...+|+|++++.++...... ..|+++++.+|
T Consensus 231 ~T~~-~--~-~~~~~~~~~~~~p~--------~---~r~~~pedvA~~v~~l~s~~~~~----------itG~~i~vdGG 285 (291)
T 1e7w_A 231 VLVD-D--M-PPAVWEGHRSKVPL--------Y---QRDSSAAEVSDVVIFLCSSKAKY----------ITGTCVKVDGG 285 (291)
T ss_dssp CCGG-G--S-CHHHHHHHHTTCTT--------T---TSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred cCCc-c--C-CHHHHHHHHhhCCC--------C---CCCCCHHHHHHHHHHHhCCcccC----------ccCcEEEECCC
Confidence 8775 2 1 12222333322111 0 02678999999999998754322 34589999887
Q ss_pred Ccc
Q 042406 342 TPV 344 (424)
Q Consensus 342 ~~~ 344 (424)
..+
T Consensus 286 ~~~ 288 (291)
T 1e7w_A 286 YSL 288 (291)
T ss_dssp GGG
T ss_pred ccc
Confidence 543
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=199.05 Aligned_cols=218 Identities=14% Similarity=0.061 Sum_probs=156.1
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
...+++|+|+||||+|+||++++++|+++|++|++++|+.+ . . +.. ..+.++ +|+ .++++++++..
T Consensus 14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----~---~--~~~--~~~~~~-~D~--~~~~~~~~~~~ 79 (249)
T 1o5i_A 14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE----L---L--KRS--GHRYVV-CDL--RKDLDLLFEKV 79 (249)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----H---H--HHT--CSEEEE-CCT--TTCHHHHHHHS
T ss_pred HhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH----H---H--Hhh--CCeEEE-eeH--HHHHHHHHHHh
Confidence 44678999999999999999999999999999999999541 1 1 111 256777 999 45666666655
Q ss_pred -CccEEEEcccccCchh----hccChHHHHHHHHHHHHHH----HHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNL----LETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~l----l~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||...... ..++.+..+++|+.|+.++ ++.+++.+.+ +||++||...+...
T Consensus 80 ~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~----------- 147 (249)
T 1o5i_A 80 KEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWG-RIVAITSFSVISPI----------- 147 (249)
T ss_dssp CCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC-----------
T ss_pred cCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEcchHhcCCC-----------
Confidence 6799999999754321 1233467899999997665 4455555654 99999998887531
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHH-HHHcCCceeEEecCCCCcccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTR-DIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.+...|+.||.+.+.+++.++.+ .|+++++|+||.|+++.... ....... .+....+ ...+
T Consensus 148 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~p------------~~~~ 212 (249)
T 1o5i_A 148 -ENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE--LLSEEKKKQVESQIP------------MRRM 212 (249)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHH--HSCHHHHHHHHTTST------------TSSC
T ss_pred -CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccc--cchhhHHHHHHhcCC------------CCCC
Confidence 34578999999999999999876 48999999999999884210 0001111 2222111 1247
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+++|+|++++.++...... ..|++|++.+|.
T Consensus 213 ~~~~dvA~~i~~l~s~~~~~----------~tG~~~~vdgG~ 244 (249)
T 1o5i_A 213 AKPEEIASVVAFLCSEKASY----------LTGQTIVVDGGL 244 (249)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred cCHHHHHHHHHHHcCccccC----------CCCCEEEECCCc
Confidence 89999999999888754322 334899998875
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-24 Score=195.37 Aligned_cols=206 Identities=15% Similarity=0.182 Sum_probs=147.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
|+++||||+|+||+++++.|+++|++|++++|+.+....... + . ..++.++.+|++|.++++++++.+ +
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~----~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 74 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD----E-L-GDNLYIAQLDVRNRAAIEEMLASLPAEWCN 74 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----H-H-CTTEEEEECCTTCHHHHHHHHHTSCTTTCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----H-h-cCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 679999999999999999999999999999996543222111 1 1 247899999999999999999865 6
Q ss_pred ccEEEEcccccC-c----hhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAG-V----RYAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 155 ~d~vi~~Ag~~~-~----~~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
+|+||||||... . ....++.+..+++|+.|+.++++++. +.+.+ +||++||...+.. .
T Consensus 75 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~~------------~ 141 (248)
T 3asu_A 75 IDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHG-HIINIGSTAGSWP------------Y 141 (248)
T ss_dssp CCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSC------------C
T ss_pred CCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEEccchhccC------------C
Confidence 899999999752 1 11233446799999999988877765 34444 9999999877542 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEecccc-CCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVY-GPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.|. .+..... +... .......+ ....++
T Consensus 142 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~-----~~~~--~~~~~~~~-------~~~~~~ 207 (248)
T 3asu_A 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVR-----FKGD--DGKAEKTY-------QNTVAL 207 (248)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC------------------------------------CCB
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhc-----ccCc--hHHHHHHH-------hccCCC
Confidence 345789999999999999998775 8999999999999 4532110 0000 00000000 011246
Q ss_pred cHHHHHHHHHHHhhhcc
Q 042406 302 YIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~ 318 (424)
+.+|+|++++.++....
T Consensus 208 ~p~dvA~~v~~l~s~~~ 224 (248)
T 3asu_A 208 TPEDVSEAVWWVSTLPA 224 (248)
T ss_dssp CHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHHHHHhcCCc
Confidence 89999999999988644
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-24 Score=195.96 Aligned_cols=196 Identities=13% Similarity=0.071 Sum_probs=142.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
.+|+|+||||+|+||++++++|+++|++|++++|+.+..... ..+ ..++.++.+|++|.++++++++.+
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~----~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQAL----AAE---LEGALPLPGDVREEGDWARAVAAMEEAF 76 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----HHH---STTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----HHH---hhhceEEEecCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999964322211 111 127889999999999999888754
Q ss_pred -CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLE----TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~----a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||...... ..++.+..+++|+.|+.++++ .+++.+.+ +||++||...+..
T Consensus 77 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~------------ 143 (234)
T 2ehd_A 77 GELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGG-TIVNVGSLAGKNP------------ 143 (234)
T ss_dssp SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCE-EEEEECCTTTTSC------------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCc-EEEEECCchhcCC------------
Confidence 6799999999754321 223346799999999875554 45555544 9999999877642
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
..+...|+.+|.+.+.+++.++.++ |+++++||||.+.++.... . . . . + .++
T Consensus 144 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----------~-~-~--~-~----------~~~ 198 (234)
T 2ehd_A 144 FKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN----------T-P-G--Q-A----------WKL 198 (234)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC-----------------------------------------C
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccc----------c-c-c--c-c----------CCC
Confidence 1345789999999999999988763 8999999999998762210 0 0 0 0 0 157
Q ss_pred cHHHHHHHHHHHhhhcc
Q 042406 302 YIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~ 318 (424)
+.+|+|++++.++..+.
T Consensus 199 ~~~dvA~~~~~l~~~~~ 215 (234)
T 2ehd_A 199 KPEDVAQAVLFALEMPG 215 (234)
T ss_dssp CHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHhCCCc
Confidence 89999999999987654
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=202.78 Aligned_cols=205 Identities=16% Similarity=0.068 Sum_probs=155.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+..+++|+|+||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 26 ~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~v~~~~~~~ 102 (272)
T 1yb1_A 26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG---LGAKVHTFVVDCSNREDIYSSAKKV 102 (272)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHh---cCCeEEEEEeeCCCHHHHHHHHHHH
Confidence 4457899999999999999999999999999999999975443332222211 1357899999999999999888754
Q ss_pred -----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++. +.+.+ +||++||...+...
T Consensus 103 ~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~------- 174 (272)
T 1yb1_A 103 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHG-HIVTVASAAGHVSV------- 174 (272)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCCC-CCCH-------
T ss_pred HHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEechhhcCCC-------
Confidence 679999999986432 1223446799999999877766653 44544 99999998876421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh------CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY------GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~------~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.+...|+.||++.+.+++.++.++ |+++++|+||.|.++..... .
T Consensus 175 -----~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~-----~------------------- 225 (272)
T 1yb1_A 175 -----PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP-----S------------------- 225 (272)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT-----H-------------------
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc-----c-------------------
Confidence 234789999999999999998764 79999999999998743210 0
Q ss_pred ccccccccHHHHHHHHHHHhhhcc
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
.....+++++|+|++++.++....
T Consensus 226 ~~~~~~~~~~dva~~i~~~~~~~~ 249 (272)
T 1yb1_A 226 TSLGPTLEPEEVVNRLMHGILTEQ 249 (272)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHTTC
T ss_pred ccccCCCCHHHHHHHHHHHHHcCC
Confidence 011247889999999999998764
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=197.05 Aligned_cols=200 Identities=17% Similarity=0.117 Sum_probs=149.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
++|++|||||+|+||++++++|+++|++|++++|+.+..+...... ..++.++.+|++|.++++++++.+
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 75 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL------GNAVIGIVADLAHHEDVDVAFAAAVEWG 75 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH------GGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh------cCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999765433322211 125899999999999999988865
Q ss_pred -CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDP--QPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~--~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++..... +.+||++||...+... .
T Consensus 76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~------------~ 143 (235)
T 3l6e_A 76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGK------------A 143 (235)
T ss_dssp CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSC------------S
T ss_pred CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCC------------C
Confidence 6899999999854322 2334467999999999888887754211 1289999997665421 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
....|++||++.+.+++.++.++ |+++++|+||.|..+..... .. .. ...+...
T Consensus 144 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~----------~~---~~----------~~~~~~p 200 (235)
T 3l6e_A 144 NESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDNT----------DH---VD----------PSGFMTP 200 (235)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC----------------------------------CBCH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhcc----------CC---CC----------CcCCCCH
Confidence 45789999999999999999875 79999999999987632210 00 00 1137889
Q ss_pred HHHHHHHHHHhhhcc
Q 042406 304 DDIVKGCLAGLDTAK 318 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~ 318 (424)
+|+|++++.++..+.
T Consensus 201 edvA~~v~~l~~~~~ 215 (235)
T 3l6e_A 201 EDAAAYMLDALEARS 215 (235)
T ss_dssp HHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999997654
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=202.85 Aligned_cols=219 Identities=16% Similarity=0.114 Sum_probs=155.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++|++|||||+|+||++++++|+++|++|++++|+.+............ .....+.++.+|++|.++++++++.+
T Consensus 28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 106 (279)
T 1xg5_A 28 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSA-GYPGTLIPYRCDLSNEEDILSMFSAIR 106 (279)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhc-CCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 3478899999999999999999999999999999999754433322222111 11245889999999999999888754
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHH----HHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAG----FVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g----~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||...... ..++.+..+++|+.+ +.++++.+++.+. .++||++||...+...
T Consensus 107 ~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~------- 179 (279)
T 1xg5_A 107 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL------- 179 (279)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC-------
T ss_pred HhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccC-------
Confidence 6799999999754321 223346789999999 6677777777764 2499999998876421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
+..+...|+++|++.+.+++.++.+ .++++++|+||.|.++... ........... ...
T Consensus 180 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~----------~~~~~~~~~~~----~~~ 242 (279)
T 1xg5_A 180 ---PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAF----------KLHDKDPEKAA----ATY 242 (279)
T ss_dssp ---SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHH----------HHTTTCHHHHH----HHH
T ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhh----------hhcccChhHHh----hhc
Confidence 1134578999999999999988765 3799999999999886310 00000000000 000
Q ss_pred cccccccHHHHHHHHHHHhhhcc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
....+++++|+|++++.++..+.
T Consensus 243 ~~~~~~~~~dvA~~i~~l~~~~~ 265 (279)
T 1xg5_A 243 EQMKCLKPEDVAEAVIYVLSTPA 265 (279)
T ss_dssp C---CBCHHHHHHHHHHHHHSCT
T ss_pred ccccCCCHHHHHHHHHHHhcCCc
Confidence 11237889999999999998654
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=200.04 Aligned_cols=208 Identities=13% Similarity=0.122 Sum_probs=160.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
.+|+|+||||+|+||++++++|+++|++|++++|+.+.. ....+.+|++|.++++++++.+
T Consensus 21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~---------------~~~~~~~d~~d~~~v~~~~~~~~~~~ 85 (251)
T 3orf_A 21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPN---------------ADHSFTIKDSGEEEIKSVIEKINSKS 85 (251)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT---------------SSEEEECSCSSHHHHHHHHHHHHTTT
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc---------------cccceEEEeCCHHHHHHHHHHHHHHc
Confidence 368999999999999999999999999999999976432 1235789999999999988876
Q ss_pred -CccEEEEcccccCc-----hhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGV-----RYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
++|+||||||.... ....++.+..+++|+.|+.++++++..... ..+||++||...+.. ..
T Consensus 86 g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------------~~ 153 (251)
T 3orf_A 86 IKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNR------------TS 153 (251)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------CT
T ss_pred CCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccC------------CC
Confidence 68999999997532 222344567999999999999998876421 238999999877642 14
Q ss_pred CCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 227 PASLYAATKKAGEAIAHAYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~-----~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
+...|+.||++.+.+++.++.+ .|+++++|+||.|.++ +...... ......++
T Consensus 154 ~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~----------~~~~~~~------------~~~~~~~~ 211 (251)
T 3orf_A 154 GMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTP----------TNRKYMS------------DANFDDWT 211 (251)
T ss_dssp TBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCH----------HHHHHCT------------TSCGGGSB
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCc----------chhhhcc------------cccccccC
Confidence 4578999999999999999877 4799999999999875 2222211 12234588
Q ss_pred cHHHHHHHHHHHhhh-ccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 302 YIDDIVKGCLAGLDT-AKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
+++|+|++++.++.. .... ..|+.+++.+++..
T Consensus 212 ~~~dva~~i~~l~~~~~~~~----------~tG~~i~v~~g~~~ 245 (251)
T 3orf_A 212 PLSEVAEKLFEWSTNSDSRP----------TNGSLVKFETKSKV 245 (251)
T ss_dssp CHHHHHHHHHHHHHCGGGCC----------CTTCEEEEEEETTE
T ss_pred CHHHHHHHHHHHhcCccccC----------CcceEEEEecCCcc
Confidence 999999999999987 3321 34588998876543
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-24 Score=199.28 Aligned_cols=209 Identities=13% Similarity=0.025 Sum_probs=155.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHh-CCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKK-RGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.++|+|+||||+|+||++++++|++ +|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA---EGLSPRFHQLDIDDLQSIRALRDFLRK 78 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHh---cCCeeEEEECCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999 999999999975443332222221 1357899999999999999988855
Q ss_pred ---CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCC-CC----------
Q 042406 154 ---AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGV-NK---------- 214 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~-~~---------- 214 (424)
++|+||||||....... .++.+..+++|+.|+.++++++.+... .++||++||...+.. ..
T Consensus 79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~ 158 (276)
T 1wma_A 79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFR 158 (276)
T ss_dssp HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHH
T ss_pred hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcc
Confidence 67999999998643322 233467899999999999999987531 138999999777632 00
Q ss_pred CCCCCCCC------------------CCCCCCChHHHHHHHHHHHHHHHHHH-------hCCcEEEEEeccccCCCCCCC
Q 042406 215 KVPFSEKD------------------RTDQPASLYAATKKAGEAIAHAYNHI-------YGLSITGLRFFTVYGPWGRPD 269 (424)
Q Consensus 215 ~~~~~e~~------------------~~~~~~~~Y~~sK~~~e~~~~~~~~~-------~~i~~~~vrp~~v~G~~~~~~ 269 (424)
..++.|++ ....|...|+.||++.+.+++.++.+ .|+++++|+||.|.++....
T Consensus 159 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~- 237 (276)
T 1wma_A 159 SETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP- 237 (276)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT-
T ss_pred ccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc-
Confidence 00111111 01134589999999999999998866 48999999999998874321
Q ss_pred CcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 270 MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
..+.+++|+|++++.++..+
T Consensus 238 ----------------------------~~~~~~~~~a~~~~~l~~~~ 257 (276)
T 1wma_A 238 ----------------------------KATKSPEEGAETPVYLALLP 257 (276)
T ss_dssp ----------------------------TCSBCHHHHTHHHHHHHSCC
T ss_pred ----------------------------cccCChhHhhhhHhhhhcCc
Confidence 12678999999999998755
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-24 Score=199.04 Aligned_cols=212 Identities=14% Similarity=0.134 Sum_probs=147.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.++ |++|||||+|+||++++++|+++|++|++++|+.+.......... ...++.++.+|++|.++++++++.+
T Consensus 19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 93 (272)
T 2nwq_A 19 HMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELS----AKTRVLPLTLDVRDRAAMSAAVDNLPE 93 (272)
T ss_dssp --C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT----TTSCEEEEECCTTCHHHHHHHHHTCCG
T ss_pred CcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh----cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 345 899999999999999999999999999999997543332222111 1147899999999999999999876
Q ss_pred ---CccEEEEcccccCc--h---hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV--R---YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~--~---~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||.... . ...++.+..+++|+.|+.++++++ ++.+.+++||++||...+..
T Consensus 94 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~--------- 164 (272)
T 2nwq_A 94 EFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWP--------- 164 (272)
T ss_dssp GGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSC---------
T ss_pred HhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccC---------
Confidence 68999999998542 1 122334678999999987776655 34443238999999877642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++..... +... .......+ . ..
T Consensus 165 ---~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-----~~~~--~~~~~~~~----~---~~ 227 (272)
T 2nwq_A 165 ---YPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVR-----FGGD--QARYDKTY----A---GA 227 (272)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC----------------------------------CC
T ss_pred ---CCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcc-----cccc--hHHHHHhh----c---cC
Confidence 1345789999999999999998764 89999999999998743210 0000 00000000 0 01
Q ss_pred ccccHHHHHHHHHHHhhhcc
Q 042406 299 DFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~ 318 (424)
.++..+|+|++++.++....
T Consensus 228 ~~~~pedvA~~v~~l~s~~~ 247 (272)
T 2nwq_A 228 HPIQPEDIAETIFWIMNQPA 247 (272)
T ss_dssp CCBCHHHHHHHHHHHHTSCT
T ss_pred CCCCHHHHHHHHHHHhCCCc
Confidence 25789999999999987644
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=198.36 Aligned_cols=209 Identities=14% Similarity=0.112 Sum_probs=156.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
++|+++||||+|+||++++++|+++|++|++++|+.+... ..+.++.+|++|.++++++++.+
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 68 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------------DSNILVDGNKNWTEQEQSILEQTASSL 68 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-------------cccEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999764321 13567899999999998887742
Q ss_pred ---CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||..... ...++.+..+++|+.|+.++++++.+... ..+||++||...+..
T Consensus 69 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~------------ 136 (236)
T 1ooe_A 69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGP------------ 136 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------
T ss_pred CCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccC------------
Confidence 679999999975422 22334467899999999999998876421 238999999877642
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~-----~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|+.||.+.+.+++.++.++ |+++++|+||.|.++ +....... .....
T Consensus 137 ~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~----------~~~~~~~~------------~~~~~ 194 (236)
T 1ooe_A 137 TPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP----------MNRKWMPN------------ADHSS 194 (236)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH----------HHHHHSTT------------CCGGG
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCc----------chhhcCCC------------ccccc
Confidence 1445789999999999999998765 499999999999886 11111111 11234
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
++..+|+|++++.++..+.... ..|+.+++.++.
T Consensus 195 ~~~~~dvA~~i~~~l~s~~~~~---------~~G~~~~v~gg~ 228 (236)
T 1ooe_A 195 WTPLSFISEHLLKWTTETSSRP---------SSGALLKITTEN 228 (236)
T ss_dssp CBCHHHHHHHHHHHHHCGGGCC---------CTTCEEEEEEET
T ss_pred cCCHHHHHHHHHHHHcCCCccc---------ccccEEEEecCC
Confidence 6788999999997764433211 334788887654
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-24 Score=194.43 Aligned_cols=200 Identities=14% Similarity=0.109 Sum_probs=147.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--Ccc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--AFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--~~d 156 (424)
+|+||||||+|+||++++++|+++|++|++++|+.+..... ... . ..++.++.+|++|.++++++++++ .+|
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~----~~~-~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~d 74 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTV----TNC-L-SNNVGYRARDLASHQEVEQLFEQLDSIPS 74 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH----HHT-C-SSCCCEEECCTTCHHHHHHHHHSCSSCCS
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHH-H-hhccCeEeecCCCHHHHHHHHHHHhhcCC
Confidence 46799999999999999999999999999999965432221 111 1 457889999999999999999876 369
Q ss_pred EEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEecCCcccCCCCCCCCCCCCCCCCCCCh
Q 042406 157 HVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDP--QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASL 230 (424)
Q Consensus 157 ~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~--~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~ 230 (424)
+||||||...... ..++.+..+++|+.|+.++++++..... +.+||++||...+.. ..+...
T Consensus 75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~------------~~~~~~ 142 (230)
T 3guy_A 75 TVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQP------------KAQEST 142 (230)
T ss_dssp EEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSC------------CTTCHH
T ss_pred EEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCC------------CCCCch
Confidence 9999999764322 2233467899999999999888765421 128999999877642 145578
Q ss_pred HHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHH
Q 042406 231 YAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIV 307 (424)
Q Consensus 231 Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 307 (424)
|++||++.+.+++.++.++ |+++++|+||.|..+.... ... . .....+.+++|+|
T Consensus 143 Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----------~~~--~----------~~~~~~~~~~dvA 200 (230)
T 3guy_A 143 YCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWET----------SGK--S----------LDTSSFMSAEDAA 200 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC--------------------------------------CCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHh----------cCC--C----------CCcccCCCHHHHH
Confidence 9999999999999999886 8999999999998763211 100 0 1123478999999
Q ss_pred HHHHHHhhhcc
Q 042406 308 KGCLAGLDTAK 318 (424)
Q Consensus 308 ~a~~~~~~~~~ 318 (424)
++++.++..+.
T Consensus 201 ~~i~~l~~~~~ 211 (230)
T 3guy_A 201 LMIHGALANIG 211 (230)
T ss_dssp HHHHHHCCEET
T ss_pred HHHHHHHhCcC
Confidence 99999887654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=189.03 Aligned_cols=201 Identities=13% Similarity=0.148 Sum_probs=146.8
Q ss_pred CeEEEEcCCChhHHHHHHHHH-hCCCeEEEEeCCCC-chhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALK-KRGDGVLGLDNFNN-YYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~-~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|+|+||||+|+||++++++|+ ++|++|++++|+.+ ...... ....++.++.+|++|.+++.++++++ |+
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~-------~~~~~~~~~~~D~~d~~~~~~~~~~~--d~ 76 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI-------IDHERVTVIEGSFQNPGXLEQAVTNA--EV 76 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH-------HTSTTEEEEECCTTCHHHHHHHHTTC--SE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc-------cCCCceEEEECCCCCHHHHHHHHcCC--CE
Confidence 569999999999999999999 89999999999643 221110 13468999999999999999999966 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCC-hHHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPAS-LYAATKK 236 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~-~Y~~sK~ 236 (424)
||||||.. |+. +.++++++++.+.+ +||++||.++|+.... +..+.. ..... .|+.+|.
T Consensus 77 vv~~ag~~---------------n~~-~~~~~~~~~~~~~~-~iv~iSs~~~~~~~~~-~~~~~~--~~~~~~~y~~~K~ 136 (221)
T 3r6d_A 77 VFVGAMES---------------GSD-MASIVKALSRXNIR-RVIGVSMAGLSGEFPV-ALEKWT--FDNLPISYVQGER 136 (221)
T ss_dssp EEESCCCC---------------HHH-HHHHHHHHHHTTCC-EEEEEEETTTTSCSCH-HHHHHH--HHTSCHHHHHHHH
T ss_pred EEEcCCCC---------------Chh-HHHHHHHHHhcCCC-eEEEEeeceecCCCCc-cccccc--ccccccHHHHHHH
Confidence 99999852 444 89999999998876 9999999999874221 000000 01123 7999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHh--
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGL-- 314 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~-- 314 (424)
++|.+++. .++++++||||.++++..... ..... ........+++.+|+|++++.++
T Consensus 137 ~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~---------------~~~~~--~~~~~~~~~~~~~dvA~~~~~l~~~ 195 (221)
T 3r6d_A 137 QARNVLRE----SNLNYTILRLTWLYNDPEXTD---------------YELIP--EGAQFNDAQVSREAVVKAIFDILHA 195 (221)
T ss_dssp HHHHHHHH----SCSEEEEEEECEEECCTTCCC---------------CEEEC--TTSCCCCCEEEHHHHHHHHHHHHTC
T ss_pred HHHHHHHh----CCCCEEEEechhhcCCCCCcc---------------eeecc--CCccCCCceeeHHHHHHHHHHHHHh
Confidence 99988764 599999999999999732211 11110 11111224899999999999999
Q ss_pred hhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 315 DTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
.++... .++.+.+.++
T Consensus 196 ~~~~~~-----------~~~~~~i~~~ 211 (221)
T 3r6d_A 196 ADETPF-----------HRTSIGVGEP 211 (221)
T ss_dssp SCCGGG-----------TTEEEEEECT
T ss_pred cChhhh-----------hcceeeecCC
Confidence 665532 2267777754
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-24 Score=199.15 Aligned_cols=229 Identities=13% Similarity=0.097 Sum_probs=162.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|++|||||+|+||++++++|+++|++|++++|+.+...... .. ...++.++.+|++|.++++++++.+
T Consensus 2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~----~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (281)
T 3zv4_A 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELE----VA--HGGNAVGVVGDVRSLQDQKRAAERCLA 75 (281)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----HH--TBTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHH----HH--cCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999654332211 11 2457899999999999999888766
Q ss_pred ---CccEEEEcccccCchhh---------ccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA---------MQNPNSYVESNIAGFVNLLETCKSSD--PQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~---------~~~~~~~~~~N~~g~~~ll~a~~~~~--~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|+||||||+...... .++.+..+++|+.|+.++++++.... .+.+||++||...+...
T Consensus 76 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 149 (281)
T 3zv4_A 76 AFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPN------ 149 (281)
T ss_dssp HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSS------
T ss_pred hcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCC------
Confidence 78999999998542111 11245689999999998888764321 11389999997765421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCc-H-----H--HHHHHHHcCCceeEEe
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDMA-Y-----F--FFTRDIIRGKRITVYE 289 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~-~-----~--~~~~~~~~~~~~~~~~ 289 (424)
.....|++||++.+.+++.++.++ ++++++|+||.|..+....... . . .+...+....+
T Consensus 150 ------~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----- 218 (281)
T 3zv4_A 150 ------GGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLP----- 218 (281)
T ss_dssp ------SSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCT-----
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCC-----
Confidence 345789999999999999999875 4999999999998874321100 0 0 01122222211
Q ss_pred cCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 290 APDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 290 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
...+...+|+|.+++.++..+.... ..|+++++.+|..
T Consensus 219 -------~~r~~~pedvA~~v~fL~s~~~~~~---------itG~~i~vdGG~~ 256 (281)
T 3zv4_A 219 -------IGRMPALEEYTGAYVFFATRGDSLP---------ATGALLNYDGGMG 256 (281)
T ss_dssp -------TSSCCCGGGGSHHHHHHHSTTTSTT---------CSSCEEEESSSGG
T ss_pred -------CCCCCCHHHHHHHHHHhhccccccc---------ccCcEEEECCCCc
Confidence 1236778999999999887333211 3458999988753
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-25 Score=202.70 Aligned_cols=225 Identities=12% Similarity=0.039 Sum_probs=153.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--Ccc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--AFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--~~d 156 (424)
+|+|+||||+|+||++++++|+++|++|++++|+.+.... . +.+|++|.+++++++++. ++|
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---------------~-~~~Dl~~~~~v~~~~~~~~~~id 64 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA---------------D-LSTAEGRKQAIADVLAKCSKGMD 64 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------C-TTSHHHHHHHHHHHHTTCTTCCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc---------------c-cccCCCCHHHHHHHHHHhCCCCC
Confidence 3689999999999999999999999999999996543211 1 568999999999999875 679
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC-----C------
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSE-----K------ 221 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e-----~------ 221 (424)
+||||||.... ....+..+++|+.|+.++++++. +.+. ++||++||...+......+..+ .
T Consensus 65 ~lv~~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (257)
T 1fjh_A 65 GLVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQ-PAAVVISSVASAHLAFDKNPLALALEAGEEAKAR 140 (257)
T ss_dssp EEEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHH
T ss_pred EEEECCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEECChhhhccccccchhhhhhcccchhhhh
Confidence 99999997541 23478899999999999888875 3343 4999999988873211000000 0
Q ss_pred -----CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCC
Q 042406 222 -----DRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 222 -----~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
..+..+...|+.||++.+.+++.++.+ .|+++++|+||.|.++..... ............ +
T Consensus 141 ~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~-----~----- 209 (257)
T 1fjh_A 141 AIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAG-LQDPRYGESIAK-----F----- 209 (257)
T ss_dssp HHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------------C-----
T ss_pred hhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhh-ccchhHHHHHHh-----c-----
Confidence 011124578999999999999998876 489999999999998743211 000000000000 0
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
......+++++|+|++++.++..+... ..|+.|++.+|...
T Consensus 210 ~~~~~~~~~~~dvA~~~~~l~~~~~~~----------~tG~~~~vdgG~~~ 250 (257)
T 1fjh_A 210 VPPMGRRAEPSEMASVIAFLMSPAASY----------VHGAQIVIDGGIDA 250 (257)
T ss_dssp CCSTTSCCCTHHHHHHHHHHTSGGGTT----------CCSCEEEESTTHHH
T ss_pred ccccCCCCCHHHHHHHHHHHhCchhcC----------CcCCEEEECCCccc
Confidence 011124789999999999998765321 34589999887543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-24 Score=193.02 Aligned_cols=204 Identities=11% Similarity=-0.000 Sum_probs=140.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
+.+|+||||||+|+||++|+++|+++| ++|++++|+.+... .....++.++.+|++|.+++.++++++
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~---------~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 89 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIH---------KPYPTNSQIIMGDVLNHAALKQAMQGQ-- 89 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSC---------SSCCTTEEEEECCTTCHHHHHHHHTTC--
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhc---------ccccCCcEEEEecCCCHHHHHHHhcCC--
Confidence 456889999999999999999999999 89999999654321 123357999999999999999999977
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATK 235 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK 235 (424)
|+|||||+.... ...+.+++++|++.+.+ +||++||.++|+............ ....+...+
T Consensus 90 D~vv~~a~~~~~--------------~~~~~~~~~~~~~~~~~-~iV~iSS~~~~~~~~~~~~~~~~~---~~~~~~~~~ 151 (236)
T 3qvo_A 90 DIVYANLTGEDL--------------DIQANSVIAAMKACDVK-RLIFVLSLGIYDEVPGKFVEWNNA---VIGEPLKPF 151 (236)
T ss_dssp SEEEEECCSTTH--------------HHHHHHHHHHHHHTTCC-EEEEECCCCC-------------------CGGGHHH
T ss_pred CEEEEcCCCCch--------------hHHHHHHHHHHHHcCCC-EEEEEecceecCCCCcccccchhh---cccchHHHH
Confidence 999999985221 13467899999999876 999999999998643322111110 111222334
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhh
Q 042406 236 KAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315 (424)
Q Consensus 236 ~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 315 (424)
..+|..+ +..|+++++||||.++++.... ..... ........+++++|+|++++.++.
T Consensus 152 ~~~~~~l----~~~gi~~~~vrPg~i~~~~~~~----------------~~~~~--~~~~~~~~~i~~~DvA~~i~~ll~ 209 (236)
T 3qvo_A 152 RRAADAI----EASGLEYTILRPAWLTDEDIID----------------YELTS--RNEPFKGTIVSRKSVAALITDIID 209 (236)
T ss_dssp HHHHHHH----HTSCSEEEEEEECEEECCSCCC----------------CEEEC--TTSCCSCSEEEHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHCCCCEEEEeCCcccCCCCcc----------------eEEec--cCCCCCCcEECHHHHHHHHHHHHc
Confidence 4444433 2459999999999999874321 11110 111112358999999999999998
Q ss_pred hccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 316 TAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
++... .+++|+++++.
T Consensus 210 ~~~~~-----------~g~~~~i~~~~ 225 (236)
T 3qvo_A 210 KPEKH-----------IGENIGINQPG 225 (236)
T ss_dssp STTTT-----------TTEEEEEECSS
T ss_pred Ccccc-----------cCeeEEecCCC
Confidence 87632 23899999865
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=193.75 Aligned_cols=221 Identities=13% Similarity=0.046 Sum_probs=158.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.+++||++|||||+++||+++++.|+++|++|++.+|+... ......++++|++|+++++++++.+
T Consensus 7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~-------------~~~~~~~~~~Dv~~~~~v~~~~~~~~ 73 (261)
T 4h15_A 7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPE-------------GLPEELFVEADLTTKEGCAIVAEATR 73 (261)
T ss_dssp CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCT-------------TSCTTTEEECCTTSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchh-------------CCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999996431 1123457899999999998888765
Q ss_pred ----CccEEEEcccccCc------hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGV------RYAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|++|||||.... ....++.+..+++|+.|+.++.+++ ++.+.+ +||++||...+-..
T Consensus 74 ~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G-~Iv~isS~~~~~~~------ 146 (261)
T 4h15_A 74 QRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSG-VVVHVTSIQRVLPL------ 146 (261)
T ss_dssp HHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC------
T ss_pred HHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCc-eEEEEEehhhccCC------
Confidence 68999999997432 1123344679999999987776654 444544 89999997654311
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC-----------C-CcHHHHHHHHHcCCc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP-----------D-MAYFFFTRDIIRGKR 284 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~-----------~-~~~~~~~~~~~~~~~ 284 (424)
......|++||.+.+.+++.++.++ ||++++|.||.|-.|.... + .....+.......-|
T Consensus 147 -----~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 221 (261)
T 4h15_A 147 -----PESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIP 221 (261)
T ss_dssp -----TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCT
T ss_pred -----CCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCC
Confidence 0234789999999999999999875 8999999999997752110 0 000011111111111
Q ss_pred eeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 285 ITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 285 ~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+ .-+...+|+|.+++.++...... ..|+++.|.+|-
T Consensus 222 l------------gR~g~peevA~~v~fLaS~~a~~----------itG~~i~VDGG~ 257 (261)
T 4h15_A 222 L------------GRPAKPEEVANLIAFLASDRAAS----------ITGAEYTIDGGT 257 (261)
T ss_dssp T------------SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred C------------CCCcCHHHHHHHHHHHhCchhcC----------ccCcEEEECCcC
Confidence 1 11667899999999888655432 455899998875
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-24 Score=194.75 Aligned_cols=208 Identities=16% Similarity=0.143 Sum_probs=155.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccC--CCHHHHHHHhh
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI--NDKSLLDKIFN 151 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~v~~~~~ 151 (424)
+..+++|+++||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|+ +|.+++.++++
T Consensus 9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~d~d~~~~~~~~~~~~ 86 (247)
T 3i1j_A 9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKS--AGQPQPLIIALNLENATAQQYRELAA 86 (247)
T ss_dssp TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--TTSCCCEEEECCTTTCCHHHHHHHHH
T ss_pred CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHh--cCCCCceEEEeccccCCHHHHHHHHH
Confidence 3457899999999999999999999999999999999976554443333222 2235677888887 99999988887
Q ss_pred cc-----CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCC
Q 042406 152 VV-----AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVP 217 (424)
Q Consensus 152 ~~-----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~ 217 (424)
.+ ++|+||||||..... ...++.+..+++|+.|+.++++++. +.+. .+||++||...+..
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~----- 160 (247)
T 3i1j_A 87 RVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSED-ASIAFTSSSVGRKG----- 160 (247)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-EEEEEECCGGGTSC-----
T ss_pred HHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CeEEEEcchhhcCC-----
Confidence 65 689999999985321 1223446789999999999988873 3443 38999999776542
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCC
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHIY----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
..+...|+.||++.+.+++.++.++ ++++++|+||.|..+ +.......
T Consensus 161 -------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~----------~~~~~~~~----------- 212 (247)
T 3i1j_A 161 -------RANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTG----------MRAQAYPD----------- 212 (247)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSH----------HHHHHSTT-----------
T ss_pred -------CCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCc----------cchhcccc-----------
Confidence 1445789999999999999998774 799999999998765 22221111
Q ss_pred CccccccccHHHHHHHHHHHhhhcc
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
.....+...+|+|++++.++....
T Consensus 213 -~~~~~~~~p~dva~~~~~l~s~~~ 236 (247)
T 3i1j_A 213 -ENPLNNPAPEDIMPVYLYLMGPDS 236 (247)
T ss_dssp -SCGGGSCCGGGGTHHHHHHHSGGG
T ss_pred -cCccCCCCHHHHHHHHHHHhCchh
Confidence 112236678999999999887654
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=196.84 Aligned_cols=212 Identities=14% Similarity=0.102 Sum_probs=155.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhh---hHHHHHhh-hhccCCeEEEEccCCCHHHHHHHh
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET---SLKKARKG-LLERAGVFVIDADINDKSLLDKIF 150 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~ 150 (424)
+++++|+++||||+|+||++++++|+++|++|++++|+.+..+. .......+ .....++.++++|++|.+++++++
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 84 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAV 84 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999999999999999999998764222 11111111 112457899999999999999998
Q ss_pred hcc-----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCCcccCCCCCCCC
Q 042406 151 NVV-----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSD---PQPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 151 ~~~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~---~~~~~v~~SS~~vyg~~~~~~~ 218 (424)
+.+ ++|+||||||...... ..++.+..+++|+.|+.++++++.... ...+||++||...+...
T Consensus 85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----- 159 (285)
T 3sc4_A 85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPK----- 159 (285)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGG-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCC-----
Confidence 865 7899999999865422 222345788999999999999886552 12499999997665421
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEecc-ccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFT-VYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~-v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..+...|++||++.+.+++.++.+ .|+++++|+||. +-.+ +.........
T Consensus 160 ------~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t~----------~~~~~~~~~~---------- 213 (285)
T 3sc4_A 160 ------WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVATA----------AVQNLLGGDE---------- 213 (285)
T ss_dssp ------GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCCH----------HHHHHHTSCC----------
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCccccH----------HHHhhccccc----------
Confidence 023478999999999999999987 489999999994 4332 2333332211
Q ss_pred ccccccccHHHHHHHHHHHhhhcc
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
....+...+|+|++++.++....
T Consensus 214 -~~~r~~~pedvA~~~~~l~s~~~ 236 (285)
T 3sc4_A 214 -AMARSRKPEVYADAAYVVLNKPS 236 (285)
T ss_dssp -CCTTCBCTHHHHHHHHHHHTSCT
T ss_pred -cccCCCCHHHHHHHHHHHhCCcc
Confidence 11236788999999999987664
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=196.71 Aligned_cols=210 Identities=14% Similarity=0.087 Sum_probs=156.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+.++|+++||||+|+||++++++|+++|++|++++|+.+... ....++.+|++|.++++++++.+
T Consensus 4 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~v~~~~~~~~~ 70 (241)
T 1dhr_A 4 SGEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-------------SASVIVKMTDSFTEQADQVTAEVGK 70 (241)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-------------SEEEECCCCSCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-------------CCcEEEEcCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999764321 13577899999999998888742
Q ss_pred -----CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||..... ...++.+..+++|+.++.++++++.+... ..+||++||...+...
T Consensus 71 ~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 141 (241)
T 1dhr_A 71 LLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT--------- 141 (241)
T ss_dssp HHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC---------
T ss_pred HhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCC---------
Confidence 679999999975422 22334467899999999999998876421 1389999998776421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.+...|+.||.+.+.+++.++.++ |+++++|+||.|-++ +....... ...
T Consensus 142 ---~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~----------~~~~~~~~------------~~~ 196 (241)
T 1dhr_A 142 ---PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP----------MNRKSMPE------------ADF 196 (241)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH----------HHHHHSTT------------SCG
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCc----------cccccCcc------------hhh
Confidence 345789999999999999998764 599999999998765 11111111 112
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..++..+|+|++++.++...... ..|+.+.+.++.
T Consensus 197 ~~~~~~~~vA~~v~~l~~~~~~~----------~~G~~~~v~g~~ 231 (241)
T 1dhr_A 197 SSWTPLEFLVETFHDWITGNKRP----------NSGSLIQVVTTD 231 (241)
T ss_dssp GGSEEHHHHHHHHHHHHTTTTCC----------CTTCEEEEEEET
T ss_pred ccCCCHHHHHHHHHHHhcCCCcC----------ccceEEEEeCCC
Confidence 34677899999999888654322 344788887644
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=200.57 Aligned_cols=211 Identities=13% Similarity=0.101 Sum_probs=155.8
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhh---HHHHHhh-hhccCCeEEEEccCCCHHHHHHH
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETS---LKKARKG-LLERAGVFVIDADINDKSLLDKI 149 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~ 149 (424)
..++++|++|||||+|+||++++++|+++|++|++++|+.+..... ......+ .....++.++.+|++|.++++++
T Consensus 40 ~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~ 119 (346)
T 3kvo_A 40 TGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAA 119 (346)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 3467899999999999999999999999999999999987653210 1111111 11235789999999999999999
Q ss_pred hhcc-----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCC
Q 042406 150 FNVV-----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKV 216 (424)
Q Consensus 150 ~~~~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~ 216 (424)
++.+ ++|+||||||...... ..++.+..+++|+.|+.++++++.. .+. .+||++||...+...
T Consensus 120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~-g~IV~iSS~~~~~~~--- 195 (346)
T 3kvo_A 120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKV-AHILNISPPLNLNPV--- 195 (346)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSS-CEEEEECCCCCCCGG---
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCC-CEEEEECCHHHcCCC---
Confidence 8865 7899999999865322 1233467899999999999888743 343 399999997766421
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 217 PFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 217 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
...+...|+.||++.+.+++.++.++ |+++++|+||.+... .+.+.+ .+.
T Consensus 196 -------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T---------~~~~~~-~~~----------- 247 (346)
T 3kvo_A 196 -------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT---------AAMDML-GGP----------- 247 (346)
T ss_dssp -------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC---------HHHHHH-CC------------
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc---------HHHHhh-ccc-----------
Confidence 01345789999999999999999875 799999999964332 122222 111
Q ss_pred ccccccccHHHHHHHHHHHhhh
Q 042406 295 SVARDFTYIDDIVKGCLAGLDT 316 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~ 316 (424)
.....+..++|+|++++.++..
T Consensus 248 ~~~~r~~~pedvA~~v~~L~s~ 269 (346)
T 3kvo_A 248 GIESQCRKVDIIADAAYSIFQK 269 (346)
T ss_dssp -CGGGCBCTHHHHHHHHHHHTS
T ss_pred cccccCCCHHHHHHHHHHHHhc
Confidence 1123467889999999999987
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=194.83 Aligned_cols=208 Identities=16% Similarity=0.153 Sum_probs=154.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+..+++|+|+||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|++|.++++++++.+
T Consensus 23 ~~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~v~~~~~~~ 100 (286)
T 1xu9_A 23 PEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLE--LGAASAHYIAGTMEDMTFAEQFVAQA 100 (286)
T ss_dssp GGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HTCSEEEEEECCTTCHHHHHHHHHHH
T ss_pred hhhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--hCCCceEEEeCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999976544332222111 12246899999999999999888754
Q ss_pred -----CccEEEEc-ccccCchhh---ccChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 -----AFTHVMHL-AAQAGVRYA---MQNPNSYVESNIAGFVNLLETCKSS---DPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 -----~~d~vi~~-Ag~~~~~~~---~~~~~~~~~~N~~g~~~ll~a~~~~---~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+|||| ||....... .++.+..+++|+.|+.++++++... +. ++||++||.+.+..
T Consensus 101 ~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~--------- 170 (286)
T 1xu9_A 101 GKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN-GSIVVVSSLAGKVA--------- 170 (286)
T ss_dssp HHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEGGGTSC---------
T ss_pred HHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCC-CEEEEECCcccccC---------
Confidence 67999999 566433211 2233578999999999988877442 22 39999999877642
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
..+...|+.||++.+.+++.++.++ ++++++++||.|.++ +...... +..
T Consensus 171 ---~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~----------~~~~~~~------------~~~ 225 (286)
T 1xu9_A 171 ---YPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE----------TAMKAVS------------GIV 225 (286)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH----------HHHHHSC------------GGG
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCCh----------hHHHhcc------------ccc
Confidence 1346789999999999999988765 899999999999765 1111111 112
Q ss_pred ccccccHHHHHHHHHHHhhhcc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
...+++.+|+|++++.+++...
T Consensus 226 ~~~~~~~~~vA~~i~~~~~~~~ 247 (286)
T 1xu9_A 226 HMQAAPKEECALEIIKGGALRQ 247 (286)
T ss_dssp GGGCBCHHHHHHHHHHHHHTTC
T ss_pred cCCCCCHHHHHHHHHHHHhcCC
Confidence 2357899999999999887654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=191.96 Aligned_cols=213 Identities=15% Similarity=0.115 Sum_probs=155.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+|+||++++++|+++|++|++++|+.+..+........ ...++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 80 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTA---AGAKVHVLELDVADRQGVDAAVASTVE 80 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999975443332222211 1357899999999999999888754
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++++++.. .+ .+||++||...+..
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~---------- 148 (247)
T 2jah_A 81 ALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSSIAGRVN---------- 148 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTCC----------
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEccHHhcCC----------
Confidence 6799999999754321 2223467899999999988887643 34 39999999876542
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
..+...|++||++.+.+++.++.++ |+++++|+||.|.++....... ... ....... + ....
T Consensus 149 --~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~-~~~~~~~-------~----~~~~ 213 (247)
T 2jah_A 149 --VRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITH-TAT-KEMYEQR-------I----SQIR 213 (247)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCC-HHH-HHHHHHH-------T----TTSC
T ss_pred --CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccc-hhh-HHHHHhc-------c----cccC
Confidence 1345789999999999999998764 8999999999998874321100 111 1111100 0 0111
Q ss_pred cccHHHHHHHHHHHhhhcc
Q 042406 300 FTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~ 318 (424)
+++.+|+|++++.++..+.
T Consensus 214 ~~~pedvA~~v~~l~s~~~ 232 (247)
T 2jah_A 214 KLQAQDIAEAVRYAVTAPH 232 (247)
T ss_dssp CBCHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHhCCCc
Confidence 5889999999999987654
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=196.36 Aligned_cols=228 Identities=11% Similarity=0.037 Sum_probs=161.0
Q ss_pred CCCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGA--AGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg--~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+++|+++|||| +|+||++++++|+++|++|++++|+.+.. ....... . ..++.++.+|++|.++++++++.+
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~-~-~~~~~~~~~Dv~~~~~v~~~~~~~ 78 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL---IQRITDR-L-PAKAPLLELDVQNEEHLASLAGRV 78 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHH---HHHHHTT-S-SSCCCEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHH---HHHHHHh-c-CCCceEEEccCCCHHHHHHHHHHH
Confidence 467899999999 99999999999999999999999965421 1111111 1 246889999999999999988854
Q ss_pred --------CccEEEEcccccCc------h---hhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCC
Q 042406 154 --------AFTHVMHLAAQAGV------R---YAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKK 215 (424)
Q Consensus 154 --------~~d~vi~~Ag~~~~------~---~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~ 215 (424)
++|+||||||.... . ...++.+..+++|+.|+.++++++..... ..+||++||.+.++.
T Consensus 79 ~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~~--- 155 (269)
T 2h7i_A 79 TEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAM--- 155 (269)
T ss_dssp HHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCC---
T ss_pred HHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCcccccc---
Confidence 67999999997641 1 12233456899999999999999876421 138999999765431
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC------CCcH----HHHHHHHHcC
Q 042406 216 VPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP------DMAY----FFFTRDIIRG 282 (424)
Q Consensus 216 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~------~~~~----~~~~~~~~~~ 282 (424)
.....|++||++.+.+++.++.++ |+++++|+||.|..+.... .... ..+...+...
T Consensus 156 ----------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (269)
T 2h7i_A 156 ----------PAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQR 225 (269)
T ss_dssp ----------TTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHH
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhcc
Confidence 345789999999999999998775 8999999999997752100 0000 0001111111
Q ss_pred CceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 283 KRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+. + +.+...+|+|++++.++...... ..|+++++.+|.
T Consensus 226 ~p~--------~---rr~~~p~dvA~~v~~L~s~~~~~----------itG~~i~vdGG~ 264 (269)
T 2h7i_A 226 API--------G---WNMKDATPVAKTVCALLSDWLPA----------TTGDIIYADGGA 264 (269)
T ss_dssp CTT--------C---CCTTCCHHHHHHHHHHHSSSCTT----------CCSEEEEESTTG
T ss_pred CCc--------c---cCCCCHHHHHHHHHHHhCchhcc----------CcceEEEecCCe
Confidence 111 0 02567899999999988654322 445899998774
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-23 Score=194.77 Aligned_cols=213 Identities=15% Similarity=0.069 Sum_probs=151.4
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCH-HHHHHHhhc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDK-SLLDKIFNV 152 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~v~~~~~~ 152 (424)
+.+.++|+||||||+|+||++++++|+++|++|++++|+.+........... ....++.++.+|++|. ++++++++.
T Consensus 7 ~~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dl~~~~~~v~~~~~~ 84 (311)
T 3o26_A 7 NTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKN--SNHENVVFHQLDVTDPIATMSSLADF 84 (311)
T ss_dssp -----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT--TTCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred CccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--cCCCceEEEEccCCCcHHHHHHHHHH
Confidence 3456789999999999999999999999999999999987655444333322 2335799999999998 888887774
Q ss_pred c-----CccEEEEcccccCch----------------------------------hhccChHHHHHHHHHHHHHHHHHHH
Q 042406 153 V-----AFTHVMHLAAQAGVR----------------------------------YAMQNPNSYVESNIAGFVNLLETCK 193 (424)
Q Consensus 153 ~-----~~d~vi~~Ag~~~~~----------------------------------~~~~~~~~~~~~N~~g~~~ll~a~~ 193 (424)
+ ++|+||||||+.... ...++.+..+++|+.|+.++++++.
T Consensus 85 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 164 (311)
T 3o26_A 85 IKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLI 164 (311)
T ss_dssp HHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhh
Confidence 4 689999999986421 1122335679999999888887764
Q ss_pred h----cCCCCeEEEecCCcccCCCCCC-------------------------------CCCCCCCCCCCCChHHHHHHHH
Q 042406 194 S----SDPQPAIVWASSSSVYGVNKKV-------------------------------PFSEKDRTDQPASLYAATKKAG 238 (424)
Q Consensus 194 ~----~~~~~~~v~~SS~~vyg~~~~~-------------------------------~~~e~~~~~~~~~~Y~~sK~~~ 238 (424)
. .+. .+||++||...+...... ...+......+...|++||++.
T Consensus 165 ~~l~~~~~-~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~ 243 (311)
T 3o26_A 165 PLLQLSDS-PRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACL 243 (311)
T ss_dssp HHHTTSSS-CEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHH
T ss_pred HhhccCCC-CeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHH
Confidence 3 333 499999997664321100 0001111113457899999999
Q ss_pred HHHHHHHHHHh-CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 239 EAIAHAYNHIY-GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 239 e~~~~~~~~~~-~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
+.+++.++.++ ++++++|+||.|.++.... ......++.++.++.++..+
T Consensus 244 ~~~~~~la~e~~~i~v~~v~PG~v~T~~~~~-----------------------------~~~~~~~~~a~~~~~~~~~~ 294 (311)
T 3o26_A 244 NAYTRVLANKIPKFQVNCVCPGLVKTEMNYG-----------------------------IGNYTAEEGAEHVVRIALFP 294 (311)
T ss_dssp HHHHHHHHHHCTTSEEEEECCCSBCSGGGTT-----------------------------CCSBCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhcCCceEEEecCCceecCCcCC-----------------------------CCCCCHHHHHHHHHHHHhCC
Confidence 99999999886 7999999999998762211 01246789999999887765
Q ss_pred c
Q 042406 318 K 318 (424)
Q Consensus 318 ~ 318 (424)
.
T Consensus 295 ~ 295 (311)
T 3o26_A 295 D 295 (311)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-23 Score=191.04 Aligned_cols=209 Identities=14% Similarity=0.122 Sum_probs=152.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhh---HHHHHhh-hhccCCeEEEEccCCCHHHHHHHhh
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETS---LKKARKG-LLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
++++|+++||||+|+||++++++|+++|++|++++|+.+..+.. ....... .....++.++.+|++|.++++++++
T Consensus 3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 82 (274)
T 3e03_A 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVA 82 (274)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 46889999999999999999999999999999999987642211 1111111 1124578999999999999999888
Q ss_pred cc-----CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCC
Q 042406 152 VV-----AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 152 ~~-----~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~ 218 (424)
.+ ++|+||||||....... .++.+..+++|+.|+.++++++.. .+. .+||++||...+....
T Consensus 83 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~~~---- 157 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPN-PHILTLAPPPSLNPAW---- 157 (274)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSS-CEEEECCCCCCCCHHH----
T ss_pred HHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCC-ceEEEECChHhcCCCC----
Confidence 65 68999999998643222 223457899999999988887643 333 4999999977654210
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEecc-ccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFT-VYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~-v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
..+...|++||++.+.+++.++.++ |+++++|+||. +-.+.. ....+
T Consensus 158 ------~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~-----------~~~~~------------ 208 (274)
T 3e03_A 158 ------WGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAI-----------NMLPG------------ 208 (274)
T ss_dssp ------HHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC------------------C------------
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchh-----------hhccc------------
Confidence 1235679999999999999998775 89999999995 443311 11111
Q ss_pred ccccccccHHHHHHHHHHHhhhcc
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
.....+...+|+|++++.++....
T Consensus 209 ~~~~~~~~pedvA~~v~~l~s~~~ 232 (274)
T 3e03_A 209 VDAAACRRPEIMADAAHAVLTREA 232 (274)
T ss_dssp CCGGGSBCTHHHHHHHHHHHTSCC
T ss_pred ccccccCCHHHHHHHHHHHhCccc
Confidence 112237789999999999987654
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-23 Score=189.07 Aligned_cols=221 Identities=12% Similarity=0.066 Sum_probs=150.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+++||||+|+||++++++|+++|++|++++|+.+..+.... ... ...++.++ |..+ ++++++.+
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~---~~~~~~~~--d~~~---v~~~~~~~~~~~g 71 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAE---TYPQLKPM--SEQE---PAELIEAVTSAYG 71 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHH---HCTTSEEC--CCCS---HHHHHHHHHHHHS
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHh---cCCcEEEE--CHHH---HHHHHHHHHHHhC
Confidence 3689999999999999999999999999999997654433221 111 12334443 4444 44444432
Q ss_pred CccEEEEccccc-Cch----hhccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQA-GVR----YAMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ~~d~vi~~Ag~~-~~~----~~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||.. ... ...++.+..+++|+.|+.++++++. +.+.+ +||++||...+...
T Consensus 72 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~----------- 139 (254)
T 1zmt_A 72 QVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSG-HIIFITSATPFGPW----------- 139 (254)
T ss_dssp CCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCSTTTSCC-----------
T ss_pred CCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECCcccccCC-----------
Confidence 679999999986 321 1223346799999999998888764 34433 99999998776421
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHH------HHHHHHHcCCceeEEecCCCCc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYF------FFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
.+...|+.||.+.+.+++.++.++ |+++++|+||.|+||........+ .....+....+
T Consensus 140 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~p----------- 207 (254)
T 1zmt_A 140 -KELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA----------- 207 (254)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS-----------
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccCC-----------
Confidence 345789999999999999998775 899999999999887543211111 11111111111
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
...+.+.+|+|++++.++...... ..|+++++.+|..
T Consensus 208 -~~~~~~p~dvA~~v~~l~s~~~~~----------~tG~~~~vdgG~~ 244 (254)
T 1zmt_A 208 -LQRLGTQKELGELVAFLASGSCDY----------LTGQVFWLAGGFP 244 (254)
T ss_dssp -SSSCBCHHHHHHHHHHHHTTSCGG----------GTTCEEEESTTCC
T ss_pred -CCCCcCHHHHHHHHHHHhCcccCC----------ccCCEEEECCCch
Confidence 112678999999999988765432 3448999988753
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=191.49 Aligned_cols=216 Identities=13% Similarity=0.081 Sum_probs=153.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHh---CCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKK---RGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
++++|+++||||+|+||++++++|++ +|++|++++|+.+............ ....++.++.+|++|.++++++++.
T Consensus 3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (259)
T 1oaa_A 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQ-QPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHH-CTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhh-CCCCeEEEEecCCCCHHHHHHHHHH
Confidence 46789999999999999999999999 8999999999765433332222111 1134689999999999999888765
Q ss_pred c-------Ccc--EEEEcccccCc--h-----hhccChHHHHHHHHHHHHHHHHHHHhcCC-----CCeEEEecCCcccC
Q 042406 153 V-------AFT--HVMHLAAQAGV--R-----YAMQNPNSYVESNIAGFVNLLETCKSSDP-----QPAIVWASSSSVYG 211 (424)
Q Consensus 153 ~-------~~d--~vi~~Ag~~~~--~-----~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-----~~~~v~~SS~~vyg 211 (424)
+ ++| +||||||.... . ...++.+..+++|+.|+.++++++..... ..+||++||...+.
T Consensus 82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~ 161 (259)
T 1oaa_A 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence 4 457 99999998532 1 12234467999999999999998865432 13799999987764
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCCCCCCCC---cHHHHHHHHHcCCceeE
Q 042406 212 VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSITGLRFFTVYGPWGRPDM---AYFFFTRDIIRGKRITV 287 (424)
Q Consensus 212 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~i~~~~vrp~~v~G~~~~~~~---~~~~~~~~~~~~~~~~~ 287 (424)
. ..+...|++||++.+.+++.++.++ ++++++|+||.|-.+...... ........+...
T Consensus 162 ~------------~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~----- 224 (259)
T 1oaa_A 162 P------------YKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKL----- 224 (259)
T ss_dssp C------------CTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHH-----
T ss_pred C------------CCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcchHHHHhhccCChhHHHHHHHh-----
Confidence 2 1345789999999999999999886 599999999998765210000 000000001000
Q ss_pred EecCCCCccccccccHHHHHHHHHHHhhh
Q 042406 288 YEAPDGASVARDFTYIDDIVKGCLAGLDT 316 (424)
Q Consensus 288 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 316 (424)
.....+.+++|+|++++.++..
T Consensus 225 -------~p~~~~~~p~dvA~~v~~l~~~ 246 (259)
T 1oaa_A 225 -------KSDGALVDCGTSAQKLLGLLQK 246 (259)
T ss_dssp -------HHTTCSBCHHHHHHHHHHHHHH
T ss_pred -------hhcCCcCCHHHHHHHHHHHHhh
Confidence 0012377899999999998875
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-23 Score=188.42 Aligned_cols=202 Identities=18% Similarity=0.187 Sum_probs=130.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHH---HHhhc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLD---KIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~---~~~~~ 152 (424)
++++|++|||||+|+||++++++|++ |+.|++++|+.+.... .. ...++.++.+|+++.+..+ +.++.
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~----~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (245)
T 3e9n_A 2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAA----LA----EIEGVEPIESDIVKEVLEEGGVDKLKN 72 (245)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHH----HH----TSTTEEEEECCHHHHHHTSSSCGGGTT
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHH----HH----hhcCCcceecccchHHHHHHHHHHHHh
Confidence 35789999999999999999999987 9999999996432211 11 1356899999999876522 22222
Q ss_pred c-CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 153 V-AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 153 ~-~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
. ++|+||||||...... ..++.+..+++|+.|+.++++++. +.+ .+||++||...+...
T Consensus 73 ~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~~---------- 140 (245)
T 3e9n_A 73 LDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGAGNGPH---------- 140 (245)
T ss_dssp CSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC------------------
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCcccccCC----------
Confidence 2 6799999999865432 223346789999999877777653 333 389999998877531
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.|.++.... +. .... .......+
T Consensus 141 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~------~~----~~~~--------~~~~~~~~ 200 (245)
T 3e9n_A 141 --PGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQG------LM----DSQG--------TNFRPEIY 200 (245)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------CCGGG
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhh------hh----hhhh--------cccccccC
Confidence 345789999999999999998764 8999999999999873321 11 0000 11112348
Q ss_pred ccHHHHHHHHHHHhhhcc
Q 042406 301 TYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~ 318 (424)
++++|+|++++.+++.+.
T Consensus 201 ~~p~dvA~~i~~l~~~~~ 218 (245)
T 3e9n_A 201 IEPKEIANAIRFVIDAGE 218 (245)
T ss_dssp SCHHHHHHHHHHHHTSCT
T ss_pred CCHHHHHHHHHHHHcCCC
Confidence 899999999999998765
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-22 Score=200.52 Aligned_cols=225 Identities=17% Similarity=0.135 Sum_probs=160.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++|++|||||+|+||.++++.|+++|++|++++|+... ....... ...++.++.+|++|.++++++++.+
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~--~~l~~~~----~~~~~~~~~~Dvtd~~~v~~~~~~~~ 282 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA--EDLKRVA----DKVGGTALTLDVTADDAVDKITAHVT 282 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH--HHHHHHH----HHHTCEEEECCTTSTTHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH--HHHHHHH----HHcCCeEEEEecCCHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999985321 1111111 1125679999999999999888754
Q ss_pred -----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS----DPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~----~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||+..... ..++.+..+++|+.|+.++.+++... +. .+||++||.+.+...
T Consensus 283 ~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~-g~iV~iSS~a~~~g~------- 354 (454)
T 3u0b_A 283 EHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEG-GRVIGLSSMAGIAGN------- 354 (454)
T ss_dssp HHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTT-CEEEEECCHHHHHCC-------
T ss_pred HHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CEEEEEeChHhCCCC-------
Confidence 3899999999865422 22334578999999999999998765 33 389999997654321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.....|+++|.+.+.+++.++.++ |+++++|+||.|.++..... .......... ....
T Consensus 355 -----~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~---~~~~~~~~~~-----------~~~l 415 (454)
T 3u0b_A 355 -----RGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAI---PLATREVGRR-----------LNSL 415 (454)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC-------------CHHHHH-----------SBTT
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhc---chhhHHHHHh-----------hccc
Confidence 346889999999999999988764 89999999999988743210 0000000000 0111
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
..+...+|+|++++.++...... ..|+++++.++.
T Consensus 416 ~r~g~pedvA~~v~fL~s~~a~~----------itG~~i~vdGG~ 450 (454)
T 3u0b_A 416 FQGGQPVDVAELIAYFASPASNA----------VTGNTIRVCGQA 450 (454)
T ss_dssp SSCBCHHHHHHHHHHHHCGGGTT----------CCSCEEEESSSB
T ss_pred cCCCCHHHHHHHHHHHhCCccCC----------CCCcEEEECCcc
Confidence 22567899999999888755432 455899998865
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-22 Score=185.81 Aligned_cols=233 Identities=13% Similarity=0.024 Sum_probs=153.3
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCch--hhhHHHHHh---hhhccC----CeEEEEcc-----
Q 042406 76 STRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYY--ETSLKKARK---GLLERA----GVFVIDAD----- 139 (424)
Q Consensus 76 ~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~---~~~~~~----~v~~~~~D----- 139 (424)
++++|+++||||+ |+||++++++|+++|++|++++|+.... ...+..... ...... ....+.+|
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN 84 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccc
Confidence 4678999999999 9999999999999999999998742100 000000000 000001 12344443
Q ss_pred ---CC----C--------HHHHHHHhhcc-----CccEEEEcccccC---c---hhhccChHHHHHHHHHHHHHHHHHHH
Q 042406 140 ---IN----D--------KSLLDKIFNVV-----AFTHVMHLAAQAG---V---RYAMQNPNSYVESNIAGFVNLLETCK 193 (424)
Q Consensus 140 ---l~----d--------~~~v~~~~~~~-----~~d~vi~~Ag~~~---~---~~~~~~~~~~~~~N~~g~~~ll~a~~ 193 (424)
+. | .++++++++.+ ++|+||||||... . ....++.+..+++|+.|+.++++++.
T Consensus 85 ~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 164 (297)
T 1d7o_A 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL 164 (297)
T ss_dssp GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred hhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22 2 44566665543 6799999999642 1 11233446799999999999999987
Q ss_pred hcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCCC
Q 042406 194 SSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTDQPA-SLYAATKKAGEAIAHAYNHI----YGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 194 ~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~~i~~~~vrp~~v~G~~~~ 267 (424)
.... ..+||++||...+... ... ..|++||++.+.+++.++.+ .|+++++|+||.|.+|...
T Consensus 165 ~~m~~~g~iv~isS~~~~~~~------------~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~T~~~~ 232 (297)
T 1d7o_A 165 PIMNPGGASISLTYIASERII------------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAK 232 (297)
T ss_dssp GGEEEEEEEEEEECGGGTSCC------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSS
T ss_pred HHhccCceEEEEeccccccCC------------CCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccccchhh
Confidence 6421 1389999997665321 223 57999999999999998765 4899999999999998654
Q ss_pred CCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 268 PDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.......+...+....+. ..+.+++|+|++++.++...... ..|+++++.+|.
T Consensus 233 ~~~~~~~~~~~~~~~~p~------------~r~~~pedvA~~v~~l~s~~~~~----------itG~~i~vdgG~ 285 (297)
T 1d7o_A 233 AIGFIDTMIEYSYNNAPI------------QKTLTADEVGNAAAFLVSPLASA----------ITGATIYVDNGL 285 (297)
T ss_dssp CCSHHHHHHHHHHHHSSS------------CCCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTG
T ss_pred hccccHHHHHHhhccCCC------------CCCCCHHHHHHHHHHHhCccccC----------CCCCEEEECCCc
Confidence 322222333333222221 12568999999999888654322 344899998874
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=183.79 Aligned_cols=215 Identities=16% Similarity=0.084 Sum_probs=147.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
+++|+++||||+|+||++++++|+++|++|++++|+.+........... ...++.++.+|++|.++++++++.+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQS---LGGQCVPVVCDSSQESEVRSLFEQVDRE 79 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---HSSEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH---cCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999975443332222211 1346889999999999998887653
Q ss_pred ---CccEEEEccc--cc------Cc---hhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCC
Q 042406 154 ---AFTHVMHLAA--QA------GV---RYAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKK 215 (424)
Q Consensus 154 ---~~d~vi~~Ag--~~------~~---~~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~ 215 (424)
++|+|||||| .. .. ....++.+..+++|+.++.++.+++ ++.+.+ +||++||...+..
T Consensus 80 ~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~--- 155 (260)
T 2qq5_A 80 QQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQG-LIVVISSPGSLQY--- 155 (260)
T ss_dssp HTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCC-EEEEECCGGGTSC---
T ss_pred cCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCc-EEEEEcChhhcCC---
Confidence 5799999994 32 11 1112234578889999987766554 344444 9999999877642
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCC
Q 042406 216 VPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 216 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.|.++..... ... ............
T Consensus 156 ----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~~~--~~~~~~~~~~~~---- 217 (260)
T 2qq5_A 156 ----------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEH--MAK--EEVLQDPVLKQF---- 217 (260)
T ss_dssp ----------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC--------------------------
T ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHh--hcc--ccccchhHHHHH----
Confidence 234789999999999999998764 89999999999988743210 000 000000000000
Q ss_pred CCccccccccHHHHHHHHHHHhhhc
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
.....-+...+|+|++++.++...
T Consensus 218 -~~~~~~~~~pe~va~~v~~l~s~~ 241 (260)
T 2qq5_A 218 -KSAFSSAETTELSGKCVVALATDP 241 (260)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCT
T ss_pred -HhhhccCCCHHHHHHHHHHHhcCc
Confidence 000112467899999999988764
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=7.3e-22 Score=188.09 Aligned_cols=266 Identities=14% Similarity=0.063 Sum_probs=173.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCC---------CCchhhhHHHHHhhhhccCCeEEEEccCCCHHHH
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF---------NNYYETSLKKARKGLLERAGVFVIDADINDKSLL 146 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~---------~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v 146 (424)
++++|+++||||+|+||+++++.|+++|++|++.+|. .+..+........ ... ...+|++|.+++
T Consensus 6 ~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~-----~~~-~~~~D~~~~~~~ 79 (319)
T 1gz6_A 6 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR-----RGG-KAVANYDSVEAG 79 (319)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH-----TTC-EEEEECCCGGGH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHh-----hCC-eEEEeCCCHHHH
Confidence 4688999999999999999999999999999998763 2222221111111 111 235899999887
Q ss_pred HHHhhcc-----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCc-ccCC
Q 042406 147 DKIFNVV-----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSS-VYGV 212 (424)
Q Consensus 147 ~~~~~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~-vyg~ 212 (424)
+++++.. ++|+||||||+.... ...++.+..+++|+.|+.++++++ ++.+.+ +||++||.+ .++.
T Consensus 80 ~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-rIV~vsS~~~~~~~ 158 (319)
T 1gz6_A 80 EKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYG-RIIMTASASGIYGN 158 (319)
T ss_dssp HHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHHCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEECChhhccCC
Confidence 7776543 679999999986532 123345679999999988887776 444444 999999964 4542
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEe
Q 042406 213 NKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYE 289 (424)
Q Consensus 213 ~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.+ .+... . ..
T Consensus 159 -------------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~-~-~~----------------- 205 (319)
T 1gz6_A 159 -------------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTE-T-VM----------------- 205 (319)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTG-G-GS-----------------
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-ccccc-c-cC-----------------
Confidence 345789999999999999998774 899999999987 33111 0 00
Q ss_pred cCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCC
Q 042406 290 APDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP 369 (424)
Q Consensus 290 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~ 369 (424)
......+++.+|+|.+++.++..+.. ..|++|++.+|...... ..... -...+
T Consensus 206 ----~~~~~~~~~p~dvA~~~~~l~s~~~~-----------~tG~~~~v~GG~~~~~~---------~~~~~-~~~~~-- 258 (319)
T 1gz6_A 206 ----PEDLVEALKPEYVAPLVLWLCHESCE-----------ENGGLFEVGAGWIGKLR---------WERTL-GAIVR-- 258 (319)
T ss_dssp ----CHHHHHHSCGGGTHHHHHHHTSTTCC-----------CCSCEEEEETTEEEEEE---------EEECC-CEECC--
T ss_pred ----ChhhhccCCHHHHHHHHHHHhCchhh-----------cCCCEEEECCCeEEEEe---------eeecc-ceecc--
Confidence 01122356789999999988865322 23488998876421110 00000 00000
Q ss_pred CCCCcccccCChHHH-------HhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 370 RNGDVQFTHANISLA-------QRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 370 ~~~~~~~~~~d~s~~-------~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
......|...+ .+..|+....++++.++..+++..+...
T Consensus 259 ----~~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (319)
T 1gz6_A 259 ----KRNQPMTPEAVRDNWVKICDFSNASKPKSIQESTGGIIEVLHKIDS 304 (319)
T ss_dssp ----BTTBCCCHHHHHHTHHHHTCCTTCBCCCCHHHHHHHHHHHHHHHC-
T ss_pred ----CCCCCCCHHHHHHHHHHhhccccccCCCchHHHHHHHHHHHhhccc
Confidence 00112233332 2335776556899999999887766543
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=8.4e-22 Score=188.45 Aligned_cols=175 Identities=15% Similarity=0.136 Sum_probs=134.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhh---hhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKG---LLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
++|+|+||||+|+||++++++|+++|++|++++|+.+............ .....++.++.+|++|.++++++++.+
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT 80 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence 3678999999999999999999999999999888655443322221110 011357899999999999999999875
Q ss_pred --CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 --AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||+..... ..++.+..+++|+.|+.++++++ ++.+.+ +||++||...+...
T Consensus 81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g-~IV~isS~~~~~~~---------- 149 (327)
T 1jtv_A 81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSG-RVLVTGSVGGLMGL---------- 149 (327)
T ss_dssp TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEEEEGGGTSCC----------
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEECCcccccCC----------
Confidence 5799999999754321 22334679999999999998875 444444 99999998765421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEEeccccCCC
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHI---YGLSITGLRFFTVYGPW 265 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~---~~i~~~~vrp~~v~G~~ 265 (424)
.....|++||++.+.+++.++.+ .|+++++|+||.|.++.
T Consensus 150 --~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 150 --PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 33578999999999999999876 48999999999998874
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-21 Score=176.60 Aligned_cols=218 Identities=12% Similarity=0.011 Sum_probs=145.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEE-e--CCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH-HHHHhhcc-
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGL-D--NFNNYYETSLKKARKGLLERAGVFVIDADINDKSL-LDKIFNVV- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~-~--r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-v~~~~~~~- 153 (424)
+|+++||||+|+||++++++|+++|++|+++ + |+.+..... ..+ . .+..+. |..+.+. ++++.+..
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~----~~~-~--~~~~~~--~~~~v~~~~~~~~~~~g 71 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRF----ESE-N--PGTIAL--AEQKPERLVDATLQHGE 71 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHH----HHH-S--TTEEEC--CCCCGGGHHHHHGGGSS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHH----HHH-h--CCCccc--CHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999 5 864332221 111 1 122222 4443332 22333322
Q ss_pred CccEEEEcccccCc---hh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGV---RY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~---~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||.... .. ..++.+..+++|+.|+.++++++. +.+. .+||++||...+...
T Consensus 72 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~~--------- 141 (244)
T 1zmo_A 72 AIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGG-ASVIFITSSVGKKPL--------- 141 (244)
T ss_dssp CEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTSCC---------
T ss_pred CCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECChhhCCCC---------
Confidence 67999999997543 11 123346799999999998888764 3443 389999998776421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCC---CCCCcH-HHHHHHHHc-CCceeEEecCCCC
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWG---RPDMAY-FFFTRDIIR-GKRITVYEAPDGA 294 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~---~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~ 294 (424)
.+...|++||++.+.+++.++.++ |+++++|+||.|..+.. .. .. ......+.. ..+
T Consensus 142 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~--~~~~~~~~~~~~~~~p---------- 206 (244)
T 1zmo_A 142 ---AYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSD--WENNPELRERVDRDVP---------- 206 (244)
T ss_dssp ---TTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHH--HHHCHHHHHHHHHHCT----------
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccccc--ccchHHHHHHHhcCCC----------
Confidence 345789999999999999998774 89999999999987743 10 00 001111111 111
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+...+|+|++++.++...... ..|+.+.+.+|.
T Consensus 207 --~~r~~~pe~vA~~v~~l~s~~~~~----------~tG~~i~vdgG~ 242 (244)
T 1zmo_A 207 --LGRLGRPDEMGALITFLASRRAAP----------IVGQFFAFTGGY 242 (244)
T ss_dssp --TCSCBCHHHHHHHHHHHHTTTTGG----------GTTCEEEESTTC
T ss_pred --CCCCcCHHHHHHHHHHHcCccccC----------ccCCEEEeCCCC
Confidence 112678999999999988764432 334888888763
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-21 Score=191.22 Aligned_cols=208 Identities=20% Similarity=0.166 Sum_probs=151.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEeCCCCchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++||||||+|+||.+++++|+++|++ |++++|+....... .....+ .....++.++.+|++|.+++.++++++
T Consensus 224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~-~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~ 302 (486)
T 2fr1_A 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGA-GELVAELEALGARTTVAACDVTDRESVRELLGGIG 302 (486)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTH-HHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHH-HHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999999995 99999975422111 111111 112357899999999999999999876
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc-cCCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSV-YGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~v-yg~~~~~~~~e~~~~~ 225 (424)
++|+||||||+..... ..++.+..+++|+.|+.++.++++..+.+ +||++||.+. +|.
T Consensus 303 ~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~-~~V~~SS~a~~~g~------------- 368 (486)
T 2fr1_A 303 DDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLT-AFVLFSSFASAFGA------------- 368 (486)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTCC-------------
T ss_pred hcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCC-EEEEEcChHhcCCC-------------
Confidence 6799999999865321 22334568899999999999999887765 9999999644 442
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHH
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDD 305 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D 305 (424)
.....|+++|...+.+.+++.. .|+++++|+||.+++++.... .. ...+ ...-..+++.+|
T Consensus 369 ~g~~~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~~~---------~~----~~~~-----~~~g~~~i~~e~ 429 (486)
T 2fr1_A 369 PGLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAEG---------PV----ADRF-----RRHGVIEMPPET 429 (486)
T ss_dssp TTCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-------------------------C-----TTTTEECBCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCcccch---------hH----HHHH-----HhcCCCCCCHHH
Confidence 3457899999999999887754 499999999999987632111 00 0001 011235799999
Q ss_pred HHHHHHHHhhhcc
Q 042406 306 IVKGCLAGLDTAK 318 (424)
Q Consensus 306 va~a~~~~~~~~~ 318 (424)
+++++..++....
T Consensus 430 ~a~~l~~~l~~~~ 442 (486)
T 2fr1_A 430 ACRALQNALDRAE 442 (486)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999998654
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-20 Score=185.39 Aligned_cols=228 Identities=18% Similarity=0.137 Sum_probs=161.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..+++||||||+|+||.+++++|+++|+ +|++++|+....... .....+. ....++.++.||++|.+++.+++++.+
T Consensus 257 ~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~-~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ 335 (511)
T 2z5l_A 257 QPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGA-AELAEELRGHGCEVVHAACDVAERDALAALVTAYP 335 (511)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTH-HHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHH-HHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCC
Confidence 4678999999999999999999999999 588999975322111 1111111 123468999999999999999998756
Q ss_pred ccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCc-ccCCCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS-DPQPAIVWASSSS-VYGVNKKVPFSEKDRTDQPA 228 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~~v~~SS~~-vyg~~~~~~~~e~~~~~~~~ 228 (424)
+|+||||||+..... ..++.+..+++|+.|+.++.+++... +.+ +||++||.+ ++|. ...
T Consensus 336 ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~-~~V~~SS~a~~~g~-------------~g~ 401 (511)
T 2z5l_A 336 PNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLD-AFVLFSSVTGTWGN-------------AGQ 401 (511)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCC-CEEEEEEGGGTTCC-------------TTB
T ss_pred CcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCC-EEEEEeCHHhcCCC-------------CCC
Confidence 799999999865421 12233568899999999999998876 544 899999964 4553 345
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHH
Q 042406 229 SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVK 308 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ 308 (424)
..|+++|...+.+++.+.. .|+++++|+||.+.+.+.... . ....+.. .-..+++.+|+++
T Consensus 402 ~~YaaaKa~ld~la~~~~~-~gi~v~sv~pG~~~~tgm~~~-~---~~~~~~~--------------~g~~~l~~e~~a~ 462 (511)
T 2z5l_A 402 GAYAAANAALDALAERRRA-AGLPATSVAWGLWGGGGMAAG-A---GEESLSR--------------RGLRAMDPDAAVD 462 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTCCCEEEEECCBCSTTCCCC-H---HHHHHHH--------------HTBCCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCcEEEEECCcccCCccccc-c---cHHHHHh--------------cCCCCCCHHHHHH
Confidence 7899999999999988753 499999999998843322211 1 1111111 0123788999999
Q ss_pred HHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHH
Q 042406 309 GCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKI 356 (424)
Q Consensus 309 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~ 356 (424)
++..++.... ..+.+. .+.+..+...+...
T Consensus 463 ~l~~al~~~~---------------~~v~v~---~~d~~~~~~~~~~~ 492 (511)
T 2z5l_A 463 ALLGAMGRND---------------VCVTVV---DVDWERFAPATNAI 492 (511)
T ss_dssp HHHHHHHHTC---------------SEEEEC---CBCHHHHHHHHHHH
T ss_pred HHHHHHhCCC---------------CEEEEE---eCCHHHHHhhhccc
Confidence 9999998764 234444 25677776655443
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=7.2e-20 Score=174.24 Aligned_cols=232 Identities=15% Similarity=0.040 Sum_probs=148.9
Q ss_pred CCCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEeCCCCc------hh-hhHHHHHhhhhccC---CeEEEEccC---
Q 042406 76 STRGLTVLVTGA--AGFVGSHVSLALKKRGDGVLGLDNFNNY------YE-TSLKKARKGLLERA---GVFVIDADI--- 140 (424)
Q Consensus 76 ~~~~~~vlItGg--~G~iG~~l~~~L~~~g~~V~~~~r~~~~------~~-~~~~~~~~~~~~~~---~v~~~~~Dl--- 140 (424)
++++|+++|||| +|+||++++++|+++|++|++++|+... .. ...... .+..... .+.++.+|+
T Consensus 6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~ 84 (315)
T 2o2s_A 6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDED-RKLPDGSLIEFAGVYPLDAAFD 84 (315)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHH-HBCTTSCBCCCSCEEECCTTCS
T ss_pred cCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhh-hhhhcccccccccccccccccc
Confidence 367899999999 8999999999999999999999974210 00 000001 1110011 134544443
Q ss_pred ---------CC--------HHHHHHHhhcc-----CccEEEEcccccC---ch---hhccChHHHHHHHHHHHHHHHHHH
Q 042406 141 ---------ND--------KSLLDKIFNVV-----AFTHVMHLAAQAG---VR---YAMQNPNSYVESNIAGFVNLLETC 192 (424)
Q Consensus 141 ---------~d--------~~~v~~~~~~~-----~~d~vi~~Ag~~~---~~---~~~~~~~~~~~~N~~g~~~ll~a~ 192 (424)
+| .++++++++.+ ++|+||||||... .. ...++.+..+++|+.|+.++++++
T Consensus 85 ~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~ 164 (315)
T 2o2s_A 85 KPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHF 164 (315)
T ss_dssp STTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHH
Confidence 32 44666666543 6799999999642 11 122334678999999999999998
Q ss_pred HhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCC
Q 042406 193 KSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTDQPA-SLYAATKKAGEAIAHAYNHI----YGLSITGLRFFTVYGPWG 266 (424)
Q Consensus 193 ~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~~i~~~~vrp~~v~G~~~ 266 (424)
..... ..+||++||...+... ... ..|++||++.+.+++.++.+ .|+++++|+||.|..+..
T Consensus 165 ~~~m~~~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~ 232 (315)
T 2o2s_A 165 GPIMNEGGSAVTLSYLAAERVV------------PGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAA 232 (315)
T ss_dssp STTEEEEEEEEEEEEGGGTSCC------------TTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHH
T ss_pred HHHHhcCCEEEEEecccccccC------------CCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhh
Confidence 65421 1389999997765321 222 47999999999999998765 489999999999976521
Q ss_pred C------CCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCC
Q 042406 267 R------PDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGN 340 (424)
Q Consensus 267 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 340 (424)
. ...+...+...+....+. .-+...+|+|++++.++...... ..|+++.+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~p~------------~r~~~pedvA~~v~~L~s~~~~~----------itG~~i~vdG 290 (315)
T 2o2s_A 233 SAIGKSGEKSFIDYAIDYSYNNAPL------------RRDLHSDDVGGAALFLLSPLARA----------VSGVTLYVDN 290 (315)
T ss_dssp HHTTCSSSSCHHHHHHHHHHHHSSS------------CCCCCHHHHHHHHHHHTSGGGTT----------CCSCEEEEST
T ss_pred hhccccccchhHHHHHHHHhccCCC------------CCCCCHHHHHHHHHHHhCchhcc----------CcCCEEEECC
Confidence 0 000111111111111111 12567899999999988754322 3458899887
Q ss_pred CC
Q 042406 341 TT 342 (424)
Q Consensus 341 ~~ 342 (424)
|.
T Consensus 291 G~ 292 (315)
T 2o2s_A 291 GL 292 (315)
T ss_dssp TG
T ss_pred Ce
Confidence 74
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=180.62 Aligned_cols=175 Identities=11% Similarity=-0.011 Sum_probs=125.0
Q ss_pred CCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHh------h---hhccCCeEEEEccCCCH--H
Q 042406 78 RGLTVLVTGAAG--FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARK------G---LLERAGVFVIDADINDK--S 144 (424)
Q Consensus 78 ~~~~vlItGg~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~------~---~~~~~~v~~~~~Dl~d~--~ 144 (424)
++|+++||||++ +||++++++|+++|++|++.+|+....-..+...+. . ......+.++.+|+++. +
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 368999999975 999999999999999999888743100000000000 0 11123478899999887 7
Q ss_pred ------------------HHHHHhhcc-----CccEEEEcccccC---ch---hhccChHHHHHHHHHHHHHHHHHHHhc
Q 042406 145 ------------------LLDKIFNVV-----AFTHVMHLAAQAG---VR---YAMQNPNSYVESNIAGFVNLLETCKSS 195 (424)
Q Consensus 145 ------------------~v~~~~~~~-----~~d~vi~~Ag~~~---~~---~~~~~~~~~~~~N~~g~~~ll~a~~~~ 195 (424)
++.++++.+ ++|+||||||+.. .. ...++.+..+++|+.|+.++.+++...
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 777777654 6899999999742 11 122334679999999999999987654
Q ss_pred CCC-CeEEEecCCcccCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCC
Q 042406 196 DPQ-PAIVWASSSSVYGVNKKVPFSEKDRTDQPAS-LYAATKKAGEAIAHAYNHI----YGLSITGLRFFTVYGP 264 (424)
Q Consensus 196 ~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~-~Y~~sK~~~e~~~~~~~~~----~~i~~~~vrp~~v~G~ 264 (424)
... .+||++||...+... .... .|++||++.+.+++.++.+ .|+++++|+||.|..+
T Consensus 161 m~~~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 161 MKPQSSIISLTYHASQKVV------------PGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp EEEEEEEEEEECGGGTSCC------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HhhCCeEEEEeCccccCCC------------CcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 211 389999997665321 2233 8999999999999988755 4899999999999765
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=180.66 Aligned_cols=208 Identities=18% Similarity=0.146 Sum_probs=150.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
++++|||||+|+||.+++++|+++|+ .|++++|+.............-.....++.++.||++|.+++.++++.+
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA 318 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 48999999999999999999999998 7888888643222111111111112457899999999999999999875
Q ss_pred CccEEEEccccc-Cch----hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc-cCCCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQA-GVR----YAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSV-YGVNKKVPFSEKDRTDQP 227 (424)
Q Consensus 154 ~~d~vi~~Ag~~-~~~----~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~v-yg~~~~~~~~e~~~~~~~ 227 (424)
++|+||||||+. ... ...++.+..+++|+.|+.++.+++...+.+ +||++||.+. +|. ..
T Consensus 319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~-~iV~~SS~a~~~g~-------------~g 384 (496)
T 3mje_A 319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLD-AFVLFSSGAAVWGS-------------GG 384 (496)
T ss_dssp CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTTC-------------TT
T ss_pred CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCC-EEEEEeChHhcCCC-------------CC
Confidence 589999999986 221 122234578999999999999999988765 8999999554 442 34
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHH
Q 042406 228 ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIV 307 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva 307 (424)
...|+++|...+.+++++.. .|+++++|+||.+.+++...+. .....+.... + ..+..++.+
T Consensus 385 ~~~YaAaKa~ldala~~~~~-~Gi~v~sV~pG~w~~~gm~~~~---~~~~~l~~~g-~-------------~~l~pe~~~ 446 (496)
T 3mje_A 385 QPGYAAANAYLDALAEHRRS-LGLTASSVAWGTWGEVGMATDP---EVHDRLVRQG-V-------------LAMEPEHAL 446 (496)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-TTCCCEEEEECEESSSCC---------CHHHHHTT-E-------------EEECHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCcccCCccccCh---HHHHHHHhcC-C-------------CCCCHHHHH
Confidence 57899999999999987754 5999999999998776443211 1111122211 1 135678999
Q ss_pred HHHHHHhhhcc
Q 042406 308 KGCLAGLDTAK 318 (424)
Q Consensus 308 ~a~~~~~~~~~ 318 (424)
+++..++....
T Consensus 447 ~~l~~~l~~~~ 457 (496)
T 3mje_A 447 GALDQMLENDD 457 (496)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHcCCC
Confidence 99999888764
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=191.78 Aligned_cols=204 Identities=18% Similarity=0.055 Sum_probs=137.0
Q ss_pred CCCCCCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeC---------CCCchhhhHHHHHhhhhccCCeEEEEccC
Q 042406 70 KSTRPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN---------FNNYYETSLKKARKGLLERAGVFVIDADI 140 (424)
Q Consensus 70 ~~~~~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r---------~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl 140 (424)
+.....++++|+++||||+|+||+++++.|+++|++|++++| +.+..+........ .+.. +.+|+
T Consensus 10 ~~~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~-----~~~~-~~~D~ 83 (613)
T 3oml_A 10 SSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRK-----AGGE-AVADY 83 (613)
T ss_dssp -----CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHH-----TTCC-EEECC
T ss_pred CcccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHH-----hCCe-EEEEe
Confidence 334455789999999999999999999999999999999988 33332222222221 1112 34899
Q ss_pred CCHHHHHHHhhcc-----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCC
Q 042406 141 NDKSLLDKIFNVV-----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSS 207 (424)
Q Consensus 141 ~d~~~v~~~~~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~ 207 (424)
+|.++++++++.+ ++|+||||||+.... ...++.+..+++|+.|+.++++++ ++.+.+ +||++||.
T Consensus 84 ~d~~~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g-~IV~isS~ 162 (613)
T 3oml_A 84 NSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYG-RIIMTSSN 162 (613)
T ss_dssp CCGGGHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCE-EEEEECCH
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECCH
Confidence 9999988888765 689999999986542 223345679999999999888877 444443 89999996
Q ss_pred ccc-CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCC
Q 042406 208 SVY-GVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGK 283 (424)
Q Consensus 208 ~vy-g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~ 283 (424)
+.+ +. .....|++||++.+.+++.++.++ |+++++|+||.+- +.. .+.
T Consensus 163 a~~~~~-------------~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~~~--------------~~~ 214 (613)
T 3oml_A 163 SGIYGN-------------FGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-RMT--------------EGI 214 (613)
T ss_dssp HHHHCC-------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------------CCC
T ss_pred HHcCCC-------------CCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-hhh--------------hhc
Confidence 554 32 345789999999999999998775 8999999998641 110 000
Q ss_pred ceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 284 RITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 284 ~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
........+..+|+|.+++.++...
T Consensus 215 ---------~~~~~~~~~~pedvA~~v~~L~s~~ 239 (613)
T 3oml_A 215 ---------LPDILFNELKPKLIAPVVAYLCHES 239 (613)
T ss_dssp ---------CCHHHHTTCCGGGTHHHHHHTTSTT
T ss_pred ---------cchhhhhcCCHHHHHHHHHHhcCCC
Confidence 0112233557899999999888665
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.5e-20 Score=174.89 Aligned_cols=238 Identities=14% Similarity=0.006 Sum_probs=132.5
Q ss_pred CCCCCeEEEEcC--CChhHHHHHHHHHhCCCeEEEEeCCC-----------CchhhhHHH------HHhhhhccC-----
Q 042406 76 STRGLTVLVTGA--AGFVGSHVSLALKKRGDGVLGLDNFN-----------NYYETSLKK------ARKGLLERA----- 131 (424)
Q Consensus 76 ~~~~~~vlItGg--~G~iG~~l~~~L~~~g~~V~~~~r~~-----------~~~~~~~~~------~~~~~~~~~----- 131 (424)
.+++|++||||| +|+||+++++.|+++|++|++++|+. +........ .........
T Consensus 6 ~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (319)
T 2ptg_A 6 DLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLV 85 (319)
T ss_dssp CCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------C
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccc
Confidence 367899999999 89999999999999999999998742 111100000 000000000
Q ss_pred CeEEEEccC------------CC--------HHHHHHHhhcc-----CccEEEEcccccC---c---hhhccChHHHHHH
Q 042406 132 GVFVIDADI------------ND--------KSLLDKIFNVV-----AFTHVMHLAAQAG---V---RYAMQNPNSYVES 180 (424)
Q Consensus 132 ~v~~~~~Dl------------~d--------~~~v~~~~~~~-----~~d~vi~~Ag~~~---~---~~~~~~~~~~~~~ 180 (424)
.+.++.+|+ +| .++++++++.+ ++|+||||||... . ....++.+..+++
T Consensus 86 ~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~v 165 (319)
T 2ptg_A 86 FDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSS 165 (319)
T ss_dssp CSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHH
T ss_pred ccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhH
Confidence 134444442 22 33566665543 6799999999642 1 1122334678999
Q ss_pred HHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEE
Q 042406 181 NIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTDQPA-SLYAATKKAGEAIAHAYNHI----YGLSIT 254 (424)
Q Consensus 181 N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~-~~Y~~sK~~~e~~~~~~~~~----~~i~~~ 254 (424)
|+.|+.++++++..... ..+||++||...+... ... ..|++||++.+.+++.++.+ .|++++
T Consensus 166 N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn 233 (319)
T 2ptg_A 166 SSYSFVSLLQHFLPLMKEGGSALALSYIASEKVI------------PGYGGGMSSAKAALESDCRTLAFEAGRARAVRVN 233 (319)
T ss_dssp HTHHHHHHHHHHGGGEEEEEEEEEEEECC------------------------------THHHHHHHHHHHHHHHCCEEE
T ss_pred hhHHHHHHHHHHHHHHhcCceEEEEecccccccc------------CccchhhHHHHHHHHHHHHHHHHHhccccCeeEE
Confidence 99999999999876421 1389999997665321 222 57999999999999998765 489999
Q ss_pred EEEeccccCCCCCCCCc--HHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 042406 255 GLRFFTVYGPWGRPDMA--YFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAE 332 (424)
Q Consensus 255 ~vrp~~v~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~ 332 (424)
+|+||.|..+....... ...+...... .+ .......-+...+|+|++++.++...... ..
T Consensus 234 ~v~PG~v~T~~~~~~~~~~~~~~~~~~~~-----~~---~~~~p~~r~~~peevA~~v~~L~s~~~~~----------it 295 (319)
T 2ptg_A 234 CISAGPLKSRAASAIGKAGDKTFIDLAID-----YS---EANAPLQKELESDDVGRAALFLLSPLARA----------VT 295 (319)
T ss_dssp EEEECCCC---------------------------------------CCCHHHHHHHHHHHTSGGGTT----------CC
T ss_pred EEeeCCccChhhhhcccccchhhHHHHHH-----HH---hccCCCCCCCCHHHHHHHHHHHhCcccCC----------cc
Confidence 99999998763221000 0000000000 00 00001112668999999999988754322 34
Q ss_pred cceEEcCCCCc
Q 042406 333 FRIFNLGNTTP 343 (424)
Q Consensus 333 ~~~~~i~~~~~ 343 (424)
|+++.+.+|..
T Consensus 296 G~~i~vdGG~~ 306 (319)
T 2ptg_A 296 GATLYVDNGLH 306 (319)
T ss_dssp SCEEEESTTCT
T ss_pred CCEEEECCCce
Confidence 58999988753
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.7e-19 Score=176.98 Aligned_cols=207 Identities=17% Similarity=0.111 Sum_probs=148.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEE-eCCCCc-------------hhhhHHHHHhhhhccCCeEEEEccCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDG-VLGL-DNFNNY-------------YETSLKKARKGLLERAGVFVIDADIN 141 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~-V~~~-~r~~~~-------------~~~~~~~~~~~~~~~~~v~~~~~Dl~ 141 (424)
.+++++|||||+|+||.++++.|+++|++ |+++ +|+... ......... ....++.++.+|++
T Consensus 249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~---~~g~~v~~~~~Dvt 325 (525)
T 3qp9_A 249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELA---DLGATATVVTCDLT 325 (525)
T ss_dssp CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHH---HHTCEEEEEECCTT
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHH---hcCCEEEEEECCCC
Confidence 46899999999999999999999999997 5555 776421 111111111 12457999999999
Q ss_pred CHHHHHHHhhcc----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcC-----CCCeEEEecCCc
Q 042406 142 DKSLLDKIFNVV----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSD-----PQPAIVWASSSS 208 (424)
Q Consensus 142 d~~~v~~~~~~~----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~-----~~~~~v~~SS~~ 208 (424)
|.+++.++++.+ ++|+||||||+..... ..++.+..+++|+.|+.++.+++.... .+ +||++||.+
T Consensus 326 d~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~-~iV~~SS~a 404 (525)
T 3qp9_A 326 DAEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPP-VLVLFSSVA 404 (525)
T ss_dssp SHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCC-EEEEEEEGG
T ss_pred CHHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC-EEEEECCHH
Confidence 999999999875 6899999999865422 222346789999999999999998765 44 899999966
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEE
Q 042406 209 VYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVY 288 (424)
Q Consensus 209 vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (424)
.+-.. .....|+++|...+.+..++.. .|+++++|+||.+-++... +. .....+....
T Consensus 405 ~~~g~------------~g~~~YaaaKa~l~~lA~~~~~-~gi~v~sI~pG~~~tgm~~-~~---~~~~~~~~~g----- 462 (525)
T 3qp9_A 405 AIWGG------------AGQGAYAAGTAFLDALAGQHRA-DGPTVTSVAWSPWEGSRVT-EG---ATGERLRRLG----- 462 (525)
T ss_dssp GTTCC------------TTCHHHHHHHHHHHHHHTSCCS-SCCEEEEEEECCBTTSGGG-SS---HHHHHHHHTT-----
T ss_pred HcCCC------------CCCHHHHHHHHHHHHHHHHHHh-CCCCEEEEECCcccccccc-ch---hhHHHHHhcC-----
Confidence 54321 3468899999999998776644 4999999999999332111 11 1111111111
Q ss_pred ecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 289 EAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 289 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
...+..+++++++..++....
T Consensus 463 ---------~~~l~pee~a~~l~~~l~~~~ 483 (525)
T 3qp9_A 463 ---------LRPLAPATALTALDTALGHGD 483 (525)
T ss_dssp ---------BCCBCHHHHHHHHHHHHHHTC
T ss_pred ---------CCCCCHHHHHHHHHHHHhCCC
Confidence 125678999999999998765
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=171.76 Aligned_cols=213 Identities=15% Similarity=0.101 Sum_probs=142.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccC-CCHHH-HHHHhhcc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI-NDKSL-LDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl-~d~~~-v~~~~~~~ 153 (424)
++++|+++||||+++||+++++.|+++|++|++.+|.. .+........ ....+..+.+|+ .+.+. ++++.+..
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~---~g~~~~~~~~Dv~~~~~~~~~~~~~~~ 393 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKA---AGGEAWPDQHDVAKDSEAIIKNVIDKY 393 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHH---TTCEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHh---cCCeEEEEEcChHHHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999998732 2222222211 123566778888 55443 23333332
Q ss_pred -CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||+..... ..++.+..+++|+.|+.++.+++. +.+. .+||++||.+.+-..
T Consensus 394 G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~IVnisS~ag~~~~----------- 461 (604)
T 2et6_A 394 GTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQF-GRIINITSTSGIYGN----------- 461 (604)
T ss_dssp SCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCHHHHSCC-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECChhhccCC-----------
Confidence 6799999999864321 223346799999999888776653 3333 389999996553211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
.....|++||++...+.+.++.++ |+++++|.||. -.+... ..... . .....
T Consensus 462 -~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~~----------~~~~~---~----------~~~~~ 516 (604)
T 2et6_A 462 -FGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMTL----------SIMRE---Q----------DKNLY 516 (604)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC--------------------------------CCSS
T ss_pred -CCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCcccc----------ccCch---h----------hccCC
Confidence 334789999999999999998774 89999999983 222110 00000 0 01234
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 302 YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
..+|+|.+++.++..... ..|+++.+.+|
T Consensus 517 ~pe~vA~~v~~L~s~~~~-----------itG~~~~vdGG 545 (604)
T 2et6_A 517 HADQVAPLLVYLGTDDVP-----------VTGETFEIGGG 545 (604)
T ss_dssp CGGGTHHHHHHTTSTTCC-----------CCSCEEEEETT
T ss_pred CHHHHHHHHHHHhCCccC-----------CCCcEEEECCC
Confidence 679999999887765432 23377777665
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-19 Score=172.28 Aligned_cols=176 Identities=15% Similarity=0.116 Sum_probs=128.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-------GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
.|+|+||||+||||++++..|+++|+ +|+++|+.... ........+ +....+.++ .|+.+.+.+.++++
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~--~~~~g~~~d-l~~~~~~~~-~di~~~~~~~~a~~ 79 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAM--KALEGVVME-LEDCAFPLL-AGLEATDDPKVAFK 79 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGH--HHHHHHHHH-HHTTTCTTE-EEEEEESCHHHHTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCch--hhccchhhh-hhccccccc-CCeEeccChHHHhC
Confidence 46899999999999999999999996 89999985310 000111111 111122233 57777677788888
Q ss_pred ccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcc-cCCCCCCCCCCCCC-CCCCC
Q 042406 152 VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSV-YGVNKKVPFSEKDR-TDQPA 228 (424)
Q Consensus 152 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~v-yg~~~~~~~~e~~~-~~~~~ 228 (424)
++ |+|||+||..... ..++...+.+|+.++.++++++++.+ ...+++++|+..- .. +..++.. ...|.
T Consensus 80 ~~--D~Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----~~~~~~~~~~~p~ 150 (327)
T 1y7t_A 80 DA--DYALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----LIAYKNAPGLNPR 150 (327)
T ss_dssp TC--SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHTCTTSCGG
T ss_pred CC--CEEEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----HHHHHHcCCCChh
Confidence 66 9999999986533 35667899999999999999999986 5557888877431 11 1111111 12456
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 229 SLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 229 ~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
..|+.+|+.+|++...+++.+|++.+++||++||||++.
T Consensus 151 ~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~ 189 (327)
T 1y7t_A 151 NFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS 189 (327)
T ss_dssp GEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred heeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence 789999999999999999888999999999999999763
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=170.54 Aligned_cols=228 Identities=17% Similarity=0.124 Sum_probs=151.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC---------CchhhhHHHHHhhhhccCCeEEEEccCCCHHHH
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN---------NYYETSLKKARKGLLERAGVFVIDADINDKSLL 146 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~---------~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v 146 (424)
++++|+++||||+++||+++++.|+++|++|++.+|+. +..+....+... .+.. ..+|++|.+++
T Consensus 5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~-----~g~~-~~~d~~d~~~~ 78 (604)
T 2et6_A 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVK-----NGGV-AVADYNNVLDG 78 (604)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHH-----TTCE-EEEECCCTTCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHh-----cCCe-EEEEcCCHHHH
Confidence 46789999999999999999999999999999998864 222222222211 1112 23577776555
Q ss_pred HHHhhcc-----CccEEEEcccccCch----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCccc-CC
Q 042406 147 DKIFNVV-----AFTHVMHLAAQAGVR----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVY-GV 212 (424)
Q Consensus 147 ~~~~~~~-----~~d~vi~~Ag~~~~~----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vy-g~ 212 (424)
+++++.+ ++|+||||||+.... ...++.+..+++|+.|+.++.+++ ++.+.+ +||++||.+.+ +.
T Consensus 79 ~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G-~IVnisS~ag~~~~ 157 (604)
T 2et6_A 79 DKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYG-RIVNTSSPAGLYGN 157 (604)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHHCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEECCHHHcCCC
Confidence 4444332 689999999985432 123344679999999988776665 344433 89999996543 32
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEe
Q 042406 213 NKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYE 289 (424)
Q Consensus 213 ~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (424)
.....|++||++.+.+.+.++.++ ||++++|.|+ +..+ +.... .+
T Consensus 158 -------------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~----------m~~~~---~~----- 205 (604)
T 2et6_A 158 -------------FGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSR----------MTESI---MP----- 205 (604)
T ss_dssp -------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCH----------HHHTT---SC-----
T ss_pred -------------CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCc----------ccccc---CC-----
Confidence 234789999999999999998774 8999999996 2211 11100 00
Q ss_pred cCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC------------------CcccHHHHHH
Q 042406 290 APDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT------------------TPVPVSRLVS 351 (424)
Q Consensus 290 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------------------~~~s~~el~~ 351 (424)
.........+|+|.+++.++..... ..|+++.+.+| ..++..++.+
T Consensus 206 -----~~~~~~~~pe~vA~~v~~L~s~~~~-----------itG~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 269 (604)
T 2et6_A 206 -----PPMLEKLGPEKVAPLVLYLSSAENE-----------LTGQFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAK 269 (604)
T ss_dssp -----HHHHTTCSHHHHHHHHHHHTSSSCC-----------CCSCEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHH
T ss_pred -----hhhhccCCHHHHHHHHHHHhCCccc-----------CCCCEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHH
Confidence 0111235789999999988876521 22356665443 3467788888
Q ss_pred HHHHHhC
Q 042406 352 LLEKILK 358 (424)
Q Consensus 352 ~i~~~~g 358 (424)
.+.+...
T Consensus 270 ~~~~~~~ 276 (604)
T 2et6_A 270 RFSEILD 276 (604)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 8877653
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-17 Score=181.01 Aligned_cols=211 Identities=14% Similarity=0.113 Sum_probs=146.0
Q ss_pred CCCCCeEEEEcCCCh-hHHHHHHHHHhCCCeEEEEe-CCCCchhhhHHHHHhhhh-ccCCeEEEEccCCCHHHHHHHhhc
Q 042406 76 STRGLTVLVTGAAGF-VGSHVSLALKKRGDGVLGLD-NFNNYYETSLKKARKGLL-ERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
++++|++|||||+|+ ||+++++.|+++|++|++++ |+.+.............. ...++.++.+|++|.++++++++.
T Consensus 672 ~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~ 751 (1887)
T 2uv8_A 672 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 751 (1887)
T ss_dssp CCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHH
Confidence 478899999999998 99999999999999999994 554433332222222111 134689999999999999888763
Q ss_pred c-----------CccEEEEcccccCch-h-h-----ccChHHHHHHHHHHHHHHHHHHHhcCC-----CCeEEEecCCcc
Q 042406 153 V-----------AFTHVMHLAAQAGVR-Y-A-----MQNPNSYVESNIAGFVNLLETCKSSDP-----QPAIVWASSSSV 209 (424)
Q Consensus 153 ~-----------~~d~vi~~Ag~~~~~-~-~-----~~~~~~~~~~N~~g~~~ll~a~~~~~~-----~~~~v~~SS~~v 209 (424)
+ ++|+||||||+.... . . .++.+..+++|+.|+.+++++++.... ..+||++||...
T Consensus 752 i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag 831 (1887)
T 2uv8_A 752 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 831 (1887)
T ss_dssp HHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHh
Confidence 1 479999999986432 1 1 223467999999999999988743211 138999999755
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHHHhC--CcEEEEEeccccC-CCCCCCCcHHHHHHHHHcCCce
Q 042406 210 YGVNKKVPFSEKDRTDQPASLYAATKKAGEAI-AHAYNHIYG--LSITGLRFFTVYG-PWGRPDMAYFFFTRDIIRGKRI 285 (424)
Q Consensus 210 yg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~~--i~~~~vrp~~v~G-~~~~~~~~~~~~~~~~~~~~~~ 285 (424)
+.. ....|++||++.+.+ .+.++.+++ |++++|+||.|.| +-....... .......++
T Consensus 832 ~~g--------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~~~~----~~~~~~~pl 893 (1887)
T 2uv8_A 832 TFG--------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNII----AEGIEKMGV 893 (1887)
T ss_dssp CSS--------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----CCTT----HHHHHTTSC
T ss_pred ccC--------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccchhH----HHHHHhcCC
Confidence 421 236799999999998 677766543 9999999999984 321111111 111111111
Q ss_pred eEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 286 TVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
-+...+|+|.+++.++...
T Consensus 894 -------------r~~sPEEVA~avlfLaSd~ 912 (1887)
T 2uv8_A 894 -------------RTFSQKEMAFNLLGLLTPE 912 (1887)
T ss_dssp -------------CCEEHHHHHHHHHGGGSHH
T ss_pred -------------CCCCHHHHHHHHHHHhCCC
Confidence 1347899999999888665
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-17 Score=156.35 Aligned_cols=177 Identities=13% Similarity=-0.037 Sum_probs=127.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHh-CCCeEEEEeCCCCchhhh-----------HHHHHhhhhccCCeEEEEccCCCH
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKK-RGDGVLGLDNFNNYYETS-----------LKKARKGLLERAGVFVIDADINDK 143 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~Dl~d~ 143 (424)
...+|++|||||+++||+++++.|++ +|++|++++|+.+..... ...... .....+..+.+|++|.
T Consensus 44 ~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~--~~G~~a~~i~~Dvtd~ 121 (405)
T 3zu3_A 44 ANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAA--QKGLYAKSINGDAFSD 121 (405)
T ss_dssp TTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHH--HTTCCEEEEESCTTSH
T ss_pred CCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHH--hcCCceEEEECCCCCH
Confidence 35689999999999999999999999 999999999876543321 111111 1235688999999999
Q ss_pred HHHHHHhhcc-----CccEEEEcccccC-------------c-h------------------------hhccChHHHHHH
Q 042406 144 SLLDKIFNVV-----AFTHVMHLAAQAG-------------V-R------------------------YAMQNPNSYVES 180 (424)
Q Consensus 144 ~~v~~~~~~~-----~~d~vi~~Ag~~~-------------~-~------------------------~~~~~~~~~~~~ 180 (424)
++++++++.+ ++|+||||||... . + ...++.+..+++
T Consensus 122 ~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~V 201 (405)
T 3zu3_A 122 EIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAV 201 (405)
T ss_dssp HHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHh
Confidence 9998888765 6899999999741 0 0 112233567888
Q ss_pred HHHHHH-HHHHHHHhcCC---CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCc
Q 042406 181 NIAGFV-NLLETCKSSDP---QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY----GLS 252 (424)
Q Consensus 181 N~~g~~-~ll~a~~~~~~---~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~i~ 252 (424)
|..+.. .+++++..... ..++|++||.+..-.. +......|++||.+.+.+++.++.++ |++
T Consensus 202 n~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~----------p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIR 271 (405)
T 3zu3_A 202 MGGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITH----------DIYWNGSIGAAKKDLDQKVLAIRESLAAHGGGD 271 (405)
T ss_dssp HSSHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGT----------TTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCE
T ss_pred hchhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcC----------CCccchHHHHHHHHHHHHHHHHHHHhCcccCeE
Confidence 887765 55555432211 1389999996553210 10122789999999999999998773 899
Q ss_pred EEEEEeccccCC
Q 042406 253 ITGLRFFTVYGP 264 (424)
Q Consensus 253 ~~~vrp~~v~G~ 264 (424)
+++|.||.|-.+
T Consensus 272 VNaVaPG~i~T~ 283 (405)
T 3zu3_A 272 ARVSVLKAVVSQ 283 (405)
T ss_dssp EEEEECCCCCCH
T ss_pred EEEEEeCCCcCc
Confidence 999999999876
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=176.86 Aligned_cols=211 Identities=16% Similarity=0.107 Sum_probs=144.3
Q ss_pred CCCCCeEEEEcCCCh-hHHHHHHHHHhCCCeEEEEe-CCCCchhhhHHHHHhhhh-ccCCeEEEEccCCCHHHHHHHhhc
Q 042406 76 STRGLTVLVTGAAGF-VGSHVSLALKKRGDGVLGLD-NFNNYYETSLKKARKGLL-ERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~-iG~~l~~~L~~~g~~V~~~~-r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
++++|++|||||+|+ ||.++++.|+++|++|++++ |+.+...........+.. ....+.++.+|++|.++++++++.
T Consensus 649 ~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~ 728 (1878)
T 2uv9_A 649 TFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNY 728 (1878)
T ss_dssp CCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence 468899999999999 99999999999999999996 444333222222211111 134688999999999999988864
Q ss_pred c---------CccEEEEcccccCch-h-h-----ccChHHHHHHHHHHHHHHHHHHH--hcC---CCCeEEEecCCcccC
Q 042406 153 V---------AFTHVMHLAAQAGVR-Y-A-----MQNPNSYVESNIAGFVNLLETCK--SSD---PQPAIVWASSSSVYG 211 (424)
Q Consensus 153 ~---------~~d~vi~~Ag~~~~~-~-~-----~~~~~~~~~~N~~g~~~ll~a~~--~~~---~~~~~v~~SS~~vyg 211 (424)
+ ++|+||||||+.... . . .++.+..+++|+.|+.+++++++ ... ...+||++||...+.
T Consensus 729 i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~ 808 (1878)
T 2uv9_A 729 IYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTF 808 (1878)
T ss_dssp HHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSS
T ss_pred HHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhcc
Confidence 2 479999999986432 1 1 12346799999999998887632 221 113899999965532
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH-h--CCcEEEEEecccc-CCCCCCCCcHHHHHHHHHcCCceeE
Q 042406 212 VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI-Y--GLSITGLRFFTVY-GPWGRPDMAYFFFTRDIIRGKRITV 287 (424)
Q Consensus 212 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-~--~i~~~~vrp~~v~-G~~~~~~~~~~~~~~~~~~~~~~~~ 287 (424)
. ....|++||++.+.+++.+..+ + ++++++|+||.+- ++.... ...........++
T Consensus 809 g--------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~----~~~~~~~~~~~pl-- 868 (1878)
T 2uv9_A 809 G--------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSA----NNLVAEGVEKLGV-- 868 (1878)
T ss_dssp S--------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSH----HHHTHHHHHTTTC--
T ss_pred C--------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccccc----chhhHHHHHhcCC--
Confidence 1 2367999999999998776543 2 3999999999987 442211 0111122221111
Q ss_pred EecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 288 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
-+...+|+|.+++.++...
T Consensus 869 -----------r~~sPeEVA~avlfLaSd~ 887 (1878)
T 2uv9_A 869 -----------RTFSQQEMAFNLLGLMAPA 887 (1878)
T ss_dssp -----------CCBCHHHHHHHHHHHHSHH
T ss_pred -----------CCCCHHHHHHHHHHHhCCc
Confidence 1347899999999887654
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=158.34 Aligned_cols=177 Identities=12% Similarity=-0.044 Sum_probs=125.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh-CCCeEEEEeCCCCchhhh-----------HHHHHhhhhccCCeEEEEccCCCHHH
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKK-RGDGVLGLDNFNNYYETS-----------LKKARKGLLERAGVFVIDADINDKSL 145 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~-----------~~~~~~~~~~~~~v~~~~~Dl~d~~~ 145 (424)
.+|++|||||+++||+++++.|++ +|++|++++|+.+..... ..... . .....+..+.+|++|.++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~-~-~~G~~a~~i~~Dvtd~~~ 137 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHA-K-AAGLYSKSINGDAFSDAA 137 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHH-H-HTTCCEEEEESCTTSHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHH-H-hcCCcEEEEEecCCCHHH
Confidence 488999999999999999999999 999999999987654321 11111 1 123568899999999999
Q ss_pred HHHHhhcc------CccEEEEccccc-------------Cc-h------------------------hhccChHHHHHHH
Q 042406 146 LDKIFNVV------AFTHVMHLAAQA-------------GV-R------------------------YAMQNPNSYVESN 181 (424)
Q Consensus 146 v~~~~~~~------~~d~vi~~Ag~~-------------~~-~------------------------~~~~~~~~~~~~N 181 (424)
++++++.+ ++|+||||||.. .. + ...++.+..+++|
T Consensus 138 v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn 217 (422)
T 3s8m_A 138 RAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVM 217 (422)
T ss_dssp HHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhh
Confidence 88777543 579999999862 10 0 1122234567777
Q ss_pred HHHHH-HHHHHHHhcCC---CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEE
Q 042406 182 IAGFV-NLLETCKSSDP---QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSIT 254 (424)
Q Consensus 182 ~~g~~-~ll~a~~~~~~---~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~ 254 (424)
..+.. .+++++..... ..++|++||.+..-.. +......|++||.+.+.+.+.++.++ |++++
T Consensus 218 ~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~----------p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVN 287 (422)
T 3s8m_A 218 GGQDWELWIDALEGAGVLADGARSVAFSYIGTEITW----------PIYWHGALGKAKVDLDRTAQRLNARLAKHGGGAN 287 (422)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGH----------HHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred chhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccC----------CCccchHHHHHHHHHHHHHHHHHHHhCccCEEEE
Confidence 66654 55665543221 1389999996553210 00112689999999999999999775 89999
Q ss_pred EEEeccccCCCC
Q 042406 255 GLRFFTVYGPWG 266 (424)
Q Consensus 255 ~vrp~~v~G~~~ 266 (424)
+|.||.|-.+..
T Consensus 288 aVaPG~i~T~~~ 299 (422)
T 3s8m_A 288 VAVLKSVVTQAS 299 (422)
T ss_dssp EEEECCCCCTTG
T ss_pred EEEcCCCcChhh
Confidence 999999988744
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-17 Score=170.12 Aligned_cols=171 Identities=24% Similarity=0.234 Sum_probs=130.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHH-hCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALK-KRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~-~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
..+++++||||+|+||+.+++.|+ ++|+ .|++++|+....+........-.....++.++.||++|.++++++++.+
T Consensus 528 ~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~ 607 (795)
T 3slk_A 528 DAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIP 607 (795)
T ss_dssp CTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred ccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 468999999999999999999999 7998 5999999743222211111111112457899999999999999999876
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCccc-CCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVY-GVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vy-g~~~~~~~~e~~~~~ 225 (424)
++|+||||||+..... ..++.+..+++|+.|+.++.+++.... +||++||.+.+ |.
T Consensus 608 ~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l---~iV~~SS~ag~~g~------------- 671 (795)
T 3slk_A 608 DEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPDV---ALVLFSSVSGVLGS------------- 671 (795)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS---EEEEEEETHHHHTC-------------
T ss_pred HhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC---EEEEEccHHhcCCC-------------
Confidence 5899999999865322 223346789999999999999884432 79999996554 32
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCC
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGP 264 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~ 264 (424)
.....|+++|...+.+.+++... |+++++|.||.+-++
T Consensus 672 ~g~~~YaAaka~~~alA~~~~~~-Gi~v~sI~pG~v~t~ 709 (795)
T 3slk_A 672 GGQGNYAAANSFLDALAQQRQSR-GLPTRSLAWGPWAEH 709 (795)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHT-TCCEEEEEECCCSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHc-CCeEEEEECCeECcc
Confidence 44688999999888888877654 999999999988755
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-16 Score=151.82 Aligned_cols=176 Identities=13% Similarity=-0.025 Sum_probs=124.3
Q ss_pred CCCCeEEEEcCCChhHHH--HHHHHHhCCCeEEEEeCCCCchh-----------hhHHHHHhhhhccCCeEEEEccCCCH
Q 042406 77 TRGLTVLVTGAAGFVGSH--VSLALKKRGDGVLGLDNFNNYYE-----------TSLKKARKGLLERAGVFVIDADINDK 143 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~--l~~~L~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~~~~~~~v~~~~~Dl~d~ 143 (424)
..+|++|||||+++||.+ +++.|+++|++|++++|+..... ........ .....+.++.+|++|.
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~Dvtd~ 135 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAK--KKGLVAKNFIEDAFSN 135 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHH--HTTCCEEEEESCTTCH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHH--HcCCcEEEEEeeCCCH
Confidence 578999999999999999 99999999999999999765432 11111111 1235688999999999
Q ss_pred HHHHHHhhcc-----CccEEEEccccc-------------Cc-h------------------------hhccChHHHHHH
Q 042406 144 SLLDKIFNVV-----AFTHVMHLAAQA-------------GV-R------------------------YAMQNPNSYVES 180 (424)
Q Consensus 144 ~~v~~~~~~~-----~~d~vi~~Ag~~-------------~~-~------------------------~~~~~~~~~~~~ 180 (424)
++++++++.+ ++|+||||||.. .. + ...++.+..+++
T Consensus 136 ~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~v 215 (418)
T 4eue_A 136 ETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKV 215 (418)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHH
Confidence 9998888765 689999999973 00 0 011222456666
Q ss_pred HHHHHH-HHHHHHHhcCC---CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH----hCCc
Q 042406 181 NIAGFV-NLLETCKSSDP---QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI----YGLS 252 (424)
Q Consensus 181 N~~g~~-~ll~a~~~~~~---~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~i~ 252 (424)
|..+.. .+++++..... ..++|++||.+..-.. +......|++||.+.+.+++.++.+ .|++
T Consensus 216 n~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~----------p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIr 285 (418)
T 4eue_A 216 MGGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTY----------KIYREGTIGIAKKDLEDKAKLINEKLNRVIGGR 285 (418)
T ss_dssp HSSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGT----------TTTTTSHHHHHHHHHHHHHHHHHHHHHHHHSCE
T ss_pred hhHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCC----------CccccHHHHHHHHHHHHHHHHHHHHhCCccCeE
Confidence 666554 45555443221 1379999986543210 1122378999999999999998865 5899
Q ss_pred EEEEEeccccCC
Q 042406 253 ITGLRFFTVYGP 264 (424)
Q Consensus 253 ~~~vrp~~v~G~ 264 (424)
+++|.||.|-.+
T Consensus 286 VN~V~PG~v~T~ 297 (418)
T 4eue_A 286 AFVSVNKALVTK 297 (418)
T ss_dssp EEEEECCCCCCH
T ss_pred EEEEECCcCcCh
Confidence 999999999875
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.5e-17 Score=173.61 Aligned_cols=212 Identities=14% Similarity=0.093 Sum_probs=142.8
Q ss_pred CCCCCeEEEEcCCCh-hHHHHHHHHHhCCCeEEEE-eCCCCchhhhHHHHHhhhh-ccCCeEEEEccCCCHHHHHHHhhc
Q 042406 76 STRGLTVLVTGAAGF-VGSHVSLALKKRGDGVLGL-DNFNNYYETSLKKARKGLL-ERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~-iG~~l~~~L~~~g~~V~~~-~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
++++|++|||||+|+ ||+++++.|+++|++|+++ +|+.+.............. ...++.++.+|++|.++++++++.
T Consensus 473 sL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~ 552 (1688)
T 2pff_A 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 552 (1688)
T ss_dssp CCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHH
T ss_pred ccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 467899999999998 9999999999999999998 4655444333322221111 134688999999999999888763
Q ss_pred c-----------CccEEEEcccccCch-hh------ccChHHHHHHHHHHHHHHHHHHHh--cCC---CCeEEEecCCcc
Q 042406 153 V-----------AFTHVMHLAAQAGVR-YA------MQNPNSYVESNIAGFVNLLETCKS--SDP---QPAIVWASSSSV 209 (424)
Q Consensus 153 ~-----------~~d~vi~~Ag~~~~~-~~------~~~~~~~~~~N~~g~~~ll~a~~~--~~~---~~~~v~~SS~~v 209 (424)
+ ++|+||||||+.... .. .++.+..+++|+.|+.+++++++. ... ..+||++||.+.
T Consensus 553 I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG 632 (1688)
T 2pff_A 553 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 632 (1688)
T ss_dssp HHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHh
Confidence 2 479999999985432 11 223367899999999999888732 211 138999999655
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHHHh--CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCcee
Q 042406 210 YGVNKKVPFSEKDRTDQPASLYAATKKAGEAI-AHAYNHIY--GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRIT 286 (424)
Q Consensus 210 yg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~-~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 286 (424)
+.. ....|++||++.+.+ .+.++.++ .+++++|+||.|.|.+..... ......... .
T Consensus 633 ~~G--------------g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~---e~~~~~l~~--i- 692 (1688)
T 2pff_A 633 TFG--------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSAN---NIIAEGIEK--M- 692 (1688)
T ss_dssp TSS--------------CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTT---TTCSTTTSS--S-
T ss_pred ccC--------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCc---hHHHHHHHh--C-
Confidence 321 236799999999998 44444443 389999999999853211100 000000000 0
Q ss_pred EEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 287 VYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 287 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
+ .-+...+|+|.+++.++...
T Consensus 693 -------p---lR~~sPEEVA~aIlFLaSd~ 713 (1688)
T 2pff_A 693 -------G---VRTFSQKEMAFNLLGLLTPE 713 (1688)
T ss_dssp -------S---CCCCCCCTTHHHHHHHTSTT
T ss_pred -------C---CCCCCHHHHHHHHHHHhCCC
Confidence 0 01346789999999888655
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=161.52 Aligned_cols=173 Identities=16% Similarity=0.084 Sum_probs=124.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc---
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV--- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~--- 153 (424)
.+|+++||||+|+||+.+++.|+++|++ |++++|+.............-.....++.++.+|++|.++++++++.+
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999999999997 788888765433221111111112356889999999999999888754
Q ss_pred -CccEEEEcccccCc----hhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGV----RYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~----~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~ 227 (424)
++|+||||||+... ....++.+..+++|+.|+.++.+++.... ...+||++||.+..-.. ..
T Consensus 1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~------------~g 2030 (2512)
T 2vz8_A 1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGN------------AG 2030 (2512)
T ss_dssp SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTC------------TT
T ss_pred CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCC------------CC
Confidence 68999999997542 12334456789999999999988776532 11389999996554211 34
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccC
Q 042406 228 ASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYG 263 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G 263 (424)
...|+++|.+.+.+++....+ |++...+..|.+-+
T Consensus 2031 ~~~Y~aaKaal~~l~~~rr~~-Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A 2031 QANYGFANSAMERICEKRRHD-GLPGLAVQWGAIGD 2065 (2512)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT-TSCCCEEEECCBCT
T ss_pred cHHHHHHHHHHHHHHHHHHHC-CCcEEEEEccCcCC
Confidence 578999999999999977655 89999998887643
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-13 Score=154.97 Aligned_cols=244 Identities=14% Similarity=0.069 Sum_probs=150.6
Q ss_pred CCCCCeEEEEcCCCh-hHHHHHHHHHhCCCeEEEEeCCCCchhhh-HHHHHhhhh-ccCCeEEEEccCCCHHHHHHHhhc
Q 042406 76 STRGLTVLVTGAAGF-VGSHVSLALKKRGDGVLGLDNFNNYYETS-LKKARKGLL-ERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~-iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~-~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
.+++|++|||||+++ ||+++++.|+++|++|++.+|+.+..... ......+.. ....+..+.+|++|.++++++++.
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHH
Confidence 478999999999999 99999999999999999999987641111 111111111 234578899999999999888653
Q ss_pred c---------CccEEEEccccc----Cc-----hhhccCh----HHHHHHHHHHHHHHHHHHHh----cCCCC--eEEEe
Q 042406 153 V---------AFTHVMHLAAQA----GV-----RYAMQNP----NSYVESNIAGFVNLLETCKS----SDPQP--AIVWA 204 (424)
Q Consensus 153 ~---------~~d~vi~~Ag~~----~~-----~~~~~~~----~~~~~~N~~g~~~ll~a~~~----~~~~~--~~v~~ 204 (424)
+ ++|+||||||+. .. .....+. +..+++|+.++..+++++.. .+... .+|..
T Consensus 2213 i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~ 2292 (3089)
T 3zen_D 2213 VGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLP 2292 (3089)
T ss_dssp HTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEE
T ss_pred HHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEE
Confidence 2 579999999971 11 0112222 34588999998877766543 33211 22222
Q ss_pred cCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH--h--CCcEEEEEeccccCCCCCCCCcHHHHHHHHH
Q 042406 205 SSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI--Y--GLSITGLRFFTVYGPWGRPDMAYFFFTRDII 280 (424)
Q Consensus 205 SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~--~--~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~ 280 (424)
+| ...+.. .....|++||++.+.+++.++.+ + +++++.+.||.|-+....... .......
T Consensus 2293 ~s-s~~g~~------------g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~---~~~~~~~ 2356 (3089)
T 3zen_D 2293 GS-PNRGMF------------GGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQN---DAIVSAV 2356 (3089)
T ss_dssp EC-SSTTSC------------SSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTT---TTTHHHH
T ss_pred CC-cccccC------------CCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccc---hhHHHHH
Confidence 22 111110 12357999999999999999988 4 689999999998753221110 0011111
Q ss_pred cCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC---cccHHHHHHHHHH
Q 042406 281 RGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT---PVPVSRLVSLLEK 355 (424)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~s~~el~~~i~~ 355 (424)
..... .....+|+|.+++.++......-. + ...-...+.+|- ...+.++.+.+.+
T Consensus 2357 ~~~~~-------------r~~~PeEIA~avlfLaS~~a~~~~-~------~~p~~vdl~GG~~~~~~~~~~~~~~~~~ 2414 (3089)
T 3zen_D 2357 EEAGV-------------TTYTTDEMAAMLLDLCTVETKVAA-A------GAPVKVDLTGGLGDIKIDMAELAAKARE 2414 (3089)
T ss_dssp GGGSC-------------BCEEHHHHHHHHHHTTSHHHHHHH-H------HSCEEEECSBSCSSCCCCHHHHTHHHHH
T ss_pred HhcCC-------------CCCCHHHHHHHHHHHhChhhhhHh-c------CCeEEEEcCCCcCcCCCCHHHHHHHHHH
Confidence 11110 122689999999988765432100 0 000233444543 3678888876643
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-10 Score=91.93 Aligned_cols=91 Identities=22% Similarity=0.195 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.+|+|+|+|+ |++|+.+++.|++.| ++|++++|+.+.... ....++.++.+|+.+.+.+.+++++. |
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~---------~~~~~~~~~~~d~~~~~~~~~~~~~~--d 71 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAV---------LNRMGVATKQVDAKDEAGLAKALGGF--D 71 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHH---------HHTTTCEEEECCTTCHHHHHHHTTTC--S
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHH---------HHhCCCcEEEecCCCHHHHHHHHcCC--C
Confidence 4578999999 999999999999999 899999995432111 11357888999999999999999865 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCC
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~ 198 (424)
+|||+++.. .+.++++++.+.+..
T Consensus 72 ~vi~~~~~~------------------~~~~~~~~~~~~g~~ 95 (118)
T 3ic5_A 72 AVISAAPFF------------------LTPIIAKAAKAAGAH 95 (118)
T ss_dssp EEEECSCGG------------------GHHHHHHHHHHTTCE
T ss_pred EEEECCCch------------------hhHHHHHHHHHhCCC
Confidence 999998631 135788889888863
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.14 E-value=5.7e-11 Score=113.09 Aligned_cols=173 Identities=11% Similarity=0.057 Sum_probs=116.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEeCC----CCchhhhHHHHHhhhhccCCeEEEEccCCCHHHH
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-------GVLGLDNF----NNYYETSLKKARKGLLERAGVFVIDADINDKSLL 146 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-------~V~~~~r~----~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v 146 (424)
+.|+|+||||+|+||.+++..|+.+|. +|+++|++ .++......... .....+ ..|+......
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~-----~~~~~~-~~~i~~~~~~ 77 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEID-----DCAFPL-LAGMTAHADP 77 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHH-----TTTCTT-EEEEEEESSH
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHh-----hhcccc-cCcEEEecCc
Confidence 347899999999999999999999885 79999885 211111111111 110011 1355555567
Q ss_pred HHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcc---cCCCCCCCCCCCC
Q 042406 147 DKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSV---YGVNKKVPFSEKD 222 (424)
Q Consensus 147 ~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~v---yg~~~~~~~~e~~ 222 (424)
.++++++ |+|||+||.... ...+....+..|+.++.++++++.+.+ ...+||++|...- |-.. +..
T Consensus 78 ~~al~~a--D~Vi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~------~~~ 147 (329)
T 1b8p_A 78 MTAFKDA--DVALLVGARPRG--PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAM------KSA 147 (329)
T ss_dssp HHHTTTC--SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH------HTC
T ss_pred HHHhCCC--CEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHH------HHc
Confidence 7888887 999999997432 223456789999999999999999985 6668999987220 0000 000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCC
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWG 266 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~ 266 (424)
+-.++...|+.+++...++...+++..|++...|+..+|+|..+
T Consensus 148 ~~~p~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg 191 (329)
T 1b8p_A 148 PSLPAKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHS 191 (329)
T ss_dssp TTSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSS
T ss_pred CCCCHHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEeccC
Confidence 00022235777888888888888888898877888777888544
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.1e-09 Score=104.27 Aligned_cols=179 Identities=14% Similarity=0.024 Sum_probs=112.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHH-hCCCeEEEEeCCCCchhhh---------HHHHHhhhhccCCeEEEEccCCCHHH
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALK-KRGDGVLGLDNFNNYYETS---------LKKARKGLLERAGVFVIDADINDKSL 145 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~-~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~~~~~v~~~~~Dl~d~~~ 145 (424)
...+|++|||||+++||.+.+..|+ +.|+.|+++.+..+..+.. ..-...-.........+.||++|.+.
T Consensus 47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 47 AKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEI 126 (401)
T ss_dssp SCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHH
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHH
Confidence 4567999999999999999999998 6799999999876543221 00011111234678899999999999
Q ss_pred HHHHhhcc-----CccEEEEcccccCchhh------------------------cc-----------ChHHH-HHHHHHH
Q 042406 146 LDKIFNVV-----AFTHVMHLAAQAGVRYA------------------------MQ-----------NPNSY-VESNIAG 184 (424)
Q Consensus 146 v~~~~~~~-----~~d~vi~~Ag~~~~~~~------------------------~~-----------~~~~~-~~~N~~g 184 (424)
++++++.+ ++|+|||++|...-... .. ..++. .-+.++|
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg 206 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG 206 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence 99988876 78999999997421000 00 00111 1112222
Q ss_pred H---HHHHHHHHhcCC---CCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEE
Q 042406 185 F---VNLLETCKSSDP---QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSITGLR 257 (424)
Q Consensus 185 ~---~~ll~a~~~~~~---~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~i~~~~vr 257 (424)
. ...+.+....+. +.++|-+|+.+.- . ..+......+|.+|.+.|..++.++.+. ++++.++.
T Consensus 207 ~s~~s~w~~al~~a~lla~G~siva~SYiGse---~-------t~P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a~v~v 276 (401)
T 4ggo_A 207 GEDWERWIKQLSKEGLLEEGCITLAYSYIGPE---A-------TQALYRKGTIGKAKEHLEATAHRLNKENPSIRAFVSV 276 (401)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCG---G-------GHHHHTTSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred hhHHHHHHHHHHhhhcccCCceEEEEeccCcc---e-------eecCCCccHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 112222222221 2267777763221 0 0010123578999999999999999876 67888888
Q ss_pred eccccCC
Q 042406 258 FFTVYGP 264 (424)
Q Consensus 258 p~~v~G~ 264 (424)
++.+..+
T Consensus 277 ~~a~vT~ 283 (401)
T 4ggo_A 277 NKGLVTR 283 (401)
T ss_dssp CCCCCCT
T ss_pred cCccccc
Confidence 8777654
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.9e-10 Score=102.87 Aligned_cols=84 Identities=20% Similarity=0.175 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+++|+++||||+|++|++++..|+++|++|++++|+.++.+........ ..++.++.+|++|.+++.++++++
T Consensus 116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~-- 189 (287)
T 1lu9_A 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNK----RFKVNVTAAETADDASRAEAVKGA-- 189 (287)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH----HHTCCCEEEECCSHHHHHHHTTTC--
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHh----cCCcEEEEecCCCHHHHHHHHHhC--
Confidence 35789999999999999999999999999999999975443332222211 124678889999999999999876
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+||||||..
T Consensus 190 DvlVn~ag~g 199 (287)
T 1lu9_A 190 HFVFTAGAIG 199 (287)
T ss_dssp SEEEECCCTT
T ss_pred CEEEECCCcc
Confidence 9999999863
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.91 E-value=8.7e-09 Score=97.72 Aligned_cols=117 Identities=19% Similarity=0.180 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
..|+|+||||+|++|..++..|+.+| ++|+++|++.+ ........ .. . ....+ .. +.+..++++++++.
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~-~~-~-~~~~v-~~-~~~t~d~~~al~ga-- 77 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADIS-HM-D-TGAVV-RG-FLGQQQLEAALTGM-- 77 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHH-TS-C-SSCEE-EE-EESHHHHHHHHTTC--
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhh-cc-c-ccceE-EE-EeCCCCHHHHcCCC--
Confidence 44789999999999999999999999 79999998653 11111111 10 1 11111 11 33456677888877
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+|||+||..... .......+..|+.++.++++++.+.++. .+|+++|
T Consensus 78 DvVi~~ag~~~~~--g~~r~dl~~~N~~~~~~i~~~i~~~~p~-~~viv~S 125 (326)
T 1smk_A 78 DLIIVPAGVPRKP--GMTRDDLFKINAGIVKTLCEGIAKCCPR-AIVNLIS 125 (326)
T ss_dssp SEEEECCCCCCCS--SCCCSHHHHHHHHHHHHHHHHHHHHCTT-SEEEECC
T ss_pred CEEEEcCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEEC
Confidence 9999999964321 2234578999999999999999998876 5666666
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-08 Score=95.73 Aligned_cols=172 Identities=13% Similarity=0.100 Sum_probs=103.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeC--CCCchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDN--FNNYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
|+|+||||+|++|.+++..|+.+|. ++.++|+ +.+............ ......+.+...| +++.++++++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~al~ga- 75 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLRIIDES- 75 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGGGGTTC-
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHHHhCCC-
Confidence 5899999999999999999999885 6888887 332121111111111 1111233333221 2245667777
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH-
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAA- 233 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~- 233 (424)
|+|||+||..... .......+..|+.++.++++++++.+ . .+|+++|--+.-... .-... ...++...+|.
T Consensus 76 -D~Vi~~Ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~-~-~~vlv~SNPv~~~t~-~~~k~--~~~p~~rviG~g 147 (313)
T 1hye_A 76 -DVVIITSGVPRKE--GMSRMDLAKTNAKIVGKYAKKIAEIC-D-TKIFVITNPVDVMTY-KALVD--SKFERNQVFGLG 147 (313)
T ss_dssp -SEEEECCSCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHC-C-CEEEECSSSHHHHHH-HHHHH--HCCCTTSEEECT
T ss_pred -CEEEECCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhC-C-eEEEEecCcHHHHHH-HHHHh--hCcChhcEEEeC
Confidence 9999999974321 23456789999999999999999998 6 566666521100000 00000 00133455665
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPW 265 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~ 265 (424)
+.+...++...+++..|++...|+. .++|..
T Consensus 148 t~LD~~r~~~~la~~lgv~~~~v~~-~v~G~H 178 (313)
T 1hye_A 148 THLDSLRFKVAIAKFFGVHIDEVRT-RIIGEH 178 (313)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGEEC-CEEECS
T ss_pred ccHHHHHHHHHHHHHhCcCHHHeEE-EEeecc
Confidence 6666677777777777876666664 566643
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.80 E-value=3e-08 Score=96.96 Aligned_cols=104 Identities=15% Similarity=0.127 Sum_probs=77.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD---GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
+|+|+|+|| |+||+.+++.|+++|. .|++.+|+.++.......... ....++..+.+|++|.+++.+++++.++
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~--~~~~~~~~~~~D~~d~~~l~~~l~~~~~ 77 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKA--KGYGEIDITTVDADSIEELVALINEVKP 77 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHH--TTCCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhh--hcCCceEEEEecCCCHHHHHHHHHhhCC
Confidence 368999999 9999999999999983 899999976544333222211 1124688999999999999999998667
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|+||||++... ...++++|.+.+. +++-+|
T Consensus 78 DvVin~ag~~~------------------~~~v~~a~l~~g~--~vvD~a 107 (405)
T 4ina_A 78 QIVLNIALPYQ------------------DLTIMEACLRTGV--PYLDTA 107 (405)
T ss_dssp SEEEECSCGGG------------------HHHHHHHHHHHTC--CEEESS
T ss_pred CEEEECCCccc------------------ChHHHHHHHHhCC--CEEEec
Confidence 99999997521 1357788888876 455443
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.80 E-value=4.4e-08 Score=91.91 Aligned_cols=166 Identities=13% Similarity=0.073 Sum_probs=98.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeC--CCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDN--FNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r--~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
|+|+||||+|++|..++..|+..|. +++++|+ +.++.+...............+.+.. | + .+++++.
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~a-- 71 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G----YEDTAGS-- 71 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C----GGGGTTC--
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C----HHHhCCC--
Confidence 6899999999999999999999885 6888887 43322211111111111123344443 2 2 3456766
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc----cCCCCCCCCCCCCCCCCCCChH
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSV----YGVNKKVPFSEKDRTDQPASLY 231 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~v----yg~~~~~~~~e~~~~~~~~~~Y 231 (424)
|+|||+||..... .......+..|+.++.++++++.+.+.. .+|+++|--+ |-... .. ..++....
T Consensus 72 DvVi~~ag~~~~~--g~~r~dl~~~N~~i~~~i~~~i~~~~p~-~~viv~SNPv~~~~~~~~~-----~~--~~p~~rvi 141 (303)
T 1o6z_A 72 DVVVITAGIPRQP--GQTRIDLAGDNAPIMEDIQSSLDEHNDD-YISLTTSNPVDLLNRHLYE-----AG--DRSREQVI 141 (303)
T ss_dssp SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHTTCSC-CEEEECCSSHHHHHHHHHH-----HS--SSCGGGEE
T ss_pred CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHCCC-cEEEEeCChHHHHHHHHHH-----Hc--CCCHHHee
Confidence 9999999974321 2244678999999999999999999876 5666666211 00000 00 00112223
Q ss_pred HH-HHHHHHHHHHHHHHHhCCcEEEEEeccccCCC
Q 042406 232 AA-TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPW 265 (424)
Q Consensus 232 ~~-sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~ 265 (424)
|. +-+..-++...+++..|+...-|+ +.|+|..
T Consensus 142 G~gt~Ld~~r~~~~la~~l~v~~~~v~-~~v~G~H 175 (303)
T 1o6z_A 142 GFGGRLDSARFRYVLSEEFDAPVQNVE-GTILGEH 175 (303)
T ss_dssp ECCHHHHHHHHHHHHHHHHTCCGGGEE-CCEEECS
T ss_pred ecccchhHHHHHHHHHHHhCcCHHHeE-EEEEeCC
Confidence 33 333334455555566677656666 7788854
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=8.1e-08 Score=79.27 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~ 155 (424)
.++++|+|+|+ |.+|..+++.|.+.|++|++++++.+.. +.....+..++.+|.++.+.+.++ +.+.
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~---------~~~~~~~~~~~~~d~~~~~~l~~~~~~~~-- 71 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKV---------NAYASYATHAVIANATEENELLSLGIRNF-- 71 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHH---------HTTTTTCSEEEECCTTCHHHHHTTTGGGC--
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHH---------HHHHHhCCEEEEeCCCCHHHHHhcCCCCC--
Confidence 45678999998 9999999999999999999999853211 111223457788999998887765 5555
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSS 207 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~ 207 (424)
|+||++++.. ...|. .+++.+++.++. ++|..++.
T Consensus 72 d~vi~~~~~~------------~~~~~----~~~~~~~~~~~~-~ii~~~~~ 106 (144)
T 2hmt_A 72 EYVIVAIGAN------------IQAST----LTTLLLKELDIP-NIWVKAQN 106 (144)
T ss_dssp SEEEECCCSC------------HHHHH----HHHHHHHHTTCS-EEEEECCS
T ss_pred CEEEECCCCc------------hHHHH----HHHHHHHHcCCC-eEEEEeCC
Confidence 9999998641 01222 356667777765 77766653
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=8.4e-08 Score=85.15 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=58.1
Q ss_pred CCCCCeEEEEcC----------------CChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEcc
Q 042406 76 STRGLTVLVTGA----------------AGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD 139 (424)
Q Consensus 76 ~~~~~~vlItGg----------------~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D 139 (424)
.+.||+|||||| +|++|.++++.|+++|++|+++++...- . ...++. .+|
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l-~-----------~~~g~~--~~d 70 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL-P-----------TPPFVK--RVD 70 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC-C-----------CCTTEE--EEE
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCccc-c-----------cCCCCe--EEc
Confidence 468999999999 6999999999999999999999885421 0 012333 468
Q ss_pred CCCHHHHHHHhhc-c-CccEEEEcccccCc
Q 042406 140 INDKSLLDKIFNV-V-AFTHVMHLAAQAGV 167 (424)
Q Consensus 140 l~d~~~v~~~~~~-~-~~d~vi~~Ag~~~~ 167 (424)
+.+.+++.+.+.. . ++|++|||||+...
T Consensus 71 v~~~~~~~~~v~~~~~~~Dili~~Aav~d~ 100 (226)
T 1u7z_A 71 VMTALEMEAAVNASVQQQNIFIGCAAVADY 100 (226)
T ss_dssp CCSHHHHHHHHHHHGGGCSEEEECCBCCSE
T ss_pred cCcHHHHHHHHHHhcCCCCEEEECCcccCC
Confidence 8887765544322 2 46999999998654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.5e-07 Score=75.44 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d 156 (424)
.+++|+|+|+ |.+|+.+++.|.++|++|++++++.+..+. ....++.++.+|.+|++.++++ ++ +.|
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~---------~~~~~~~~~~gd~~~~~~l~~~~~~--~~d 72 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIEL---------LEDEGFDAVIADPTDESFYRSLDLE--GVS 72 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHH---------HHHTTCEEEECCTTCHHHHHHSCCT--TCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHH---------HHHCCCcEEECCCCCHHHHHhCCcc--cCC
Confidence 4678999998 999999999999999999999995432111 1124678899999999988876 23 459
Q ss_pred EEEEccc
Q 042406 157 HVMHLAA 163 (424)
Q Consensus 157 ~vi~~Ag 163 (424)
+||.+.+
T Consensus 73 ~vi~~~~ 79 (141)
T 3llv_A 73 AVLITGS 79 (141)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9998765
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-07 Score=83.80 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=55.2
Q ss_pred CCCeEEEEcC----------------CChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCC
Q 042406 78 RGLTVLVTGA----------------AGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141 (424)
Q Consensus 78 ~~~~vlItGg----------------~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~ 141 (424)
.||+|||||| +|++|.++++.|+++|++|++++|..+... ....++.++ |+.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~----------~~~~~~~~~--~v~ 69 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKP----------EPHPNLSIR--EIT 69 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCC----------CCCTTEEEE--ECC
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccc----------cCCCCeEEE--EHh
Confidence 5899999999 899999999999999999999999543110 001345554 555
Q ss_pred CHHHHHHHhhc-c-CccEEEEcccccCch
Q 042406 142 DKSLLDKIFNV-V-AFTHVMHLAAQAGVR 168 (424)
Q Consensus 142 d~~~v~~~~~~-~-~~d~vi~~Ag~~~~~ 168 (424)
+.+++.+.+.. . +.|++||+||+....
T Consensus 70 s~~em~~~v~~~~~~~Dili~aAAvsD~~ 98 (232)
T 2gk4_A 70 NTKDLLIEMQERVQDYQVLIHSMAVSDYT 98 (232)
T ss_dssp SHHHHHHHHHHHGGGCSEEEECSBCCSEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCcccccc
Confidence 65443333221 1 359999999986643
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.48 E-value=9.1e-07 Score=72.48 Aligned_cols=99 Identities=18% Similarity=0.262 Sum_probs=67.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d 156 (424)
.+|+|+|+|+ |.+|..+++.|.+.|++|++++|+.+... ... ...++.++.+|..+.+.+.+. +++ .|
T Consensus 3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~----~~~----~~~~~~~~~~d~~~~~~l~~~~~~~--~d 71 (140)
T 1lss_A 3 HGMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICK----KAS----AEIDALVINGDCTKIKTLEDAGIED--AD 71 (140)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHH----HHH----HHCSSEEEESCTTSHHHHHHTTTTT--CS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHH----HHH----HhcCcEEEEcCCCCHHHHHHcCccc--CC
Confidence 3578999987 99999999999999999999998543211 111 112567888999998877654 454 49
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
+||++.+. . ..|. .+.+.++..+.. ++|..+
T Consensus 72 ~vi~~~~~---------~----~~~~----~~~~~~~~~~~~-~ii~~~ 102 (140)
T 1lss_A 72 MYIAVTGK---------E----EVNL----MSSLLAKSYGIN-KTIARI 102 (140)
T ss_dssp EEEECCSC---------H----HHHH----HHHHHHHHTTCC-CEEEEC
T ss_pred EEEEeeCC---------c----hHHH----HHHHHHHHcCCC-EEEEEe
Confidence 99998642 0 1222 355566666665 666543
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.46 E-value=6.4e-07 Score=88.60 Aligned_cols=107 Identities=19% Similarity=0.104 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++|+|+|+| +|++|+++++.|++.|++|++++|+.++... . .. ...++..+.+|++|.+++.++++++ |+
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~----l-a~--~~~~~~~~~~Dv~d~~~l~~~l~~~--Dv 71 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKK----L-SA--GVQHSTPISLDVNDDAALDAEVAKH--DL 71 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHH----T-TT--TCTTEEEEECCTTCHHHHHHHHTTS--SE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHH----H-HH--hcCCceEEEeecCCHHHHHHHHcCC--cE
Confidence 468899998 7999999999999999999999995422111 1 11 1124778999999999999999855 99
Q ss_pred EEEcccccCchhhccChHHHHHH--H-------HHHHHHHHHHHHhcCC
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVES--N-------IAGFVNLLETCKSSDP 197 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~--N-------~~g~~~ll~a~~~~~~ 197 (424)
||||++...... -....+.. | ...+.+++++|++.++
T Consensus 72 VIn~a~~~~~~~---i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv 117 (450)
T 1ff9_A 72 VISLIPYTFHAT---VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGI 117 (450)
T ss_dssp EEECCC--CHHH---HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTC
T ss_pred EEECCccccchH---HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCC
Confidence 999998643210 01122221 1 1356788999999875
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.42 E-value=9.4e-07 Score=85.19 Aligned_cols=95 Identities=20% Similarity=0.136 Sum_probs=71.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
-+.|+|+|.|| |++|+.+++.|.+ .++|.+.+|+.+..+. ....+..+.+|+.|.+++.+++++. |
T Consensus 14 g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~----------~~~~~~~~~~d~~d~~~l~~~~~~~--D 79 (365)
T 3abi_A 14 GRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEK----------VKEFATPLKVDASNFDKLVEVMKEF--E 79 (365)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHH----------HTTTSEEEECCTTCHHHHHHHHTTC--S
T ss_pred CCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHH----------HhccCCcEEEecCCHHHHHHHHhCC--C
Confidence 34578999998 9999999998855 5899999985432211 1245678899999999999999987 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
+|||+++... ...++++|.+++. ++|=+|
T Consensus 80 vVi~~~p~~~------------------~~~v~~~~~~~g~--~yvD~s 108 (365)
T 3abi_A 80 LVIGALPGFL------------------GFKSIKAAIKSKV--DMVDVS 108 (365)
T ss_dssp EEEECCCGGG------------------HHHHHHHHHHHTC--EEEECC
T ss_pred EEEEecCCcc------------------cchHHHHHHhcCc--ceEeee
Confidence 9999986521 1357888988885 676555
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.9e-06 Score=79.85 Aligned_cols=116 Identities=20% Similarity=0.122 Sum_probs=79.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|+|.|+||+|++|..++..|+..| .+|+++|++. ...... ..........+..+. ...+.++++++. |+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~-dL~~~~~~~~l~~~~----~t~d~~~a~~~a--Dv 71 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAA-DLSHIETRATVKGYL----GPEQLPDCLKGC--DV 71 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHH-HHTTSSSSCEEEEEE----SGGGHHHHHTTC--SE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHH-HHhccCcCceEEEec----CCCCHHHHhCCC--CE
Confidence 689999999999999999999998 7899999965 111111 111111111122211 113466678877 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
||++||..... .......+..|+..+..+++.+.+.....+||++|-
T Consensus 72 Vvi~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 72 VVIPAGVPRKP--GMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp EEECCSCCCCT--TCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEECCCcCCCC--CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 99999974322 223356789999999999999998876667887764
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=7.8e-07 Score=84.20 Aligned_cols=171 Identities=12% Similarity=0.124 Sum_probs=101.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--e-----EEEEeCCCC--chhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHh
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD--G-----VLGLDNFNN--YYETSLKKARKGLLERAGVFVIDADINDKSLLDKIF 150 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~--~-----V~~~~r~~~--~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~ 150 (424)
++|+||||+|+||.+++..|+..|. + ++++|++.. .......... . ...+-+. ++...+...+.+
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~-~-~~~~~~~----~~~~~~~~~~~~ 77 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQ-D-CALPLLK----DVIATDKEEIAF 77 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHH-H-TCCTTEE----EEEEESCHHHHT
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhH-h-hhhcccC----CEEEcCCcHHHh
Confidence 6899999999999999999998875 5 899988432 1111111111 1 0111121 222223356678
Q ss_pred hccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEecCCc---ccCCCCCCCCCCCCCCCC
Q 042406 151 NVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP-AIVWASSSS---VYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 151 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~-~~v~~SS~~---vyg~~~~~~~~e~~~~~~ 226 (424)
++. |+||++||.... .-.+..+.++.|...+.++++++.+++... +++.+|... .|-... .. ...
T Consensus 78 ~da--DvVvitAg~prk--pG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~~~------~~-~~~ 146 (333)
T 5mdh_A 78 KDL--DVAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASK------SA-PSI 146 (333)
T ss_dssp TTC--SEEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHH------TC-TTS
T ss_pred CCC--CEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHHHH------Hc-CCC
Confidence 877 999999986432 223456789999999999999999998754 477777521 110000 00 001
Q ss_pred CCChH-HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 227 PASLY-AATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 227 ~~~~Y-~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
|.... +.+-+..-++-..+++..|+....|+-..|+|..++
T Consensus 147 p~~~ig~~t~LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd 188 (333)
T 5mdh_A 147 PKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS 188 (333)
T ss_dssp CGGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred CcCEEEEEEhHHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC
Confidence 11112 233444445555566666877777775556886554
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-05 Score=67.70 Aligned_cols=77 Identities=16% Similarity=0.271 Sum_probs=58.8
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhc-cCCeEEEEccCCCHHHHHHH-hhc
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLE-RAGVFVIDADINDKSLLDKI-FNV 152 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~v~~~-~~~ 152 (424)
....+++|+|+|+ |.+|..+++.|.+.|++|++++|+.+.... .. ..++.++.+|..+.+.+.++ +++
T Consensus 15 ~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~---------~~~~~g~~~~~~d~~~~~~l~~~~~~~ 84 (155)
T 2g1u_A 15 KKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHR---------LNSEFSGFTVVGDAAEFETLKECGMEK 84 (155)
T ss_dssp --CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGG---------SCTTCCSEEEESCTTSHHHHHTTTGGG
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHH---------HHhcCCCcEEEecCCCHHHHHHcCccc
Confidence 4567789999996 999999999999999999999996543211 12 24567788999998877765 555
Q ss_pred cCccEEEEccc
Q 042406 153 VAFTHVMHLAA 163 (424)
Q Consensus 153 ~~~d~vi~~Ag 163 (424)
. |+||.+.+
T Consensus 85 a--d~Vi~~~~ 93 (155)
T 2g1u_A 85 A--DMVFAFTN 93 (155)
T ss_dssp C--SEEEECSS
T ss_pred C--CEEEEEeC
Confidence 5 99999875
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.1e-06 Score=83.03 Aligned_cols=79 Identities=27% Similarity=0.255 Sum_probs=60.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.+++|+|+|+|+ |++|+.++..|++. |++|++++|+.++... .... .++.++.+|+.|.+++.++++++
T Consensus 20 ~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~----la~~----~~~~~~~~D~~d~~~l~~~l~~~- 89 (467)
T 2axq_A 20 RHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQA----LAKP----SGSKAISLDVTDDSALDKVLADN- 89 (467)
T ss_dssp ---CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHH----HHGG----GTCEEEECCTTCHHHHHHHHHTS-
T ss_pred CCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHH----HHHh----cCCcEEEEecCCHHHHHHHHcCC-
Confidence 456789999997 99999999999998 7899999996432211 1111 24677889999999999998866
Q ss_pred ccEEEEccccc
Q 042406 155 FTHVMHLAAQA 165 (424)
Q Consensus 155 ~d~vi~~Ag~~ 165 (424)
|+|||+++..
T Consensus 90 -DvVIn~tp~~ 99 (467)
T 2axq_A 90 -DVVISLIPYT 99 (467)
T ss_dssp -SEEEECSCGG
T ss_pred -CEEEECCchh
Confidence 9999999864
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.29 E-value=6e-06 Score=78.29 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=78.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
+++++|.|+|++|++|..++..++..| .+|+++|++.++................++.+ .....+++++.
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-------t~d~~~al~dA- 77 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-------TSDIKEALTDA- 77 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-------ESCHHHHHTTE-
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-------cCCHHHHhCCC-
Confidence 456899999999999999999999998 58999998654333222111111111112221 12345667777
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCe-EEEecC
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA-IVWASS 206 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~-~v~~SS 206 (424)
|+||.+||.... .-....+.+..|......+++.+.+...... ++.+|.
T Consensus 78 -DvVvitaG~p~k--pG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 78 -KYIVSSGGAPRK--EGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp -EEEEECCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred -CEEEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 999999996321 2234567899999999999999998887654 566664
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.24 E-value=6.3e-06 Score=68.88 Aligned_cols=78 Identities=23% Similarity=0.266 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d 156 (424)
..++|+|+|+ |.+|+.+++.|.+.|++|++++++....... .. .....++.++.+|.+|++.+.++ +++. |
T Consensus 2 ~~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~---~~--~~~~~~~~~i~gd~~~~~~l~~a~i~~a--d 73 (153)
T 1id1_A 2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQ---LE--QRLGDNADVIPGDSNDSSVLKKAGIDRC--R 73 (153)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHH---HH--HHHCTTCEEEESCTTSHHHHHHHTTTTC--S
T ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHH---HH--HhhcCCCeEEEcCCCCHHHHHHcChhhC--C
Confidence 3467999996 9999999999999999999999853210001 11 11124689999999999998887 7766 9
Q ss_pred EEEEccc
Q 042406 157 HVMHLAA 163 (424)
Q Consensus 157 ~vi~~Ag 163 (424)
+||.+.+
T Consensus 74 ~vi~~~~ 80 (153)
T 1id1_A 74 AILALSD 80 (153)
T ss_dssp EEEECSS
T ss_pred EEEEecC
Confidence 9998764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=2.8e-06 Score=74.26 Aligned_cols=101 Identities=19% Similarity=0.148 Sum_probs=65.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh---ccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN---VVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~---~~~ 154 (424)
.+++|+|+||+|+||..+++.+...|++|++++|+.+..+ ..+ + . +... ..|..+.+..+.+.+ +.+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~----~~~-~-~---g~~~-~~d~~~~~~~~~~~~~~~~~~ 107 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKRE----MLS-R-L---GVEY-VGDSRSVDFADEILELTDGYG 107 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHH----HHH-T-T---CCSE-EEETTCSTHHHHHHHHTTTCC
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHH----HHH-H-c---CCCE-EeeCCcHHHHHHHHHHhCCCC
Confidence 5788999999999999999999999999999998543211 111 1 1 2222 247766554444433 225
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSV 209 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~v 209 (424)
+|+||+|+|. . .....++.++..| ++|.+++...
T Consensus 108 ~D~vi~~~g~---~---------------~~~~~~~~l~~~G---~~v~~g~~~~ 141 (198)
T 1pqw_A 108 VDVVLNSLAG---E---------------AIQRGVQILAPGG---RFIELGKKDV 141 (198)
T ss_dssp EEEEEECCCT---H---------------HHHHHHHTEEEEE---EEEECSCGGG
T ss_pred CeEEEECCch---H---------------HHHHHHHHhccCC---EEEEEcCCCC
Confidence 7999999873 1 1233445555433 8888887543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.2e-05 Score=69.37 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=58.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH--hhc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI--FNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~--~~~ 152 (424)
...+++|+|+|+ |.+|..+++.|.+. |++|++++++.+.... ....++.++.+|.++.+.+.++ +++
T Consensus 36 ~~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~---------~~~~g~~~~~gd~~~~~~l~~~~~~~~ 105 (183)
T 3c85_A 36 NPGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQ---------HRSEGRNVISGDATDPDFWERILDTGH 105 (183)
T ss_dssp CCTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHH---------HHHTTCCEEECCTTCHHHHHTBCSCCC
T ss_pred CCCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHH---------HHHCCCCEEEcCCCCHHHHHhccCCCC
Confidence 355778999985 99999999999999 9999999995432111 1124677888999998887776 555
Q ss_pred cCccEEEEccc
Q 042406 153 VAFTHVMHLAA 163 (424)
Q Consensus 153 ~~~d~vi~~Ag 163 (424)
. |+||.+.+
T Consensus 106 a--d~vi~~~~ 114 (183)
T 3c85_A 106 V--KLVLLAMP 114 (183)
T ss_dssp C--CEEEECCS
T ss_pred C--CEEEEeCC
Confidence 4 99998764
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4.5e-05 Score=71.81 Aligned_cols=117 Identities=19% Similarity=0.135 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..|+|.|+|+ |.+|..++..|+..|. +|+++|++.+..+......... .....++.....| . +.+++.
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~----~a~~~a- 74 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y----EDCKDA- 74 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G----GGGTTC-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H----HHhCCC-
Confidence 4678999996 9999999999999986 8999999654333222112211 1111344544333 2 356666
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+||.+||.... .-.+..+.+..|..-...+++.+.+......++.+|-
T Consensus 75 -DvVvi~ag~p~k--pG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 75 -DIVCICAGANQK--PGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp -SEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred -CEEEEecccCCC--CCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 999999986321 1234567899999999999999998877656776664
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.00 E-value=7.6e-05 Score=61.22 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=57.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCccE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFTH 157 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d~ 157 (424)
.++|+|.|+ |.+|..+++.|.+.|++|++++++.+..+. ....++.++.+|.++.+.+.++ +++. |+
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~---------~~~~g~~~i~gd~~~~~~l~~a~i~~a--d~ 74 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDE---------LRERGVRAVLGNAANEEIMQLAHLECA--KW 74 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHH---------HHHTTCEEEESCTTSHHHHHHTTGGGC--SE
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHH---------HHHcCCCEEECCCCCHHHHHhcCcccC--CE
Confidence 357999997 999999999999999999999996432211 1225788999999999988775 4444 99
Q ss_pred EEEccc
Q 042406 158 VMHLAA 163 (424)
Q Consensus 158 vi~~Ag 163 (424)
||-+.+
T Consensus 75 vi~~~~ 80 (140)
T 3fwz_A 75 LILTIP 80 (140)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 987754
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=3.2e-05 Score=72.79 Aligned_cols=119 Identities=15% Similarity=0.098 Sum_probs=70.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
...+++|.|+|+ |.+|..++..|+..|. +|+++|++.+..+...............+.....| . +.+++.
T Consensus 6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~---~----~a~~~a 77 (326)
T 3vku_A 6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE---Y----SDAKDA 77 (326)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC---G----GGGTTC
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc---H----HHhcCC
Confidence 346789999997 9999999999999986 89999986543332222221111111244444332 2 356666
Q ss_pred CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 154 AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+||.+||.... .-.+..+.+..|..-...+.+.+.+......++.+|-
T Consensus 78 --DiVvi~ag~~~k--pG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 78 --DLVVITAGAPQK--PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp --SEEEECCCCC------------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred --CEEEECCCCCCC--CCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 999999996321 1223456788899989999999998877656776664
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=5e-05 Score=71.05 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=59.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCC---chhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNN---YYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~---~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
.+++|+++|+|+ |++|+.++..|++.|. +|++++|+.+ +.+....... ...++.+...++.+.+.+.+.+.
T Consensus 151 ~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~----~~~~~~~~~~~~~~~~~l~~~l~ 225 (315)
T 3tnl_A 151 DIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKIN----SKTDCKAQLFDIEDHEQLRKEIA 225 (315)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHH----HHSSCEEEEEETTCHHHHHHHHH
T ss_pred CccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhh----hhcCCceEEeccchHHHHHhhhc
Confidence 467999999997 8999999999999998 8999999732 2222211111 11234455567888788888888
Q ss_pred ccCccEEEEcccc
Q 042406 152 VVAFTHVMHLAAQ 164 (424)
Q Consensus 152 ~~~~d~vi~~Ag~ 164 (424)
+. |+|||+...
T Consensus 226 ~a--DiIINaTp~ 236 (315)
T 3tnl_A 226 ES--VIFTNATGV 236 (315)
T ss_dssp TC--SEEEECSST
T ss_pred CC--CEEEECccC
Confidence 66 999998764
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.83 E-value=3.2e-05 Score=68.58 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=56.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d~v 158 (424)
|+|+|+|+ |.+|+.+++.|.++|++|++++++.+.... .. ...++.++.+|.+|.+.+.++ +++. |+|
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~----l~----~~~~~~~i~gd~~~~~~l~~a~i~~a--d~v 69 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEE----FA----KKLKATIIHGDGSHKEILRDAEVSKN--DVV 69 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHH----HH----HHSSSEEEESCTTSHHHHHHHTCCTT--CEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHH----HH----HHcCCeEEEcCCCCHHHHHhcCcccC--CEE
Confidence 67999997 999999999999999999999985432211 11 123678999999999998876 5555 999
Q ss_pred EEccc
Q 042406 159 MHLAA 163 (424)
Q Consensus 159 i~~Ag 163 (424)
|-+.+
T Consensus 70 i~~~~ 74 (218)
T 3l4b_C 70 VILTP 74 (218)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 97653
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00019 Score=67.48 Aligned_cols=119 Identities=10% Similarity=0.052 Sum_probs=78.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhh-hccCCeEEE-EccCCCHHHHHHHhhc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGL-LERAGVFVI-DADINDKSLLDKIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~-~~Dl~d~~~v~~~~~~ 152 (424)
++++++|.|+|+ |.+|..++..|+..|. +|+++|++.+..+.......... .......+. ..| . +++++
T Consensus 4 ~m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d---~----~a~~~ 75 (324)
T 3gvi_A 4 SMARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGAND---Y----AAIEG 75 (324)
T ss_dssp --CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESS---G----GGGTT
T ss_pred CCcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCC---H----HHHCC
Confidence 356789999998 9999999999999998 99999998766442222211111 111122222 223 2 45676
Q ss_pred cCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 153 VAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 153 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
. |+||.+||..... -....+.+..|..-...+++.+.+......++.+|-
T Consensus 76 a--DiVIiaag~p~k~--G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 76 A--DVVIVTAGVPRKP--GMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp C--SEEEECCSCCCC-------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred C--CEEEEccCcCCCC--CCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 6 9999999863211 123346788899999999999988876657776664
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.81 E-value=7.4e-05 Score=71.90 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=58.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
...+++|+|+|+ |.||..+++.|...|++|++++|+.++.+.. . +... .. +.+|..+.+.+.+++.+.
T Consensus 163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~----~-~~~g-~~---~~~~~~~~~~l~~~~~~~-- 230 (369)
T 2eez_A 163 GVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYL----D-DVFG-GR---VITLTATEANIKKSVQHA-- 230 (369)
T ss_dssp BBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----H-HHTT-TS---EEEEECCHHHHHHHHHHC--
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHH----H-HhcC-ce---EEEecCCHHHHHHHHhCC--
Confidence 366799999999 9999999999999999999999964322111 1 1111 11 456888888999998877
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+||++++..
T Consensus 231 DvVi~~~g~~ 240 (369)
T 2eez_A 231 DLLIGAVLVP 240 (369)
T ss_dssp SEEEECCC--
T ss_pred CEEEECCCCC
Confidence 9999999863
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=2.8e-05 Score=73.72 Aligned_cols=78 Identities=23% Similarity=0.234 Sum_probs=52.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc---c
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV---V 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~---~ 153 (424)
..+++|+||||+|+||..+++.+...|++|++++++.++.+. . ... +.. ..+|..+.+.+.+.+.+ -
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~----~--~~~---g~~-~~~d~~~~~~~~~~~~~~~~~ 213 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY----L--KQI---GFD-AAFNYKTVNSLEEALKKASPD 213 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHH----H--HHT---TCS-EEEETTSCSCHHHHHHHHCTT
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH----H--Hhc---CCc-EEEecCCHHHHHHHHHHHhCC
Confidence 357899999999999999999999999999999985432211 1 111 111 23477663333333321 2
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
++|+||+|+|.
T Consensus 214 ~~d~vi~~~g~ 224 (333)
T 1v3u_A 214 GYDCYFDNVGG 224 (333)
T ss_dssp CEEEEEESSCH
T ss_pred CCeEEEECCCh
Confidence 57999999983
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00018 Score=66.63 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=78.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhh-ccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLL-ERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+|.|+|+ |.+|..++..|+..|. +|+++|++.+..+........... ......+... +| .+++++. |
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~~a~~~a--D 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--AD----YSLLKGS--E 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SC----GGGGTTC--S
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CC----HHHhCCC--C
Confidence 68999999 9999999999999997 899999976543321111111110 1122222211 12 3456766 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
+||.+||.... .-.+..+.+..|..-...+.+.+.+.+....++.+|.
T Consensus 72 iVViaag~~~k--pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 72 IIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EEEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 99999987421 1234567889999999999999999877667777775
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00037 Score=65.44 Aligned_cols=119 Identities=15% Similarity=0.089 Sum_probs=80.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
++.|+|.|+|+ |.+|..++..|+..|. +|+++|++.+..+.......... .......+... .|. +++++.
T Consensus 3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t--~d~----~a~~~a- 74 (321)
T 3p7m_A 3 MARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT--NDY----KDLENS- 74 (321)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCG----GGGTTC-
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc--CCH----HHHCCC-
Confidence 34678999995 9999999999999988 99999998765433222221111 11122233211 122 466766
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+||.+||.... .-....+.+..|..-...+++.+.+......++.+|-
T Consensus 75 -DvVIi~ag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 75 -DVVIVTAGVPRK--PGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp -SEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred -CEEEEcCCcCCC--CCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 999999986432 1224467888999999999999988876656776653
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00038 Score=65.55 Aligned_cols=120 Identities=15% Similarity=0.154 Sum_probs=79.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
....++|.|+|+ |.+|..++..|+.+|. +|+++|++.+..+..................+.. .|++ .+++.
T Consensus 16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~--~d~~----~~~~a 88 (331)
T 4aj2_A 16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSS--KDYS----VTANS 88 (331)
T ss_dssp -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEEC--SSGG----GGTTE
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEc--CCHH----HhCCC
Confidence 456789999998 9999999999999986 8999998654333222222111101111122222 2332 46666
Q ss_pred CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 154 AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+||.+||.... .-....+.+..|..-...+.+.+.+......++.+|-
T Consensus 89 --DiVvi~aG~~~k--pG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 89 --KLVIITAGARQQ--EGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp --EEEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred --CEEEEccCCCCC--CCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999997432 2234567899999999999999988876657777764
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=3.2e-05 Score=73.13 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh---ccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN---VVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~---~~~ 154 (424)
.+++|+|+||+|+||..+++.+...|++|++++|+.++.+.. + + .. .. ...|..+.+..+++.+ +.+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~----~-~-~g---~~-~~~~~~~~~~~~~~~~~~~~~~ 209 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA----L-K-AG---AW-QVINYREEDLVERLKEITGGKK 209 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH----H-H-HT---CS-EEEETTTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----H-H-cC---CC-EEEECCCccHHHHHHHHhCCCC
Confidence 578999999999999999999999999999999854322111 1 1 11 11 1246666544444433 335
Q ss_pred ccEEEEccc
Q 042406 155 FTHVMHLAA 163 (424)
Q Consensus 155 ~d~vi~~Ag 163 (424)
+|+||+|+|
T Consensus 210 ~D~vi~~~g 218 (327)
T 1qor_A 210 VRVVYDSVG 218 (327)
T ss_dssp EEEEEECSC
T ss_pred ceEEEECCc
Confidence 799999998
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.69 E-value=4.2e-05 Score=72.95 Aligned_cols=76 Identities=26% Similarity=0.232 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH----HHHHhhcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL----LDKIFNVV 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~----v~~~~~~~ 153 (424)
.+++|+|+||+|.||..+++.+...|++|++++|+.++.+.. + + . +.. ...|+.+.++ +.++..+
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~----~-~-~---g~~-~~~d~~~~~~~~~~~~~~~~~- 237 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELF----R-S-I---GGE-VFIDFTKEKDIVGAVLKATDG- 237 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHH----H-H-T---TCC-EEEETTTCSCHHHHHHHHHTS-
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHH----H-H-c---CCc-eEEecCccHhHHHHHHHHhCC-
Confidence 578999999999999999999999999999999876543211 1 1 1 111 2247764333 3333334
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
++|+||+++|.
T Consensus 238 ~~D~vi~~~g~ 248 (347)
T 2hcy_A 238 GAHGVINVSVS 248 (347)
T ss_dssp CEEEEEECSSC
T ss_pred CCCEEEECCCc
Confidence 67999999974
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00011 Score=65.88 Aligned_cols=72 Identities=15% Similarity=0.074 Sum_probs=56.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d 156 (424)
..++|+|+|+ |.+|+.+++.|.+.|+ |++++++.+... ... .++.++.+|.+|.+.++++ +++. |
T Consensus 8 ~~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~---------~~~-~~~~~i~gd~~~~~~l~~a~i~~a--d 73 (234)
T 2aef_A 8 KSRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK---------VLR-SGANFVHGDPTRVSDLEKANVRGA--R 73 (234)
T ss_dssp --CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHH---------HHH-TTCEEEESCTTCHHHHHHTTCTTC--S
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHH---------HHh-cCCeEEEcCCCCHHHHHhcCcchh--c
Confidence 3468999998 9999999999999999 999998543211 111 4688999999999998877 6666 9
Q ss_pred EEEEccc
Q 042406 157 HVMHLAA 163 (424)
Q Consensus 157 ~vi~~Ag 163 (424)
.||.+.+
T Consensus 74 ~vi~~~~ 80 (234)
T 2aef_A 74 AVIVDLE 80 (234)
T ss_dssp EEEECCS
T ss_pred EEEEcCC
Confidence 9997753
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00031 Score=65.79 Aligned_cols=119 Identities=18% Similarity=0.129 Sum_probs=78.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCC--CchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFN--NYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~--~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
++.++|.|+|+ |.+|..++..|+..|+ +|+++|++. ............. ........+... .|. +.+++
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t--~d~----~a~~~ 78 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT--SDY----ADTAD 78 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE--SCG----GGGTT
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc--CCH----HHhCC
Confidence 45689999997 9999999999999999 999999962 2221111111110 011112222211 122 35666
Q ss_pred cCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 153 VAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 153 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
. |+||.+||....+ -.+..+.+..|..-...+.+.+.+......++.+|.
T Consensus 79 a--DvVIiaag~p~kp--g~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 79 S--DVVVITAGIARKP--GMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp C--SEEEECCSCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred C--CEEEEeCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 6 9999999874321 234567899999999999999988876657777664
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00046 Score=64.78 Aligned_cols=117 Identities=17% Similarity=0.145 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+..|+|.|+|| |.+|..++..|+..| .+|.++|++.+..+......... ......+.+.. | + .+++++.
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~----~~a~~~a 75 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E----YSDCHDA 75 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C----GGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C----HHHhCCC
Confidence 35579999999 999999999999988 48999998654333211111111 11113334432 2 3 3446766
Q ss_pred CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 154 AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|+||.++|..... -......+..|..-...+.+.+.+......++.+|
T Consensus 76 --DvVvi~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 76 --DLVVICAGAAQKP--GETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp --SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred --CEEEECCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 9999999874321 23345678889999999999998887665666544
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=6.8e-05 Score=71.68 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHH---HhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDK---IFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~---~~~~~~ 154 (424)
.+++|+|+||+|+||..+++.+...|++|++++++.++.+. . ..+ +.. ...|..+.+..++ ...+.+
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~----~--~~~---ga~-~~~d~~~~~~~~~~~~~~~~~~ 239 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKI----V--LQN---GAH-EVFNHREVNYIDKIKKYVGEKG 239 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH----H--HHT---TCS-EEEETTSTTHHHHHHHHHCTTC
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHH----H--HHc---CCC-EEEeCCCchHHHHHHHHcCCCC
Confidence 57899999999999999999999999999999986432221 1 111 111 2246666443333 333335
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+||+|+|.
T Consensus 240 ~D~vi~~~G~ 249 (351)
T 1yb5_A 240 IDIIIEMLAN 249 (351)
T ss_dssp EEEEEESCHH
T ss_pred cEEEEECCCh
Confidence 7999999973
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.66 E-value=7.9e-05 Score=70.95 Aligned_cols=99 Identities=15% Similarity=0.108 Sum_probs=64.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---HHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS---LLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~v~~~~~~~~ 154 (424)
.+++|||+||+|.||..+++.+...|++|++++++.++.+.. + ... ... ..|..+.+ .+.+.....+
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~----~--~~g---a~~-~~d~~~~~~~~~~~~~~~~~~ 235 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRA----K--ALG---ADE-TVNYTHPDWPKEVRRLTGGKG 235 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH----H--HHT---CSE-EEETTSTTHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----H--hcC---CCE-EEcCCcccHHHHHHHHhCCCC
Confidence 578899999999999999999999999999999864332211 1 111 111 24666543 3334333336
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSS 207 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~ 207 (424)
+|+||+++|. .. ....++.++..+ ++|.+++.
T Consensus 236 ~d~vi~~~g~-~~-----------------~~~~~~~l~~~G---~~v~~g~~ 267 (343)
T 2eih_A 236 ADKVVDHTGA-LY-----------------FEGVIKATANGG---RIAIAGAS 267 (343)
T ss_dssp EEEEEESSCS-SS-----------------HHHHHHHEEEEE---EEEESSCC
T ss_pred ceEEEECCCH-HH-----------------HHHHHHhhccCC---EEEEEecC
Confidence 7999999982 21 233455555443 78877764
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0005 Score=64.74 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
+.++|.|+|| |.+|..++..|+..+. +|+++|++.++.+...............+.+.. | + .+++++.
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~--~----~~a~~~a-- 77 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A--E----YSDAKDA-- 77 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGGGC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCC--
Confidence 4578999999 9999999999998885 899999965444332222211111113444443 2 2 3447777
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+||..++.... .-......+..|..-...+.+.+.+......++.+|-
T Consensus 78 DvVii~ag~~~k--~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 78 DLVVITAGAPQK--PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp SEEEECCCCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred CEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 999999987332 1233456788899999999999988876657777654
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0004 Score=65.27 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=73.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
+.++|.|+|+ |++|..++..|+..|. +|+++|++.++.+...............+.+.. .+ .+++++.
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~---~~----~~a~~~a-- 75 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA---GD----YSDVKDC-- 75 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C----GGGGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE---CC----HHHhCCC--
Confidence 3478999998 9999999999999987 899999987655432222211110112333321 23 3347766
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|+||.+++.... ......+.+..|+.....+++.+.+......++.+|
T Consensus 76 DvVii~~g~p~k--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 76 DVIVVTAGANRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp SEEEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred CEEEEcCCCCCC--CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 999999986321 122345678899999999999998876654555543
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00051 Score=64.20 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=77.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+|.|+|+ |.+|..++..|+..|. +|+++|++.+............ ......+.+...| + .+.+++. |
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~----~~a~~~a--D 71 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D----YGPTEDS--D 71 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S----SGGGTTC--S
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C----HHHhCCC--C
Confidence 68999997 9999999999999986 8999999876543322222111 1111233333222 2 2356666 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
+||.+||.... .-.+..+.+..|..-...+.+.+.+......++.+|-
T Consensus 72 vVii~ag~~~k--pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 72 VCIITAGLPRS--PGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp EEEECCCC---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred EEEECCCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 99999987321 1233467889999999999999998876656776664
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.63 E-value=9.1e-05 Score=70.18 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=53.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH---HHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL---LDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---v~~~~~~~~ 154 (424)
.+++|+|+||+|+||..+++.+...|++|++++|+.++.+.. + + .. .. ...|..+.+. +.+.....+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~----~-~-~g---~~-~~~d~~~~~~~~~i~~~~~~~~ 214 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETA----R-K-LG---CH-HTINYSTQDFAEVVREITGGKG 214 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH----H-H-HT---CS-EEEETTTSCHHHHHHHHHTTCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----H-H-cC---CC-EEEECCCHHHHHHHHHHhCCCC
Confidence 578899999999999999999999999999999964322211 1 1 11 11 1236665443 333333336
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+||+|+|.
T Consensus 215 ~d~vi~~~g~ 224 (333)
T 1wly_A 215 VDVVYDSIGK 224 (333)
T ss_dssp EEEEEECSCT
T ss_pred CeEEEECCcH
Confidence 7999999985
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=4.5e-05 Score=63.97 Aligned_cols=73 Identities=15% Similarity=0.098 Sum_probs=52.3
Q ss_pred ChhHHHHHHHHHhCCCeEEEEeCCCCchhh---hHHHHHhhhhccCCeEEEEccCCCH--HHHHHHhhcc----CccEEE
Q 042406 89 GFVGSHVSLALKKRGDGVLGLDNFNNYYET---SLKKARKGLLERAGVFVIDADINDK--SLLDKIFNVV----AFTHVM 159 (424)
Q Consensus 89 G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~v~~~~~Dl~d~--~~v~~~~~~~----~~d~vi 159 (424)
|.++..+++.|++.|++|++..|....... ....... .+..+..+.+|++++ +++.++++.+ +-|++|
T Consensus 26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~---~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLV 102 (157)
T 3gxh_A 26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQ---AGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLV 102 (157)
T ss_dssp BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHH---TTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEE
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHH---cCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 578999999999999999998886543221 1111111 134567788999999 8888877644 239999
Q ss_pred Ecccc
Q 042406 160 HLAAQ 164 (424)
Q Consensus 160 ~~Ag~ 164 (424)
||||.
T Consensus 103 nnAgg 107 (157)
T 3gxh_A 103 HCLAN 107 (157)
T ss_dssp ECSBS
T ss_pred ECCCC
Confidence 99986
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00047 Score=64.70 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=75.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.++|.|+|| |.+|..++..|+..+. +|+++|++.++.+...............+.+.. | + .+++++. |
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~a--D 74 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--E----YSDCKDA--D 74 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--C----GGGGTTC--S
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCC--C
Confidence 378999999 9999999999999885 899999965444332222221111113444443 2 2 3447766 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
+||..++..... -....+.+..|..-...+.+.+.+......++.+|-
T Consensus 75 vVii~ag~~~~~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 75 LVVITAGAPQKP--GESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp EEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred EEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 999999874321 122345778899999999999998877667776654
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0004 Score=64.90 Aligned_cols=116 Identities=17% Similarity=0.099 Sum_probs=76.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-C--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKR-G--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~-g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+|.|+||+|.+|..++..|+.+ + .+++++|++. ....... .... . ...+.+... .+ +...+.+++. |
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~-Dl~~-~-~~~~~v~~~-~~--~~~~~~~~~a--D 71 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAV-DLSH-I-PTAVKIKGF-SG--EDATPALEGA--D 71 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHH-HHHT-S-CSSEEEEEE-CS--SCCHHHHTTC--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHH-HhhC-C-CCCceEEEe-cC--CCcHHHhCCC--C
Confidence 68999999999999999999876 5 5899999865 2221111 1111 1 112222211 01 1124566766 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
+||-+||.... .-.+..+.+..|..-...+.+.+.+......++.+|-
T Consensus 72 ivii~ag~~rk--pG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 72 VVLISAGVARK--PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp EEEECCSCSCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 99999987431 2234578999999999999999988876656777664
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00011 Score=69.64 Aligned_cols=79 Identities=22% Similarity=0.209 Sum_probs=52.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh--ccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN--VVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~--~~~ 154 (424)
..+++|||+||+|.||..+++.+...|++|++++++.++.+. .. ..+ +.. ...|..+.+..+.+.+ ..+
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~----~~-~~~---g~~-~~~~~~~~~~~~~~~~~~~~~ 218 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRF----LV-EEL---GFD-GAIDYKNEDLAAGLKRECPKG 218 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH----HH-HTT---CCS-EEEETTTSCHHHHHHHHCTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HH-HHc---CCC-EEEECCCHHHHHHHHHhcCCC
Confidence 357899999999999999999999999999999985432111 10 111 221 1235655443333332 125
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+||+|+|.
T Consensus 219 ~d~vi~~~g~ 228 (336)
T 4b7c_A 219 IDVFFDNVGG 228 (336)
T ss_dssp EEEEEESSCH
T ss_pred ceEEEECCCc
Confidence 7999999974
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=7e-05 Score=65.99 Aligned_cols=73 Identities=15% Similarity=0.167 Sum_probs=48.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|+|+||+|.+|+.+++.|++.|++|++++|+.+..+........ .... .|+. .+++.+++++. |+||
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~-------~~~~-~~~~~~~~~~~--D~Vi 69 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR-IAGD-------ASIT-GMKNEDAAEAC--DIAV 69 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH-HHSS-------CCEE-EEEHHHHHHHC--SEEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-cccc-------CCCC-hhhHHHHHhcC--CEEE
Confidence 5799999999999999999999999999999965433221111000 0000 1121 12345566766 9999
Q ss_pred Eccc
Q 042406 160 HLAA 163 (424)
Q Consensus 160 ~~Ag 163 (424)
++..
T Consensus 70 ~~~~ 73 (212)
T 1jay_A 70 LTIP 73 (212)
T ss_dssp ECSC
T ss_pred EeCC
Confidence 9874
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00037 Score=65.85 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=75.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhh--hhc-cCCeEEEEccCCCHHHHHHHhhcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKG--LLE-RAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~~-~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
..|+|.|+|| |.+|..++..|+..|+ +|+++|++.+..+......... ... ..++... +| +++++++.
T Consensus 8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t----~d---~~ea~~~a 79 (331)
T 1pzg_A 8 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE----YS---YEAALTGA 79 (331)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE----CS---HHHHHTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEe----CC---HHHHhCCC
Confidence 3478999998 9999999999999998 9999999876555422221111 111 1122211 23 34467777
Q ss_pred CccEEEEcccccCchhhcc----ChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 154 AFTHVMHLAAQAGVRYAMQ----NPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~----~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|+||-++|..... ... ........|..-...+.+.+.+......++.+|
T Consensus 80 --DiVi~a~g~p~~~-g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 80 --DCVIVTAGLTKVP-GKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp --SEEEECCSCSSCT-TCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred --CEEEEccCCCCCC-CcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 9999999863211 110 234567788888888888888876543444433
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00015 Score=69.41 Aligned_cols=77 Identities=10% Similarity=0.039 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH---hhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI---FNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~---~~~~~ 154 (424)
.+++|+|+||+|.||..+++.+...|++|++++|+.++.+.. .... .. ..+|..+.+..+++ ..+.+
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~------~~~g---~~-~~~~~~~~~~~~~~~~~~~~~~ 231 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA------EKLG---AA-AGFNYKKEDFSEATLKFTKGAG 231 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH------HHHT---CS-EEEETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH------HHcC---Cc-EEEecCChHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999864332211 1111 11 22466654443333 33335
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+||+|+|.
T Consensus 232 ~d~vi~~~G~ 241 (354)
T 2j8z_A 232 VNLILDCIGG 241 (354)
T ss_dssp EEEEEESSCG
T ss_pred ceEEEECCCc
Confidence 7999999985
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0001 Score=67.65 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=50.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+++|+++|+|+ |++|+.++..|++.|++|++++|+.++......... ....+. ..|+ +++.+ . +.
T Consensus 116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~----~~~~~~--~~~~---~~~~~--~--~~ 181 (271)
T 1nyt_A 116 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFA----HTGSIQ--ALSM---DELEG--H--EF 181 (271)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTG----GGSSEE--ECCS---GGGTT--C--CC
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhh----ccCCee--EecH---HHhcc--C--CC
Confidence 357899999998 889999999999999999999996543322221111 111221 2333 22222 2 45
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+|||+++..
T Consensus 182 DivVn~t~~~ 191 (271)
T 1nyt_A 182 DLIINATSSG 191 (271)
T ss_dssp SEEEECCSCG
T ss_pred CEEEECCCCC
Confidence 9999999864
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00031 Score=68.44 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d 156 (424)
.+++|+|+|. |-+|+.+++.|.+.|++|++++++.+.... ....++.++.+|.++.+.++++ +++. |
T Consensus 3 ~~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~---------~~~~g~~vi~GDat~~~~L~~agi~~A--~ 70 (413)
T 3l9w_A 3 HGMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIET---------LRKFGMKVFYGDATRMDLLESAGAAKA--E 70 (413)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHH---------HHHTTCCCEESCTTCHHHHHHTTTTTC--S
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHH---------HHhCCCeEEEcCCCCHHHHHhcCCCcc--C
Confidence 3467999997 999999999999999999999996532211 1224678999999999998887 5555 9
Q ss_pred EEEEccc
Q 042406 157 HVMHLAA 163 (424)
Q Consensus 157 ~vi~~Ag 163 (424)
+||-+.+
T Consensus 71 ~viv~~~ 77 (413)
T 3l9w_A 71 VLINAID 77 (413)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9987653
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0009 Score=62.58 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=71.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|+|.|+|| |.+|..++..|+..|+ +|+++|++.+..+.......... .......+... +|. +.+++. |+
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~----~a~~~a--D~ 73 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NNY----ADTANS--DV 73 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCG----GGGTTC--SE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC--CCH----HHHCCC--CE
Confidence 68999999 9999999999999997 89999998765543222111110 01112222210 222 346666 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
||.++|..... ..........|......+.+.+.+.... .+|.+.|
T Consensus 74 Vi~a~g~p~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~-a~vi~~t 119 (309)
T 1ur5_A 74 IVVTSGAPRKP--GMSREDLIKVNADITRACISQAAPLSPN-AVIIMVN 119 (309)
T ss_dssp EEECCCC----------CHHHHHHHHHHHHHHHHHGGGCTT-CEEEECC
T ss_pred EEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEcC
Confidence 99999863311 1122456788888889999999888755 4444444
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=2.5e-05 Score=71.71 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh-CCCeEE-EEeCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKK-RGDGVL-GLDNF 112 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~-~g~~V~-~~~r~ 112 (424)
+.|+|+|+|++|.+|+.+++.+.+ .|++++ +++++
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~ 40 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALERE 40 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCT
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 457899999999999999999885 477877 44553
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00071 Score=62.55 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=78.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+|.|+|+ |+||..++..|+.++ .++.++|.+.+............. ........... .|++ .+++. |
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~--~d~~----~~~~a--D 71 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYS----LLKGS--E 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEE--SCGG----GGTTC--S
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecC--CCHH----HhCCC--C
Confidence 78999996 999999999999887 479999986543322211111111 11122222222 1232 46666 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
+||-.||.... .-.+..+.+..|..-.+.+.+.+.++.....++.+|-
T Consensus 72 vVvitAG~prk--pGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 72 IIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EEEECCCCCCC--SSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEEEecCCCCC--CCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 99999997432 2345678999999999999999999887756776665
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00092 Score=62.49 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=77.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|+|.|+|+ |.+|..++..|+..+ .+|+++|++.++.+...............+.+.. | +. +++++. |+
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~~----~a~~~a--D~ 70 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--SY----GDLEGA--RA 70 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--CG----GGGTTE--EE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--CH----HHhCCC--CE
Confidence 68999998 999999999999987 6899999975444332222211111113444443 2 33 347766 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
||..++..... -......+..|..-...+.+.+.+......++.+|-
T Consensus 71 Vii~ag~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 71 VVLAAGVAQRP--GETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp EEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEECCCCCCCC--CcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 99999874321 223456788899999999999988877667777654
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=9.5e-05 Score=70.38 Aligned_cols=78 Identities=21% Similarity=0.207 Sum_probs=51.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCH----HHHHHHhhc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDK----SLLDKIFNV 152 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~----~~v~~~~~~ 152 (424)
..+++|||+||+|.||..+++.+...|++|++++++.++.+. .+. .+ +.. ...|..+. +.+.+...
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~----~~~-~~---g~~-~~~d~~~~~~~~~~~~~~~~- 223 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDL----LKT-KF---GFD-DAFNYKEESDLTAALKRCFP- 223 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH----HHH-TS---CCS-EEEETTSCSCSHHHHHHHCT-
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHH-Hc---CCc-eEEecCCHHHHHHHHHHHhC-
Confidence 367899999999999999999999999999999985432111 110 11 221 12366543 23333322
Q ss_pred cCccEEEEcccc
Q 042406 153 VAFTHVMHLAAQ 164 (424)
Q Consensus 153 ~~~d~vi~~Ag~ 164 (424)
.++|+||+++|.
T Consensus 224 ~~~d~vi~~~g~ 235 (345)
T 2j3h_A 224 NGIDIYFENVGG 235 (345)
T ss_dssp TCEEEEEESSCH
T ss_pred CCCcEEEECCCH
Confidence 257999999973
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00045 Score=64.51 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCc---hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNY---YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~---~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
...+++++|+|+ |++|+.++..|++.|. +|+++.|+.+. .+....... ...+..+...+..+.+.+.+.+.
T Consensus 145 ~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~----~~~~~~v~~~~~~~l~~~~~~l~ 219 (312)
T 3t4e_A 145 DMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVN----ENTDCVVTVTDLADQHAFTEALA 219 (312)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHH----HHSSCEEEEEETTCHHHHHHHHH
T ss_pred CcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhh----hccCcceEEechHhhhhhHhhcc
Confidence 467899999997 9999999999999998 89999997432 222111111 11233444456667555566677
Q ss_pred ccCccEEEEcccc
Q 042406 152 VVAFTHVMHLAAQ 164 (424)
Q Consensus 152 ~~~~d~vi~~Ag~ 164 (424)
+. |+|||+...
T Consensus 220 ~~--DiIINaTp~ 230 (312)
T 3t4e_A 220 SA--DILTNGTKV 230 (312)
T ss_dssp HC--SEEEECSST
T ss_pred Cc--eEEEECCcC
Confidence 66 999998765
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00046 Score=62.43 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCC-------------------CchhhhHHHHHhhhhccCCeEEE
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFN-------------------NYYETSLKKARKGLLERAGVFVI 136 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~v~~~ 136 (424)
+.+++|+|.|+ |++|..+++.|++.|. +|+++|++. .+.+....... .......+..+
T Consensus 29 l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~-~~np~~~v~~~ 106 (249)
T 1jw9_B 29 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALT-RINPHIAITPV 106 (249)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHH-HHCTTSEEEEE
T ss_pred HhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHH-HHCCCcEEEEE
Confidence 45678999997 8999999999999997 899999876 22222211111 11122345566
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg 211 (424)
..++.+ +.+.+++++. |+||.+... ++ .-..+.++|++.+. .+|+.+..+.+|
T Consensus 107 ~~~~~~-~~~~~~~~~~--DvVi~~~d~---------~~--------~~~~l~~~~~~~~~--p~i~~~~~g~~g 159 (249)
T 1jw9_B 107 NALLDD-AELAALIAEH--DLVLDCTDN---------VA--------VRNQLNAGCFAAKV--PLVSGAAIRMEG 159 (249)
T ss_dssp CSCCCH-HHHHHHHHTS--SEEEECCSS---------HH--------HHHHHHHHHHHHTC--CEEEEEEEBTEE
T ss_pred eccCCH-hHHHHHHhCC--CEEEEeCCC---------HH--------HHHHHHHHHHHcCC--CEEEeeeccceE
Confidence 666653 5667778766 999988632 11 12345566777665 477765544433
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00014 Score=69.51 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=50.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH---HHHHhhccCc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL---LDKIFNVVAF 155 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---v~~~~~~~~~ 155 (424)
++|+|+||+|+||..+++.+...|+ +|++++++.++.+. ... .+ +.. ..+|..+.+. +.+...+ ++
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~----~~~-~~---g~~-~~~d~~~~~~~~~~~~~~~~-~~ 231 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCIL----LTS-EL---GFD-AAINYKKDNVAEQLRESCPA-GV 231 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHH----HHH-TS---CCS-EEEETTTSCHHHHHHHHCTT-CE
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHH----HHH-Hc---CCc-eEEecCchHHHHHHHHhcCC-CC
Confidence 7899999999999999999999999 99999985432111 111 11 111 2346665433 3333333 57
Q ss_pred cEEEEccc
Q 042406 156 THVMHLAA 163 (424)
Q Consensus 156 d~vi~~Ag 163 (424)
|+||+|+|
T Consensus 232 d~vi~~~G 239 (357)
T 2zb4_A 232 DVYFDNVG 239 (357)
T ss_dssp EEEEESCC
T ss_pred CEEEECCC
Confidence 99999998
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00062 Score=63.52 Aligned_cols=114 Identities=20% Similarity=0.230 Sum_probs=67.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|+|.|+|+ |.+|..++..|+..|+ +|+++|++.+..................+.+.. .+. +.+++. |+
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~~~----~a~~~a--Dv 70 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH---GGH----SELADA--QV 70 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE---ECG----GGGTTC--SE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE---CCH----HHhCCC--CE
Confidence 58999998 9999999999999998 999999975433221111111100011223322 232 346666 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
||.+++..... -....+.+..|......+++.+.+......+|.+|
T Consensus 71 VIi~~~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 71 VILTAGANQKP--GESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp EEECC--------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred EEEcCCCCCCC--CCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 99999763211 12234567788888888888888776543555544
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0013 Score=61.79 Aligned_cols=117 Identities=13% Similarity=0.063 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEE-EccCCCHHHHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVI-DADINDKSLLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~v~~~~~~~~ 154 (424)
..++|.|+|+ |.+|..++..|+..|. +|+++|++.+...................... ..|+.+ +++.
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-------~~da- 90 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-------SAGS- 90 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-------CSSC-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-------hCCC-
Confidence 5688999999 9999999999999996 89999996554333222221111111112222 334322 5655
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+||-+||....+ -.+..+.+..|..-...+.+.+.+......++.+|-
T Consensus 91 -DiVIitaG~p~kp--G~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 91 -KLVVITAGARQQE--GESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp -SEEEECCSCCCCS--SCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred -CEEEEeCCCCCCC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 9999999974321 233456788898888999999888876656776664
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0026 Score=60.15 Aligned_cols=175 Identities=16% Similarity=0.101 Sum_probs=101.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEeCCCCchh-hhHHHHHhhhhccCCe-EEEEccCCCHHHH
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-------GVLGLDNFNNYYE-TSLKKARKGLLERAGV-FVIDADINDKSLL 146 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~-~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~v 146 (424)
+++.-+|.|+||+|.||+.|+..|+.... ++.++|....... +..... ......+.. ..+..+ | .
T Consensus 21 s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~D-L~~~~~~~~~~~~~~~--~---~ 94 (345)
T 4h7p_A 21 SMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAE-LEDCAFPLLDKVVVTA--D---P 94 (345)
T ss_dssp -CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH-HHHTTCTTEEEEEEES--C---H
T ss_pred CCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhh-hhhcCccCCCcEEEcC--C---h
Confidence 44556899999999999999998887642 6888887432110 000111 111111221 222211 2 3
Q ss_pred HHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCC---ccc--CCCCCCCCCC
Q 042406 147 DKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSS---SVY--GVNKKVPFSE 220 (424)
Q Consensus 147 ~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~---~vy--g~~~~~~~~e 220 (424)
.+++++. |+||-+||...- .-...++.++.|..-.+.+.+...+.. ...+++.+|-. .+| -....
T Consensus 95 ~~a~~~a--dvVvi~aG~prk--pGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~~----- 165 (345)
T 4h7p_A 95 RVAFDGV--AIAIMCGAFPRK--AGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQ----- 165 (345)
T ss_dssp HHHTTTC--SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHTT-----
T ss_pred HHHhCCC--CEEEECCCCCCC--CCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHcc-----
Confidence 5678877 999999997432 234557899999999999999987754 33245566642 111 00000
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
. ..++...-+.+-+..-++-..+++..|+....|+-..|.|..+.
T Consensus 166 -g-~~~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~ 210 (345)
T 4h7p_A 166 -G-KLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS 210 (345)
T ss_dssp -T-CSCGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST
T ss_pred -C-CCCcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC
Confidence 0 00222233344455555566666777887777776677787554
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.44 E-value=7.8e-05 Score=69.12 Aligned_cols=81 Identities=10% Similarity=0.086 Sum_probs=51.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+++|+++|||++ ++|+.++..|++.| +|++++|+.++.+......... ..... .+.+|+.+. .+.+. +.
T Consensus 125 ~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~--~~~~~-~~~~d~~~~---~~~~~--~~ 194 (287)
T 1nvt_A 125 RVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEK--LNKKF-GEEVKFSGL---DVDLD--GV 194 (287)
T ss_dssp CCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHH--HTCCH-HHHEEEECT---TCCCT--TC
T ss_pred CcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhh--ccccc-ceeEEEeeH---HHhhC--CC
Confidence 4578999999985 99999999999999 9999999654433322221110 00000 112333331 22333 45
Q ss_pred cEEEEcccccC
Q 042406 156 THVMHLAAQAG 166 (424)
Q Consensus 156 d~vi~~Ag~~~ 166 (424)
|+||||++...
T Consensus 195 DilVn~ag~~~ 205 (287)
T 1nvt_A 195 DIIINATPIGM 205 (287)
T ss_dssp CEEEECSCTTC
T ss_pred CEEEECCCCCC
Confidence 99999998743
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0005 Score=65.34 Aligned_cols=78 Identities=22% Similarity=0.188 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-HHHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-KSLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~v~~~~~~~~~d 156 (424)
.|++|||+||+|.||..+++.+...|++|++++++.++.+.... +. .-.++..+ .+ .+.+.+...+.++|
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~------~g--a~~v~~~~-~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS------VG--ADIVLPLE-EGWAKAVREATGGAGVD 229 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH------HT--CSEEEESS-TTHHHHHHHHTTTSCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh------cC--CcEEecCc-hhHHHHHHHHhCCCCce
Confidence 57889999999999999999999999999999986654322111 11 11233333 22 23344444444679
Q ss_pred EEEEcccc
Q 042406 157 HVMHLAAQ 164 (424)
Q Consensus 157 ~vi~~Ag~ 164 (424)
+||+++|.
T Consensus 230 vvid~~g~ 237 (342)
T 4eye_A 230 MVVDPIGG 237 (342)
T ss_dssp EEEESCC-
T ss_pred EEEECCch
Confidence 99999985
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00043 Score=63.82 Aligned_cols=80 Identities=18% Similarity=0.151 Sum_probs=55.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..++++++|+|+ |++|+.++..|++.|. +|++++|+.++.+......... ...+.+...+. +++.+.+.+.
T Consensus 124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~---~~~~~i~~~~~---~~l~~~l~~~- 195 (283)
T 3jyo_A 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNA---VGREAVVGVDA---RGIEDVIAAA- 195 (283)
T ss_dssp TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH---HTSCCEEEECS---TTHHHHHHHS-
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhh---cCCceEEEcCH---HHHHHHHhcC-
Confidence 467899999998 8999999999999998 7999999765544333322211 11233333343 3455666666
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
|+|||+...
T Consensus 196 -DiVInaTp~ 204 (283)
T 3jyo_A 196 -DGVVNATPM 204 (283)
T ss_dssp -SEEEECSST
T ss_pred -CEEEECCCC
Confidence 999998764
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00047 Score=65.21 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---HHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS---LLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~v~~~~~~~~ 154 (424)
.+++|+|+||+|.||..+++.+...|++|++++++.++.+. . ..+. .-.+ .|..+.+ .+.+...+.+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~----~--~~~g--a~~~--~~~~~~~~~~~~~~~~~~~g 217 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKI----A--KEYG--AEYL--INASKEDILRQVLKFTNGKG 217 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHH----H--HHTT--CSEE--EETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----H--HHcC--CcEE--EeCCCchHHHHHHHHhCCCC
Confidence 57889999999999999999999999999999985432221 1 1111 1122 3444433 3444444446
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+||+++|.
T Consensus 218 ~D~vid~~g~ 227 (334)
T 3qwb_A 218 VDASFDSVGK 227 (334)
T ss_dssp EEEEEECCGG
T ss_pred ceEEEECCCh
Confidence 8999999984
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00045 Score=65.53 Aligned_cols=77 Identities=14% Similarity=0.151 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---HHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS---LLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~v~~~~~~~~ 154 (424)
.|++|+|+||+|.||..+++.+...|++|++++++.++.+.... +.. -.+ .|..+.+ .+.+...+.+
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~------lga--~~~--~~~~~~~~~~~~~~~~~~~g 213 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR------LGA--AYV--IDTSTAPLYETVMELTNGIG 213 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH------HTC--SEE--EETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh------CCC--cEE--EeCCcccHHHHHHHHhCCCC
Confidence 57899999999999999999999999999999997764433211 111 122 2454433 3444444446
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+||+|+|.
T Consensus 214 ~Dvvid~~g~ 223 (340)
T 3gms_A 214 ADAAIDSIGG 223 (340)
T ss_dssp EEEEEESSCH
T ss_pred CcEEEECCCC
Confidence 7999999984
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00045 Score=65.78 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=52.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH---HHHHhhcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL---LDKIFNVV 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---v~~~~~~~ 153 (424)
.+++|+|+||+|.||..+++.+... |++|++++++.++.+.. + ... .. .+ .|..+.+. +.+....-
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~----~--~~g-~~-~~--~~~~~~~~~~~~~~~~~~~ 239 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA----K--RAG-AD-YV--INASMQDPLAEIRRITESK 239 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH----H--HHT-CS-EE--EETTTSCHHHHHHHHTTTS
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----H--HhC-CC-EE--ecCCCccHHHHHHHHhcCC
Confidence 5789999999999999999999999 99999999864332211 1 111 11 12 35555443 44444312
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
++|+||+++|.
T Consensus 240 ~~d~vi~~~g~ 250 (347)
T 1jvb_A 240 GVDAVIDLNNS 250 (347)
T ss_dssp CEEEEEESCCC
T ss_pred CceEEEECCCC
Confidence 57999999984
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0028 Score=60.37 Aligned_cols=176 Identities=11% Similarity=0.050 Sum_probs=100.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-----eEEEEeCCCCchhhhHHHHHhhhhcc--CCeEEEEccCCCHHHHHHHh
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-----GVLGLDNFNNYYETSLKKARKGLLER--AGVFVIDADINDKSLLDKIF 150 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-----~V~~~~r~~~~~~~~~~~~~~~~~~~--~~v~~~~~Dl~d~~~v~~~~ 150 (424)
+.++|.|+||+|.||.+++-.|+..+. .|.+.+.+.+...........+.... +-..-+. +.+ .-.+.+
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~--i~~--~~y~~~ 106 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVS--IGI--DPYEVF 106 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEE--EES--CHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcE--Eec--CCHHHh
Confidence 457899999999999999999999863 27666554433222222222221111 1111121 111 235677
Q ss_pred hccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCC---cccCCCCCCCCCCCCCCCC
Q 042406 151 NVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS-DPQPAIVWASSS---SVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 151 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~~v~~SS~---~vyg~~~~~~~~e~~~~~~ 226 (424)
++. |+||-.||... ..-....+.+..|..-...+.+++.+. .....++.+|.. ..|-.. .. ....+
T Consensus 107 ~da--DvVVitag~pr--kpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia~-----k~-sg~~~ 176 (375)
T 7mdh_A 107 EDV--DWALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICL-----KN-APDIP 176 (375)
T ss_dssp TTC--SEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH-----HT-CTTSC
T ss_pred CCC--CEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHH-----HH-cCCCC
Confidence 777 99999998632 122345789999999999999988875 555477777651 011000 00 00001
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCC
Q 042406 227 PASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGR 267 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~ 267 (424)
+...-+.+-+..-++-..+++..|+....|+-.+|+|..+.
T Consensus 177 ~rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd 217 (375)
T 7mdh_A 177 AKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST 217 (375)
T ss_dssp GGGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST
T ss_pred ccEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCCC
Confidence 11112234444455555666777876666664468887553
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.002 Score=60.46 Aligned_cols=116 Identities=23% Similarity=0.215 Sum_probs=73.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..++|.|+|+ |.+|..++..|+..|. +|+++|++.+............. .....+.+.. .+. +.+++.
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~---~~~----~al~~a- 75 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH---GDY----DDCRDA- 75 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE---CCG----GGTTTC-
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc---CcH----HHhCCC-
Confidence 4578999999 9999999999998874 89999997543222111111111 1111344442 222 346666
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|+||.+++..... .+ .....+..|..-...+++.+.+......++.+|
T Consensus 76 -DvViia~~~~~~~-g~-~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 76 -DLVVICAGANQKP-GE-TRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp -SEEEECCSCCCCT-TT-CSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred -CEEEEcCCCCCCC-CC-CHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 9999999874422 11 224557778888888888888876554555554
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00055 Score=64.47 Aligned_cols=77 Identities=19% Similarity=0.116 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---HHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS---LLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~v~~~~~~~~ 154 (424)
.+++|+|+||+|.||..+++.+...|++|++++++.++.+.. + .+. .-.+ .|..+.+ .+.+...+.+
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~----~--~~G--a~~~--~~~~~~~~~~~~~~~~~~~g 209 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHA----K--ALG--AWET--IDYSHEDVAKRVLELTDGKK 209 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH----H--HHT--CSEE--EETTTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----H--HcC--CCEE--EeCCCccHHHHHHHHhCCCC
Confidence 578899999999999999999999999999999854432211 1 111 1122 3454433 3444444446
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+||+++|.
T Consensus 210 ~Dvvid~~g~ 219 (325)
T 3jyn_A 210 CPVVYDGVGQ 219 (325)
T ss_dssp EEEEEESSCG
T ss_pred ceEEEECCCh
Confidence 7999999985
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00083 Score=64.07 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---HHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS---LLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~v~~~~~~~~ 154 (424)
.+++|+|+||+|.||..+++.+...|++|++++++.++.+.. + .+. .-.+ .|..+.+ .+.+.. ..+
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~----~--~lG--a~~~--~~~~~~~~~~~~~~~~-~~g 235 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEAC----E--RLG--AKRG--INYRSEDFAAVIKAET-GQG 235 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH----H--HHT--CSEE--EETTTSCHHHHHHHHH-SSC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----H--hcC--CCEE--EeCCchHHHHHHHHHh-CCC
Confidence 578899999999999999999999999999999865432211 1 111 1122 3444433 333333 336
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+||+|+|.
T Consensus 236 ~Dvvid~~g~ 245 (353)
T 4dup_A 236 VDIILDMIGA 245 (353)
T ss_dssp EEEEEESCCG
T ss_pred ceEEEECCCH
Confidence 7999999984
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0016 Score=61.87 Aligned_cols=76 Identities=8% Similarity=-0.031 Sum_probs=51.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---HHHHHhhccCc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS---LLDKIFNVVAF 155 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~v~~~~~~~~~ 155 (424)
+++|+|+||+|.||..+++.+...|++|++++++.++.+... .++ .-.+ .|..+.+ .+.+...+.++
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~------~~G--a~~~--~~~~~~~~~~~v~~~~~~~g~ 234 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK------DIG--AAHV--LNEKAPDFEATLREVMKAEQP 234 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH------HHT--CSEE--EETTSTTHHHHHHHHHHHHCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH------HcC--CCEE--EECCcHHHHHHHHHHhcCCCC
Confidence 378999999999999999999999999999998665432221 111 1122 2444433 34444443467
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+||+++|.
T Consensus 235 D~vid~~g~ 243 (349)
T 3pi7_A 235 RIFLDAVTG 243 (349)
T ss_dssp CEEEESSCH
T ss_pred cEEEECCCC
Confidence 999999974
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0035 Score=58.84 Aligned_cols=118 Identities=13% Similarity=0.123 Sum_probs=73.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.|+|.|+|| |.+|..++..|+..|+ +|+++|++.+..+.......... .......+... +|. +++++. |
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t--~d~----~al~~a--D 74 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS--NTY----DDLAGA--D 74 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE--CCG----GGGTTC--S
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC--CCH----HHhCCC--C
Confidence 468999998 9999999999999998 89999998765543222221110 01112222210 222 346666 9
Q ss_pred EEEEcccccCchhhcc----ChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 157 HVMHLAAQAGVRYAMQ----NPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~----~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
+||.++|.... .... ........|..-...+.+.+.+......+|.+|-
T Consensus 75 ~Vi~a~g~p~k-~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 127 (322)
T 1t2d_A 75 VVIVTAGFTKA-PGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127 (322)
T ss_dssp EEEECCSCSSC-TTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred EEEEeCCCCCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999986321 1111 0245577787778888888877765435555543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0015 Score=64.45 Aligned_cols=37 Identities=27% Similarity=0.264 Sum_probs=33.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
..|++|+|+||+|.||..+++.+...|++|++++++.
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~ 255 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSA 255 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3678999999999999999999999999999998744
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00015 Score=59.70 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=48.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+++|+|.|+ |.+|+.+++.|.+.|++|++++|+.++...... .. ++... +.. ++.+++++. |+|
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~-----~~---~~~~~--~~~---~~~~~~~~~--Div 84 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAE-----KY---EYEYV--LIN---DIDSLIKNN--DVI 84 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHH-----HH---TCEEE--ECS---CHHHHHHTC--SEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH-----Hh---CCceE--eec---CHHHHhcCC--CEE
Confidence 789999997 999999999999999999999996543222111 11 12221 222 345566666 999
Q ss_pred EEccccc
Q 042406 159 MHLAAQA 165 (424)
Q Consensus 159 i~~Ag~~ 165 (424)
|.+.+..
T Consensus 85 i~at~~~ 91 (144)
T 3oj0_A 85 ITATSSK 91 (144)
T ss_dssp EECSCCS
T ss_pred EEeCCCC
Confidence 9988753
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00075 Score=64.74 Aligned_cols=75 Identities=15% Similarity=0.091 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.+.+|+|+|+ |.||..+++.+...|++|++++++.++.+.. .. .+ +.. ...|..+.+.+.++.. ++|+
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~----~~-~l---Ga~-~v~~~~~~~~~~~~~~--~~D~ 254 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEA----LK-NF---GAD-SFLVSRDQEQMQAAAG--TLDG 254 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHH----HH-TS---CCS-EEEETTCHHHHHHTTT--CEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HH-hc---CCc-eEEeccCHHHHHHhhC--CCCE
Confidence 6789999996 9999999999999999999999865432211 10 11 121 1246777777776665 4699
Q ss_pred EEEcccc
Q 042406 158 VMHLAAQ 164 (424)
Q Consensus 158 vi~~Ag~ 164 (424)
||+++|.
T Consensus 255 vid~~g~ 261 (366)
T 1yqd_A 255 IIDTVSA 261 (366)
T ss_dssp EEECCSS
T ss_pred EEECCCc
Confidence 9999985
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00036 Score=66.88 Aligned_cols=77 Identities=12% Similarity=0.033 Sum_probs=54.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
..+++|+|+|+ |.+|+.+++.|...|++|++++|+.++.+..... ....+.. +..+.+.+.+.+.+. |
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~--D 232 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETL------FGSRVEL---LYSNSAEIETAVAEA--D 232 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH------HGGGSEE---EECCHHHHHHHHHTC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHh------hCceeEe---eeCCHHHHHHHHcCC--C
Confidence 45689999999 9999999999999999999999965433222111 1112222 223456677777765 9
Q ss_pred EEEEccccc
Q 042406 157 HVMHLAAQA 165 (424)
Q Consensus 157 ~vi~~Ag~~ 165 (424)
+||++++..
T Consensus 233 vVI~~~~~~ 241 (361)
T 1pjc_A 233 LLIGAVLVP 241 (361)
T ss_dssp EEEECCCCT
T ss_pred EEEECCCcC
Confidence 999999863
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00068 Score=64.27 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---HHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS---LLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~v~~~~~~~~ 154 (424)
.+++|+|+|| |.||..+++.+...|++|++++++.++.+. .+ .+ +... ..|..+.+ .+.+... +
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~----~~--~l---Ga~~-~~d~~~~~~~~~~~~~~~--~ 230 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLEL----AK--EL---GADL-VVNPLKEDAAKFMKEKVG--G 230 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHH----HH--HT---TCSE-EECTTTSCHHHHHHHHHS--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HH--HC---CCCE-EecCCCccHHHHHHHHhC--C
Confidence 5789999999 779999999999999999999985432221 11 11 2221 24665432 3333332 5
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+||+++|.
T Consensus 231 ~d~vid~~g~ 240 (339)
T 1rjw_A 231 VHAAVVTAVS 240 (339)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEECCCC
Confidence 6999999974
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0032 Score=57.97 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=70.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCC------------------CchhhhHHHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFN------------------NYYETSLKKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~v~~~ 136 (424)
.+...+|+|.|+ |++|..+++.|+..|. +++++|.+. .+.+.... .....+..-.++.+
T Consensus 33 kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~-~L~~iNP~v~v~~~ 110 (292)
T 3h8v_A 33 KIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEH-TLRNINPDVLFEVH 110 (292)
T ss_dssp GGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHH-HHHHHCTTSEEEEE
T ss_pred HHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHH-HHHhhCCCcEEEEe
Confidence 456778999997 9999999999999995 788888765 11111111 11122334467777
Q ss_pred EccCCCHHHHHHHhhc---------cCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 137 DADINDKSLLDKIFNV---------VAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~---------~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
..++++.+.+.++++. .++|+||++... ...-..+-++|.+.+. -+|+.+.
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn-----------------~~~R~~in~~c~~~~~--Pli~~gv 170 (292)
T 3h8v_A 111 NYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDN-----------------FEARMTINTACNELGQ--TWMESGV 170 (292)
T ss_dssp CCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSS-----------------HHHHHHHHHHHHHHTC--CEEEEEE
T ss_pred cccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcc-----------------hhhhhHHHHHHHHhCC--CEEEeee
Confidence 7888877777776631 256999987532 1112345567777775 3666543
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0013 Score=61.00 Aligned_cols=77 Identities=10% Similarity=0.041 Sum_probs=53.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.+.+|+++|+|+ |++|+.++..|++.|. +|++++|+.++.+..... ... ... ++.+.+.+.+.+.+.
T Consensus 138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~-----~~~-~~~----~~~~~~~~~~~~~~a- 205 (297)
T 2egg_A 138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVRE-----GDE-RRS----AYFSLAEAETRLAEY- 205 (297)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHH-----SCS-SSC----CEECHHHHHHTGGGC-
T ss_pred CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH-----hhh-ccC----ceeeHHHHHhhhccC-
Confidence 457899999998 8899999999999997 999999965432221111 111 000 122335666777766
Q ss_pred ccEEEEccccc
Q 042406 155 FTHVMHLAAQA 165 (424)
Q Consensus 155 ~d~vi~~Ag~~ 165 (424)
|+|||+.+..
T Consensus 206 -DivIn~t~~~ 215 (297)
T 2egg_A 206 -DIIINTTSVG 215 (297)
T ss_dssp -SEEEECSCTT
T ss_pred -CEEEECCCCC
Confidence 9999998764
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0011 Score=61.41 Aligned_cols=92 Identities=20% Similarity=0.161 Sum_probs=58.5
Q ss_pred CCCCe-EEEEcCC------------------ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhH---HH--HH---hhhhc
Q 042406 77 TRGLT-VLVTGAA------------------GFVGSHVSLALKKRGDGVLGLDNFNNYYETSL---KK--AR---KGLLE 129 (424)
Q Consensus 77 ~~~~~-vlItGg~------------------G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~--~~---~~~~~ 129 (424)
+.|++ ||||+|. |-.|.++|+.++++|+.|+++.+..+-....+ .. .. .....
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~~~ 113 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPA 113 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTSCCTTGGGSCHHHHHHHCEECCC-
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCCcCcchhccCccchhhhhcccccc
Confidence 46777 8998664 66999999999999999999998543111000 00 00 00001
Q ss_pred cCCeEEEEccCCCHHHHHHHhhc-----------------------------------cCccEEEEcccccCch
Q 042406 130 RAGVFVIDADINDKSLLDKIFNV-----------------------------------VAFTHVMHLAAQAGVR 168 (424)
Q Consensus 130 ~~~v~~~~~Dl~d~~~v~~~~~~-----------------------------------~~~d~vi~~Ag~~~~~ 168 (424)
..++..+.+|+...+.+.+++.. .+.|++|++|++.+..
T Consensus 114 ~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVsDf~ 187 (313)
T 1p9o_A 114 LSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFY 187 (313)
T ss_dssp CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCCSEE
T ss_pred ccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchhhcc
Confidence 24566777787776655554421 1359999999997654
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0038 Score=58.53 Aligned_cols=115 Identities=14% Similarity=0.102 Sum_probs=72.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|+|.|+|+ |.+|..++..|++.|+ +|+++|++.+..+.................+.. +|.+ .+++. |+
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~d~~----~~~~a--Dv 70 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA---GDYA----DLKGS--DV 70 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE---CCGG----GGTTC--SE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe---CCHH----HhCCC--CE
Confidence 57999998 9999999999999998 999999975433322111111100011222222 2332 35655 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
||-+++..... .....+....|......+++.+.+......+|.+|.
T Consensus 71 Viiav~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tN 117 (319)
T 1a5z_A 71 VIVAAGVPQKP--GETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117 (319)
T ss_dssp EEECCCCCCCS--SCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEEccCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 99998763311 122356777888888888888877654435555543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00051 Score=68.00 Aligned_cols=73 Identities=12% Similarity=0.263 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d 156 (424)
+.|+|+|.|+ |-+|++|++.|.++|++|++++++.+.... .. ..-++.++.+|-++++.++++ +++. |
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~----~~----~~~~~~~i~Gd~~~~~~L~~Agi~~a--d 70 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRE----LQ----DKYDLRVVNGHASHPDVLHEAGAQDA--D 70 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHH----HH----HHSSCEEEESCTTCHHHHHHHTTTTC--S
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHH----HH----HhcCcEEEEEcCCCHHHHHhcCCCcC--C
Confidence 4689999998 999999999999999999999986432211 11 123688999999999999887 4444 9
Q ss_pred EEEEc
Q 042406 157 HVMHL 161 (424)
Q Consensus 157 ~vi~~ 161 (424)
++|-+
T Consensus 71 ~~ia~ 75 (461)
T 4g65_A 71 MLVAV 75 (461)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 88854
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0016 Score=60.83 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=73.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC--CCeEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKR--GDGVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+|.|+|+ |.+|..++..|++. |++|+++|++.+..+.......... .......+.. .+|.+ + +++. |
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~--t~d~~---~-l~~a--D 71 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG--SNDYA---D-TANS--D 71 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE--ESCGG---G-GTTC--S
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE--CCCHH---H-HCCC--C
Confidence 58999998 99999999999985 7999999998765443211111110 0011212211 12332 2 5555 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
+||-+++.... ........+..|..-...+++.+.+......+|.+|.
T Consensus 72 vViiav~~p~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN 119 (310)
T 1guz_A 72 IVIITAGLPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (310)
T ss_dssp EEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred EEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 99999975321 1122456788899988899998888765546666643
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00097 Score=64.19 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=55.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
...+++|+|+|+ |.||..+++.+...|++|++.+|+.++.+.. . +.. ...+ ..+..+.+.+.+.+.+.
T Consensus 165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~----~-~~~-g~~~---~~~~~~~~~l~~~l~~a-- 232 (377)
T 2vhw_A 165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQL----D-AEF-CGRI---HTRYSSAYELEGAVKRA-- 232 (377)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----H-HHT-TTSS---EEEECCHHHHHHHHHHC--
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH----H-Hhc-CCee---EeccCCHHHHHHHHcCC--
Confidence 467899999998 9999999999999999999999964322111 1 101 1111 23445667788888877
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+||++++.
T Consensus 233 DvVi~~~~~ 241 (377)
T 2vhw_A 233 DLVIGAVLV 241 (377)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999998875
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.001 Score=62.90 Aligned_cols=70 Identities=16% Similarity=0.051 Sum_probs=56.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCccE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFTH 157 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d~ 157 (424)
.++++|.|+ |.+|+.+++.|.++|+ |++++++.+..+ ....++.++.+|.+|++.++++ +++. |.
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~----------~~~~~~~~i~gd~~~~~~L~~a~i~~a--~~ 180 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK----------VLRSGANFVHGDPTRVSDLEKANVRGA--RA 180 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH----------HHHTTCEEEESCTTSHHHHHHTCSTTE--EE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh----------HHhCCcEEEEeCCCCHHHHHhcChhhc--cE
Confidence 568999997 9999999999999999 999988554221 1125789999999999999887 6655 98
Q ss_pred EEEcc
Q 042406 158 VMHLA 162 (424)
Q Consensus 158 vi~~A 162 (424)
|+-+.
T Consensus 181 vi~~~ 185 (336)
T 1lnq_A 181 VIVDL 185 (336)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 88765
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0053 Score=57.78 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=72.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhh--hh-ccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKG--LL-ERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~-~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
|+|.|+|| |.+|..++..|+..|+ +|+++|++.+..+......... .. ...++... .| . +++++.
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d---~----~al~~a-- 83 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-NN---Y----EYLQNS-- 83 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SC---G----GGGTTC--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-CC---H----HHHCCC--
Confidence 68999998 9999999999999998 9999999876555322111111 11 11223221 23 2 346666
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+||-++|... .... ...+....|..-...+++.+.+......++.+|-
T Consensus 84 D~VI~avg~p~-k~g~-tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 84 DVVIITAGVPR-KPNM-TRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp SEEEECCSCCC-CTTC-CSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CEEEEcCCCCC-CCCC-chhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999998632 1111 1234567788778888888777655435555543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0014 Score=62.74 Aligned_cols=100 Identities=20% Similarity=0.130 Sum_probs=62.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---HHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS---LLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~v~~~~~~~~ 154 (424)
.+++|+|+||+|.||..+++.+...|++|++++++.++.+. .+ + +. .-.++ |..+.+ .+.+.. ..+
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~----~~-~-~G--a~~~~--~~~~~~~~~~~~~~~-~~g 231 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAF----LK-S-LG--CDRPI--NYKTEPVGTVLKQEY-PEG 231 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHH----HH-H-TT--CSEEE--ETTTSCHHHHHHHHC-TTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHH----HH-H-cC--CcEEE--ecCChhHHHHHHHhc-CCC
Confidence 57899999999999999999999999999999985432211 11 1 11 11222 444322 222222 225
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSV 209 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~v 209 (424)
+|+||+++|.. .....++.++..| ++|.+++...
T Consensus 232 ~D~vid~~g~~------------------~~~~~~~~l~~~G---~iv~~g~~~~ 265 (362)
T 2c0c_A 232 VDVVYESVGGA------------------MFDLAVDALATKG---RLIVIGFISG 265 (362)
T ss_dssp EEEEEECSCTH------------------HHHHHHHHEEEEE---EEEECCCGGG
T ss_pred CCEEEECCCHH------------------HHHHHHHHHhcCC---EEEEEeCCCC
Confidence 79999998730 1233455555543 7888887543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0069 Score=56.68 Aligned_cols=116 Identities=18% Similarity=0.159 Sum_probs=70.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
..|+|.|.|+ |.+|..++..|++.|+ +|++++|+.+..+.................+... .+.+ .+++.
T Consensus 6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~----~~~~a-- 76 (319)
T 1lld_A 6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDPE----ICRDA-- 76 (319)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCGG----GGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeC--CCHH----HhCCC--
Confidence 3478999998 9999999999999998 9999999653332111111111101112222221 1322 34545
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWA 204 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~ 204 (424)
|+||-+++..... ..+....+..|......+++.+.+......+|.+
T Consensus 77 D~Vii~v~~~~~~--g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~ 123 (319)
T 1lld_A 77 DMVVITAGPRQKP--GQSRLELVGATVNILKAIMPNLVKVAPNAIYMLI 123 (319)
T ss_dssp SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred CEEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe
Confidence 9999998753321 2334567788888888888887776544244433
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0053 Score=55.45 Aligned_cols=111 Identities=16% Similarity=0.161 Sum_probs=68.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCc-------------------hhhhHHHHHhhhhccCCeEEE
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNY-------------------YETSLKKARKGLLERAGVFVI 136 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~v~~~ 136 (424)
+.+++|+|.|+ |++|.++++.|+..|. +++++|++.-. .+..... -......-.++.+
T Consensus 26 l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~-l~~~np~~~v~~~ 103 (251)
T 1zud_1 26 LLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQR-LTQLNPDIQLTAL 103 (251)
T ss_dssp HHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHH-HHHHCTTSEEEEE
T ss_pred HhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHH-HHHHCCCCEEEEE
Confidence 45678999998 7899999999999996 78888765311 1111111 1111122334555
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYG 211 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg 211 (424)
..+++ .+.+.+++++. |+||++... . ..-..+.++|.+.+. .+|..+..+.+|
T Consensus 104 ~~~~~-~~~~~~~~~~~--DvVi~~~d~---------~--------~~r~~l~~~~~~~~~--p~i~~~~~g~~G 156 (251)
T 1zud_1 104 QQRLT-GEALKDAVARA--DVVLDCTDN---------M--------ATRQEINAACVALNT--PLITASAVGFGG 156 (251)
T ss_dssp CSCCC-HHHHHHHHHHC--SEEEECCSS---------H--------HHHHHHHHHHHHTTC--CEEEEEEEBTEE
T ss_pred eccCC-HHHHHHHHhcC--CEEEECCCC---------H--------HHHHHHHHHHHHhCC--CEEEEeccccce
Confidence 54554 45677888876 999987531 1 112345566777664 477776655544
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0012 Score=62.74 Aligned_cols=76 Identities=24% Similarity=0.224 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-HHHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-KSLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~v~~~~~~~~~d 156 (424)
.+++|||+||+|.||..+++.+...|++|+++ ++.++. ...+ .+ +...+. +-.+ .+.+.+...+.++|
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~----~~~~--~l---Ga~~i~-~~~~~~~~~~~~~~~~g~D 218 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDL----EYVR--DL---GATPID-ASREPEDYAAEHTAGQGFD 218 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHH----HHHH--HH---TSEEEE-TTSCHHHHHHHHHTTSCEE
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHH----HHHH--Hc---CCCEec-cCCCHHHHHHHHhcCCCce
Confidence 57889999999999999999999999999988 433211 1111 11 233332 2222 23344444444689
Q ss_pred EEEEcccc
Q 042406 157 HVMHLAAQ 164 (424)
Q Consensus 157 ~vi~~Ag~ 164 (424)
+||+++|.
T Consensus 219 ~vid~~g~ 226 (343)
T 3gaz_A 219 LVYDTLGG 226 (343)
T ss_dssp EEEESSCT
T ss_pred EEEECCCc
Confidence 99999973
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0012 Score=62.90 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---HHHHHhhcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS---LLDKIFNVV 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~v~~~~~~~ 153 (424)
.|.+|+|+|+ |.||..+++.+...|+ +|++++++.++.+. .+ .+.. -.+ .|..+.+ .+.++..+.
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~----~~--~~Ga--~~~--~~~~~~~~~~~v~~~~~g~ 235 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRREL----AK--KVGA--DYV--INPFEEDVVKEVMDITDGN 235 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHH----HH--HHTC--SEE--ECTTTSCHHHHHHHHTTTS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH----HH--HhCC--CEE--ECCCCcCHHHHHHHHcCCC
Confidence 5778999999 9999999999999999 99999985432211 11 1111 112 3554433 333333333
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
++|+||+++|.
T Consensus 236 g~D~vid~~g~ 246 (348)
T 2d8a_A 236 GVDVFLEFSGA 246 (348)
T ss_dssp CEEEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 57999999874
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00037 Score=70.16 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=30.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY 115 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 115 (424)
.+++|+++|||| |++|+.++..|++.|++|++++|+.++
T Consensus 361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~ 399 (523)
T 2o7s_A 361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYER 399 (523)
T ss_dssp -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHH
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 356889999999 799999999999999999999996543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0008 Score=62.64 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-HHHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-KSLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~v~~~~~~~~~d 156 (424)
.|++|+|+||+|.+|..+++.+...|++|++++++.++.+.. +. + +... ..|..+ .+..++ +. ++|
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~----~~--~---ga~~-~~~~~~~~~~~~~-~~--~~d 191 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP----LA--L---GAEE-AATYAEVPERAKA-WG--GLD 191 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH----HH--T---TCSE-EEEGGGHHHHHHH-TT--SEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----Hh--c---CCCE-EEECCcchhHHHH-hc--Cce
Confidence 467899999999999999999999999999999965543221 11 1 1111 135555 333333 34 459
Q ss_pred EEEEcccc
Q 042406 157 HVMHLAAQ 164 (424)
Q Consensus 157 ~vi~~Ag~ 164 (424)
+||+ +|.
T Consensus 192 ~vid-~g~ 198 (302)
T 1iz0_A 192 LVLE-VRG 198 (302)
T ss_dssp EEEE-CSC
T ss_pred EEEE-CCH
Confidence 9999 874
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0075 Score=56.46 Aligned_cols=115 Identities=14% Similarity=0.134 Sum_probs=70.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhh--hh-ccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKG--LL-ERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~-~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.|+|.|+|+ |.+|..++..|++.|+ +|+++|++.+..+......... .. ...++... . |. +.+++.
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~---d~----~a~~~a- 73 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT-D---DY----ADISGS- 73 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-S---CG----GGGTTC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC-C---CH----HHhCCC-
Confidence 478999998 9999999999999998 9999999876544321111110 00 01122211 2 22 245655
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+||-+++..... .....+....|......+++.+.+......+|.+|.
T Consensus 74 -DiVi~avg~p~~~--g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 74 -DVVIITASIPGRP--KDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp -SEEEECCCCSSCC--SSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred -CEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 9999999863321 112234456677777777777776654435665554
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0022 Score=58.79 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=49.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
..++|+++|+|+ |++|+.++..|++.|++|++++|+.++.+........ ...+.. .|+ +++ .+ .+.
T Consensus 116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~----~~~~~~--~~~---~~~---~~-~~~ 181 (272)
T 1p77_A 116 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQP----YGNIQA--VSM---DSI---PL-QTY 181 (272)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGG----GSCEEE--EEG---GGC---CC-SCC
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccc----cCCeEE--eeH---HHh---cc-CCC
Confidence 457899999998 8899999999999999999999975543332222111 112222 233 111 12 145
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+|||+++..
T Consensus 182 DivIn~t~~~ 191 (272)
T 1p77_A 182 DLVINATSAG 191 (272)
T ss_dssp SEEEECCCC-
T ss_pred CEEEECCCCC
Confidence 9999999864
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00098 Score=63.90 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=50.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC---CchhhhHHHHHhhhhccCCeEEEEccCCC--HHHHHHHh
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN---NYYETSLKKARKGLLERAGVFVIDADIND--KSLLDKIF 150 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~---~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~v~~~~ 150 (424)
..++++|+|+|| |.||..+++.+...|++|++++++. ++.+. .+ .+ +...+ | .+ .+.+.+ .
T Consensus 178 ~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~~--~~---ga~~v--~-~~~~~~~~~~-~ 243 (366)
T 2cdc_A 178 TLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTV----IE--ET---KTNYY--N-SSNGYDKLKD-S 243 (366)
T ss_dssp SSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHH----HH--HH---TCEEE--E-CTTCSHHHHH-H
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHH----HH--Hh---CCcee--c-hHHHHHHHHH-h
Confidence 356899999999 9999999999999999999999865 32211 11 11 23333 5 44 223433 2
Q ss_pred hccCccEEEEcccc
Q 042406 151 NVVAFTHVMHLAAQ 164 (424)
Q Consensus 151 ~~~~~d~vi~~Ag~ 164 (424)
. .++|+||+++|.
T Consensus 244 ~-~~~d~vid~~g~ 256 (366)
T 2cdc_A 244 V-GKFDVIIDATGA 256 (366)
T ss_dssp H-CCEEEEEECCCC
T ss_pred C-CCCCEEEECCCC
Confidence 2 357999999985
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0022 Score=61.60 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.|.+|+|+||+|.||..+++.+...|++|++.++ +++. ...+ .+ +... ..|..+.+..+++.+..++|+
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~~~----~~~~--~l---Ga~~-v~~~~~~~~~~~~~~~~g~D~ 251 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QDAS----ELVR--KL---GADD-VIDYKSGSVEEQLKSLKPFDF 251 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GGGH----HHHH--HT---TCSE-EEETTSSCHHHHHHTSCCBSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hHHH----HHHH--Hc---CCCE-EEECCchHHHHHHhhcCCCCE
Confidence 5789999999999999999999999999998884 2211 1111 11 1211 135555444444443336799
Q ss_pred EEEcccc
Q 042406 158 VMHLAAQ 164 (424)
Q Consensus 158 vi~~Ag~ 164 (424)
||+++|.
T Consensus 252 vid~~g~ 258 (375)
T 2vn8_A 252 ILDNVGG 258 (375)
T ss_dssp EEESSCT
T ss_pred EEECCCC
Confidence 9999984
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0074 Score=56.30 Aligned_cols=116 Identities=14% Similarity=0.053 Sum_probs=69.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+|.|.| +|.+|..++..|++.| ++|++++|+.+..+......... ......+..... |. +.+++. |
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---d~----~~~~~a--D 71 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN---DW----AALADA--D 71 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEES---CG----GGGTTC--S
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeC---CH----HHhCCC--C
Confidence 6899999 5999999999999999 79999999754433322111100 011122333322 32 245555 9
Q ss_pred EEEEcccccCch--hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 157 HVMHLAAQAGVR--YAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 157 ~vi~~Ag~~~~~--~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
+||-+++..... ............|..-...+++.+.+......+|.+|
T Consensus 72 vViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 999998753210 0011123456678877888888887765543555544
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0019 Score=63.80 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
..|.+|+|+||+|.||...++.+...|++|++++++.
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~ 263 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSP 263 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCH
Confidence 3578899999999999999999999999999998744
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0029 Score=60.01 Aligned_cols=76 Identities=20% Similarity=0.190 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC--HHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND--KSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~v~~~~~~~~~ 155 (424)
.+.+|+|+||+|.||...++.+...|++|++++++.++.+.. + .++ .-.++ |..+ .+.+.+. ...++
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~----~--~lG--a~~vi--~~~~~~~~~~~~~-~~~g~ 218 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWT----K--KMG--ADIVL--NHKESLLNQFKTQ-GIELV 218 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHH----H--HHT--CSEEE--CTTSCHHHHHHHH-TCCCE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH----H--hcC--CcEEE--ECCccHHHHHHHh-CCCCc
Confidence 578899999999999999999999999999999854322111 1 111 11222 3332 2334443 33367
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+||+++|.
T Consensus 219 Dvv~d~~g~ 227 (346)
T 3fbg_A 219 DYVFCTFNT 227 (346)
T ss_dssp EEEEESSCH
T ss_pred cEEEECCCc
Confidence 999999874
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00091 Score=61.34 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=50.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..++|+++|+|+ |++|+.++..|++.|. +|++++|+.++.... . ..+.. ...+++.+++.+.
T Consensus 114 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l---------a-~~~~~-----~~~~~~~~~~~~a- 176 (277)
T 3don_A 114 GIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNW---------S-LNINK-----INLSHAESHLDEF- 176 (277)
T ss_dssp TGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC---------C-SCCEE-----ECHHHHHHTGGGC-
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH---------H-Hhccc-----ccHhhHHHHhcCC-
Confidence 357899999997 8999999999999998 899999965432221 1 11221 1345566667766
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
|+|||+...
T Consensus 177 -DiVInaTp~ 185 (277)
T 3don_A 177 -DIIINTTPA 185 (277)
T ss_dssp -SEEEECCC-
T ss_pred -CEEEECccC
Confidence 999998654
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.013 Score=54.67 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=76.0
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|.|+|| |.+|..++..|+..|. +|+++|++.+..+.......... .....+.+... .|. +.+++. |+|
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~----~a~~~a--D~V 71 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS--NSY----EDMRGS--DIV 71 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE--SCG----GGGTTC--SEE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC--CCH----HHhCCC--CEE
Confidence 4899998 9999999999998887 79999998765543222221110 11123233321 232 256766 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|..+|..... -......+..|..-...+++.+.+......+|.+|-
T Consensus 72 i~~ag~~~k~--G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 72 LVTAGIGRKP--GMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp EECCSCCCCS--SCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEeCCCCCCC--CCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 9999874321 223457788899989999999888765546776654
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.013 Score=55.70 Aligned_cols=76 Identities=22% Similarity=0.150 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC----HHHHHHHhh--
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND----KSLLDKIFN-- 151 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~v~~~~~-- 151 (424)
.+.+|||+|+ |.+|...++.+...|++|++++++.++.+. .+ .+... .++ |..+ .+.+.+...
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~----~~--~lGa~--~~~--~~~~~~~~~~~i~~~~~~~ 236 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEV----AK--NCGAD--VTL--VVDPAKEEESSIIERIRSA 236 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HH--HTTCS--EEE--ECCTTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHH----HH--HhCCC--EEE--cCcccccHHHHHHHHhccc
Confidence 5778999997 999999999998999999999885432211 11 11111 222 4332 345555554
Q ss_pred -ccCccEEEEcccc
Q 042406 152 -VVAFTHVMHLAAQ 164 (424)
Q Consensus 152 -~~~~d~vi~~Ag~ 164 (424)
+.++|+||+++|.
T Consensus 237 ~g~g~D~vid~~g~ 250 (352)
T 1e3j_A 237 IGDLPNVTIDCSGN 250 (352)
T ss_dssp SSSCCSEEEECSCC
T ss_pred cCCCCCEEEECCCC
Confidence 3357999999874
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.024 Score=54.01 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHH----Hhhc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDK----IFNV 152 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~----~~~~ 152 (424)
.|.+|||+|+ |.+|...++.+...|++ |++++++.++.+. . ..+ ...+..+..|-.+.+.+.+ ...+
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~-----a-~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g 250 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKF-----A-KEI-CPEVVTHKVERLSAEESAKKIVESFGG 250 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHH-----H-HHH-CTTCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH-----H-HHh-chhcccccccccchHHHHHHHHHHhCC
Confidence 5678999998 99999999999999997 8888875432221 1 112 2344444555444444333 3333
Q ss_pred cCccEEEEcccc
Q 042406 153 VAFTHVMHLAAQ 164 (424)
Q Consensus 153 ~~~d~vi~~Ag~ 164 (424)
.++|+||+++|.
T Consensus 251 ~g~Dvvid~~g~ 262 (363)
T 3m6i_A 251 IEPAVALECTGV 262 (363)
T ss_dssp CCCSEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 368999999874
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.022 Score=52.84 Aligned_cols=112 Identities=18% Similarity=0.137 Sum_probs=73.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
++++|.|+|| |.+|..++..|+.+|. +|+++|++.+.......... ....++... . |. +.+++.
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~---~~~~~i~~t-~---d~----~~l~~a-- 78 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEI---FNLPNVEIS-K---DL----SASAHS-- 78 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHH---HTCTTEEEE-S---CG----GGGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhh---hcCCCeEEe-C---CH----HHHCCC--
Confidence 4578999997 9999999999999998 99999997652112221111 222344442 3 32 346666
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
|+||-.+|.. .. -......+..|..-...+++.+.+......++.+|-
T Consensus 79 D~Vi~aag~~--~p-G~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 79 KVVIFTVNSL--GS-SQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp SEEEECCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred CEEEEcCCCC--CC-CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 9999999873 22 234456788888888889998888765546666664
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0038 Score=54.97 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=45.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.+|+|.|+| +|.+|+.+++.|++.|++|++++|+.+..+ .....++... +..+++++. |+
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~---------~~~~~g~~~~--------~~~~~~~~~--Dv 86 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTA---------RLFPSAAQVT--------FQEEAVSSP--EV 86 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHH---------HHSBTTSEEE--------EHHHHTTSC--SE
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHH---------HHHHcCCcee--------cHHHHHhCC--CE
Confidence 457899999 699999999999999999999998543211 1111244332 244566655 99
Q ss_pred EEEccc
Q 042406 158 VMHLAA 163 (424)
Q Consensus 158 vi~~Ag 163 (424)
||.+..
T Consensus 87 Vi~av~ 92 (215)
T 2vns_A 87 IFVAVF 92 (215)
T ss_dssp EEECSC
T ss_pred EEECCC
Confidence 998865
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0075 Score=57.61 Aligned_cols=78 Identities=18% Similarity=0.102 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-HHHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-KSLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~v~~~~~~~~~d 156 (424)
.|.+|||+| +|.+|...++.+...|++|++++++.++.+.. ..++. -.++.-+-.+ .+.+.+...+.++|
T Consensus 189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~------~~lGa--~~vi~~~~~~~~~~v~~~~~g~g~D 259 (363)
T 3uog_A 189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRA------FALGA--DHGINRLEEDWVERVYALTGDRGAD 259 (363)
T ss_dssp TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH------HHHTC--SEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHH------HHcCC--CEEEcCCcccHHHHHHHHhCCCCce
Confidence 578899999 89999999999999999999999854322211 11111 1233211112 23455555554689
Q ss_pred EEEEcccc
Q 042406 157 HVMHLAAQ 164 (424)
Q Consensus 157 ~vi~~Ag~ 164 (424)
+||+++|.
T Consensus 260 ~vid~~g~ 267 (363)
T 3uog_A 260 HILEIAGG 267 (363)
T ss_dssp EEEEETTS
T ss_pred EEEECCCh
Confidence 99999983
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0072 Score=58.98 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=55.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.+++|+|.|+ |.+|+.+++.+.+.|++|++++.+.+.... . -.-.++..|..|.+.+.++++++
T Consensus 32 ~~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~-----~------~ad~~~~~~~~d~~~l~~~a~~~-- 97 (419)
T 4e4t_A 32 ILPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPASPAG-----A------VADRHLRAAYDDEAALAELAGLC-- 97 (419)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTTCHHH-----H------HSSEEECCCTTCHHHHHHHHHHC--
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCcCchh-----h------hCCEEEECCcCCHHHHHHHHhcC--
Confidence 467899999997 899999999999999999999875432111 0 01145668999999999999765
Q ss_pred cEEEE
Q 042406 156 THVMH 160 (424)
Q Consensus 156 d~vi~ 160 (424)
|+|+.
T Consensus 98 D~V~~ 102 (419)
T 4e4t_A 98 EAVST 102 (419)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99884
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0065 Score=58.40 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=55.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+.+|+|+|.|+ |.+|+.+++.+.+.|++|++++.+.+.... .-.-.++..|..|.+.+.++++++ |
T Consensus 10 ~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~-----------~~ad~~~~~~~~d~~~l~~~~~~~--d 75 (377)
T 3orq_A 10 KFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCR-----------YVAHEFIQAKYDDEKALNQLGQKC--D 75 (377)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTG-----------GGSSEEEECCTTCHHHHHHHHHHC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhh-----------hhCCEEEECCCCCHHHHHHHHHhC--C
Confidence 56899999997 899999999999999999999975432111 012246779999999999999876 8
Q ss_pred EEEE
Q 042406 157 HVMH 160 (424)
Q Consensus 157 ~vi~ 160 (424)
+|..
T Consensus 76 vi~~ 79 (377)
T 3orq_A 76 VITY 79 (377)
T ss_dssp EEEE
T ss_pred ccee
Confidence 8754
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0082 Score=53.76 Aligned_cols=83 Identities=16% Similarity=0.273 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEE-EeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh-ccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLG-LDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN-VVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~-~~~~ 155 (424)
++|+|.|+|+ |.+|+.+++.+.+++++++. ++|+.+...........+... +..+ ..|.+.++.+.+.++ +.+.
T Consensus 2 ~MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l~--~~DV-vIDft~p~a~~~~~~l~~g~ 77 (243)
T 3qy9_A 2 ASMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADVK--GADV-AIDFSNPNLLFPLLDEDFHL 77 (243)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTCT--TCSE-EEECSCHHHHHHHHTSCCCC
T ss_pred CceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHHh--CCCE-EEEeCChHHHHHHHHHhcCC
Confidence 3689999999 99999999999999777665 466433100000000000000 2232 358888888777664 2256
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
.+|+.+.|.
T Consensus 78 ~vVigTTG~ 86 (243)
T 3qy9_A 78 PLVVATTGE 86 (243)
T ss_dssp CEEECCCSS
T ss_pred ceEeCCCCC
Confidence 777766653
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0064 Score=55.81 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=49.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
...+++++|+|+ |++|+.++..|++.|. +|++++|+.++.+........ ...+..+. +.+ + .. +
T Consensus 123 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~----~~~~~~~~--~~~---l---~~--~ 187 (281)
T 3o8q_A 123 LLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAA----YGEVKAQA--FEQ---L---KQ--S 187 (281)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGG----GSCEEEEE--GGG---C---CS--C
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhc----cCCeeEee--HHH---h---cC--C
Confidence 467899999998 8999999999999996 999999975543332222211 11334332 221 1 13 4
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
.|+|||+...
T Consensus 188 aDiIInaTp~ 197 (281)
T 3o8q_A 188 YDVIINSTSA 197 (281)
T ss_dssp EEEEEECSCC
T ss_pred CCEEEEcCcC
Confidence 5999998765
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.022 Score=53.39 Aligned_cols=37 Identities=35% Similarity=0.340 Sum_probs=31.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFN 113 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~ 113 (424)
.+.+++|+|.|+ |++|..+++.|+..|. +++++|+..
T Consensus 31 kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~ 68 (340)
T 3rui_A 31 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT 68 (340)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred HHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCE
Confidence 356778999998 9999999999999996 788888754
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.013 Score=55.75 Aligned_cols=110 Identities=21% Similarity=0.172 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchh------------------hhHHHHHhhhhccCCeEEE
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYE------------------TSLKKARKGLLERAGVFVI 136 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~------------------~~~~~~~~~~~~~~~v~~~ 136 (424)
.+.+++|+|.|+ |++|..+++.|+..|. +++++|++.-... ......-......-.++.+
T Consensus 115 ~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~ 193 (353)
T 3h5n_A 115 KLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEI 193 (353)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEe
Confidence 356788999998 9999999999999996 7899988642110 0111111122234467778
Q ss_pred EccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC
Q 042406 137 DADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSS 207 (424)
Q Consensus 137 ~~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~ 207 (424)
..++.+...+.+ +++. |+||.+..... + .-..+-++|.+.+. .+|+.+..
T Consensus 194 ~~~i~~~~~~~~-~~~~--DlVvd~~Dn~~--------~--------~r~~ln~~c~~~~~--p~i~~~~~ 243 (353)
T 3h5n_A 194 ALNINDYTDLHK-VPEA--DIWVVSADHPF--------N--------LINWVNKYCVRANQ--PYINAGYV 243 (353)
T ss_dssp ECCCCSGGGGGG-SCCC--SEEEECCCCST--------T--------HHHHHHHHHHHTTC--CEEEEEEE
T ss_pred ecccCchhhhhH-hccC--CEEEEecCChH--------H--------HHHHHHHHHHHhCC--CEEEEEEe
Confidence 888877654555 6655 99999763211 0 11234567788776 46766543
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0025 Score=62.64 Aligned_cols=38 Identities=26% Similarity=0.229 Sum_probs=34.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
.+.||+++|||++ .||+.+++.|++.|++|++.+++..
T Consensus 262 ~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~~ 299 (488)
T 3ond_A 262 MIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDPI 299 (488)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 4789999999984 9999999999999999999998643
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0041 Score=56.64 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=48.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.||+++|+|+++.+|+.++..|+++|+.|+++.+.. ..+.+.+++.
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------------------------~~L~~~~~~A-- 204 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------------------------KDLSLYTRQA-- 204 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHTTC--
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHhhcC--
Confidence 57899999999999999999999999999999997632 1245667766
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+||...|..
T Consensus 205 DIVI~Avg~p 214 (285)
T 3p2o_A 205 DLIIVAAGCV 214 (285)
T ss_dssp SEEEECSSCT
T ss_pred CEEEECCCCC
Confidence 9999988753
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0047 Score=56.42 Aligned_cols=74 Identities=14% Similarity=0.103 Sum_probs=49.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..++|+++|+|+ |++|+.++..|++.|. +|++++|+.++.+...... ....+..+ ++.+. .. . +
T Consensus 117 ~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~-----~~~~~~~~--~~~~l---~~--~--~ 181 (272)
T 3pwz_A 117 PLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNEL-----DHSRLRIS--RYEAL---EG--Q--S 181 (272)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHH-----CCTTEEEE--CSGGG---TT--C--C
T ss_pred CccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh-----ccCCeeEe--eHHHh---cc--c--C
Confidence 467999999998 8999999999999995 9999999654433322211 11223333 22221 11 3 4
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
.|+|||+...
T Consensus 182 ~DivInaTp~ 191 (272)
T 3pwz_A 182 FDIVVNATSA 191 (272)
T ss_dssp CSEEEECSSG
T ss_pred CCEEEECCCC
Confidence 5999998654
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0037 Score=60.73 Aligned_cols=72 Identities=26% Similarity=0.160 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
..+++|+|.|+ |.+|..+++.|...|. +|++++|+.++..... ... +..+ .+ .+.+.+.+.+.
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la-----~~~---g~~~--~~---~~~l~~~l~~a-- 228 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELA-----RDL---GGEA--VR---FDELVDHLARS-- 228 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH-----HHH---TCEE--CC---GGGHHHHHHTC--
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-----HHc---CCce--ec---HHhHHHHhcCC--
Confidence 57899999998 9999999999999998 8999998543221111 111 1222 12 23466666665
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+||++.+.
T Consensus 229 DvVi~at~~ 237 (404)
T 1gpj_A 229 DVVVSATAA 237 (404)
T ss_dssp SEEEECCSS
T ss_pred CEEEEccCC
Confidence 999999764
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0045 Score=58.74 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC-----C-eEEEEeCCCCchhhhHHHHHhhhhcc-CCeEEEEccCCCHHHHHHHh
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRG-----D-GVLGLDNFNNYYETSLKKARKGLLER-AGVFVIDADINDKSLLDKIF 150 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g-----~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~v~~~~ 150 (424)
++++|.|.||||.+|+.|++.|++++ + +|+.+.+..+.... .... ...+.. ..+.+. |+ +.+ .+
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~-~~~~-~~~l~~~~~~~~~--~~-~~~----~~ 78 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGST-LGEH-HPHLTPLAHRVVE--PT-EAA----VL 78 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSB-GGGT-CTTCGGGTTCBCE--EC-CHH----HH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCc-hhhh-cccccccceeeec--cC-CHH----Hh
Confidence 35789999999999999999999988 4 67776532211000 0000 000000 122222 22 222 24
Q ss_pred hccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 042406 151 NVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSS 208 (424)
Q Consensus 151 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~ 208 (424)
.++ |+||.+.+... +..+++.+ +.|. ++|-.|+..
T Consensus 79 ~~~--DvVf~alg~~~------------------s~~~~~~~-~~G~--~vIDlSa~~ 113 (352)
T 2nqt_A 79 GGH--DAVFLALPHGH------------------SAVLAQQL-SPET--LIIDCGADF 113 (352)
T ss_dssp TTC--SEEEECCTTSC------------------CHHHHHHS-CTTS--EEEECSSTT
T ss_pred cCC--CEEEECCCCcc------------------hHHHHHHH-hCCC--EEEEECCCc
Confidence 445 99999987532 24566777 6663 788889864
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.003 Score=61.80 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=61.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-C---eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccC--CCHH-HHHHHhhc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG-D---GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI--NDKS-LLDKIFNV 152 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g-~---~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~-~v~~~~~~ 152 (424)
++|+|.| .|.||+.++..|++++ . +|++++......+. . +. .++.+...++ .|.+ .+.+++++
T Consensus 14 ~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~--~----~~---~g~~~~~~~Vdadnv~~~l~aLl~~ 83 (480)
T 2ph5_A 14 NRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDV--A----QQ---YGVSFKLQQITPQNYLEVIGSTLEE 83 (480)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCH--H----HH---HTCEEEECCCCTTTHHHHTGGGCCT
T ss_pred CCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhH--H----hh---cCCceeEEeccchhHHHHHHHHhcC
Confidence 4699999 5999999999999975 3 68888875433111 1 11 1345555555 4443 35667776
Q ss_pred cCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC
Q 042406 153 VAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSS 207 (424)
Q Consensus 153 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~ 207 (424)
. |+|||++-... ...++++|.++|+ + |++++
T Consensus 84 ~--DvVIN~s~~~~------------------~l~Im~acleaGv--~--YlDTa 114 (480)
T 2ph5_A 84 N--DFLIDVSIGIS------------------SLALIILCNQKGA--L--YINAA 114 (480)
T ss_dssp T--CEEEECCSSSC------------------HHHHHHHHHHHTC--E--EEESS
T ss_pred C--CEEEECCcccc------------------CHHHHHHHHHcCC--C--EEECC
Confidence 3 99998663321 3568999999986 3 44554
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0045 Score=59.04 Aligned_cols=76 Identities=20% Similarity=0.171 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCH--HHHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDK--SLLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~--~~v~~~~~~~~ 154 (424)
.|.+|||+|| |.+|...++.+... |++|++++++.++.+. .+ .++ .-.+ .|..+. +.+.++..+.+
T Consensus 186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~----~~--~lG--a~~v--i~~~~~~~~~v~~~~~g~g 254 (359)
T 1h2b_A 186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKL----AE--RLG--ADHV--VDARRDPVKQVMELTRGRG 254 (359)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHH----HH--HTT--CSEE--EETTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH----HH--HhC--CCEE--EeccchHHHHHHHHhCCCC
Confidence 5778999999 89999999988888 9999999985432211 11 111 1122 355553 34444443336
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+||+++|.
T Consensus 255 ~Dvvid~~G~ 264 (359)
T 1h2b_A 255 VNVAMDFVGS 264 (359)
T ss_dssp EEEEEESSCC
T ss_pred CcEEEECCCC
Confidence 7999999874
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0036 Score=58.88 Aligned_cols=73 Identities=26% Similarity=0.201 Sum_probs=46.6
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH--HHHHHhhccCccEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS--LLDKIFNVVAFTHV 158 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~--~v~~~~~~~~~d~v 158 (424)
+|+|+||+|.+|..+++.+...|++|++++++.++.+.. + .++. -.+ .|..+.+ .+.++ ...++|+|
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~----~--~lGa--~~~--i~~~~~~~~~~~~~-~~~~~d~v 220 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL----R--VLGA--KEV--LAREDVMAERIRPL-DKQRWAAA 220 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH----H--HTTC--SEE--EECC---------C-CSCCEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----H--HcCC--cEE--EecCCcHHHHHHHh-cCCcccEE
Confidence 699999999999999999999999999999976543222 1 1111 122 2444431 22222 22257999
Q ss_pred EEcccc
Q 042406 159 MHLAAQ 164 (424)
Q Consensus 159 i~~Ag~ 164 (424)
|+++|.
T Consensus 221 id~~g~ 226 (328)
T 1xa0_A 221 VDPVGG 226 (328)
T ss_dssp EECSTT
T ss_pred EECCcH
Confidence 999974
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0076 Score=57.97 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCC---CHH---HHHHHh
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN---DKS---LLDKIF 150 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~---d~~---~v~~~~ 150 (424)
.|.+|||+| +|.+|...++.+...| .+|++++++.++.+. .+ .++ .-.++ |.. +.+ .+.++.
T Consensus 195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~----~~--~lG--a~~vi--~~~~~~~~~~~~~v~~~~ 263 (380)
T 1vj0_A 195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKL----AE--EIG--ADLTL--NRRETSVEERRKAIMDIT 263 (380)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHH----HH--HTT--CSEEE--ETTTSCHHHHHHHHHHHT
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHH----HH--HcC--CcEEE--eccccCcchHHHHHHHHh
Confidence 467899999 8999999999999999 599999985432211 11 111 11233 443 322 233333
Q ss_pred hccCccEEEEcccc
Q 042406 151 NVVAFTHVMHLAAQ 164 (424)
Q Consensus 151 ~~~~~d~vi~~Ag~ 164 (424)
.+.++|+||+++|.
T Consensus 264 ~g~g~Dvvid~~g~ 277 (380)
T 1vj0_A 264 HGRGADFILEATGD 277 (380)
T ss_dssp TTSCEEEEEECSSC
T ss_pred CCCCCcEEEECCCC
Confidence 33357999999974
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.008 Score=55.18 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=48.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHH--HHhhcc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLD--KIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~--~~~~~~ 153 (424)
.+.|++++|.|+++.+|+.++..|++.|+.|+++.|... .+. +.+++.
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~------------------------------~l~l~~~~~~A 211 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS------------------------------TEDMIDYLRTA 211 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC------------------------------HHHHHHHHHTC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC------------------------------CchhhhhhccC
Confidence 578999999999999999999999999999999987321 223 667766
Q ss_pred CccEEEEccccc
Q 042406 154 AFTHVMHLAAQA 165 (424)
Q Consensus 154 ~~d~vi~~Ag~~ 165 (424)
|+||...|..
T Consensus 212 --DIVI~Avg~p 221 (300)
T 4a26_A 212 --DIVIAAMGQP 221 (300)
T ss_dssp --SEEEECSCCT
T ss_pred --CEEEECCCCC
Confidence 9999998863
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0093 Score=56.79 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+.++|.|.||+|.+|+.+++.|.+++. +++.+.+..+.... .... ...... .+ ..|+...+ ++.++++ |
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~-~~~~-~~~~~~-~v---~~dl~~~~--~~~~~~v--D 84 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQS-MESV-FPHLRA-QK---LPTLVSVK--DADFSTV--D 84 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSC-HHHH-CGGGTT-SC---CCCCBCGG--GCCGGGC--S
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCC-HHHh-CchhcC-cc---cccceecc--hhHhcCC--C
Confidence 446899999999999999999999874 77777653322111 1110 000111 11 12433222 3344544 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSS 208 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~ 208 (424)
+||.+++... +...+..+ +.|. ++|-.|+..
T Consensus 85 vVf~atp~~~------------------s~~~a~~~-~aG~--~VId~sa~~ 115 (359)
T 1xyg_A 85 AVFCCLPHGT------------------TQEIIKEL-PTAL--KIVDLSADF 115 (359)
T ss_dssp EEEECCCTTT------------------HHHHHHTS-CTTC--EEEECSSTT
T ss_pred EEEEcCCchh------------------HHHHHHHH-hCCC--EEEECCccc
Confidence 9999987532 23455555 5554 688888743
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0098 Score=57.55 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC----HHHHHHHhhc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND----KSLLDKIFNV 152 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~v~~~~~~ 152 (424)
.|.+|||+|+ |.||...++.+...|+ +|++++++.++.+. . ..-+..++ |..+ .+.+.+...+
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~----a-----~~lGa~~i--~~~~~~~~~~~~~~~~~g 252 (398)
T 2dph_A 185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKL----L-----SDAGFETI--DLRNSAPLRDQIDQILGK 252 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHH----H-----HTTTCEEE--ETTSSSCHHHHHHHHHSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH----H-----HHcCCcEE--cCCCcchHHHHHHHHhCC
Confidence 5788999997 9999999998888898 89999985432111 1 11233433 5443 3445555544
Q ss_pred cCccEEEEcccc
Q 042406 153 VAFTHVMHLAAQ 164 (424)
Q Consensus 153 ~~~d~vi~~Ag~ 164 (424)
.++|+||+++|.
T Consensus 253 ~g~Dvvid~~g~ 264 (398)
T 2dph_A 253 PEVDCGVDAVGF 264 (398)
T ss_dssp SCEEEEEECSCT
T ss_pred CCCCEEEECCCC
Confidence 467999999985
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.027 Score=53.65 Aligned_cols=38 Identities=16% Similarity=-0.011 Sum_probs=33.1
Q ss_pred CC-CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc
Q 042406 78 RG-LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY 115 (424)
Q Consensus 78 ~~-~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 115 (424)
.| .+|+|+||+|.+|...++.+...|++|++++++.+.
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~ 204 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN 204 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccc
Confidence 46 789999999999999999888899999999876543
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.012 Score=56.64 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=56.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
..+|+|+|+|+ |.+|+.+++.+.+.|++|++++........ ...-.++.+|..|.+.+.+++++.++|
T Consensus 9 ~~~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~-----------~~~d~~~~~~~~d~~~l~~~~~~~~~d 76 (391)
T 1kjq_A 9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAM-----------HVAHRSHVINMLDGDALRRVVELEKPH 76 (391)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGG-----------GGSSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCCCCchh-----------hhccceEECCCCCHHHHHHHHHHcCCC
Confidence 45689999987 789999999999999999999875432100 011245678899999999998877789
Q ss_pred EEEEcc
Q 042406 157 HVMHLA 162 (424)
Q Consensus 157 ~vi~~A 162 (424)
.|+...
T Consensus 77 ~v~~~~ 82 (391)
T 1kjq_A 77 YIVPEI 82 (391)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 998744
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.028 Score=52.04 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=32.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
+++|.|.||.|.+|..++..|.+.|++|++++|+.
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~ 55 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 55 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence 46899999889999999999999999999999854
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0045 Score=57.61 Aligned_cols=83 Identities=22% Similarity=0.125 Sum_probs=56.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.+++++|.|++..+|+.+++.|+..|..|++++|+..+... +................++.+.+.+.+++.
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~-----ra~~la~~~~~~t~~~~t~~~~L~e~l~~A-- 246 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-----RGESLKLNKHHVEDLGEYSEDLLKKCSLDS-- 246 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-----SCCCSSCCCCEEEEEEECCHHHHHHHHHHC--
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHh-----HHHHHhhhcccccccccccHhHHHHHhccC--
Confidence 4789999999998889999999999999999999885321111 001111111111111124457889999988
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+||...|..
T Consensus 247 DIVIsAtg~p 256 (320)
T 1edz_A 247 DVVITGVPSE 256 (320)
T ss_dssp SEEEECCCCT
T ss_pred CEEEECCCCC
Confidence 9999988864
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0094 Score=55.12 Aligned_cols=71 Identities=18% Similarity=0.133 Sum_probs=51.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.+++|+|.|+ |.||+.+++.|...|.+|++.+|+.++... .. ..++.++ +.+++.+++++.
T Consensus 152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~----~~-----~~g~~~~-----~~~~l~~~l~~a-- 214 (293)
T 3d4o_A 152 TIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLAR----IA-----EMGMEPF-----HISKAAQELRDV-- 214 (293)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHH----HH-----HTTSEEE-----EGGGHHHHTTTC--
T ss_pred CCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHHH----HH-----HCCCeec-----ChhhHHHHhcCC--
Confidence 468899999996 999999999999999999999985432110 11 1133332 224567777766
Q ss_pred cEEEEccc
Q 042406 156 THVMHLAA 163 (424)
Q Consensus 156 d~vi~~Ag 163 (424)
|+|+++..
T Consensus 215 DvVi~~~p 222 (293)
T 3d4o_A 215 DVCINTIP 222 (293)
T ss_dssp SEEEECCS
T ss_pred CEEEECCC
Confidence 99999874
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.011 Score=55.85 Aligned_cols=93 Identities=24% Similarity=0.179 Sum_probs=55.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEe-CCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD---GVLGLD-NFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~---~V~~~~-r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.|+|+|.||+|.+|+.+++.|.++++ +++.+. +.... . ... .....+.+. |. +++ .++++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g--~-----~~~-~~g~~i~~~--~~-~~~----~~~~~- 69 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG--Q-----RMG-FAESSLRVG--DV-DSF----DFSSV- 69 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT--C-----EEE-ETTEEEECE--EG-GGC----CGGGC-
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCC--C-----ccc-cCCcceEEe--cC-CHH----HhcCC-
Confidence 36899999999999999999997765 445553 31110 0 000 111112222 22 121 14555
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSS 208 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~ 208 (424)
|+||-+.+.. .+..+++.+.+.|. ++|.+|+..
T Consensus 70 -DvV~~a~g~~------------------~s~~~a~~~~~aG~--kvId~Sa~~ 102 (340)
T 2hjs_A 70 -GLAFFAAAAE------------------VSRAHAERARAAGC--SVIDLSGAL 102 (340)
T ss_dssp -SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEETTCTT
T ss_pred -CEEEEcCCcH------------------HHHHHHHHHHHCCC--EEEEeCCCC
Confidence 9999988641 13456677777775 578888764
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.01 Score=55.14 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=51.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.+++|+|.|+ |.||+.+++.|...|.+|++.+|+.++... .. + .++..+ +.+++.+++++.
T Consensus 154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~----~~-~----~g~~~~-----~~~~l~~~l~~a-- 216 (300)
T 2rir_A 154 TIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLAR----IT-E----MGLVPF-----HTDELKEHVKDI-- 216 (300)
T ss_dssp CSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHH----HH-H----TTCEEE-----EGGGHHHHSTTC--
T ss_pred CCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHH----HH-H----CCCeEE-----chhhHHHHhhCC--
Confidence 578999999997 999999999999999999999995422111 10 1 133332 124567777766
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+|+++...
T Consensus 217 DvVi~~~p~ 225 (300)
T 2rir_A 217 DICINTIPS 225 (300)
T ss_dssp SEEEECCSS
T ss_pred CEEEECCCh
Confidence 999998764
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0034 Score=59.50 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC--CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-HHHHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKR--GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-KSLLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~v~~~~~~~~ 154 (424)
.+.+|||+|+ |.||...++.+... |++|++++++.++.+. .+ .++. -.+ .|..+ .+.+.++.++.+
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~----~~--~lGa--~~v--i~~~~~~~~~~~~~~g~g 238 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDF----AL--ELGA--DYV--SEMKDAESLINKLTDGLG 238 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHH----HH--HHTC--SEE--ECHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH----HH--HhCC--CEE--eccccchHHHHHhhcCCC
Confidence 5788999999 99999999999888 9999999985432211 11 1111 122 24433 344444444335
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+||+++|.
T Consensus 239 ~D~vid~~g~ 248 (344)
T 2h6e_A 239 ASIAIDLVGT 248 (344)
T ss_dssp EEEEEESSCC
T ss_pred ccEEEECCCC
Confidence 7999999874
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.023 Score=50.84 Aligned_cols=157 Identities=11% Similarity=0.110 Sum_probs=87.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc---cCc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV---VAF 155 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~---~~~ 155 (424)
|+|+|.|++|.+|+.+++.+.+. |++++.+....+..+.. . . .+.. +.+|.+.++.+.+.+.. .+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~----~----~-~~~D-vvIDfT~p~a~~~~~~~a~~~g~ 70 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLL----T----D-GNTE-VVIDFTHPDVVMGNLEFLIDNGI 70 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHH----H----H-TTCC-EEEECSCTTTHHHHHHHHHHTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHH----h----c-cCCc-EEEEccChHHHHHHHHHHHHcCC
Confidence 57999999999999999999876 88888665433221111 1 1 1223 55788888877655533 366
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCCccc-----------CC-CCCCCCCCCC
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS-DPQPAIVWASSSSVY-----------GV-NKKVPFSEKD 222 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~-~~~~~~v~~SS~~vy-----------g~-~~~~~~~e~~ 222 (424)
++|+-..|... + -...+.++|++. +. .+++.+..+.= .. .+...+.|.+
T Consensus 71 ~~VigTTG~~~--------e--------~~~~l~~aa~~~~~~--~vv~a~N~siGv~ll~~l~~~aa~~~~dieIiE~H 132 (245)
T 1p9l_A 71 HAVVGTTGFTA--------E--------RFQQVESWLVAKPNT--SVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELH 132 (245)
T ss_dssp EEEECCCCCCH--------H--------HHHHHHHHHHTSTTC--EEEECSCCCHHHHHHHHHHHHHGGGCSEEEEEEEE
T ss_pred CEEEcCCCCCH--------H--------HHHHHHHHHHhCCCC--CEEEECCccHHHHHHHHHHHHHHhhcCCEEEEECc
Confidence 88887665311 1 012345555654 43 46666664440 00 0111122221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHH-------------------HhCCcEEEEEeccccCC
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNH-------------------IYGLSITGLRFFTVYGP 264 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~-------------------~~~i~~~~vrp~~v~G~ 264 (424)
....--.+=|.++..+|.+...... ..++.+..+|-|.|.|.
T Consensus 133 H~~K~DaPSGTA~~lae~i~~~~~~~~~~~~~~~~~~~g~r~~~~~~i~i~s~R~g~ivg~ 193 (245)
T 1p9l_A 133 HPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAH 193 (245)
T ss_dssp CTTCCSSSCHHHHHHHHHHHHHTTTSCCCCCCCCSCCTTTTCEEETTEEEEEEECTTCCEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHhhcccccccccccccccCCCCCCCCcceEEEEECCCCCeE
Confidence 1111112236677777776543210 01577889999988875
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0074 Score=54.97 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=48.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.|++++|.|+++.+|+.++..|+.+|+.|+++.+.. ..+.+.+++.
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------------------------~~L~~~~~~A-- 205 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------------------------TDLKSHTTKA-- 205 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SSHHHHHTTC--
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHhcccC--
Confidence 57899999999999999999999999999999987621 1345667766
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+||...|..
T Consensus 206 DIVI~Avg~p 215 (285)
T 3l07_A 206 DILIVAVGKP 215 (285)
T ss_dssp SEEEECCCCT
T ss_pred CEEEECCCCC
Confidence 9999988753
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.023 Score=54.42 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-----HHHHHHHhh
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-----KSLLDKIFN 151 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~v~~~~~ 151 (424)
.+.+|||+|+ |.+|...++.+...|+ +|++++++.++.+.. + .+ +... ..|..+ .+.+.++..
T Consensus 192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~----~--~l---Ga~~-vi~~~~~~~~~~~~~~~~~~ 260 (374)
T 1cdo_A 192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA----K--VF---GATD-FVNPNDHSEPISQVLSKMTN 260 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH----H--HT---TCCE-EECGGGCSSCHHHHHHHHHT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH----H--Hh---CCce-EEeccccchhHHHHHHHHhC
Confidence 5778999996 9999999999999998 799998865433221 1 11 2211 124432 223444444
Q ss_pred ccCccEEEEcccc
Q 042406 152 VVAFTHVMHLAAQ 164 (424)
Q Consensus 152 ~~~~d~vi~~Ag~ 164 (424)
+ ++|+||+++|.
T Consensus 261 ~-g~D~vid~~g~ 272 (374)
T 1cdo_A 261 G-GVDFSLECVGN 272 (374)
T ss_dssp S-CBSEEEECSCC
T ss_pred C-CCCEEEECCCC
Confidence 4 67999999874
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0069 Score=54.84 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=47.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+.|++++|.|+++.+|+.++..|+++|+.|+++.+.. ..+.+.+++. |
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t------------------------------~~L~~~~~~A--D 195 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT------------------------------KDIGSMTRSS--K 195 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHHHS--S
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc------------------------------ccHHHhhccC--C
Confidence 7899999999999999999999999999999997621 2345667766 9
Q ss_pred EEEEcccc
Q 042406 157 HVMHLAAQ 164 (424)
Q Consensus 157 ~vi~~Ag~ 164 (424)
+||...|.
T Consensus 196 IVI~Avg~ 203 (276)
T 3ngx_A 196 IVVVAVGR 203 (276)
T ss_dssp EEEECSSC
T ss_pred EEEECCCC
Confidence 99998875
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0054 Score=56.46 Aligned_cols=41 Identities=22% Similarity=0.279 Sum_probs=34.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhh
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETS 119 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~ 119 (424)
+.++|.|.|+ |.+|..++..|++.|++|++.+|+.+..+..
T Consensus 3 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 43 (283)
T 4e12_A 3 GITNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAA 43 (283)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 3578999986 9999999999999999999999976654443
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.015 Score=56.00 Aligned_cols=70 Identities=23% Similarity=0.242 Sum_probs=54.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+.+|+|+|.|+ |.+|+.+++.+.+.|++|++++.+.+.... ...-..+..|..|.+.+.++++.. |
T Consensus 12 ~~~k~IlIlG~-G~~g~~la~aa~~~G~~vi~~d~~~~~~~~-----------~~ad~~~~~~~~d~~~l~~~~~~~--d 77 (389)
T 3q2o_A 12 LPGKTIGIIGG-GQLGRMMALAAKEMGYKIAVLDPTKNSPCA-----------QVADIEIVASYDDLKAIQHLAEIS--D 77 (389)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTT-----------TTCSEEEECCTTCHHHHHHHHHTC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchH-----------HhCCceEecCcCCHHHHHHHHHhC--C
Confidence 57899999997 889999999999999999999875432100 111245668999999999999876 8
Q ss_pred EEEE
Q 042406 157 HVMH 160 (424)
Q Consensus 157 ~vi~ 160 (424)
+|..
T Consensus 78 vI~~ 81 (389)
T 3q2o_A 78 VVTY 81 (389)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 8743
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0077 Score=54.83 Aligned_cols=58 Identities=24% Similarity=0.273 Sum_probs=47.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.||+++|.|.++.+|+.++..|+..|+.|+++.+.. ..+.+.+++.
T Consensus 158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T------------------------------~~L~~~~~~A-- 205 (286)
T 4a5o_A 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT------------------------------RDLADHVSRA-- 205 (286)
T ss_dssp CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHHTC--
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC------------------------------cCHHHHhccC--
Confidence 47899999999999999999999999999999997622 1245667766
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+||...|..
T Consensus 206 DIVI~Avg~p 215 (286)
T 4a5o_A 206 DLVVVAAGKP 215 (286)
T ss_dssp SEEEECCCCT
T ss_pred CEEEECCCCC
Confidence 9999988753
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0078 Score=56.37 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.|.+|+|+||+|.+|...++.+...|++|+++++.. ..... ..++. -.+ .|..+.+.+.+..+ ++|+
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-----~~~~~--~~lGa--~~~--i~~~~~~~~~~~~~--g~D~ 218 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-----NHAFL--KALGA--EQC--INYHEEDFLLAIST--PVDA 218 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-----HHHHH--HHHTC--SEE--EETTTSCHHHHCCS--CEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-----hHHHH--HHcCC--CEE--EeCCCcchhhhhcc--CCCE
Confidence 578899999999999999999999999999887521 11111 11111 122 35555443455555 4599
Q ss_pred EEEcccc
Q 042406 158 VMHLAAQ 164 (424)
Q Consensus 158 vi~~Ag~ 164 (424)
||++.|.
T Consensus 219 v~d~~g~ 225 (321)
T 3tqh_A 219 VIDLVGG 225 (321)
T ss_dssp EEESSCH
T ss_pred EEECCCc
Confidence 9999874
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.019 Score=53.67 Aligned_cols=67 Identities=10% Similarity=0.051 Sum_probs=47.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
..+|+|.|.|. |.+|..+++.|++.|++|++++|+.+..+. . ...++... .+..+++++. |
T Consensus 29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~----l-----~~~g~~~~-------~~~~e~~~~a--D 89 (320)
T 4dll_A 29 PYARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPARAAS----L-----AALGATIH-------EQARAAARDA--D 89 (320)
T ss_dssp CCCSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHHHHHH----H-----HTTTCEEE-------SSHHHHHTTC--S
T ss_pred cCCCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHHHHHH----H-----HHCCCEee-------CCHHHHHhcC--C
Confidence 46789999986 999999999999999999999996432211 1 11233221 2345666766 9
Q ss_pred EEEEcc
Q 042406 157 HVMHLA 162 (424)
Q Consensus 157 ~vi~~A 162 (424)
+||-+.
T Consensus 90 vVi~~v 95 (320)
T 4dll_A 90 IVVSML 95 (320)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 998765
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.011 Score=55.99 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=48.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCH---HHHHHHhhcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDK---SLLDKIFNVV 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~v~~~~~~~ 153 (424)
.+.+|+|+|| |.+|..+++.+...|+ +|++++++.++.+. ...+ .-.+ .|..+. +.+.++. ..
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~------~~~l---a~~v--~~~~~~~~~~~~~~~~-~~ 230 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAF------ARPY---ADRL--VNPLEEDLLEVVRRVT-GS 230 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGG------GTTT---CSEE--ECTTTSCHHHHHHHHH-SS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHH------HHHh---HHhc--cCcCccCHHHHHHHhc-CC
Confidence 5678999999 9999999999999999 99999985432111 1111 1112 355442 2333333 33
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
++|+||+++|.
T Consensus 231 g~D~vid~~g~ 241 (343)
T 2dq4_A 231 GVEVLLEFSGN 241 (343)
T ss_dssp CEEEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 67999999874
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.01 Score=56.89 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.|.+|||+|+ |.+|...++.+...|++|++++++.++.+... + ++. -.+ .|..+.+.++++.. ++|+
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~-----~-lGa--~~v--i~~~~~~~~~~~~~--g~Dv 260 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-----A-LGA--DEV--VNSRNADEMAAHLK--SFDF 260 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-----H-HTC--SEE--EETTCHHHHHTTTT--CEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-----H-cCC--cEE--eccccHHHHHHhhc--CCCE
Confidence 5778999998 88999999999899999999998655432211 1 111 122 36666655555443 5699
Q ss_pred EEEcccc
Q 042406 158 VMHLAAQ 164 (424)
Q Consensus 158 vi~~Ag~ 164 (424)
||+++|.
T Consensus 261 vid~~g~ 267 (369)
T 1uuf_A 261 ILNTVAA 267 (369)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 9999985
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.037 Score=52.27 Aligned_cols=69 Identities=13% Similarity=0.121 Sum_probs=51.2
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..+.||+|.|.|- |-||+.+++.|...|.+|++.+|+...... . .++.++ +++++++++.
T Consensus 169 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------~-----~g~~~~-------~~l~ell~~s- 228 (345)
T 4g2n_A 169 MGLTGRRLGIFGM-GRIGRAIATRARGFGLAIHYHNRTRLSHAL------E-----EGAIYH-------DTLDSLLGAS- 228 (345)
T ss_dssp CCCTTCEEEEESC-SHHHHHHHHHHHTTTCEEEEECSSCCCHHH------H-----TTCEEC-------SSHHHHHHTC-
T ss_pred cccCCCEEEEEEe-ChhHHHHHHHHHHCCCEEEEECCCCcchhh------h-----cCCeEe-------CCHHHHHhhC-
Confidence 4688999999996 999999999999999999999986432111 0 022221 3567788877
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
|+|+.+.-.
T Consensus 229 -DvV~l~~Pl 237 (345)
T 4g2n_A 229 -DIFLIAAPG 237 (345)
T ss_dssp -SEEEECSCC
T ss_pred -CEEEEecCC
Confidence 999887653
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0075 Score=57.15 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=57.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+++|.|.||+|.+|+.+++.|.+++. +++.+.+..+..... ... ...+. +. ....+.+.+ + +++ +|+
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~-~~~-~~~~~--g~--~~~~~~~~~---~-~~~--vDv 71 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPV-HFV-HPNLR--GR--TNLKFVPPE---K-LEP--ADI 71 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBG-GGT-CGGGT--TT--CCCBCBCGG---G-CCC--CSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchh-HHh-Cchhc--Cc--ccccccchh---H-hcC--CCE
Confidence 47899999999999999999998865 777776533211100 000 00010 10 011222322 2 344 499
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCC
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSS 207 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~ 207 (424)
||.+++... +..+++.+.+.|. ++|-.|+.
T Consensus 72 V~~a~g~~~------------------s~~~a~~~~~aG~--~VId~Sa~ 101 (345)
T 2ozp_A 72 LVLALPHGV------------------FAREFDRYSALAP--VLVDLSAD 101 (345)
T ss_dssp EEECCCTTH------------------HHHTHHHHHTTCS--EEEECSST
T ss_pred EEEcCCcHH------------------HHHHHHHHHHCCC--EEEEcCcc
Confidence 999987521 3445666667765 68888885
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.02 Score=54.26 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=68.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCc--------------hhhhHHH----HHhhhhccCCeEEEE
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNY--------------YETSLKK----ARKGLLERAGVFVID 137 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~--------------~~~~~~~----~~~~~~~~~~v~~~~ 137 (424)
+...+|+|.|+ |++|.++++.|+..|. +++++|...-. ....+.. .-.+.+..-.+..+.
T Consensus 34 L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 112 (346)
T 1y8q_A 34 LRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT 112 (346)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEe
Confidence 45668999997 8999999999999997 78888654210 0001111 111122233456666
Q ss_pred ccCCCHHHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 138 ~Dl~d~~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
.++.+ ...+++++. |+||.+... ...-..+-++|.+.+. .+|..++.+.+|.
T Consensus 113 ~~~~~--~~~~~~~~~--dvVv~~~d~-----------------~~~r~~ln~~~~~~~i--p~i~~~~~G~~G~ 164 (346)
T 1y8q_A 113 EDIEK--KPESFFTQF--DAVCLTCCS-----------------RDVIVKVDQICHKNSI--KFFTGDVFGYHGY 164 (346)
T ss_dssp SCGGG--CCHHHHTTC--SEEEEESCC-----------------HHHHHHHHHHHHHTTC--EEEEEEEEBTEEE
T ss_pred cccCc--chHHHhcCC--CEEEEcCCC-----------------HHHHHHHHHHHHHcCC--CEEEEeecccEEE
Confidence 55543 234567755 999986421 1122345667777775 6888877776663
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.013 Score=53.25 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=35.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhh
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET 118 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 118 (424)
+++++|+|+ |+.|+.++..|++.|.+|++++|+.++.+.
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~ 156 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDF 156 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 899999997 999999999999999999999998765444
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0074 Score=56.30 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=48.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
..++|+|.|.|. |.+|..+++.|++.|++|++++|+.+..+... ..++.. ..+..+++++.
T Consensus 18 ~~~m~~I~iIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~---------~~g~~~-------~~~~~~~~~~a-- 78 (310)
T 3doj_A 18 GSHMMEVGFLGL-GIMGKAMSMNLLKNGFKVTVWNRTLSKCDELV---------EHGASV-------CESPAEVIKKC-- 78 (310)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH---------HTTCEE-------CSSHHHHHHHC--
T ss_pred cccCCEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH---------HCCCeE-------cCCHHHHHHhC--
Confidence 456789999985 99999999999999999999999765433221 112221 12344566666
Q ss_pred cEEEEcc
Q 042406 156 THVMHLA 162 (424)
Q Consensus 156 d~vi~~A 162 (424)
|+||-+.
T Consensus 79 Dvvi~~v 85 (310)
T 3doj_A 79 KYTIAML 85 (310)
T ss_dssp SEEEECC
T ss_pred CEEEEEc
Confidence 9888765
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.14 E-value=0.028 Score=53.79 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=49.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-----HHHHHHHhh
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-----KSLLDKIFN 151 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~v~~~~~ 151 (424)
.+.+|||+|+ |.||..+++.+...|+ +|++++++.++.+.. + .+.. -.+ .|..+ .+.+.++..
T Consensus 191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~----~--~lGa--~~v--i~~~~~~~~~~~~~~~~~~ 259 (374)
T 2jhf_A 191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKA----K--EVGA--TEC--VNPQDYKKPIQEVLTEMSN 259 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH----H--HTTC--SEE--ECGGGCSSCHHHHHHHHTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----H--HhCC--ceE--ecccccchhHHHHHHHHhC
Confidence 5778999995 9999999999999998 799998865433221 1 1111 122 24432 223444433
Q ss_pred ccCccEEEEcccc
Q 042406 152 VVAFTHVMHLAAQ 164 (424)
Q Consensus 152 ~~~~d~vi~~Ag~ 164 (424)
+ ++|+||+++|.
T Consensus 260 ~-g~D~vid~~g~ 271 (374)
T 2jhf_A 260 G-GVDFSFEVIGR 271 (374)
T ss_dssp S-CBSEEEECSCC
T ss_pred C-CCcEEEECCCC
Confidence 3 67999999874
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.036 Score=55.88 Aligned_cols=36 Identities=36% Similarity=0.366 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFN 113 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~ 113 (424)
+.+.+|+|.|+ |++|..+++.|+..|. +++++|++.
T Consensus 324 L~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~ 360 (615)
T 4gsl_A 324 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT 360 (615)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 46789999998 9999999999999996 788888864
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.029 Score=53.74 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=49.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-----HHHHHHHhh
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-----KSLLDKIFN 151 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~v~~~~~ 151 (424)
.|.+|+|+|+ |.||...++.+...|+ +|++++++.++.+.. + .+ +... ..|..+ .+.+.++..
T Consensus 195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a----~--~l---Ga~~-vi~~~~~~~~~~~~v~~~~~ 263 (376)
T 1e3i_A 195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKA----K--AL---GATD-CLNPRELDKPVQDVITELTA 263 (376)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH----H--HT---TCSE-EECGGGCSSCHHHHHHHHHT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH----H--Hh---CCcE-EEccccccchHHHHHHHHhC
Confidence 5778999996 9999999999999998 799998865432221 1 11 1111 124432 233444444
Q ss_pred ccCccEEEEcccc
Q 042406 152 VVAFTHVMHLAAQ 164 (424)
Q Consensus 152 ~~~~d~vi~~Ag~ 164 (424)
+ ++|+||+++|.
T Consensus 264 ~-g~Dvvid~~G~ 275 (376)
T 1e3i_A 264 G-GVDYSLDCAGT 275 (376)
T ss_dssp S-CBSEEEESSCC
T ss_pred C-CccEEEECCCC
Confidence 4 67999999874
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.024 Score=55.83 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=74.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC-----CCeEEEEeCCCCchhhhHHHHHhhh--hccCCeEEEEccCCCHHHHHHHhh
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKR-----GDGVLGLDNFNNYYETSLKKARKGL--LERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~-----g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
.++|.|.||++..|..++..|+++ +.+|+++|++.+..+.... ..... .......+... +| .+++++
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~-~~~~~l~~~~~~~~I~~t--~D---~~eal~ 101 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAG-ACDVFIREKAPDIEFAAT--TD---PEEAFT 101 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHH-HHHHHHHHHCTTSEEEEE--SC---HHHHHS
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHH-HHHHHhccCCCCCEEEEE--CC---HHHHHc
Confidence 468999999777688898889888 6789999998765444221 11111 11112222221 23 445677
Q ss_pred ccCccEEEEcccccCchhhccCh------------------HHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 152 VVAFTHVMHLAAQAGVRYAMQNP------------------NSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 152 ~~~~d~vi~~Ag~~~~~~~~~~~------------------~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
+. |+||..++....+....+. -.....|+.....+++.+++..+...+|.+|-
T Consensus 102 ~A--D~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TN 172 (472)
T 1u8x_X 102 DV--DFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSN 172 (472)
T ss_dssp SC--SEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CC--CEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 77 9999999874322111111 11245567778888999988887756665554
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.011 Score=53.79 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=28.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEE-EeCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKR-GDGVLG-LDNF 112 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~-~~r~ 112 (424)
+++++|.|+|++|.+|+.+++.+.+. +.+++. ++|+
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~ 42 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRT 42 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCT
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 45689999999999999999999876 567666 4664
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.013 Score=57.39 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=31.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY 115 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 115 (424)
|+|.|.| .|.+|..++..|++.|++|++++|+.+.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~~~ 35 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTK 35 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 5799998 5999999999999999999999996543
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.022 Score=54.99 Aligned_cols=75 Identities=21% Similarity=0.185 Sum_probs=50.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC----HHHHHHHhhc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND----KSLLDKIFNV 152 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~v~~~~~~ 152 (424)
.|.+|||+|+ |.||...++.+...|+ +|++++++.++.+. . . .-+..+ .|..+ .+.+.+...+
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~----a--~---~lGa~~--i~~~~~~~~~~~v~~~t~g 252 (398)
T 1kol_A 185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAH----A--K---AQGFEI--ADLSLDTPLHEQIAALLGE 252 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHH----H--H---HTTCEE--EETTSSSCHHHHHHHHHSS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHH----H--H---HcCCcE--EccCCcchHHHHHHHHhCC
Confidence 5778999995 9999999998888998 68888875432111 1 1 123343 34443 2345555444
Q ss_pred cCccEEEEcccc
Q 042406 153 VAFTHVMHLAAQ 164 (424)
Q Consensus 153 ~~~d~vi~~Ag~ 164 (424)
.++|+||.++|.
T Consensus 253 ~g~Dvvid~~G~ 264 (398)
T 1kol_A 253 PEVDCAVDAVGF 264 (398)
T ss_dssp SCEEEEEECCCT
T ss_pred CCCCEEEECCCC
Confidence 357999999985
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.039 Score=51.09 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=35.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhh
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET 118 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 118 (424)
...++|.|.|+ |.+|..++..|++.|++|++++|+.+..+.
T Consensus 13 ~~~~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~~~ 53 (302)
T 1f0y_A 13 IIVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAK 53 (302)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred ccCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 34578999998 999999999999999999999997655443
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0075 Score=57.51 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCH-HHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDK-SLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~v~~~~~~~~~d 156 (424)
.+.+|||+|+ |.+|..+++.+...|++|++++++.++.+.... ++ .-.+ .|..+. +..+++.. ++|
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~------lG--a~~v--~~~~~~~~~~~~~~~--~~D 245 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK------MG--ADHY--IATLEEGDWGEKYFD--TFD 245 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH------HT--CSEE--EEGGGTSCHHHHSCS--CEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH------cC--CCEE--EcCcCchHHHHHhhc--CCC
Confidence 5788999999 999999999988899999999987654332211 11 1122 244433 33333332 569
Q ss_pred EEEEcccc
Q 042406 157 HVMHLAAQ 164 (424)
Q Consensus 157 ~vi~~Ag~ 164 (424)
+||+++|.
T Consensus 246 ~vid~~g~ 253 (360)
T 1piw_A 246 LIVVCASS 253 (360)
T ss_dssp EEEECCSC
T ss_pred EEEECCCC
Confidence 99999985
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.022 Score=54.20 Aligned_cols=73 Identities=10% Similarity=0.130 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCChhHHHH-HHHH-HhCCCe-EEEEeCCCC---chhhhHHHHHhhhhccCCeEEEEccCCCH--HHHHHH
Q 042406 78 RGLTVLVTGAAGFVGSHV-SLAL-KKRGDG-VLGLDNFNN---YYETSLKKARKGLLERAGVFVIDADINDK--SLLDKI 149 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l-~~~L-~~~g~~-V~~~~r~~~---~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~--~~v~~~ 149 (424)
++.+|+|+|| |.+|... ++.+ ...|++ |++++++.+ +.+.. + .-+...+ |..+. ..+.++
T Consensus 172 ~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~----~-----~lGa~~v--~~~~~~~~~i~~~ 239 (357)
T 2b5w_A 172 DPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII----E-----ELDATYV--DSRQTPVEDVPDV 239 (357)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHH----H-----HTTCEEE--ETTTSCGGGHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHH----H-----HcCCccc--CCCccCHHHHHHh
Confidence 4478999999 9999999 8877 678987 999998664 32211 1 1233444 55432 225555
Q ss_pred hhccCccEEEEcccc
Q 042406 150 FNVVAFTHVMHLAAQ 164 (424)
Q Consensus 150 ~~~~~~d~vi~~Ag~ 164 (424)
.+ ++|+||+++|.
T Consensus 240 -~g-g~Dvvid~~g~ 252 (357)
T 2b5w_A 240 -YE-QMDFIYEATGF 252 (357)
T ss_dssp -SC-CEEEEEECSCC
T ss_pred -CC-CCCEEEECCCC
Confidence 44 67999999874
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0076 Score=57.49 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=53.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccC----------------
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI---------------- 140 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl---------------- 140 (424)
..+.+|+|+|+ |-+|..+++.+...|++|++++|+....+... .-+..++..|+
T Consensus 182 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~---------~lGa~~~~l~~~~~~~~gya~~~~~~~ 251 (381)
T 3p2y_A 182 VKPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVR---------SVGAQWLDLGIDAAGEGGYARELSEAE 251 (381)
T ss_dssp ECCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH---------HTTCEECCCC-------------CHHH
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH---------HcCCeEEeccccccccccchhhhhHHH
Confidence 46678999998 99999999999999999999999754332211 11333333221
Q ss_pred --CCHHHHHHHhhccCccEEEEcccc
Q 042406 141 --NDKSLLDKIFNVVAFTHVMHLAAQ 164 (424)
Q Consensus 141 --~d~~~v~~~~~~~~~d~vi~~Ag~ 164 (424)
.+.+.+.+++++. |+||.++..
T Consensus 252 ~~~~~~~l~e~l~~a--DIVI~tv~i 275 (381)
T 3p2y_A 252 RAQQQQALEDAITKF--DIVITTALV 275 (381)
T ss_dssp HHHHHHHHHHHHTTC--SEEEECCCC
T ss_pred HhhhHHHHHHHHhcC--CEEEECCCC
Confidence 1234677778877 999998754
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.041 Score=52.51 Aligned_cols=75 Identities=17% Similarity=0.204 Sum_probs=49.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-----HHHHHHHhh
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-----KSLLDKIFN 151 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~v~~~~~ 151 (424)
.|.+|||+|+ |.+|...++.+...|+ +|++++++.++.+... .++. -.+ .|..+ .+.+.++..
T Consensus 190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~------~lGa--~~v--i~~~~~~~~~~~~v~~~~~ 258 (373)
T 2fzw_A 190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK------EFGA--TEC--INPQDFSKPIQEVLIEMTD 258 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH------HHTC--SEE--ECGGGCSSCHHHHHHHHTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH------HcCC--ceE--eccccccccHHHHHHHHhC
Confidence 5778999996 9999999998888998 7999988655432211 1111 122 24332 233444443
Q ss_pred ccCccEEEEcccc
Q 042406 152 VVAFTHVMHLAAQ 164 (424)
Q Consensus 152 ~~~~d~vi~~Ag~ 164 (424)
+ ++|+||+++|.
T Consensus 259 ~-g~D~vid~~g~ 270 (373)
T 2fzw_A 259 G-GVDYSFECIGN 270 (373)
T ss_dssp S-CBSEEEECSCC
T ss_pred C-CCCEEEECCCc
Confidence 3 67999999874
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.049 Score=51.69 Aligned_cols=35 Identities=37% Similarity=0.358 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFN 113 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~ 113 (424)
.|.+|||+|+ |.+|...++.+...|+ +|++++++.
T Consensus 171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~ 206 (356)
T 1pl8_A 171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSA 206 (356)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 5778999996 9999999998888998 899999854
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.023 Score=53.41 Aligned_cols=103 Identities=15% Similarity=0.083 Sum_probs=58.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCC--chhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNN--YYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~--~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
+++|.|.||+|++|+.|++.|.++ +.++..+...++ .........-........+.+... .+.+ ++++++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~--~~~~---~~~~~~-- 76 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPM--SDIS---EFSPGV-- 76 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEE--SSGG---GTCTTC--
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEecc--CCHH---HHhcCC--
Confidence 478999999999999999999985 457777754331 111111111000111112333322 0222 222445
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCc
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSS 208 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~ 208 (424)
|+||-+.+.. -+..+++.+.+.|. ++|-.|+..
T Consensus 77 Dvvf~a~p~~------------------~s~~~~~~~~~~g~--~vIDlSa~f 109 (337)
T 3dr3_A 77 DVVFLATAHE------------------VSHDLAPQFLEAGC--VVFDLSGAF 109 (337)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEECSSTT
T ss_pred CEEEECCChH------------------HHHHHHHHHHHCCC--EEEEcCCcc
Confidence 9999887531 12345555666665 788888863
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.019 Score=54.55 Aligned_cols=75 Identities=20% Similarity=0.106 Sum_probs=52.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.|.+|+|+|+ |.||...++.+...|++|++++++.++.+. .. ..++.. .+ .|..+.+.+.++.. ++|+
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~----~~-~~lGa~--~v--i~~~~~~~~~~~~~--g~D~ 247 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREE----AL-QDLGAD--DY--VIGSDQAKMSELAD--SLDY 247 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHH----HH-TTSCCS--CE--EETTCHHHHHHSTT--TEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHH----HH-HHcCCc--ee--eccccHHHHHHhcC--CCCE
Confidence 5788999996 999999999988899999999986543211 11 111111 12 35556666666554 4699
Q ss_pred EEEcccc
Q 042406 158 VMHLAAQ 164 (424)
Q Consensus 158 vi~~Ag~ 164 (424)
||+++|.
T Consensus 248 vid~~g~ 254 (357)
T 2cf5_A 248 VIDTVPV 254 (357)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999985
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.025 Score=54.34 Aligned_cols=39 Identities=26% Similarity=0.265 Sum_probs=34.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY 115 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 115 (424)
...+++|+|+|+ |.+|..+++.+...|++|++.+|+..+
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~ 207 (384)
T 1l7d_A 169 TVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAAT 207 (384)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTT
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 357889999996 999999999999999999999997654
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.015 Score=54.01 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=46.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
..+|+|.|.|. |.+|..+++.|++.|++|++++|+.+..+... . .++.. . .+..+++++. |
T Consensus 7 ~~~~~IgiIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~----~-----~g~~~----~---~~~~e~~~~a--D 67 (306)
T 3l6d_A 7 SFEFDVSVIGL-GAMGTIMAQVLLKQGKRVAIWNRSPGKAAALV----A-----AGAHL----C---ESVKAALSAS--P 67 (306)
T ss_dssp CCSCSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHH----H-----HTCEE----C---SSHHHHHHHS--S
T ss_pred cCCCeEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----H-----CCCee----c---CCHHHHHhcC--C
Confidence 34678999985 99999999999999999999999654322211 1 12211 1 2345566666 9
Q ss_pred EEEEcc
Q 042406 157 HVMHLA 162 (424)
Q Consensus 157 ~vi~~A 162 (424)
+||-+.
T Consensus 68 vVi~~v 73 (306)
T 3l6d_A 68 ATIFVL 73 (306)
T ss_dssp EEEECC
T ss_pred EEEEEe
Confidence 999775
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.02 Score=55.89 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=56.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
..|+|+|+|+ |.+|+.+++.+.+.|++|++++....... ... .-.++.+|..|.+.+.++++..++|.
T Consensus 18 ~~~~ili~g~-g~~g~~~~~a~~~~G~~v~~v~~~~~~~~-----~~~------ad~~~~~~~~d~~~l~~~~~~~~~d~ 85 (433)
T 2dwc_A 18 SAQKILLLGS-GELGKEIAIEAQRLGVEVVAVDRYANAPA-----MQV------AHRSYVGNMMDKDFLWSVVEREKPDA 85 (433)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHHTTCEEEEEESSTTCHH-----HHH------SSEEEESCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChh-----hhh------cceEEECCCCCHHHHHHHHHHcCCCE
Confidence 4578999987 78999999999999999999987543210 000 11456789999999999988667899
Q ss_pred EEEccc
Q 042406 158 VMHLAA 163 (424)
Q Consensus 158 vi~~Ag 163 (424)
|+....
T Consensus 86 V~~~~e 91 (433)
T 2dwc_A 86 IIPEIE 91 (433)
T ss_dssp EEECSS
T ss_pred EEECcc
Confidence 987554
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.035 Score=54.45 Aligned_cols=120 Identities=11% Similarity=0.039 Sum_probs=74.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC-----CCeEEEEeCCC--CchhhhHHHHHhhh--hccCCeEEEEccCCCHHHHHHH
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKR-----GDGVLGLDNFN--NYYETSLKKARKGL--LERAGVFVIDADINDKSLLDKI 149 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~-----g~~V~~~~r~~--~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~v~~~ 149 (424)
.|+|.|.||++..|..++..|+++ +.+|+++|++. +..+.... ..... .......+... +| .+++
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~-~~~~~~~~~~~~~~i~~t--~D---~~ea 80 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGA-LAKRMVEKAGVPIEIHLT--LD---RRRA 80 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHH-HHHHHHHHTTCCCEEEEE--SC---HHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHH-HHHHHHhhcCCCcEEEEe--CC---HHHH
Confidence 468999999887799999999984 57899999977 55443211 11111 11122333221 23 4457
Q ss_pred hhccCccEEEEcccccCchhhccChH------------------HHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 150 FNVVAFTHVMHLAAQAGVRYAMQNPN------------------SYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 150 ~~~~~~d~vi~~Ag~~~~~~~~~~~~------------------~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
+++. |+||..++....+....+.. .....|+.....+++.+++..+...+|.+|-
T Consensus 81 l~gA--D~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tN 153 (450)
T 1s6y_A 81 LDGA--DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTN 153 (450)
T ss_dssp HTTC--SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred hCCC--CEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 7777 99999998743221111100 1345677778889999998887756665554
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.012 Score=56.91 Aligned_cols=39 Identities=26% Similarity=0.217 Sum_probs=34.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY 115 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 115 (424)
...+++|+|+|+ |.+|..+++.+...|++|++++++...
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~ 207 (401)
T 1x13_A 169 KVPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEV 207 (401)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGG
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 356889999997 999999999999999999999996543
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.051 Score=50.83 Aligned_cols=70 Identities=11% Similarity=0.181 Sum_probs=51.3
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
...+.||+|.|.|- |-||+.+++.|...|.+|++.+|+...... -...+. .+++.+++++.
T Consensus 132 ~~~l~gktvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-------------~~~~~~-----~~~l~ell~~a 192 (324)
T 3evt_A 132 TSTLTGQQLLIYGT-GQIGQSLAAKASALGMHVIGVNTTGHPADH-------------FHETVA-----FTATADALATA 192 (324)
T ss_dssp CCCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSCCCCTT-------------CSEEEE-----GGGCHHHHHHC
T ss_pred CccccCCeEEEECc-CHHHHHHHHHHHhCCCEEEEECCCcchhHh-------------Hhhccc-----cCCHHHHHhhC
Confidence 34688999999996 999999999999999999999996532110 001111 23566778877
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
|+|+.+.-.
T Consensus 193 --DvV~l~lPl 201 (324)
T 3evt_A 193 --NFIVNALPL 201 (324)
T ss_dssp --SEEEECCCC
T ss_pred --CEEEEcCCC
Confidence 999887643
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.022 Score=53.72 Aligned_cols=65 Identities=14% Similarity=0.028 Sum_probs=49.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..+.||+|.|.|. |-||+.+++.|...|.+|++.+|+.... ..... ..++.+++++.
T Consensus 167 ~~l~gktiGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~--------------~~~~~-------~~sl~ell~~a- 223 (340)
T 4dgs_A 167 HSPKGKRIGVLGL-GQIGRALASRAEAFGMSVRYWNRSTLSG--------------VDWIA-------HQSPVDLARDS- 223 (340)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCTT--------------SCCEE-------CSSHHHHHHTC-
T ss_pred ccccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCcccc--------------cCcee-------cCCHHHHHhcC-
Confidence 4688999999997 9999999999999999999999864320 11111 13567788877
Q ss_pred ccEEEEccc
Q 042406 155 FTHVMHLAA 163 (424)
Q Consensus 155 ~d~vi~~Ag 163 (424)
|+|+.+.-
T Consensus 224 -DvVil~vP 231 (340)
T 4dgs_A 224 -DVLAVCVA 231 (340)
T ss_dssp -SEEEECC-
T ss_pred -CEEEEeCC
Confidence 99998764
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.012 Score=55.84 Aligned_cols=71 Identities=18% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
..|.+|||+|+ |.||...++.+...|++|++++++.++.+.. + .+ +...+. .+.+.+.+ ++|
T Consensus 175 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~----~--~l---Ga~~v~---~~~~~~~~-----~~D 236 (348)
T 3two_A 175 TKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDA----L--SM---GVKHFY---TDPKQCKE-----ELD 236 (348)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHH----H--HT---TCSEEE---SSGGGCCS-----CEE
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH----H--hc---CCCeec---CCHHHHhc-----CCC
Confidence 35788999997 9999999999999999999999876543321 1 11 122221 34433322 569
Q ss_pred EEEEccccc
Q 042406 157 HVMHLAAQA 165 (424)
Q Consensus 157 ~vi~~Ag~~ 165 (424)
+||+++|..
T Consensus 237 ~vid~~g~~ 245 (348)
T 3two_A 237 FIISTIPTH 245 (348)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCcH
Confidence 999999853
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.033 Score=53.21 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC-----HHHHHHHhh
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND-----KSLLDKIFN 151 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~v~~~~~ 151 (424)
.+.+|||+|+ |.||...++.+...|+ +|++++++.++.+.. + .++. -.++ |..+ .+.+.++..
T Consensus 191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a----~--~lGa--~~vi--~~~~~~~~~~~~i~~~t~ 259 (373)
T 1p0f_A 191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA----I--ELGA--TECL--NPKDYDKPIYEVICEKTN 259 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH----H--HTTC--SEEE--CGGGCSSCHHHHHHHHTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH----H--HcCC--cEEE--ecccccchHHHHHHHHhC
Confidence 5788999996 9999999998888898 799998865433221 1 1111 1222 3332 233444444
Q ss_pred ccCccEEEEcccc
Q 042406 152 VVAFTHVMHLAAQ 164 (424)
Q Consensus 152 ~~~~d~vi~~Ag~ 164 (424)
+ ++|+||+++|.
T Consensus 260 g-g~Dvvid~~g~ 271 (373)
T 1p0f_A 260 G-GVDYAVECAGR 271 (373)
T ss_dssp S-CBSEEEECSCC
T ss_pred C-CCCEEEECCCC
Confidence 4 67999999874
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.017 Score=55.55 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=53.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEcc----------------C
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD----------------I 140 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D----------------l 140 (424)
..+.+|+|+|+ |-+|..+++.+...|++|++.|++....+.... -+..++..+ +
T Consensus 188 v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~---------~G~~~~~~~~~~~~d~~~~~~ya~e~ 257 (405)
T 4dio_A 188 VPAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVAS---------LGAKFIAVEDEEFKAAETAGGYAKEM 257 (405)
T ss_dssp ECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH---------TTCEECCCCC----------------
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH---------cCCceeecccccccccccccchhhhc
Confidence 35678999998 999999999999999999999997654322111 122232222 2
Q ss_pred CC------HHHHHHHhhccCccEEEEccccc
Q 042406 141 ND------KSLLDKIFNVVAFTHVMHLAAQA 165 (424)
Q Consensus 141 ~d------~~~v~~~~~~~~~d~vi~~Ag~~ 165 (424)
++ .+.+.+++++. |+||+++.+.
T Consensus 258 s~~~~~~~~~~l~e~l~~a--DVVI~tvlip 286 (405)
T 4dio_A 258 SGEYQVKQAALVAEHIAKQ--DIVITTALIP 286 (405)
T ss_dssp -CHHHHHHHHHHHHHHHTC--SEEEECCCCS
T ss_pred chhhhhhhHhHHHHHhcCC--CEEEECCcCC
Confidence 23 34778888877 9999987653
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.016 Score=55.25 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=47.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh-CCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC--HHHHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKK-RGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND--KSLLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~v~~~~~~~~ 154 (424)
.+.+|||+||+|.+|...++.+.. .|.+|++++++.++.+. . ..+ +...+ .|..+ .+.+.+. ...+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~----~--~~l---Gad~v-i~~~~~~~~~v~~~-~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEW----V--KSL---GAHHV-IDHSKPLAAEVAAL-GLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHH----H--HHT---TCSEE-ECTTSCHHHHHHTT-CSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH----H--HHc---CCCEE-EeCCCCHHHHHHHh-cCCC
Confidence 577899999999999988887766 58999999985432211 1 111 22211 24333 1222222 2236
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+||+++|.
T Consensus 240 ~Dvvid~~g~ 249 (363)
T 4dvj_A 240 PAFVFSTTHT 249 (363)
T ss_dssp EEEEEECSCH
T ss_pred ceEEEECCCc
Confidence 7999999874
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.065 Score=52.22 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=32.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
..+.+|.|.|. |++|..++..|++.|++|+++|.+.+
T Consensus 19 ~~m~~IaViGl-GYVGLp~A~~~A~~G~~V~g~Did~~ 55 (444)
T 3vtf_A 19 SHMASLSVLGL-GYVGVVHAVGFALLGHRVVGYDVNPS 55 (444)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred CCCCEEEEEcc-CHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 45678999985 99999999999999999999998654
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.019 Score=55.63 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=54.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+.+++|+|.|| |.+|+.+++.+.+.|++|++++ +.+..... .. .....+..|..|.+.+.++++.+ |
T Consensus 22 m~~~~I~ilGg-G~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~--------~a-d~~~~~~~~~~d~~~l~~~a~~~--d 88 (403)
T 3k5i_A 22 WNSRKVGVLGG-GQLGRMLVESANRLNIQVNVLD-ADNSPAKQ--------IS-AHDGHVTGSFKEREAVRQLAKTC--D 88 (403)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEE-STTCTTGG--------GC-CSSCCEESCTTCHHHHHHHHTTC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE-CCCCcHHH--------hc-cccceeecCCCCHHHHHHHHHhC--C
Confidence 46789999998 8999999999999999999999 54321110 01 11245778999999999999876 8
Q ss_pred EEEE
Q 042406 157 HVMH 160 (424)
Q Consensus 157 ~vi~ 160 (424)
+|+-
T Consensus 89 ~i~~ 92 (403)
T 3k5i_A 89 VVTA 92 (403)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.018 Score=54.69 Aligned_cols=32 Identities=28% Similarity=0.280 Sum_probs=27.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDN 111 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r 111 (424)
++|.|.||+|.+|+.+++.|.+++ .+|+.+.+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~ 41 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAA 41 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 589999999999999999998875 47877764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 424 | ||||
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-78 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 8e-78 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-72 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 4e-70 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 5e-68 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 1e-67 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 3e-62 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 4e-62 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 1e-57 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-56 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 1e-55 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 9e-55 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 1e-53 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 8e-53 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 4e-51 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 6e-45 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 3e-38 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 9e-29 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 2e-28 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 2e-24 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 1e-23 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 6e-17 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 2e-16 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 5e-16 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 1e-15 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 1e-14 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 4e-09 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 1e-07 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 2e-05 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 4e-05 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 8e-05 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 9e-05 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 1e-04 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 1e-04 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 3e-04 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 4e-04 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 4e-04 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 6e-04 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 0.001 | |
| d2fr1a1 | 259 | c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI | 0.001 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 0.002 | |
| d1y7ta1 | 154 | c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th | 0.002 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 0.002 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 0.003 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 0.003 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 0.003 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 0.003 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 0.004 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 0.004 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 0.004 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 0.004 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 0.004 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 0.004 |
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 244 bits (624), Expect = 3e-78
Identities = 80/354 (22%), Positives = 137/354 (38%), Gaps = 46/354 (12%)
Query: 82 VLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+L+TG AGF+GS V + K D V+ +D ++ + E ADI
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTY---AGNLESLSDISESNRYNFEHADI 59
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D + + +IF VMHLAA++ V ++ P +++E+NI G LLE +
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALG 119
Query: 201 --------IVWASSSSVYGVNKK---------VPFSEKDRTDQPASLYAATKKAGEAIAH 243
S+ VYG +P + P+S Y+A+K + + +
Sbjct: 120 EDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHLVR 179
Query: 244 AYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303
A+ YGL YGP+ P+ + + GK + +Y G + RD+ Y+
Sbjct: 180 AWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYG--KGDQI-RDWLYV 236
Query: 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLL--------EK 355
+D + + K +N+G +V + K
Sbjct: 237 EDHARALHMVVTEGKAG-------------ETYNIGGHNEKKNLDVVFTICDLLDEIVPK 283
Query: 356 ILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
+ + + R G + + RELG+ P E+G++K V WYL+
Sbjct: 284 ATSYREQITYVA-DRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLA 336
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 241 bits (617), Expect = 8e-78
Identities = 83/336 (24%), Positives = 143/336 (42%), Gaps = 37/336 (11%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+TG AGFVGSH++ L G V +DNF + +++ + +I+ D+
Sbjct: 4 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEH----WIGHENFELINHDVV 59
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
+ ++ + HLA+ A M NP +++N G +N+L K + +
Sbjct: 60 EPLYIE-------VDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR--L 110
Query: 202 VWASSSSVYGVNKKVPFSEKDRTD----QPASLYAATKKAGEAIAHAYNHIYGLSITGLR 257
+ AS+S VYG + P SE P + Y K+ E + +AY G+ + R
Sbjct: 111 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 170
Query: 258 FFTVYGPWGRPDMAYFF--FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315
F +GP + F ++G+ +TVY G+ R F Y+ D+V G +A ++
Sbjct: 171 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYG--SGSQT-RAFQYVSDLVNGLVALMN 227
Query: 316 TAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQ 375
+ S NLGN + L++ ++ +E + L D Q
Sbjct: 228 SNVSS--------------PVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLS-EAQDDPQ 272
Query: 376 FTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
+I A+ LG+ P LE GL K + ++
Sbjct: 273 KRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 308
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 228 bits (581), Expect = 2e-72
Identities = 80/334 (23%), Positives = 133/334 (39%), Gaps = 23/334 (6%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKAR---KGLLERAGVFVIDA 138
+LVTG AGF+GSH L + D + R + + +
Sbjct: 3 LLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHG 62
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
DI D L + ++H AA++ V ++ + + E+N+ G LL+ +
Sbjct: 63 DIRDAGL--LARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 199 PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRF 258
+V S++ VYG ++E + P S YAA+K + +A AY+ YGL + R
Sbjct: 121 R-VVHVSTNQVYGSIDSGSWTESSPLE-PNSPYAASKAGSDLVARAYHRTYGLDVRITRC 178
Query: 259 FTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318
YGP+ P+ F +++ G + +Y DGA+V R++ + DD +G L +
Sbjct: 179 CNNYGPYQHPEKLIPLFVTNLLDGGTLPLYG--DGANV-REWVHTDDHCRGIALVLAGGR 235
Query: 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTH 378
I+++G + L +L L + R G
Sbjct: 236 AG-------------EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYS 282
Query: 379 ANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412
+ +RELGY P GL + VRWY
Sbjct: 283 LDGGKIERELGYRPQVSFADGLARTVRWYRENRG 316
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 222 bits (567), Expect = 4e-70
Identities = 83/343 (24%), Positives = 139/343 (40%), Gaps = 23/343 (6%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
VLVTG +G++GSH + L + G V+ LDN N + L + L ++ DI
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER--LGGKHPTFVEGDIR 60
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
+++L+ +I + A V+H A V ++Q P Y ++N+ G + L+ ++++ +
Sbjct: 61 NEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NF 119
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSITGLRFFT 260
+++SS++VYG K+P+ E T P S Y +K E I SI LR+F
Sbjct: 120 IFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFN 179
Query: 261 VYGPWGRPDMAY-----------FFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKG 309
G DM + + R + ++ D T + D +
Sbjct: 180 PVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDY---PTEDGTGVRDYIH- 235
Query: 310 CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP 369
+D A + K I+NLG V +V+ K P
Sbjct: 236 ---VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR- 291
Query: 370 RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412
R GD+ A+ S A REL + T L+ + W +
Sbjct: 292 REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ 334
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 217 bits (553), Expect = 5e-68
Identities = 95/339 (28%), Positives = 155/339 (45%), Gaps = 24/339 (7%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
L+TG AGF+GS++ L K V+GLDNF ++ +L + R + E+
Sbjct: 18 VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQG 77
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
+ ++L D +V+H AA V ++ +P + +NI GF+N+L + + Q
Sbjct: 78 DIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQS- 136
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
+A+SSS YG + +P E P S YA TK E A ++ YG S GLR+F
Sbjct: 137 FTYAASSSTYGDHPGLPKVEDTIGK-PLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFN 195
Query: 261 VYGPWGRPDMAYFF----FTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316
V+G P+ AY +T +I+G + + DG +RDF YI++ V+ L
Sbjct: 196 VFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN--GDG-ETSRDFCYIENTVQANLLAA-- 250
Query: 317 AKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL----PRNG 372
A +++N+ +++L L L + R G
Sbjct: 251 ---------TAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREG 301
Query: 373 DVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
DV+ + A+IS A + LGY P D+ G+ + WY+ +
Sbjct: 302 DVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMFL 340
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 216 bits (552), Expect = 1e-67
Identities = 73/354 (20%), Positives = 121/354 (34%), Gaps = 26/354 (7%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKK--ARKGLLERAGVFVIDA 138
L+TG G GS+++ L ++G V G+ + + T + +
Sbjct: 3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYG 62
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D++D S L +I V V +L A + V + ++P + + G + LLE + +
Sbjct: 63 DLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLE 122
Query: 199 PA--IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGL 256
AS+S +YG+ +++P E P S YA K I Y YG+
Sbjct: 123 KKTRFYQASTSELYGLVQEIPQKETTPFY-PRSPYAVAKLYAYWITVNYRESYGMYACNG 181
Query: 257 RFFTVYGPWGRPDMAYFFFTRDII---RGKRITVYEAPDGASVARDFTYIDDIVKGCLAG 313
F P TR I +G +Y RD+ + D VK
Sbjct: 182 ILFNHESPRRGETFVTRKITRAIANIAQGLESCLY--LGNMDSLRDWGHAKDYVKMQWMM 239
Query: 314 LDTAKK-----STGSGGKKKGPAEFRIFNLGNTTP----------VPVSRLVSLLEKILK 358
L + +TG + E LG + VS +
Sbjct: 240 LQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKP 299
Query: 359 VKAETKVLP-LPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
V P R +V+ + + A +LG+ P L + + V L
Sbjct: 300 GDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAA 353
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 202 bits (514), Expect = 3e-62
Identities = 82/344 (23%), Positives = 131/344 (38%), Gaps = 23/344 (6%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
VLVTG AG++GSH + L + G + DN +N S+ + L + + + D+
Sbjct: 3 IVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEV--LTKHHIPFYEVDL 60
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D+ L+K+F V+H A V + Q P Y +NI G V LLE + +
Sbjct: 61 CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSK- 119
Query: 201 IVWASSSSVYGVNKKVPFSEK---DRTDQPASLYAATKKAGEAIAHAYN--HIYGLSITG 255
V++SS++VYG + P + P + Y TK A E I +
Sbjct: 120 FVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAI 179
Query: 256 LRFFTVY----------GPWGRPDMAYFFFTRDII-RGKRITVYEAPDGASVARDFTYID 304
LR+F P G P+ + + + R +++ ++ +RD T I
Sbjct: 180 LRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDY---DSRDGTPIR 236
Query: 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETK 364
D + + R +NLG+ V + K + K
Sbjct: 237 DYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYK 296
Query: 365 VLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYL 408
V R GDV A A+REL + +E K +W
Sbjct: 297 VTG-RRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTT 339
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 202 bits (514), Expect = 4e-62
Identities = 63/342 (18%), Positives = 121/342 (35%), Gaps = 13/342 (3%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLER---AGVFVIDA 138
L+TG G GS+++ L ++G V G+ ++ + T + + + +
Sbjct: 4 ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYG 63
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
D+ D + L KI N V T + +L AQ+ V+ + + + G + LL+ K+
Sbjct: 64 DLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLI 123
Query: 199 PA--IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGL 256
+ AS+S +YG +++P E P S Y A K I + Y L
Sbjct: 124 NSVKFYQASTSELYGKVQEIPQKETTPFY-PRSPYGAAKLYAYWIVVNFREAYNLFAVNG 182
Query: 257 RFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA-SVARDFTYIDDIVKGCLAGLD 315
F P + +R + + + G RD+ + D V+ L
Sbjct: 183 ILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQ 242
Query: 316 TAKKSTGSGGKK-----KGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP- 369
+ + E ++G T + K V
Sbjct: 243 NDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYY 302
Query: 370 RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
R +V F + + A+++L + P + +++ V +
Sbjct: 303 RPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELM 344
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 189 bits (481), Expect = 1e-57
Identities = 63/339 (18%), Positives = 115/339 (33%), Gaps = 43/339 (12%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
V + G G VGS + L++RGD L L + ++
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDEL-----------------------NLL 41
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYA-MQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D + F V AA+ G A P ++ N+ N++ +D
Sbjct: 42 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNK- 100
Query: 201 IVWASSSSVYGVNKKVPFSEKDRT----DQPASLYAATKKAGEAIAHAYNHIYGLSITGL 256
+++ SS +Y K P +E + + YA K AG + +YN YG +
Sbjct: 101 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 160
Query: 257 RFFTVYGPWGRPDMAYFFFTRDIIRG-------KRITVYEAPDGASVARDFTYIDDIVKG 309
+YGP + ++R K V G + R+F ++DD+
Sbjct: 161 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPM-REFLHVDDMAAA 219
Query: 310 CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP 369
+ ++ A + + N+G + L + K++ K
Sbjct: 220 SIHVMELAHEVW----LENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDA-S 274
Query: 370 RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYL 408
+ +++ +LG+ LE GL +W+L
Sbjct: 275 KPDGTPRKLLDVTRL-HQLGWYHEISLEAGLASTYQWFL 312
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 187 bits (476), Expect = 1e-56
Identities = 102/355 (28%), Positives = 157/355 (44%), Gaps = 36/355 (10%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKK----ARKGLLERAGVFVID 137
VLVTG AG++GSH L L + G + +DNF+N + R L V +
Sbjct: 5 VLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEE 64
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
DI D+ L ++F +F V+H A V ++Q P Y N+ G + LLE K+
Sbjct: 65 MDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGV 124
Query: 198 QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSITGL 256
+ +V++SS++VYG + +P E T + Y +K E + + L
Sbjct: 125 KN-LVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLL 183
Query: 257 RFFTVYGP----------WGRPDMAYFFFTRDII-RGKRITVYEAP----DGASVARDFT 301
R+F G G P+ + ++ I R + + V+ DG V RD+
Sbjct: 184 RYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGV-RDYI 242
Query: 302 YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKA 361
++ D+ KG +A L K+ G RI+NLG T V ++V +EK K
Sbjct: 243 HVVDLAKGHIAALRKLKEQCG----------CRIYNLGTGTGYSVLQMVQAMEKASGKKI 292
Query: 362 ETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYL---SYYNS 413
KV+ R GDV +AN SLAQ ELG+ L+ + RW S + +
Sbjct: 293 PYKVVA-RREGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFGT 346
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 184 bits (467), Expect = 1e-55
Identities = 67/338 (19%), Positives = 117/338 (34%), Gaps = 26/338 (7%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+ LVTG G G++++ L ++G V GL + + L + D D+
Sbjct: 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRE---LGIEGDIQYEDGDM 58
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D + + V +LAAQ+ V + P + + G +LLE + P+
Sbjct: 59 ADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETR 118
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
AS+S ++G+ + E S Y K G I Y +GL + F
Sbjct: 119 FYQASTSEMFGLIQAERQDENTPFYP-RSPYGVAKLYGHWITVNYRESFGLHASSGILFN 177
Query: 261 VYGPWGRPDMAYFFFTRDIIR---GKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317
P + T + R GK+ + RD+ + D V+ L
Sbjct: 178 HESPLRGIEFVTRKVTDAVARIKLGKQQELR--LGNVDAKRDWGFAGDYVEAMWLMLQQD 235
Query: 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP---RNGDV 374
K + + V + + + + + + P R +V
Sbjct: 236 K--------------ADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEV 281
Query: 375 QFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412
N + AQR LG+ P T L+ ++ V L +
Sbjct: 282 DVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVS 319
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 183 bits (464), Expect = 9e-55
Identities = 72/347 (20%), Positives = 131/347 (37%), Gaps = 40/347 (11%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDG--VLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
++VTG AGF+GS+ + V LD KA + V ++
Sbjct: 4 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG----NKANLEAILGDRVELVVG 59
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ 198
DI D L+DK+ ++H AA++ ++ +P+ ++ +N G LLE + D +
Sbjct: 60 DIADAELVDKLAAK--ADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIR 117
Query: 199 PAIVWASSSSVYG------------VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYN 246
S+ VYG F+ + + P+S Y++TK A + I A+
Sbjct: 118 F--HHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN-PSSPYSSTKAASDLIVKAWV 174
Query: 247 HIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDI 306
+G+ T YGP+ + +I+ G + +Y RD+ + +D
Sbjct: 175 RSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYGEGK---NVRDWIHTNDH 231
Query: 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVL 366
G A L + G + ++ L+ + + +
Sbjct: 232 STGVWAILTKGRMGETYLIGADGEKNNK-------------EVLELILEKMGQPKDAYDH 278
Query: 367 PLPRNGDVQFTHANISLAQRELGYMPT-TDLETGLKKFVRWYLSYYN 412
R G + S + ELG+ P TD GL++ ++WY +
Sbjct: 279 VTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQD 325
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 180 bits (456), Expect = 1e-53
Identities = 77/340 (22%), Positives = 120/340 (35%), Gaps = 23/340 (6%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKK---ARKGLLERAGVFVID 137
L+TG G GS+++ L +G V GL ++ + T + +A + +
Sbjct: 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHY 62
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
AD+ D S L + +V+ V +LAAQ+ V + + P+ + G + LLE +S
Sbjct: 63 ADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTI 122
Query: 198 QPAIVW---ASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSIT 254
+ SS + P SE P S YAA+K A Y YGL
Sbjct: 123 DSGRTVKYYQAGSSEMFGSTPPPQSETTPFH-PRSPYAASKCAAHWYTVNYREAYGLFAC 181
Query: 255 GLRFFTVYGPWGRPDMAYFFFTRD---IIRGKRITVYEAPDGASVARDFTYIDDIVKGCL 311
F P + TR I G + ++ AS RD+ + D V+
Sbjct: 182 NGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFLGNLQAS--RDWGFAGDYVEAMW 239
Query: 312 AGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN 371
L ++K G+T + L K E R
Sbjct: 240 LMLQ----------QEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYF-RP 288
Query: 372 GDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411
+V + S A+ LG+ P E +K V L
Sbjct: 289 AEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELA 328
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 178 bits (452), Expect = 8e-53
Identities = 67/340 (19%), Positives = 125/340 (36%), Gaps = 37/340 (10%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+ +TGA GF+ SH++ LK G V+ D N + T + D+
Sbjct: 18 ISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE---------FHLVDLR 68
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
K+ V + A G+ + N + + +N N++E + +
Sbjct: 69 VMENCLKVTEGVDHVFNLA-ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGI-KRF 126
Query: 202 VWASSSSVYGVNKKV------PFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITG 255
+ASS+ +Y K++ +P + K A E + YN +G+
Sbjct: 127 FYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRI 186
Query: 256 LRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAP---DGASVARDFTYIDDIVKGCLA 312
RF +YGP+G R + + DG R FT+ID+ V+G L
Sbjct: 187 GRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQT-RSFTFIDECVEGVLR 245
Query: 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNG 372
+ + N+G+ V ++ + ++ + K +P P
Sbjct: 246 LTKSDFR--------------EPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP--E 289
Query: 373 DVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412
V+ +++ +L + +LG+ P L+ GL+ W
Sbjct: 290 GVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIE 329
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 173 bits (438), Expect = 4e-51
Identities = 68/349 (19%), Positives = 125/349 (35%), Gaps = 39/349 (11%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+TG GF+GS+++ +G ++ DN + L + DI
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSR---KGATDNLHWLSSLGNFEFVHGDIR 59
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
+K+ + ++ HLA Q + ++ NP E N+ G +NLLE + + I
Sbjct: 60 NKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNI 119
Query: 202 VWASSSSVYGVNKKVPFSEKDRTD---------------QPASLYAATKKAGEAIAHAYN 246
+++S++ VYG ++ ++E + S Y +K A + Y
Sbjct: 120 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYA 179
Query: 247 HIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDII--------RGKRITVYEAPDGASVAR 298
I+GL+ R ++YG + K T+ +G V R
Sbjct: 180 RIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISG--NGKQV-R 236
Query: 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILK 358
D + +D++ L K G + + L LLE
Sbjct: 237 DVLHAEDMISLYFTALANVSKIRG---------NAFNIGGTIVNSLSLLELFKLLEDYCN 287
Query: 359 VKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWY 407
+ LP+ R D + A+I + + P + G++K W
Sbjct: 288 IDMRFTNLPV-RESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWT 335
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 158 bits (399), Expect = 6e-45
Identities = 64/382 (16%), Positives = 120/382 (31%), Gaps = 57/382 (14%)
Query: 82 VLVTGAAGFVGSHVSLAL-KKRGDGVLGLDNFNNYYETSLKKARKGLLERA--------- 131
VLV G AG++GSH AL + V+ +D+ + S + + R
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64
Query: 132 -----GVFVIDADINDKSLLDKI------FNVVAFTHVMHLAAQAGVRYAMQNPNSYVES 180
+ D+ ++ L+ + + V ++ N+ V
Sbjct: 65 PWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGI 124
Query: 181 NIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEA 240
LL C + + ++ V+ + + P S Y +K E
Sbjct: 125 LRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAER 184
Query: 241 IAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFF-------------------------F 275
+ YG+ LR+F G D+ +
Sbjct: 185 MIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQRLTI 244
Query: 276 TRDIIRGKRITVY----EAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPA 331
D KR+ ++ PDG + RD+ ++ D+ + A G
Sbjct: 245 HEDASTDKRMPIFGTDYPTPDG-TCVRDYVHVCDLASAHIL----ALDYVEKLGPNDKSK 299
Query: 332 EFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYM 391
F +FNLG + V ++ + K + R GD + A A+ LG+
Sbjct: 300 YFSVFNLGTSRGYSVREVIEVARKTTGHPIPVRECG-RREGDPAYLVAASDKAREVLGWK 358
Query: 392 PTTDLETGLKK-FVRWYLSYYN 412
P D + + ++ ++ N
Sbjct: 359 PKYDTLEAIMETSWKFQRTHPN 380
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 139 bits (350), Expect = 3e-38
Identities = 68/348 (19%), Positives = 117/348 (33%), Gaps = 22/348 (6%)
Query: 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVID 137
+G V VTG GF G +SL L+ G V G + + AR G+
Sbjct: 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV----ADGMQSEI 62
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
DI D++ L + V H+AAQ VR + P +N+ G V LLE +
Sbjct: 63 GDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGG 122
Query: 198 QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNH---------I 248
A+V +S Y + + ++ Y+ +K E + +Y +
Sbjct: 123 VKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQ 182
Query: 249 YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVK 308
+G ++ +R V G + + P +
Sbjct: 183 HGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYL 242
Query: 309 GCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL 368
L T AE F + PV +V + K A ++
Sbjct: 243 LLAQKLYT---------DGAEYAEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGN 293
Query: 369 PRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNSASA 416
+ + + S A+ +LG+ P +L T L+ V W+ ++ +
Sbjct: 294 AHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSGTDM 341
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 114 bits (284), Expect = 9e-29
Identities = 61/370 (16%), Positives = 109/370 (29%), Gaps = 37/370 (10%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKK--------------AR 124
G V+V G G+ G +L L K+ V +DN +R
Sbjct: 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60
Query: 125 KGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAAQA---GVRYAMQNPNSYVESN 181
L + + DI D L + F V+H Q +N
Sbjct: 61 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 120
Query: 182 IAGFVNLLETCKSSDPQPAIVWASSSS------------VYGVNKKVPFSEKDRTDQPAS 229
+ G +N+L K + +V + + Q +S
Sbjct: 121 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 180
Query: 230 LYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGP----WGRPDMAYFFFTRDIIRGKRI 285
Y +K +G+ T L VYG + D + G +
Sbjct: 181 FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240
Query: 286 TVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGN--TTP 343
+ +G L DT + + EFR+FN +
Sbjct: 241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSV 300
Query: 344 VPVSRLVSLLEKILKVKAETKVLPLPRN-GDVQFTHANISLAQRELGYMPTTDLETGLKK 402
++ LV+ L + + +P PR + + +A + ELG P ++ L
Sbjct: 301 NELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL-MELGLEPHYLSDSLLDS 359
Query: 403 FVRWYLSYYN 412
+ + + + +
Sbjct: 360 LLNFAVQFKD 369
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 112 bits (279), Expect = 2e-28
Identities = 53/357 (14%), Positives = 101/357 (28%), Gaps = 46/357 (12%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
VL+ G GF+G+H++ L + V GLD ++ L ++ DI
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPH--------FHFVEGDI 54
Query: 141 NDKSLLDKIFN---VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP 197
+ S + V V R ++ E N+ ++ K
Sbjct: 55 SIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIF 114
Query: 198 QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSIT--- 254
S ++ ++P +Y+ +K+ + + AY GL T
Sbjct: 115 PSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFR 174
Query: 255 -----GLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKG 309
G R + A +++ G I + G D I
Sbjct: 175 PFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI--DGGKQKRCFTDIRDGIEAL 232
Query: 310 CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL- 368
+ + G I + L +L + P
Sbjct: 233 YRIIENAGNRCDG----------EIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPF 282
Query: 369 -------------PRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412
DV+ +I A R L + P D++ + + + ++L +
Sbjct: 283 AGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 339
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 100 bits (248), Expect = 2e-24
Identities = 50/330 (15%), Positives = 97/330 (29%), Gaps = 29/330 (8%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
++VTG AGF+GS++ AL +G +L +DN + + I +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLN----------IADYM 51
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
+ + L +I F V + + + Y+ N + L P
Sbjct: 52 DKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPF 111
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
+ +S+++ G S + Y+ +
Sbjct: 112 LYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 171
Query: 261 VYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKS 320
+ MA F + + + RDF Y+ D+
Sbjct: 172 GPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVN---------- 221
Query: 321 TGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP---RNGDVQFT 377
IFNLG + K K + + +P P + FT
Sbjct: 222 ----LWFLENGVSGIFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRYQAFT 276
Query: 378 HANISLAQRELGYMPTTDLETGLKKFVRWY 407
A+++ + P + G+ +++ W
Sbjct: 277 QADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 98.7 bits (244), Expect = 1e-23
Identities = 54/357 (15%), Positives = 95/357 (26%), Gaps = 41/357 (11%)
Query: 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGV 133
G VLVTGA GFV SHV L + G V G + +L+K
Sbjct: 6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLA-NLQKRWDAKYPGRFE 64
Query: 134 FVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCK 193
+ D+ + D++ A + +Y + G +N L
Sbjct: 65 TAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIG-----GTLNALRAAA 119
Query: 194 SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ-------------------PASLYAAT 234
++ V SS+ + K +YAA+
Sbjct: 120 ATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAAS 179
Query: 235 KKAGEAIA--HAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPD 292
K E A + ++ + G P+ + ++ V A
Sbjct: 180 KTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALA 239
Query: 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSL 352
+ +D + + P R G + +++
Sbjct: 240 LMPPQYYVSAVDIGLLHLGCLVL--------------PQIERRRVYGTAGTFDWNTVLAT 285
Query: 353 LEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409
K+ K P +F A + LG +E +K V +
Sbjct: 286 FRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSETA 342
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 77.9 bits (190), Expect = 6e-17
Identities = 43/282 (15%), Positives = 78/282 (27%), Gaps = 40/282 (14%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
TVLVTGA+G G V LK+ D + + + ++ + A VF+ D
Sbjct: 5 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS------AQGKEKIGGEADVFIGDITD 58
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D ++ L + +P Q
Sbjct: 59 AD----SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKN 114
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIA-HAYNHIYGLSITGLRFF 259
+ A+ + V D P + Y G T +R
Sbjct: 115 QIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAG 174
Query: 260 TVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319
+ G R+++ GK + + D+ + C+ L +
Sbjct: 175 GLLDKEGG--------VRELLVGKDDELLQTDTK------TVPRADVAEVCIQALLFEE- 219
Query: 320 STGSGGKKKGPAEFRIFNLGN---TTPVPVSRLVSLLEKILK 358
A+ + F+LG+ T P +L ++
Sbjct: 220 -----------AKNKAFDLGSKPEGTSTPTKDFKALFSQVTS 250
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 77.2 bits (188), Expect = 2e-16
Identities = 45/326 (13%), Positives = 86/326 (26%), Gaps = 50/326 (15%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+TGA G +G + LK + V+ D + DI
Sbjct: 4 ILITGANGQLGREIQKQLKGKNVEVIPTDVQD------------------------LDIT 39
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
+ ++K FN V++ AA V + + + N G N + I
Sbjct: 40 NVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKN--LAAAAYSVGAEI 97
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
V S+ V+ K P +E D + ++ + +R +
Sbjct: 98 VQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKL-----EGENFVKALNPKYYIVRTAWL 152
Query: 262 YGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKST 321
YG + + V D +
Sbjct: 153 YGDGNNFVKTMINLGK---THDELKVVH---------DQVGTPTSTVDLARVVLKVIDEK 200
Query: 322 GSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANI 381
G + + RL + K+ E P R +
Sbjct: 201 NYGTFHCTCKGICSWYDFAVE---IFRLTGIDVKVTPCTTEEFPRPAKRPKY---SVLRN 254
Query: 382 SLAQRELGYMPTTDLETGLKKFVRWY 407
+ + G + + + LK+++
Sbjct: 255 YMLELTTGDIT-REWKESLKEYIDLL 279
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 76.0 bits (185), Expect = 5e-16
Identities = 45/349 (12%), Positives = 90/349 (25%), Gaps = 73/349 (20%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+ GA G++G HV+ A G L + S K + +G ++ I+
Sbjct: 6 ILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSID 65
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D + L + V+ + + + E
Sbjct: 66 DHASLVEAVKN--VDVVISTVGSLQIESQVNIIKAIKEVG-------------------T 104
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
V S +G + + + G+ T +
Sbjct: 105 VKRFFPSEFGNDVDNVHAVEPAKSVFEVKA---------KVRRAIEAEGIPYTYVSSNCF 155
Query: 262 YGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKST 321
G + R + F +DI + +D +
Sbjct: 156 AGYFLRSLAQAGLTA------PPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLN 209
Query: 322 GSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP------------LP 369
+ ++ + ++ LV+L EK + E +P P
Sbjct: 210 KT-----------LYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTPFP 258
Query: 370 RNGDVQFTHANI---SLAQRELGY-----------MPTTDLETGLKKFV 404
N + +H+ E+G + T ++ L FV
Sbjct: 259 ANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDVKYTTVDEYLSNFV 307
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 75.0 bits (182), Expect = 1e-15
Identities = 44/328 (13%), Positives = 95/328 (28%), Gaps = 35/328 (10%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
+L+ G G VG + +L G+ ++ LD + + D +
Sbjct: 3 ILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKEFC--------------------GDFS 41
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
+ + + + +++ AA V A P N +++ +
Sbjct: 42 NPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNA--TSVEAIAKAANETGAWV 99
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
V S+ V+ +P+ E D P ++Y TK AGE + + T +
Sbjct: 100 VHYSTDYVFPGTGDIPWQETDA-TSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGK 158
Query: 262 YGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKST 321
+ + + + + D L+ + +
Sbjct: 159 GNNFAKTMLRLAKERQTLSVINDQYGAP-------TGAELLADCTAHAIRVALNKPEVAG 211
Query: 322 GSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANI 381
G + + + + L ++ V P R G+ + N
Sbjct: 212 LYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRL---NT 268
Query: 382 SLAQRELGYMPTTDLETGLKKFVRWYLS 409
QR + E G+K+ + +
Sbjct: 269 EKFQRNFDLIL-PQWELGVKRMLTEMFT 295
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 71.7 bits (174), Expect = 1e-14
Identities = 32/350 (9%), Positives = 82/350 (23%), Gaps = 70/350 (20%)
Query: 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN 141
VL+ G G++G + A G L K ++ G +I+A ++
Sbjct: 6 VLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNID-KVQMLLYFKQLGAKLIEASLD 64
Query: 142 DKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAI 201
D L V + +I + L+E K +
Sbjct: 65 DHQRLVDALKQVDVVISAL-------------AGGVLSHHILEQLKLVEAIKEAGNIKRF 111
Query: 202 VWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTV 261
+ S +G++ + + + T +
Sbjct: 112 L----PSEFGMDPDIMEHALQPGSI--------TFIDKRKVRRAIEAASIPYTYVSSNMF 159
Query: 262 YGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKST 321
G + I + DD+ + +D +
Sbjct: 160 AGYFAGSLAQLDGHMMPPRDKVLIYGDGNVK-----GIWVDEDDVGTYTIKSIDDPQTLN 214
Query: 322 GSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP------------LP 369
+ ++ + ++ + E++ + + +
Sbjct: 215 KT-----------MYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQDFLADMKDKSYE 263
Query: 370 RNGDVQFTH--------ANISLAQREL-------GYMPTTDLETGLKKFV 404
+ N + + T +++ L+++V
Sbjct: 264 EKIVRCHLYQIFFRGDLYNFEIGPNAIEATKLYPEVKYVT-MDSYLERYV 312
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 55.4 bits (132), Expect = 4e-09
Identities = 37/290 (12%), Positives = 68/290 (23%), Gaps = 51/290 (17%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
T+ V GA G G+ + G V + + + L V + +
Sbjct: 5 TIAVVGATGRQGASLIRVAAAVGHHVRAQVH------SLKGLIAEELQAIPNVTLFQGPL 58
Query: 141 -NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP 199
N+ L+D +F + S IA +L + K +
Sbjct: 59 LNNVPLMDTLFEGAHLAFINT--------------TSQAGDEIAIGKDLADAAKRA---- 100
Query: 200 AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFF 259
G + +S A A + Y GL T +
Sbjct: 101 -----------GTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAG 149
Query: 260 TVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY-IDDIVKGCLAGLDTAK 318
+ F PD D + + + D +
Sbjct: 150 IYNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIF--KDGPQ 207
Query: 319 KSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL 368
K G L + ++ + + L + +P
Sbjct: 208 KWNG-----------HRIALT-FETLSPVQVCAAFSRALNRRVTYVQVPK 245
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 1e-07
Identities = 38/216 (17%), Positives = 69/216 (31%), Gaps = 28/216 (12%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
+ + GA G G + G V L ++ + V+ D+
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE---------GPRPAHVVVGDV 55
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
+ +DK V+ L N S G N++ K+
Sbjct: 56 LQAADVDKTVA--GQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDK- 105
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG-EAIAHAYNHIYGLSITGLRFF 259
+V +S+ + KVP + TD ++ +++G + +A HI +TG
Sbjct: 106 VVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYTV 165
Query: 260 TVYGPWG-----RPDMAYFFF---TRDIIRGKRITV 287
T+ G + D+ +F T D G
Sbjct: 166 TLDGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYP 201
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 43.9 bits (103), Expect = 2e-05
Identities = 33/251 (13%), Positives = 70/251 (27%), Gaps = 10/251 (3%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
G +V++TG++ +G ++ K G V + E + ++ K + + + A
Sbjct: 4 GKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVA 63
Query: 139 DINDKSLLDKIFNVV--AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLET-CKSS 195
D+ + S D I N F + L A + + + + + + + ++
Sbjct: 64 DVTEASGQDDIINTTLAKFGKIDILVNNA--GANLADGTANTDQPVELYQKTFKLNFQAV 121
Query: 196 DPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPA-SLYAATKKAGEAIAHAYNHIYGLSIT 254
G V YA K A +
Sbjct: 122 IEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQYTRCTAIDLIQ--H 179
Query: 255 GLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC--LA 312
G+R +V + K + + ++I LA
Sbjct: 180 GVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLA 239
Query: 313 GLDTAKKSTGS 323
+ + G
Sbjct: 240 DRNLSSYIIGQ 250
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 42.7 bits (100), Expect = 4e-05
Identities = 40/255 (15%), Positives = 71/255 (27%), Gaps = 16/255 (6%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
TV++TG++ +G ++ + G V + E + + K + V + A
Sbjct: 5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVA 64
Query: 139 DINDKSLLDKIFNVV--AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD 196
D+ + D+I N F + L AG + + I + L+ +
Sbjct: 65 DVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQA- 123
Query: 197 PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSI--- 253
V + V + + A A AIA A Y S
Sbjct: 124 -----VIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRSTAID 178
Query: 254 ---TGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310
G+R +V D K + + I
Sbjct: 179 LAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANII 238
Query: 311 --LAGLDTAKKSTGS 323
LA + + G
Sbjct: 239 LFLADRNLSFYILGQ 253
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 41.5 bits (97), Expect = 8e-05
Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 13/214 (6%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
G ++TG +G ++ + G V+ + +KA K + +
Sbjct: 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGR----HSDVGEKAAKSVGTPDQIQFFQH 61
Query: 139 DINDKSLLDKIFNVV--AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD 196
D +D+ K+F+ AF V L AG+ S E+ A + LL
Sbjct: 62 DSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAV----NKSVEETTTAEWRKLLAVNLDGV 117
Query: 197 P---QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSI 253
+ I + + + E D Y A+K A ++ + L
Sbjct: 118 FFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKD 177
Query: 254 TGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITV 287
+R TV+ + + + + +R
Sbjct: 178 YDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKT 211
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (97), Expect = 9e-05
Identities = 37/225 (16%), Positives = 74/225 (32%), Gaps = 33/225 (14%)
Query: 73 RPRSTR--GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLER 130
RP R LVTGA+G +G+ V+ AL ++G V+G ++++
Sbjct: 2 RPGMERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCAR----TVGNIEELAAECKSA 57
Query: 131 AG---VFVIDADINDKSLLDKIFNVV--AFTHVMHLAAQAGV-------RYAMQNPNSYV 178
+ D++++ + +F+ + + V AG+ +
Sbjct: 58 GYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMF 117
Query: 179 ESNIAGFVNLLETC-----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAA 233
N+ + + I+ +S S + V +P Y+A
Sbjct: 118 NVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV---LPL-------SVTHFYSA 167
Query: 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRD 278
TK A A+ + T +R + A+ +D
Sbjct: 168 TKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKD 212
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.5 bits (97), Expect = 1e-04
Identities = 37/259 (14%), Positives = 70/259 (27%), Gaps = 18/259 (6%)
Query: 77 TR--GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVF 134
TR ++TG++ +G ++ + G V E + ++ + V
Sbjct: 1 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVN 60
Query: 135 VIDADINDKSLLDKIFNVV--AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGF-----VN 187
+ AD+ + D+I + F + L AG + +I + +N
Sbjct: 61 SVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLN 120
Query: 188 LLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP-ASLYAATKKAGEAIAHAYN 246
L + SS G + P Y+ K A +
Sbjct: 121 LRSVIALT----KKAVPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTA 176
Query: 247 HIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDI 306
G+R ++ + K + A DI
Sbjct: 177 IDLIQ--HGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDI 234
Query: 307 VKGC--LAGLDTAKKSTGS 323
+ LA T+ G
Sbjct: 235 AEVIAFLADRKTSSYIIGH 253
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (96), Expect = 1e-04
Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
G LVTGAA +G + AL +G V +D +N K A E I
Sbjct: 3 GKVALVTGAAQGIGRAFAEALLLKGAKVALVD-WNLEAGVQCKAALHEQFEPQKTLFIQC 61
Query: 139 DINDKSLLDKIFNVVA--FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNL 188
D+ D+ L F V F + L AGV +N ++ N+ ++
Sbjct: 62 DVADQQQLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISG 112
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 3e-04
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGV 106
+V + GA+G G + + ++G
Sbjct: 16 SVFILGASGETGRVLLKEILEQGLFS 41
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.6 bits (92), Expect = 4e-04
Identities = 41/194 (21%), Positives = 58/194 (29%), Gaps = 14/194 (7%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
GL LVTGA +G AL G V+ + + E G+ +
Sbjct: 5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTR-------TNSDLVSLAKECPGIEPVCV 57
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGF-VNLLETCKSSDP 197
D+ D +K V L A + E+ F VNL + S
Sbjct: 58 DLGDWDATEKALG--GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVS-- 113
Query: 198 QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLR 257
Q + V G V T Y++TK A + A G +R
Sbjct: 114 QMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMAMELG--PHKIR 171
Query: 258 FFTVYGPWGRPDMA 271
+V DM
Sbjct: 172 VNSVNPTVVLTDMG 185
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.4 bits (90), Expect = 4e-04
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGV 106
VL+ GA G G H+ +
Sbjct: 4 RVLLAGATGLTGEHLLDRILSEPTLA 29
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (90), Expect = 6e-04
Identities = 34/193 (17%), Positives = 55/193 (28%), Gaps = 10/193 (5%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
G LVTGA+ +G ++ L RG V+G E + L +++
Sbjct: 4 GKIALVTGASRGIGRAIAETLAARGAKVIGTAT----SENGAQAISDYLGANGKGLMLNV 59
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAM-QNPNSYVESNIAGFVNLLETCKSSDP 197
F V L AG+ E N NL +
Sbjct: 60 TDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFR---L 116
Query: 198 QPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLR 257
A++ A +G + + + YAA K + + G+
Sbjct: 117 SKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFSKSLAREVA--SRGIT 174
Query: 258 FFTVYGPWGRPDM 270
V + DM
Sbjct: 175 VNVVAPGFIETDM 187
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 38.6 bits (89), Expect = 0.001
Identities = 24/167 (14%), Positives = 49/167 (29%), Gaps = 6/167 (3%)
Query: 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG- 132
P S +G +TG +G ++ L G + LK + + + G
Sbjct: 20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASR----KMDVLKATAEQISSQTGN 75
Query: 133 -VFVIDADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLET 191
V I D+ D ++ + + +P + N + +
Sbjct: 76 KVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVL 135
Query: 192 CKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAG 238
++ I + G + T + +A+ KAG
Sbjct: 136 NGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAG 182
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Score = 38.5 bits (88), Expect = 0.001
Identities = 27/191 (14%), Positives = 46/191 (24%), Gaps = 9/191 (4%)
Query: 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI 140
TVLVTG G VG ++ L +RG L L + + + L A
Sbjct: 11 TVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAEL--EALGARTTVAA 68
Query: 141 NDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPA 200
D + + + ++ + A + +
Sbjct: 69 CDVTDRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLH 128
Query: 201 IVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFT 260
+ V S YA + +A +
Sbjct: 129 ELTRELDLTAFVLFSSFASAFGAPGLGG--YAPGNAYLDGLAQQRRSDGLPATA-----V 181
Query: 261 VYGPWGRPDMA 271
+G W MA
Sbjct: 182 AWGTWAGSGMA 192
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (86), Expect = 0.002
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 2/81 (2%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG--VFVI 136
G +VTG A +G + L + G V+ +++ + + L V I
Sbjct: 12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPI 71
Query: 137 DADINDKSLLDKIFNVVAFTH 157
+I ++ ++ + T
Sbjct: 72 QCNIRNEEEVNNLVKSTLDTF 92
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 36.2 bits (83), Expect = 0.002
Identities = 22/126 (17%), Positives = 33/126 (26%), Gaps = 3/126 (2%)
Query: 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVID 137
+ V VTGAAG +G + + +LG D + +A K L
Sbjct: 3 APVRVAVTGAAGQIGYSLLFRIAAG--EMLGKDQPVILQLLEIPQAMKALEGVVMELEDC 60
Query: 138 ADINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAM-QNPNSYVESNIAGFVNLLETCKSSD 196
A L VAF + ++ N F
Sbjct: 61 AFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVA 120
Query: 197 PQPAIV 202
+ V
Sbjct: 121 KKDVKV 126
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 37.1 bits (86), Expect = 0.002
Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 29/176 (16%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
G VLVTG A +G ++ A + G V D L+ K + E G
Sbjct: 5 GKGVLVTGGARGIGRAIAQAFAREGALVALCD---------LRPEGKEVAEAIGGAFFQV 55
Query: 139 DINDKSLLDKIFNVV--AFTHVMHLAAQAGV-------RYAMQNPNSYVESNIAGFVNLL 189
D+ D+ + A V L A + + +E N+ ++L
Sbjct: 56 DLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLS 115
Query: 190 -ETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHA 244
+ + +SV G +Q + Y A+K + +
Sbjct: 116 ALAAREMRKVGGGAIVNVASVQG----------LFAEQENAAYNASKGGLVNLTRS 161
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (85), Expect = 0.003
Identities = 34/202 (16%), Positives = 58/202 (28%), Gaps = 30/202 (14%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
G VLVTGA +G AL G V+ + + + E G+ +
Sbjct: 7 GRRVLVTGAGKGIGRGTVQALHATGARVVAVS-------RTQADLDSLVRECPGIEPVCV 59
Query: 139 DINDKSLLDKIFNV-----VAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNL----L 189
D+ D ++ + + Q + + + E N+ + +
Sbjct: 60 DLGDWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVA 119
Query: 190 ETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY 249
+ AIV SS R S+Y +TK A + +
Sbjct: 120 RGLIARGVPGAIVNVSSQCSQ------------RAVTNHSVYCSTKGALDMLTKVMALEL 167
Query: 250 GLSITGLRFFTVYGPWGRPDMA 271
G +R V M
Sbjct: 168 G--PHKIRVNAVNPTVVMTSMG 187
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 36.6 bits (84), Expect = 0.003
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG-VFVID 137
G ++TGA +G +++ G V+ D + + + G F
Sbjct: 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSD----INADAANHVVDEIQQLGGQAFACR 66
Query: 138 ADINDKSLLDKIFNVV--AFTHVMHLAAQAGV 167
DI + L + + V L AG
Sbjct: 67 CDITSEQELSALADFAISKLGKVDILVNNAGG 98
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 36.6 bits (84), Expect = 0.003
Identities = 13/120 (10%), Positives = 37/120 (30%), Gaps = 15/120 (12%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
++TG AG +G + + G V+ D + +K + + +
Sbjct: 6 DKVAIITGGAGGIGETTAKLFVRYGAKVVIAD----IADDHGQKVCNNIGSPDVISFVHC 61
Query: 139 DINDKSLLDKIFN-----------VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVN 187
D+ + + + + V+ + + ++ ++ N+ G
Sbjct: 62 DVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFL 121
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 36.6 bits (84), Expect = 0.003
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG--VFVI 136
G LVTG + +G ++ L + G V+ +A + L E+ G
Sbjct: 5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASR----NLEEASEAAQKLTEKYGVETMAF 60
Query: 137 DADINDKSLLDKIFNVV--AFTHVMHLAAQAGV 167
D+++ + K+ V F + + AG+
Sbjct: 61 RCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI 93
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (84), Expect = 0.004
Identities = 33/207 (15%), Positives = 69/207 (33%), Gaps = 19/207 (9%)
Query: 73 RPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG 132
RP +G V+VTGA+ +G ++ L K G V+ + +L+K LE
Sbjct: 8 RPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTAR----SKETLQKVVSHCLELGA 63
Query: 133 --VFVIDADINDKSLLDKIFNVVA------FTHVMHLAAQAGVRYAMQNPNSYVESNIAG 184
I + D + ++ +++ + + + +S
Sbjct: 64 ASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVN 123
Query: 185 FVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHA 244
F++ + ++ P S V + KV + + Y+A+K A + +
Sbjct: 124 FLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPM-------VAAYSASKFALDGFFSS 176
Query: 245 YNHIYGLSITGLRFFTVYGPWGRPDMA 271
Y +S + + A
Sbjct: 177 IRKEYSVSRVNVSITLCVLGLIDTETA 203
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 36.6 bits (84), Expect = 0.004
Identities = 26/198 (13%), Positives = 53/198 (26%), Gaps = 20/198 (10%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
V+ A G +G S L KR + + + D
Sbjct: 5 NKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDV 64
Query: 139 DINDKSLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNL------LETC 192
+ + + + + + N G VN
Sbjct: 65 TVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDK 124
Query: 193 KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLS 252
+ P I S + + +VP +Y+A+K A + ++ +
Sbjct: 125 RKGGPGGIIANICSVTGFNAIHQVP------------VYSASKAAVVSFTNSLAKLAP-- 170
Query: 253 ITGLRFFTVYGPWGRPDM 270
ITG+ +++ R +
Sbjct: 171 ITGVTAYSINPGITRTPL 188
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 36.6 bits (84), Expect = 0.004
Identities = 31/230 (13%), Positives = 75/230 (32%), Gaps = 13/230 (5%)
Query: 73 RPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG 132
+ S G LVTGA +G +++ L +RG V+ + S ++ + +
Sbjct: 12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS---TESAEEVVAAIKKNGS 68
Query: 133 -VFVIDADINDKSLLDKIFNVV--AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLL 189
+ A++ + ++F F + + + +G + + + F +
Sbjct: 69 DAACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSG----VVSFGHVKDVTPEEFDRVF 124
Query: 190 E-TCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI 248
+ + + + + + ++Y+ +K A E A
Sbjct: 125 TINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIETFARCMAID 184
Query: 249 YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298
+ V + DM + I G+ ++ E + A+V
Sbjct: 185 MAD--KKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQW 232
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (84), Expect = 0.004
Identities = 37/212 (17%), Positives = 63/212 (29%), Gaps = 30/212 (14%)
Query: 73 RPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG 132
R +S G VL+TGA +G + K ++ D + L++
Sbjct: 1 RRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDI----NKHGLEETAAKCKGLGA 56
Query: 133 -VFVIDADINDKSLLDKIFN--VVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGF-VNL 188
V D +++ + V L AGV Y + F VN+
Sbjct: 57 KVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNV 116
Query: 189 L---ETCKSSDPQP------AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239
L T K+ P IV +S++ + Y ++K A
Sbjct: 117 LAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPF------------LLAYCSSKFAAV 164
Query: 240 AIAHAYNHIYG-LSITGLRFFTVYGPWGRPDM 270
L ITG++ + +
Sbjct: 165 GFHKTLTDELAALQITGVKTTCLCPNFVNTGF 196
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 36.3 bits (83), Expect = 0.004
Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAG--VFVI 136
G +VTG+ +G ++ AL +G ++ + ++K R GL + G V
Sbjct: 4 GKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD---AAEIEKVRAGLAAQHGVKVLYD 60
Query: 137 DADINDKSLLDKIFNVVA 154
AD++ + + +
Sbjct: 61 GADLSKGEAVRGLVDNAV 78
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 36.1 bits (83), Expect = 0.004
Identities = 26/116 (22%), Positives = 40/116 (34%), Gaps = 12/116 (10%)
Query: 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138
G LVTG A VG V L G V D E + ++ L ER+ +
Sbjct: 6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDI----NEAAGQQLAAELGERS--MFVRH 59
Query: 139 DINDKSLLDKIFNVV--AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETC 192
D++ ++ + V + L AG+ P + F LL+
Sbjct: 60 DVSSEADWTLVMAAVQRRLGTLNVLVNNAGI----LLPGDMETGRLEDFSRLLKIN 111
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 424 | |||
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.95 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.95 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.94 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.94 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.94 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.94 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.94 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.94 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.94 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.94 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.94 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.94 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.93 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.93 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.93 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.93 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.93 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.93 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.93 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.93 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.93 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.93 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.93 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.93 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.93 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.93 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.92 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.92 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.92 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.92 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.92 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.92 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.92 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.92 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.92 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.92 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.92 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.92 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.92 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.91 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.91 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.91 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.91 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.91 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.91 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.91 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.9 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.9 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.9 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.9 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.9 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.89 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.89 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.88 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.88 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.87 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.87 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.87 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.86 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.86 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.85 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.85 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.85 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.83 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.83 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.82 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.82 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.8 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.78 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.78 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.77 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.75 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.68 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.49 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.46 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.31 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.23 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.2 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.13 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 98.09 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 98.09 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 98.09 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.07 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.05 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.95 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.93 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.92 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.89 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.87 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.85 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.81 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.78 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.77 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.74 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.73 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.7 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.68 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.65 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.64 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.64 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.58 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.5 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.5 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 97.41 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.37 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.3 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.29 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.27 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.22 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.21 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.17 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.15 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.14 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.13 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.12 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.12 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.09 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.99 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.85 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.83 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.81 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.78 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 96.68 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.68 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.66 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 96.64 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.61 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.61 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.59 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.59 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.58 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.58 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.54 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.5 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.48 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.46 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.44 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.41 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.4 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.39 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.37 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.35 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.25 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.17 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.13 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.1 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.09 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.09 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.08 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.08 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.06 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.04 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.03 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 96.01 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.98 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.95 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.94 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 95.91 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 95.9 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.88 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.83 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.81 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.76 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.75 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.74 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.69 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.66 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.63 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.62 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.6 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 95.58 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.58 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 95.51 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 95.49 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.48 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 95.47 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 95.47 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.46 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.46 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.44 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 95.44 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.41 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 95.41 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.4 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.36 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.35 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 95.34 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.26 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.25 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 95.09 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 95.0 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 94.88 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 94.79 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 94.78 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.68 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.55 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 94.51 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.48 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.46 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 94.46 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.36 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 94.35 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 94.24 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 94.24 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 94.21 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 94.19 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 94.12 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 94.11 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.08 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 93.87 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.7 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 93.6 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 93.47 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 93.43 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 93.25 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 93.12 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 93.12 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 93.1 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 93.04 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 93.02 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 93.01 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 93.0 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 92.96 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 92.85 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 92.77 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 92.72 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 92.52 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 92.3 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 92.22 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 92.21 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 91.85 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 91.82 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 91.49 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 91.47 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 91.23 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 91.14 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 90.59 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 90.5 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 90.39 | |
| d1xk7a1 | 402 | Crotonobetainyl-CoA:carnitine CoA-transferase, Cai | 90.36 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 90.35 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 90.3 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 90.17 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 89.96 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 89.8 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 89.41 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 89.21 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 89.16 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 89.06 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 88.93 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 88.62 | |
| d1x74a1 | 359 | 2-methylacyl-CoA racemase Mcr {Mycobacterium tuber | 88.27 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 88.15 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 87.68 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 87.38 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 87.31 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 87.27 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 87.07 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 87.07 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 86.94 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 86.86 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 86.62 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 86.61 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 86.35 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 86.15 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 86.03 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 85.88 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 85.76 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 85.69 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 85.43 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 84.92 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 84.21 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 83.71 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 83.68 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 83.6 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 83.58 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 83.32 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 83.31 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 83.26 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 83.12 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 83.05 | |
| d2vjma1 | 427 | Formyl-CoA transferase {Oxalobacter formigenes [Ta | 82.52 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 82.15 | |
| d2bisa1 | 437 | Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI | 82.03 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 81.98 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 81.59 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 81.45 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 81.23 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 81.2 | |
| d1q7ea_ | 417 | Hypothetical protein YfdW {Escherichia coli [TaxId | 81.07 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 81.02 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 80.93 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 80.84 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 80.81 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 80.75 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 80.62 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 80.31 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 80.13 |
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.7e-50 Score=385.97 Aligned_cols=317 Identities=21% Similarity=0.235 Sum_probs=253.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHH-H-HhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKK-A-RKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~-~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|+|||||||||||++|+++|+++|++|++++|..+........ . ........+++++++|++|.+++++++++.+||+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 7899999999999999999999999999999965432221111 1 1122345689999999999999999999999999
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCC--eEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP--AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATK 235 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~--~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK 235 (424)
|||+|+..+......+++.++++|+.||.||+++|++.++.+ +|||+||+++||.....+++|+++. .|.+.|+.||
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~-~P~~~Y~~sK 160 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVAK 160 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCC-CCCSHHHHHH
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCC-CCCChHHHHH
Confidence 999999988877888999999999999999999999877543 7999999999998777889998877 7899999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcH---HHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHH
Q 042406 236 KAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAY---FFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLA 312 (424)
Q Consensus 236 ~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 312 (424)
+++|.+++.+++.++++++++||++||||+...+... ..++..+..++...+.. +++++.++|+|++|+|++++.
T Consensus 161 ~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~--g~~~~~r~~~~v~D~~~a~~~ 238 (357)
T d1db3a_ 161 LYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL--GNMDSLRDWGHAKDYVKMQWM 238 (357)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEE--SCTTCEECCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEE--CCCCeeecceeechHHHHHHH
Confidence 9999999999999999999999999999976655432 23444455555543332 688999999999999999999
Q ss_pred HhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccccccc-------------------------
Q 042406 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP------------------------- 367 (424)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~------------------------- 367 (424)
+++... ++.||+++++.+|+.|+++++.+.+|........+
T Consensus 239 ~~~~~~--------------~~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (357)
T d1db3a_ 239 MLQQEQ--------------PEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVII 304 (357)
T ss_dssp TTSSSS--------------CCCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEE
T ss_pred HHhCCC--------------CCeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeE
Confidence 887542 17899999999999999999999998654432111
Q ss_pred -----CCCCCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 368 -----LPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 368 -----~~~~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
..++.+.....+|++|++++|||+|+++++|+|+++++++++..++
T Consensus 305 ~~~~~~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~kk 355 (357)
T d1db3a_ 305 AVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKK 355 (357)
T ss_dssp EECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHT
T ss_pred eeccccCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 0123445566789999999999999999999999999887775443
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=2.8e-48 Score=370.09 Aligned_cols=310 Identities=25% Similarity=0.416 Sum_probs=270.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCe------EEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDG------VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~------V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
|+||||||+||||++|++.|+++|+. |+.+|+........ .........++.++.+|+.+...........
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRA---NLAPVDADPRLRFVHGDIRDAGLLARELRGV 77 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGG---GGGGGTTCTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHh---HhhhhhcCCCeEEEEeccccchhhhcccccc
Confidence 78999999999999999999999974 55666543221111 1112224568999999999999988887755
Q ss_pred CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 042406 154 AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAA 233 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~ 233 (424)
|+|+|+|+.........+++..+++|+.|+.+++++|++.+++ +||++||+++||.....+++|+++. .|.+.|+.
T Consensus 78 --d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~-~~I~~Ss~~~yg~~~~~~~~E~~~~-~p~~~Y~~ 153 (322)
T d1r6da_ 78 --DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAA 153 (322)
T ss_dssp --CEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBCTTSCC-CCCSHHHH
T ss_pred --ceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCc-eEEEeecceeecCCCCCCCCCCCCC-CCCCHHHH
Confidence 9999999998877778888999999999999999999999975 9999999999999888899998876 78899999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHH
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAG 313 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 313 (424)
+|.++|.+++.+.++++++++++||++||||++..+.+++.++.++..++++.++ +++++.++|+|++|+|++++.+
T Consensus 154 sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~---~~g~~~r~~i~v~D~a~ai~~~ 230 (322)
T d1r6da_ 154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLY---GDGANVREWVHTDDHCRGIALV 230 (322)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEE---TTSCCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEe---cCCCeEEccEEHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888899999999999999988 7889999999999999999999
Q ss_pred hhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCccc
Q 042406 314 LDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPT 393 (424)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p~ 393 (424)
++.... +++||+++++++++.|+++.+.+.+|.+........+++.+.....+|++|+++.|||+|+
T Consensus 231 ~~~~~~-------------~~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~ 297 (322)
T d1r6da_ 231 LAGGRA-------------GEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQ 297 (322)
T ss_dssp HHHCCT-------------TCEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCC
T ss_pred HhCCCC-------------CCeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCC
Confidence 988653 2799999999999999999999999988766555555566667778999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc
Q 042406 394 TDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 394 ~~l~~~l~~~v~~~~~~~~ 412 (424)
++++|+|+++++||+++.+
T Consensus 298 ~~~eegI~~~i~w~~~n~~ 316 (322)
T d1r6da_ 298 VSFADGLARTVRWYRENRG 316 (322)
T ss_dssp SCHHHHHHHHHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHhHH
Confidence 9999999999999998654
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=9.6e-49 Score=379.07 Aligned_cols=314 Identities=24% Similarity=0.381 Sum_probs=260.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeE-EEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGV-LGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
|+||||||+||||++|+++|+++|+.| +++++....... ..........+++++++|++|.+.+.++++..+||+|
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V 77 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNL---ESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAV 77 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCG---GGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccH---HHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEE
Confidence 789999999999999999999999975 455553322111 0112233456899999999999999999998899999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCC--------CeEEEecCCcccCCCCCCC---------CCCC
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQ--------PAIVWASSSSVYGVNKKVP---------FSEK 221 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~--------~~~v~~SS~~vyg~~~~~~---------~~e~ 221 (424)
||+|+..++..+..++..++++|+.|+.+++++|++.+.. ++||++||+.+||.....+ ..++
T Consensus 78 ihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e 157 (361)
T d1kewa_ 78 MHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157 (361)
T ss_dssp EECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred EECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCccc
Confidence 9999998888888899999999999999999999876432 3899999999998654322 2223
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFT 301 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 301 (424)
+.+..|.+.|+.||.++|.++..+++.++++++++||++||||++..+.+++.++.+++.++++.++ +++++.++|+
T Consensus 158 ~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~---g~g~~~r~~i 234 (361)
T d1kewa_ 158 TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRDWL 234 (361)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEE---TTSCCEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEe---CCCCeEEeCE
Confidence 3344788999999999999999999999999999999999999988788889999999999999988 7889999999
Q ss_pred cHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccc-------cCCCCCCc
Q 042406 302 YIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVL-------PLPRNGDV 374 (424)
Q Consensus 302 ~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~-------~~~~~~~~ 374 (424)
|++|+|++++.+++.... +++|||++++++++.|+++.+.+.++........ ...++.+.
T Consensus 235 ~v~D~a~ai~~~~~~~~~-------------~~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (361)
T d1kewa_ 235 YVEDHARALHMVVTEGKA-------------GETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHD 301 (361)
T ss_dssp EHHHHHHHHHHHHHHCCT-------------TCEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCC
T ss_pred EHHHHHHHHHHHHhcCCC-------------CCeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCC
Confidence 999999999999987642 2799999999999999999999887654332111 11234566
Q ss_pred ccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 375 QFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 375 ~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
.....|++|++++|||+|+++++|+|+++++||+++.+
T Consensus 302 ~~~~~d~~k~~~~lgw~P~~~l~e~i~~ti~w~~~n~~ 339 (361)
T d1kewa_ 302 RRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQ 339 (361)
T ss_dssp CBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHCHH
T ss_pred ceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 67789999999999999999999999999999988644
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-47 Score=366.30 Aligned_cols=319 Identities=24% Similarity=0.396 Sum_probs=266.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||+||||++|++.|+++|++|++++|............ +.....++.++++|++|.+.+.++++..+||+||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI--ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHH--HHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHH--HhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence 78999999999999999999999999999998655433322221 2234468999999999999999999988889999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|+|+...+..+..+++..+++|+.||.+++++|++.+++ +||++||.++|+.....+..|+++...|.+.|+.+|.++|
T Consensus 79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~-~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~~e 157 (338)
T d1udca_ 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHH
T ss_pred ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCC-EEEecCcceEEccccccccccccccCCCcchHHHHHhhhh
Confidence 999988878788899999999999999999999999986 9999999999998777777777777788999999999999
Q ss_pred HHHHHHHHHh-CCcEEEEEeccccCCCCCC----------CCcHHHHHHHHHc-CCceeEEec---CCCCccccccccHH
Q 042406 240 AIAHAYNHIY-GLSITGLRFFTVYGPWGRP----------DMAYFFFTRDIIR-GKRITVYEA---PDGASVARDFTYID 304 (424)
Q Consensus 240 ~~~~~~~~~~-~i~~~~vrp~~v~G~~~~~----------~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~i~v~ 304 (424)
.++.+..... +++++++||+++|||+... +.+++.++..+.. +.++.++.. ..++.+.+||+|++
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~ 237 (338)
T d1udca_ 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237 (338)
T ss_dssp HHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHH
T ss_pred HHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEe
Confidence 9999877654 8999999999999986432 2345555555544 346666622 12367889999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHH
Q 042406 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLA 384 (424)
Q Consensus 305 Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~ 384 (424)
|++.++..+....... ..+++||+++++++|+.|+++.+.+.+|.+.+....+. ++.+.....+|++|+
T Consensus 238 D~~~~~~~~~~~~~~~----------~~~~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~ 306 (338)
T d1udca_ 238 DLADGHVVAMEKLANK----------PGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-REGDLPAYWADASKA 306 (338)
T ss_dssp HHHHHHHHHHHHHTTC----------CEEEEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECC-CTTCCSBCCBCCHHH
T ss_pred ehhhhccccccccccc----------cCcceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCC-CCCCCCEeeECHHHH
Confidence 9999988877765432 23479999999999999999999999998888777665 356667778999999
Q ss_pred HhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 385 QRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 385 ~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
++.|||+|.++++|+|+++++|+.++.+
T Consensus 307 ~~~lgwkp~~~l~egi~~ti~w~~~~~~ 334 (338)
T d1udca_ 307 DRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHCCCcCCCHHHHHHHHHHHHHhchh
Confidence 9999999999999999999999999754
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-48 Score=368.82 Aligned_cols=303 Identities=27% Similarity=0.421 Sum_probs=254.1
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
.|+||||||+||||++|+++|+++|++|++++|......... ........+.....|+.+ .++. ++|+|
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~----~~~~~~~~~d~~~~~~~~-----~~~~--~~d~V 69 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNV----EHWIGHENFELINHDVVE-----PLYI--EVDQI 69 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGT----GGGTTCTTEEEEECCTTS-----CCCC--CCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHH----HHhcCCCceEEEehHHHH-----HHHc--CCCEE
Confidence 378999999999999999999999999999998543222211 111233456666666644 3444 56999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCC----CCCCCChHHHH
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDR----TDQPASLYAAT 234 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~----~~~~~~~Y~~s 234 (424)
||+|+......+..++...+++|+.|+.+|+++|++.++ ++||+||+++||.....+.+|+.. +..|.+.|+.|
T Consensus 70 ihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~s 147 (312)
T d2b69a1 70 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEG 147 (312)
T ss_dssp EECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHH
T ss_pred EECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHH
Confidence 999998887777788899999999999999999999875 899999999999766666666432 23678899999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--CCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHH
Q 042406 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP--DMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLA 312 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 312 (424)
|.++|.+++.+++.+|++++++||++||||+... ..+++.++.+++.++++.++ +++.+.++|+|++|+|++++.
T Consensus 148 K~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~---~~g~~~r~~i~v~D~~~~~~~ 224 (312)
T d2b69a1 148 KRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNGLVA 224 (312)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEE---SSSCCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEe---CCCCeeEccEEHHHHHHHHHH
Confidence 9999999999999999999999999999998654 35778899999999999988 788999999999999999998
Q ss_pred HhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCcc
Q 042406 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMP 392 (424)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p 392 (424)
+++.... ++||+++++.+++.++++++.+.++.+.++...+.. .++......|++|++++|||+|
T Consensus 225 ~~~~~~~--------------~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lgw~p 289 (312)
T d2b69a1 225 LMNSNVS--------------SPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA-QDDPQKRKPDIKKAKLMLGWEP 289 (312)
T ss_dssp HHTSSCC--------------SCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC-TTCCCCCCBCCHHHHHHHCCCC
T ss_pred HHhhccC--------------CceEecCCcccchhhHHHHHHHHhCCCCceEECCCC-CCCCCeeeECHHHHHHHHCCCC
Confidence 8865432 689999999999999999999999998887776643 5666777889999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhc
Q 042406 393 TTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 393 ~~~l~~~l~~~v~~~~~~~~ 412 (424)
.++++++|+++++||+++.+
T Consensus 290 ~~~l~~~I~~~i~w~~~~~~ 309 (312)
T d2b69a1 290 VVPLEEGLNKAIHYFRKELE 309 (312)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998765
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=9.7e-47 Score=362.23 Aligned_cols=318 Identities=29% Similarity=0.453 Sum_probs=269.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHh--hhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARK--GLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.+.|+|||||||||||++|+++|+++|++|+++||............+. ......+++++.+|+.|...+.......
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~- 92 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV- 92 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC-
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc-
Confidence 3567999999999999999999999999999999866544333322222 2233468999999999999988888766
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
++++|+++......+..++...+.+|+.|+.+++++|.+.+++ +||++||+++||.....+++|+++. .|.+.|+.+
T Consensus 93 -~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 169 (341)
T d1sb8a_ 93 -DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKVEDTIG-KPLSPYAVT 169 (341)
T ss_dssp -SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCc-eEEEcccceeeCCCCCCCccCCCCC-CCCCcchHH
Confidence 9999999988777778889999999999999999999999976 9999999999998888889888866 889999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----CcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHH
Q 042406 235 KKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD----MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGC 310 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~ 310 (424)
|.++|.++..+++.++++++++||++||||+..++ .+++.++..++.|+++.++ +++.+.++|+|++|+|.++
T Consensus 170 K~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~---g~g~~~r~~i~v~D~~~a~ 246 (341)
T d1sb8a_ 170 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQAN 246 (341)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEc---CCCCEEEEEEEEeccchhh
Confidence 99999999999999999999999999999976543 4667888999999999998 6889999999999999999
Q ss_pred HHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccc----cCCCCCCcccccCChHHHHh
Q 042406 311 LAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVL----PLPRNGDVQFTHANISLAQR 386 (424)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~----~~~~~~~~~~~~~d~s~~~~ 386 (424)
..++...... .+++||+++++..|+.|+++.+.+.++.+...... ...+..+......|++|+++
T Consensus 247 ~~~~~~~~~~-----------~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 315 (341)
T d1sb8a_ 247 LLAATAGLDA-----------RNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAK 315 (341)
T ss_dssp HHHHTCCGGG-----------CSEEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHH
T ss_pred hhhhhccccc-----------cceeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHH
Confidence 9998776543 23799999999999999999999999865422111 11234556667789999999
Q ss_pred HcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 387 ELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 387 ~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
.|||+|+++++++|+++++||+++++
T Consensus 316 ~LGw~p~~sl~~gi~~ti~wy~~~~k 341 (341)
T d1sb8a_ 316 LLGYAPKYDVSAGVALAMPWYIMFLK 341 (341)
T ss_dssp HTCCCCCCCHHHHHHHHHHHHHHHTC
T ss_pred HHCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999753
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=7.9e-46 Score=352.61 Aligned_cols=313 Identities=21% Similarity=0.204 Sum_probs=261.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|||||||||||++|+++|+++|++|++++|..+......- .......+++++++|++|.+.+.+++....+++++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l---~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 77 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRL---RELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVY 77 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHH---HHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHH---HHhcccCCcEEEEccccChHHhhhhhccccccccc
Confidence 689999999999999999999999999999997653222111 11123457999999999999999999998889999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|+|+.........++...+.+|+.|+.+++++|++.+..++|++.||+.+||.....+.+|+++. .|.+.|+.+|.++|
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 156 (321)
T d1rpna_ 78 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPF-YPRSPYGVAKLYGH 156 (321)
T ss_dssp ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHHH
T ss_pred cccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCc-cccChhHHHHHHHH
Confidence 99998887777888899999999999999999999998889999999999998877788887766 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHH---HHHHHHHcCC-ceeEEecCCCCccccccccHHHHHHHHHHHhh
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYF---FFTRDIIRGK-RITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 315 (424)
.++..+.+.++++++++||+++|||....+.... .++.++..++ +...+ +++++.++|+|++|+|++++.+++
T Consensus 157 ~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~---g~g~~~r~~i~v~D~~~~~~~~~~ 233 (321)
T d1rpna_ 157 WITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRL---GNVDAKRDWGFAGDYVEAMWLMLQ 233 (321)
T ss_dssp HHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE---SCTTCEEECEEHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEE---CCCCeEEccEEeHHHHHHHHHHHh
Confidence 9999999999999999999999999766554332 3344444444 44444 788999999999999999999998
Q ss_pred hccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccC---CCCCCcccccCChHHHHhHcCCcc
Q 042406 316 TAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL---PRNGDVQFTHANISLAQRELGYMP 392 (424)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~---~~~~~~~~~~~d~s~~~~~LG~~p 392 (424)
++.. +.||+++++..++.++++.+.+.++.+.+...... .++.+......|++|+++.|||+|
T Consensus 234 ~~~~--------------~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P 299 (321)
T d1rpna_ 234 QDKA--------------DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKP 299 (321)
T ss_dssp SSSC--------------CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCC
T ss_pred cCCc--------------CCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCc
Confidence 7642 67999999999999999999999997654332221 234566677889999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhcc
Q 042406 393 TTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 393 ~~~l~~~l~~~v~~~~~~~~~ 413 (424)
+++++|+|+++++|+++..++
T Consensus 300 ~~~l~e~i~~tv~~~l~~~~~ 320 (321)
T d1rpna_ 300 RTSLDELIRMMVEADLRRVSR 320 (321)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcC
Confidence 999999999999999886543
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1.4e-45 Score=354.96 Aligned_cols=310 Identities=22% Similarity=0.307 Sum_probs=258.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCC--CCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF--NNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+|+|||||||||||++|+++|+++|+.|.++.++ +.... ..........+++++.+|++|.+.+.+++...
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~----~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~-- 74 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN----KANLEAILGDRVELVVGDIADAELVDKLAAKA-- 74 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC----GGGTGGGCSSSEEEEECCTTCHHHHHHHHTTC--
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCcccc----HHHHHHhhcCCeEEEEccCCCHHHHHHHHhhh--
Confidence 47899999999999999999999999875554432 21111 11112234568999999999999999999976
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC------------CCCCCCCCC
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNK------------KVPFSEKDR 223 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~------------~~~~~e~~~ 223 (424)
|.|+|+|+......+..++...+++|+.|+.+++++++..+. ++|++||+++||... ...+.|.++
T Consensus 75 ~~v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~--k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~ 152 (346)
T d1oc2a_ 75 DAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETN 152 (346)
T ss_dssp SEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSC
T ss_pred hhhhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc--cccccccceEecccCccccccccccCcccccccCCC
Confidence 999999999888777788999999999999999999999985 899999999998421 123344444
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
. .|.+.|+.+|.++|.+++.+++.++++++++||++||||+...+..+..++..+..+.++.++ +++++.++|+|+
T Consensus 153 ~-~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~---~~g~~~r~~i~v 228 (346)
T d1oc2a_ 153 Y-NPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY---GEGKNVRDWIHT 228 (346)
T ss_dssp C-CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEE---TTSCCEEECEEH
T ss_pred C-CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEe---CCCCccccccch
Confidence 4 778999999999999999999999999999999999999887777888888888899998887 789999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHH
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISL 383 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~ 383 (424)
+|+|++++.+++.... ++.||++++++.++.++++.+.+.++.+.........++.+.....+|++|
T Consensus 229 ~D~a~a~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k 295 (346)
T d1oc2a_ 229 NDHSTGVWAILTKGRM-------------GETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASK 295 (346)
T ss_dssp HHHHHHHHHHHHHCCT-------------TCEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHH
T ss_pred hhHHHHHHHHHhhccc-------------CccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHH
Confidence 9999999998887653 278999999999999999999999997654433333445566667789999
Q ss_pred HHhHcCCcccC-CHHHHHHHHHHHHHHHhc
Q 042406 384 AQRELGYMPTT-DLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 384 ~~~~LG~~p~~-~l~~~l~~~v~~~~~~~~ 412 (424)
+++.|||+|++ +|+++|+++++||+++.+
T Consensus 296 ~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~ 325 (346)
T d1oc2a_ 296 LRDELGWTPQFTDFSEGLEETIQWYTDNQD 325 (346)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999986 699999999999998543
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-44 Score=345.89 Aligned_cols=322 Identities=30% Similarity=0.426 Sum_probs=263.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchh----hhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYE----TSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
|+||||||+||||++|+++|+++|++|+++||...... ..............++.++++|++|.+.+.+++.+.++
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 82 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF 82 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccccc
Confidence 68999999999999999999999999999986433211 01111222233557899999999999999999999989
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHH
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATK 235 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK 235 (424)
++++|+||..++.....++...+++|+.|+.++++++++.+++ +|+++||+.+|+........++.+...+.++|+.+|
T Consensus 83 ~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~-~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y~~~k 161 (346)
T d1ek6a_ 83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSK 161 (346)
T ss_dssp EEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHHH
T ss_pred ccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcc-cccccccceeeeccccccccccccccccCChHHHHH
Confidence 9999999998888888889999999999999999999999987 999999999999876655555555556788999999
Q ss_pred HHHHHHHHHHHHH-hCCcEEEEEeccccCCCCC----------CCCcHHHHHHHHH-cCCceeEEec---CCCCcccccc
Q 042406 236 KAGEAIAHAYNHI-YGLSITGLRFFTVYGPWGR----------PDMAYFFFTRDII-RGKRITVYEA---PDGASVARDF 300 (424)
Q Consensus 236 ~~~e~~~~~~~~~-~~i~~~~vrp~~v~G~~~~----------~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~ 300 (424)
..+|..+.++.+. .+++.+++||+.+|||... .+.+.+.+...+. .+.++.++.. ...+.+.+||
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdf 241 (346)
T d1ek6a_ 162 FFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241 (346)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECE
T ss_pred HHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeE
Confidence 9999999998775 4899999999999998542 1234555544444 4556666532 1346778999
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHAN 380 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d 380 (424)
+|++|+|.++..++...... ..+++||+++++.+++.|+++.+.+.+|.+.++...+. ++++......|
T Consensus 242 i~v~D~a~~~~~~~~~~~~~----------~~~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~~-~~~e~~~~~~d 310 (346)
T d1ek6a_ 242 IHVVDLAKGHIAALRKLKEQ----------CGCRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR-REGDVAACYAN 310 (346)
T ss_dssp EEHHHHHHHHHHHHHHHTTT----------CCEEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECC-CTTCCSEECBC
T ss_pred EEEEeccchhhhhccccccc----------cCceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECCC-CCCCCCEeeEC
Confidence 99999999999887665432 23479999999999999999999999999888776654 46777788899
Q ss_pred hHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 381 ISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 381 ~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
++|+++.|||+|+++++|+|+++++||+++-+.
T Consensus 311 ~~k~~~~lgw~p~~slee~I~~~i~w~~~n~~~ 343 (346)
T d1ek6a_ 311 PSLAQEELGWTAALGLDRMCEDLWRWQKQNPSG 343 (346)
T ss_dssp CHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCcCCCHHHHHHHHHHHHHhCHhh
Confidence 999999999999999999999999999987543
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-44 Score=345.70 Aligned_cols=315 Identities=19% Similarity=0.195 Sum_probs=255.9
Q ss_pred CeE-EEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHH---HhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 80 LTV-LVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKA---RKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 80 ~~v-lItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
|+| |||||+||||++|+++|+++|++|++++|..+......... ........+++++++|++|.+.+.+++.+.++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 567 99999999999999999999999999999654322111000 01112235789999999999999999999999
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCC--eEEEecCCcccCCCCCCCCCCCCCCCCCCChHHH
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP--AIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAA 233 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~--~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~ 233 (424)
++++|+|+.........++...+++|+.||.+++++|++.+..+ +||++||++|||.....+++|+++. .|.+.|+.
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~-~P~~~Yg~ 159 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPF-YPRSPYGA 159 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCC-CCCSHHHH
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCC-CCCCHHHH
Confidence 99999999888777778888899999999999999999987643 8999999999998777889998876 78999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHH----HHHHHHHcCCceeEEecCCCCccccccccHHHHHHH
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYF----FFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKG 309 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 309 (424)
||.++|.++..+.+.++++++++||+++|||......... .+......+.+...+ +++++.++|+|++|++.+
T Consensus 160 sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~---g~g~~~r~~i~v~D~~~a 236 (347)
T d1t2aa_ 160 AKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL---GNLDAKRDWGHAKDYVEA 236 (347)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEE---SCTTCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeec---CCCcceeeeeEecHHHHH
Confidence 9999999999999999999999999999999765544333 344445556767766 788999999999999999
Q ss_pred HHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccC--------------------C
Q 042406 310 CLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPL--------------------P 369 (424)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~--------------------~ 369 (424)
+..+++.... ..|+++.+...++.+....+...++........+. .
T Consensus 237 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (347)
T d1t2aa_ 237 MWLMLQNDEP--------------EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYY 302 (347)
T ss_dssp HHHHHHSSSC--------------CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGS
T ss_pred HHHHhhcCCC--------------ccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCC
Confidence 9999987542 56889998999999999999999987653322110 1
Q ss_pred CCCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhc
Q 042406 370 RNGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYN 412 (424)
Q Consensus 370 ~~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~ 412 (424)
++.+.....+|++|++++|||+|+++++|+|+++++|.++.++
T Consensus 303 rp~~~~~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~~~~~k 345 (347)
T d1t2aa_ 303 RPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMR 345 (347)
T ss_dssp CSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 2234445678999999999999999999999999998777554
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.1e-44 Score=344.77 Aligned_cols=309 Identities=23% Similarity=0.338 Sum_probs=252.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHH-HhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDK-IFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~-~~~~~~~d~ 157 (424)
|+||||||+||||++|+++|+++|+ +|+++++.+.... ......+++++++|+++.+.+.+ ++++ +|+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~--------~~~~~~~~~~i~~Di~~~~~~~~~~~~~--~d~ 70 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS--------RFLNHPHFHFVEGDISIHSEWIEYHVKK--CDV 70 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG--------GGTTCTTEEEEECCTTTCSHHHHHHHHH--CSE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchh--------hhccCCCeEEEECccCChHHHHHHHHhC--CCc
Confidence 7899999999999999999999995 8999998654211 22235789999999998766655 5554 599
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC------CCCCCCChH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKD------RTDQPASLY 231 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~------~~~~~~~~Y 231 (424)
|||+|+.........++...+.+|+.|+.+++++|.+.+. +++++||+.+|+........|.. +...|.+.|
T Consensus 71 Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~--~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y 148 (342)
T d2blla1 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK--RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 148 (342)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC--EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH
T ss_pred cccccccccccccccCCccccccccccccccccccccccc--cccccccccccccccccccccccccccccccCCCcchh
Confidence 9999999887777788889999999999999999999886 67899999999976655444332 233566889
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC--------CCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 232 AATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP--------DMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 232 ~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
+.||.++|.++..+.+.+|++++++||+.+|||.... ......++..++.|+++.++ +++++.++|+|+
T Consensus 149 ~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~g~~~r~~i~v 225 (342)
T d2blla1 149 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTDI 225 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEG---GGSCCEEECEEH
T ss_pred hhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCcccc---CCCCeeeeeccc
Confidence 9999999999999999999999999999999986433 22466788899999998887 688999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC-cccHHHHHHHHHHHhCcccccccccCCC------------
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT-PVPVSRLVSLLEKILKVKAETKVLPLPR------------ 370 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~s~~el~~~i~~~~g~~~~~~~~~~~~------------ 370 (424)
+|+|++++.+++.+... ..+++||+++++ .+|+.|+++.+.+.++........+...
T Consensus 226 ~D~~~a~~~~~~~~~~~----------~~g~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (342)
T d2blla1 226 RDGIEALYRIIENAGNR----------CDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYG 295 (342)
T ss_dssp HHHHHHHHHHHHCGGGT----------TTTEEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC-------
T ss_pred ccccceeeeehhhcccc----------CCCeEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceeccccccc
Confidence 99999999999876432 234899998764 5899999999999999776655544221
Q ss_pred --CCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 371 --NGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 371 --~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
..+..+..+|++|++++|||+|+++++|+|+++++||+++.+.
T Consensus 296 ~~~~~~~~~~~d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~~~ 340 (342)
T d2blla1 296 KGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (342)
T ss_dssp -----CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred cccccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCcCC
Confidence 1123445679999999999999999999999999999988653
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.3e-44 Score=347.45 Aligned_cols=306 Identities=23% Similarity=0.315 Sum_probs=251.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.++|+||||||+||||++|+++|+++|++|+++++.+.... ........+..+|+.|.+.+.++++++ |
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~---------~~~~~~~~~~~~D~~~~~~~~~~~~~~--d 81 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM---------TEDMFCDEFHLVDLRVMENCLKVTEGV--D 81 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSS---------CGGGTCSEEEECCTTSHHHHHHHHTTC--S
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccch---------hhhcccCcEEEeechhHHHHHHHhhcC--C
Confidence 36789999999999999999999999999999998554211 112245688999999999999999866 9
Q ss_pred EEEEcccccCchh-hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCC------CCCCCCCC
Q 042406 157 HVMHLAAQAGVRY-AMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEK------DRTDQPAS 229 (424)
Q Consensus 157 ~vi~~Ag~~~~~~-~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~------~~~~~~~~ 229 (424)
+|||+|+...... ...++...+.+|+.++.+++++|++.+++ +||++||+.+|+.....+..+. ..+..|.+
T Consensus 82 ~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk-~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~ 160 (363)
T d2c5aa1 82 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD 160 (363)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred eEeecccccccccccccccccccccccchhhHHHHhHHhhCcc-ccccccccccccccccccccccccccccCCcCCCCC
Confidence 9999998765533 35667889999999999999999999986 9999999999997554444332 22347789
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC-----cHHHHHHHHHcCCceeEEecCCCCccccccccHH
Q 042406 230 LYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDM-----AYFFFTRDIIRGKRITVYEAPDGASVARDFTYID 304 (424)
Q Consensus 230 ~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 304 (424)
.|+.+|+++|.+++.+.+.+|++++++||+++|||++.... ....+............+ +++.+.++|+|++
T Consensus 161 ~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~rd~i~v~ 237 (363)
T d2c5aa1 161 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW---GDGLQTRSFTFID 237 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEE---SCSCCEECCEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCccccccccccccccccccccccccccc---CCCCeEEEEeehh
Confidence 99999999999999999999999999999999999764321 222334444556666666 6889999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHH
Q 042406 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLA 384 (424)
Q Consensus 305 Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~ 384 (424)
|++++++.+++... +++||++++..+|+.|+++++.+.+|.+.++...+.+ .+.....+|++|+
T Consensus 238 D~~~~~~~~~~~~~--------------~~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~--~~~~~~~~d~ska 301 (363)
T d2c5aa1 238 ECVEGVLRLTKSDF--------------REPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP--EGVRGRNSDNNLI 301 (363)
T ss_dssp HHHHHHHHHHHSSC--------------CSCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC--CCCSBCEECCHHH
T ss_pred HHHHHHHHHHhCCC--------------CCeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCCC--CCccccccCHHHH
Confidence 99999999887543 1689999999999999999999999988877666543 4455567899999
Q ss_pred HhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 385 QRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 385 ~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
++.|||+|.++++|+|+++++||+++.++
T Consensus 302 ~~~LGw~p~~sleegi~~ti~w~~~~~~~ 330 (363)
T d2c5aa1 302 KEKLGWAPNMRLKEGLRITYFWIKEQIEK 330 (363)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887553
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.2e-44 Score=342.57 Aligned_cols=321 Identities=26% Similarity=0.361 Sum_probs=251.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|.||||||+||||++|+++|+++|++|+++++.......... ........+++++++|++|.+.++++++..+||+||
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~--~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 79 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVA--RLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVI 79 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHH--HHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHH--hHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence 579999999999999999999999999999875543322222 112234568999999999999999999988999999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC----CCCCCCCCCCCCCCChHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNK----KVPFSEKDRTDQPASLYAATK 235 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~----~~~~~e~~~~~~~~~~Y~~sK 235 (424)
|+|+...+.....++..+..+|+.|+.+++++|++.+++ +||++||..+||... ..+++|+.+. .|.+.|+.||
T Consensus 80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~-~~i~~SS~~vyg~~~~~~~~~~~~e~~~~-~p~~~Y~~sK 157 (347)
T d1z45a2 80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPYGHTK 157 (347)
T ss_dssp ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCCGGGSTTCCSBCTTSCC-CCCSHHHHHH
T ss_pred EccccccccccccCcccccccchhhhHHHHHHHHhcccc-eEEeecceeeecCcccCCCCCccccccCC-CCCChhHhHH
Confidence 999998877778888999999999999999999999986 999999999998643 3456666554 7889999999
Q ss_pred HHHHHHHHHHHHH--hCCcEEEEEeccccCCCCC----------CCCcHHHHHHHHHc-CCceeEEec---CCCCccccc
Q 042406 236 KAGEAIAHAYNHI--YGLSITGLRFFTVYGPWGR----------PDMAYFFFTRDIIR-GKRITVYEA---PDGASVARD 299 (424)
Q Consensus 236 ~~~e~~~~~~~~~--~~i~~~~vrp~~v~G~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~ 299 (424)
.++|.++.++.+. .+++++++||+++||+... .+.+++.+...+.. +.++.++.. ..++...+|
T Consensus 158 ~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d 237 (347)
T d1z45a2 158 YAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRD 237 (347)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEEC
T ss_pred HHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeee
Confidence 9999999998764 4899999999999987431 23345555544432 344444311 023456788
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHA 379 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 379 (424)
++++.|++.+++.+++....... ....+++||+++++++|+.|+++.+.+.+|.+.+....+. ++.+.....+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~ 310 (347)
T d1z45a2 238 YIHVVDLAKGHIAALQYLEAYNE------NEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR-RAGDVLNLTA 310 (347)
T ss_dssp EEEHHHHHHHHHHHHHHHHHSCT------TCCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC----------CCCCCB
T ss_pred eeeeecccccccccccccccccc------cccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCC-CCCCCCEeeE
Confidence 99999999999988876543211 0123489999999999999999999999999888776554 3556667789
Q ss_pred ChHHHHhHcCCcccCCHHHHHHHHHHHHHHHh
Q 042406 380 NISLAQRELGYMPTTDLETGLKKFVRWYLSYY 411 (424)
Q Consensus 380 d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~ 411 (424)
|++|++++|||+|.++++|+|+++++|++++-
T Consensus 311 d~sk~~~~lGw~p~~~lee~i~~ti~w~~~np 342 (347)
T d1z45a2 311 KPDRAKRELKWQTELQVEDSCKDLWKWTTENP 342 (347)
T ss_dssp CCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCh
Confidence 99999999999999999999999999999873
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.7e-43 Score=341.82 Aligned_cols=319 Identities=23% Similarity=0.296 Sum_probs=248.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch--------------hhhHHHHHhhhhccCCeEEEEccCCCHH
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY--------------ETSLKKARKGLLERAGVFVIDADINDKS 144 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~--------------~~~~~~~~~~~~~~~~v~~~~~Dl~d~~ 144 (424)
||+||||||+||||++|+++|+++|++|+++|....+. ...............+++++++|++|.+
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 79999999999999999999999999999998422110 0011111122234578999999999999
Q ss_pred HHHHHhhccCccEEEEcccccCchhhccCh---HHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCC-
Q 042406 145 LLDKIFNVVAFTHVMHLAAQAGVRYAMQNP---NSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSE- 220 (424)
Q Consensus 145 ~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~---~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e- 220 (424)
.+++++++.+||+|||+|+......+..++ ..++.+|+.||.+++++|++.+..+++++.||..+|+.... +..|
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~-~~~~~ 159 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEG 159 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CBCSS
T ss_pred HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccc-ccccc
Confidence 999999999999999999987766655554 46789999999999999999998878999999988875432 1111
Q ss_pred ------C------CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC-----------------CCc
Q 042406 221 ------K------DRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP-----------------DMA 271 (424)
Q Consensus 221 ------~------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~-----------------~~~ 271 (424)
+ ..+..|.+.|+.||+++|.++..+.++++++++++||++||||+... ..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 239 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccc
Confidence 1 11336778999999999999999999999999999999999997532 234
Q ss_pred HHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHH
Q 042406 272 YFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVS 351 (424)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~ 351 (424)
+..++..+..++++.++ +++.+.+||+|++|+|++++.++++..... ....++ .+++.+|+.|+++
T Consensus 240 i~~~~~~~~~~~~~~i~---g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g----------~~~~~~-~~~~~~si~el~~ 305 (393)
T d1i24a_ 240 LNRFCVQAAVGHPLTVY---GKGGQTRGYLDIRDTVQCVEIAIANPAKAG----------EFRVFN-QFTEQFSVNELAS 305 (393)
T ss_dssp HHHHHHHHHHTCCEEEE---TTSCCEEEEEEHHHHHHHHHHHHHSCCCTT----------CEEEEE-ECSEEEEHHHHHH
T ss_pred hhhhhHHhhcCCeeEEe---eecccccccccccchHHHHHHHHHhhcccc----------eeeeec-CCCCeeEHHHHHH
Confidence 67788899999999998 789999999999999999999998765321 012233 3456799999999
Q ss_pred HHHHHhC---cccccccccCCC-CCCcccccCChHHHHhHcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 352 LLEKILK---VKAETKVLPLPR-NGDVQFTHANISLAQRELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 352 ~i~~~~g---~~~~~~~~~~~~-~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
++.+..+ .+......+.++ ..+..+...|+++++ +|||+|+++++++++++++|++++...
T Consensus 306 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~LGw~P~~~~~~~i~~~~~~~~~~k~~ 370 (393)
T d1i24a_ 306 LVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFKDR 370 (393)
T ss_dssp HHHHHHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHhhCCCcceeeccCCCCCCCccEecCCHHHHH-HcCCccccCHHHHHHHHHHHHHHHHHh
Confidence 9988764 344443333332 345556678899997 599999999999999999999987664
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=3.8e-42 Score=335.32 Aligned_cols=327 Identities=21% Similarity=0.349 Sum_probs=256.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh-CCCeEEEEeCCCCch---------hhhHHHHHh-----hhhccCCeEEEEccCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKK-RGDGVLGLDNFNNYY---------ETSLKKARK-----GLLERAGVFVIDADIND 142 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~---------~~~~~~~~~-----~~~~~~~v~~~~~Dl~d 142 (424)
++|+||||||+||||++|+++|++ .|++|+++|+..... +........ .......+.++.+|++|
T Consensus 1 ~~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d 80 (383)
T d1gy8a_ 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (383)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence 368999999999999999999986 689999998522111 111111111 11223568999999999
Q ss_pred HHHHHHHhhcc-CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCC------
Q 042406 143 KSLLDKIFNVV-AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKK------ 215 (424)
Q Consensus 143 ~~~v~~~~~~~-~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~------ 215 (424)
.+.++++++.. ++|+|||+|+.........++...+.+|+.++.++++++++.+++ +++++||..+|+....
T Consensus 81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~ 159 (383)
T d1gy8a_ 81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTN 159 (383)
T ss_dssp HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGTBSCCC-----C
T ss_pred HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCc-cccccccccccccccccccccc
Confidence 99999999876 459999999998877777888899999999999999999999986 9999999999875443
Q ss_pred -CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC---------CcHHHHHHHHH-----
Q 042406 216 -VPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD---------MAYFFFTRDII----- 280 (424)
Q Consensus 216 -~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~---------~~~~~~~~~~~----- 280 (424)
.++.|+++. .|.+.|+.+|+++|.++..+.+.+|++++++||+++|||+...+ .+.+.++..++
T Consensus 160 ~~~~~e~~~~-~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~ 238 (383)
T d1gy8a_ 160 AEPIDINAKK-SPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAP 238 (383)
T ss_dssp CCCBCTTSCC-BCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSC
T ss_pred ccccccccCC-CCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhccc
Confidence 344555544 78899999999999999999999999999999999999987543 22344433332
Q ss_pred -----------cCCceeEEecC---CCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccH
Q 042406 281 -----------RGKRITVYEAP---DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPV 346 (424)
Q Consensus 281 -----------~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~ 346 (424)
.+.++.++... +++.+.|||+|++|+|++++.+++....... ......+++||+++++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~----~~~~~~~~i~Ni~s~~~~s~ 314 (383)
T d1gy8a_ 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGP----NDKSKYFSVFNLGTSRGYSV 314 (383)
T ss_dssp C-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCT----TTGGGSEEEEEESCSCCEEH
T ss_pred cccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccc----cccccCccEEEeCCCCceeH
Confidence 34555665321 3477889999999999999999887543211 11224558999999999999
Q ss_pred HHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHhHcCCcccCCHHHHHHHH-HHHHHHHh
Q 042406 347 SRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQRELGYMPTTDLETGLKKF-VRWYLSYY 411 (424)
Q Consensus 347 ~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~-v~~~~~~~ 411 (424)
.|+++.+.+.+|.+.++...+. ++++......|++|++++|||+|+++++|+|+++ +.|++++.
T Consensus 315 ~el~~~i~~~~~~~~~~~~~~~-~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~~ 379 (383)
T d1gy8a_ 315 REVIEVARKTTGHPIPVRECGR-REGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHP 379 (383)
T ss_dssp HHHHHHHHHHHCCCCCEEEECC-CTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHhCCCCceEECCC-CCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhCc
Confidence 9999999999998887776653 4667777888999999999999999999999887 58998864
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=3.1e-42 Score=330.02 Aligned_cols=318 Identities=23% Similarity=0.241 Sum_probs=251.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHH---HHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKK---ARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.|++||||||||||++|+++|+++|++|++++|..+........ ..........+.++.+|+++.+.+.+.++..++
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~ 80 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 80 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence 37899999999999999999999999999999965422111100 011112346789999999999999999998899
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcC----CCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChH
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSD----PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLY 231 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~----~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y 231 (424)
|+|||+|+.........++...+..|+.|+.+++++++... ...++++.||+.+|+.. ..+++|+++. .|.+.|
T Consensus 81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~-~~~~~E~~~~-~p~~~Y 158 (339)
T d1n7ha_ 81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST-PPPQSETTPF-HPRSPY 158 (339)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTS-CSSBCTTSCC-CCCSHH
T ss_pred chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccC-CCCCCCCCCC-CCcchh
Confidence 99999999987777778889999999999999999987532 22367888888877654 3567887766 789999
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHH---HHHHcC-CceeEEecCCCCccccccccHHHHH
Q 042406 232 AATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFT---RDIIRG-KRITVYEAPDGASVARDFTYIDDIV 307 (424)
Q Consensus 232 ~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~i~v~Dva 307 (424)
+.+|+++|.++..+.+.++++++++||++||||....+.....+. .....+ ....++ +++.+.+||+|++|+|
T Consensus 159 ~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~---g~~~~~rd~~~v~D~a 235 (339)
T d1n7ha_ 159 AASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFL---GNLQASRDWGFAGDYV 235 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEE---SCTTCEEECEEHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEe---CCCCccccceeeehHH
Confidence 999999999999999999999999999999999876555443333 233334 344444 6789999999999999
Q ss_pred HHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccc---cCCCCCCcccccCChHHH
Q 042406 308 KGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVL---PLPRNGDVQFTHANISLA 384 (424)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~---~~~~~~~~~~~~~d~s~~ 384 (424)
+++..+++.+.. ..+++..+...+..++++++.+.++........ ...++.+......|++|+
T Consensus 236 ~~~~~~~~~~~~--------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Ka 301 (339)
T d1n7ha_ 236 EAMWLMLQQEKP--------------DDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKA 301 (339)
T ss_dssp HHHHHHHTSSSC--------------CEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHH
T ss_pred HHHHHHHhcCCC--------------CccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHH
Confidence 999999987652 456667778899999999999999976543221 122345666777899999
Q ss_pred HhHcCCcccCCHHHHHHHHHHHHHHHhccCC
Q 042406 385 QRELGYMPTTDLETGLKKFVRWYLSYYNSAS 415 (424)
Q Consensus 385 ~~~LG~~p~~~l~~~l~~~v~~~~~~~~~~~ 415 (424)
+++|||+|+++++|+|+++++||.+..++++
T Consensus 302 k~~LGw~P~~~le~gi~~ti~~~~~~~~~~~ 332 (339)
T d1n7ha_ 302 KEVLGWKPQVGFEKLVKMMVDEDLELAKREK 332 (339)
T ss_dssp HHHHCCCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcCCCHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999998876644
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=1.4e-41 Score=324.88 Aligned_cols=311 Identities=23% Similarity=0.362 Sum_probs=250.5
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMH 160 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~ 160 (424)
+||||||+||||++|+++|+++|++|+++++.......... .......+++++.+|++|.+.+.+++++++||+|||
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~---~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih 78 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNL---HWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH 78 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHH---HHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHH---HHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEe
Confidence 69999999999999999999999999999875443222111 111234689999999999999999999999999999
Q ss_pred cccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCC---------------CCCCC
Q 042406 161 LAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSE---------------KDRTD 225 (424)
Q Consensus 161 ~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e---------------~~~~~ 225 (424)
+|+.........++...+++|+.||.+|+++|.+.+..+.|++.|+...++.....+..+ +....
T Consensus 79 ~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T d1orra_ 79 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL 158 (338)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred ecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcc
Confidence 999988777777889999999999999999999999875555555555555433222111 11122
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCC---CCcHHHHHHHHHc-----CCceeEEecCCCCccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRP---DMAYFFFTRDIIR-----GKRITVYEAPDGASVA 297 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 297 (424)
.|.+.|+.+|...|.+.....+.+++...++|+..+|++.... ....+.++..++. ++++.++ +++++.
T Consensus 159 ~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~ 235 (338)
T d1orra_ 159 DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTIS---GNGKQV 235 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEE---SSSCCE
T ss_pred ccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEe---CCCcee
Confidence 5678999999999999999999999999999999999876533 3345556655553 6778877 788999
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCC--CCcccHHHHHHHHHHHhCcccccccccCCCCCCcc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGN--TTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQ 375 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~ 375 (424)
++|+|++|++++++.+++..... .+++|++.. +..+++.|+++.+.+.++.+.++...+. ++.+..
T Consensus 236 r~~~~v~D~~~~~~~~l~~~~~~-----------~~~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~ 303 (338)
T d1orra_ 236 RDVLHAEDMISLYFTALANVSKI-----------RGNAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPV-RESDQR 303 (338)
T ss_dssp EECEEHHHHHHHHHHHHHTHHHH-----------TTCEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECC-CSSCCS
T ss_pred EeeecccchhhHHHHHHhccccc-----------cCccccccccccccccHHHHHHHHHHHHCCCceeEeCCC-CCCCcC
Confidence 99999999999999999876543 237899854 5678999999999999998888776654 355666
Q ss_pred cccCChHHHHhHcCCcccCCHHHHHHHHHHHHHH
Q 042406 376 FTHANISLAQRELGYMPTTDLETGLKKFVRWYLS 409 (424)
Q Consensus 376 ~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~~~~~ 409 (424)
....|++|++++|||+|+++++|+|+++++|+++
T Consensus 304 ~~~~d~~k~~~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 304 VFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp EECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred eeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHc
Confidence 6778999999999999999999999999999985
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-41 Score=321.41 Aligned_cols=299 Identities=20% Similarity=0.328 Sum_probs=243.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
.|+|||||||||||++|+++|+++|+.|+++++.. ++|+.|.+.+.++++..++|.|
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~d~v 58 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLLDSRAVHDFFASERIDQV 58 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------------TCCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch-----------------------hccccCHHHHHHHHhhcCCCEE
Confidence 46899999999999999999999999998876521 1599999999999998889999
Q ss_pred EEcccccCch-hhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC----CCCChHHH
Q 042406 159 MHLAAQAGVR-YAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD----QPASLYAA 233 (424)
Q Consensus 159 i~~Ag~~~~~-~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~----~~~~~Y~~ 233 (424)
+|+|+..+.. ....++...+.+|+.||.+++++|++.+++ +|||+||.++||.....+++|+.+.. .+.+.|+.
T Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~-~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~ 137 (315)
T d1e6ua_ 59 YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAI 137 (315)
T ss_dssp EECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHH
T ss_pred EEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHH
Confidence 9999876542 334566778999999999999999999986 99999999999987777777765332 23457999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCC----c-----HHHHHHHHHcCCceeEEecCCCCccccccccHH
Q 042406 234 TKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDM----A-----YFFFTRDIIRGKRITVYEAPDGASVARDFTYID 304 (424)
Q Consensus 234 sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 304 (424)
||.++|.++..+++++|++++++||++||||++..+. . ..........+..+.++ +++...++|+|++
T Consensus 138 sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~~~v~ 214 (315)
T d1e6ua_ 138 AKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVW---GSGTPMREFLHVD 214 (315)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEE---SCSCCEECEEEHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEc---CCCceEEEEEEee
Confidence 9999999999999999999999999999999765432 1 12234455567777776 6788999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHH
Q 042406 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLA 384 (424)
Q Consensus 305 Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~ 384 (424)
|++.++..+++........ ........++++.+...++.++++.+.+.++.+..+.+.+. ++.+......|++|+
T Consensus 215 d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~-~~~~~~~~~~d~sk~ 289 (315)
T d1e6ua_ 215 DMAAASIHVMELAHEVWLE----NTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS-KPDGTPRKLLDVTRL 289 (315)
T ss_dssp HHHHHHHHHHHSCHHHHHH----TSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT-SCCCCSBCCBCCHHH
T ss_pred hhHHHHHHhhhhccccccc----cccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCC-CCCCCceeccCHHHH
Confidence 9999999988665432100 00122368999999999999999999999999887766554 355566667899999
Q ss_pred HhHcCCcccCCHHHHHHHHHHHHHHH
Q 042406 385 QRELGYMPTTDLETGLKKFVRWYLSY 410 (424)
Q Consensus 385 ~~~LG~~p~~~l~~~l~~~v~~~~~~ 410 (424)
+ +|||+|+++++|+|+++++||+++
T Consensus 290 k-~Lg~~p~~~l~e~i~~ti~w~~~N 314 (315)
T d1e6ua_ 290 H-QLGWYHEISLEAGLASTYQWFLEN 314 (315)
T ss_dssp H-HTTCCCCCCHHHHHHHHHHHHHHT
T ss_pred H-HcCCCCCCCHHHHHHHHHHHHHHc
Confidence 6 699999999999999999999975
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=2e-41 Score=326.51 Aligned_cols=321 Identities=22% Similarity=0.260 Sum_probs=254.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++|+||||||+||||++|+++|+++|++|++++|+.+.........+ ...+++++.+|++|++.+.++++...+|+
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~----~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~ 82 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR----VADGMQSEIGDIRDQNKLLESIREFQPEI 82 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTT----TTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhh----cccCCeEEEeeccChHhhhhhhhhchhhh
Confidence 67999999999999999999999999999999997765443322221 23579999999999999999999999999
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC-CCCCCCCCCCCCChHHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKV-PFSEKDRTDQPASLYAATKK 236 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~-~~~e~~~~~~~~~~Y~~sK~ 236 (424)
|+|+|+......+..++...+.+|+.|+.++++++++.+....+++.||+.++...... +..+++ +..|.+.|+.+|.
T Consensus 83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~p~~~y~~~k~ 161 (356)
T d1rkxa_ 83 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENE-AMGGYDPYSNSKG 161 (356)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTS-CBCCSSHHHHHHH
T ss_pred hhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccccccccccccccccccccc-ccCCCCccccccc
Confidence 99999998877778889999999999999999999998876567777766666544433 344444 4478899999999
Q ss_pred HHHHHHHHHHHH---------hCCcEEEEEeccccCCCCCC-CCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHH
Q 042406 237 AGEAIAHAYNHI---------YGLSITGLRFFTVYGPWGRP-DMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDI 306 (424)
Q Consensus 237 ~~e~~~~~~~~~---------~~i~~~~vrp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dv 306 (424)
..|..+..+..+ .++.++++||+++|||++.. +.+++.++..+..+.++. + +.+++.++++|++|+
T Consensus 162 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~~-~---~~~~~~~~~~~v~D~ 237 (356)
T d1rkxa_ 162 CAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVI-I---RNPHAIRPWQHVLEP 237 (356)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEE-C---SCTTCEECCEETHHH
T ss_pred cchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCceE-E---eeccccccccccccc
Confidence 999998887653 37899999999999998643 456667777776666554 3 678899999999999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCCCcccccCChHHHHh
Q 042406 307 VKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNGDVQFTHANISLAQR 386 (424)
Q Consensus 307 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~s~~~~ 386 (424)
|.++..++.......... ..+..++...+..+++.++++.+.+.++....+......++.+......|++|+++
T Consensus 238 ~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~ 311 (356)
T d1rkxa_ 238 LSGYLLLAQKLYTDGAEY------AEGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKM 311 (356)
T ss_dssp HHHHHHHHHHHHHTCGGG------CSEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHH
T ss_pred cchhhhhhhhhccccccc------ccccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHH
Confidence 999999888765321100 11134444556789999999999999998887766655556677778899999999
Q ss_pred HcCCcccCCHHHHHHHHHHHHHHHhcc
Q 042406 387 ELGYMPTTDLETGLKKFVRWYLSYYNS 413 (424)
Q Consensus 387 ~LG~~p~~~l~~~l~~~v~~~~~~~~~ 413 (424)
+|||+|+++++++|+++++||++..+.
T Consensus 312 ~LGw~P~~~l~egi~~ti~wyk~~~~~ 338 (356)
T d1rkxa_ 312 QLGWHPRWNLNTTLEYIVGWHKNWLSG 338 (356)
T ss_dssp HHCCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCcCCCHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999987664
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=9.3e-38 Score=290.55 Aligned_cols=275 Identities=19% Similarity=0.183 Sum_probs=238.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|||||||||||++|+++|.++|++|++++|.. +|++|.+++++++++.++|+||
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~------------------------~D~~d~~~~~~~l~~~~~d~vi 57 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD------------------------LDITNVLAVNKFFNEKKPNVVI 57 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT------------------------CCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh------------------------ccCCCHHHHHHHHHHcCCCEEE
Confidence 6799999999999999999999999999999831 4999999999999998999999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|+|+......+...++.....|+..+.++++.+..... .++++||..+|+.....+..|.+++ .+...|+.+|..+|
T Consensus 58 h~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~~~ss~~v~~~~~~~~~~e~~~~-~~~~~~~~~k~~~e 134 (281)
T d1vl0a_ 58 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQISTDYVFDGEAKEPITEFDEV-NPQSAYGKTKLEGE 134 (281)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCSCCSSCBCTTSCC-CCCSHHHHHHHHHH
T ss_pred eeccccccccccccchhhcccccccccccccccccccc--cccccccceeeeccccccccccccc-cchhhhhhhhhHHH
Confidence 99999888777888889999999999999999988764 7999999999998888889988876 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
.++++. +.+++++||++||||+.. +...++..+..++.+.++ ++..++++|++|+++++..+++....
T Consensus 135 ~~~~~~----~~~~~i~R~~~vyG~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~D~~~~~~~~~~~~~~ 202 (281)
T d1vl0a_ 135 NFVKAL----NPKYYIVRTAWLYGDGNN---FVKTMINLGKTHDELKVV-----HDQVGTPTSTVDLARVVLKVIDEKNY 202 (281)
T ss_dssp HHHHHH----CSSEEEEEECSEESSSSC---HHHHHHHHHHHCSEEEEE-----SSCEECCEEHHHHHHHHHHHHHHTCC
T ss_pred HHHHHh----CCCccccceeEEeCCCcc---cccchhhhhccCCceeec-----CCceeccchhhhhhhhhhhhhhhccc
Confidence 887654 889999999999999653 566778888888888775 36889999999999999999988653
Q ss_pred cCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCC----CCcccccCChHHHHhHcCCcccCC
Q 042406 320 STGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRN----GDVQFTHANISLAQRELGYMPTTD 395 (424)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~----~~~~~~~~d~s~~~~~LG~~p~~~ 395 (424)
++||+++++.+|+.|+++.+.+.+|.+..+..++...- ..+.+..+|++|+++.|||+|+ +
T Consensus 203 --------------g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~-~ 267 (281)
T d1vl0a_ 203 --------------GTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-E 267 (281)
T ss_dssp --------------EEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-B
T ss_pred --------------CceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCC-C
Confidence 68999999999999999999999999887665432111 1123345799999999999998 8
Q ss_pred HHHHHHHHHHHHH
Q 042406 396 LETGLKKFVRWYL 408 (424)
Q Consensus 396 l~~~l~~~v~~~~ 408 (424)
++|+|+++++|++
T Consensus 268 ~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 268 WKESLKEYIDLLQ 280 (281)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999985
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=2.9e-37 Score=295.98 Aligned_cols=306 Identities=19% Similarity=0.168 Sum_probs=221.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.+||+||||||+||||++|+++|+++|++|+++.|+.+..... ..............++.+|+.|.+++.+++.++ |
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~ 85 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANL-QKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA--A 85 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC--S
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHH-HHhhhccccccccEEEeccccchhhhhhhcccc--h
Confidence 4699999999999999999999999999999999965432221 111112222344566889999999999999877 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCC---CCC-CCCC-----------
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNK---KVP-FSEK----------- 221 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~---~~~-~~e~----------- 221 (424)
+|+|+|+.... ..++...+..|+.||.+++++|.+.+..++||++||+++++... ... .+|+
T Consensus 86 ~v~~~a~~~~~---~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 162 (342)
T d1y1pa1 86 GVAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAK 162 (342)
T ss_dssp EEEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHH
T ss_pred hhhhhcccccc---cccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccccc
Confidence 99999997553 34567788999999999999999875445999999986544211 111 1111
Q ss_pred ----CCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCC---CCcHHHHHHHHHcCCceeEEecCC
Q 042406 222 ----DRTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRP---DMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 222 ----~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
..+..|.+.|+.+|.++|.+++.+.+.+ +++++++||+.+|||...+ ......++..+..++.....
T Consensus 163 ~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~---- 238 (342)
T d1y1pa1 163 TLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL---- 238 (342)
T ss_dssp HSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH----
T ss_pred cccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCccc----
Confidence 1122456789999999999999998876 5788999999999986432 33566788888888766553
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCCCCC
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLPRNG 372 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~ 372 (424)
.++..++|+|++|+|++++.+++++... +.|++++++.+++.|++++|.+.++........+.....
T Consensus 239 ~~~~~~~~v~v~Dva~~~i~~l~~~~~~-------------g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~~~~~ 305 (342)
T d1y1pa1 239 ALMPPQYYVSAVDIGLLHLGCLVLPQIE-------------RRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQD 305 (342)
T ss_dssp HTCCSEEEEEHHHHHHHHHHHHHCTTCC-------------SCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred CCccceeeeeHHHHHHHHHHhhcCcccc-------------ceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCccCcc
Confidence 3556689999999999999999876532 446677888999999999999998532211111111111
Q ss_pred CcccccCChHHHHhHcCCcccCCHHHHHHHHHH
Q 042406 373 DVQFTHANISLAQRELGYMPTTDLETGLKKFVR 405 (424)
Q Consensus 373 ~~~~~~~d~s~~~~~LG~~p~~~l~~~l~~~v~ 405 (424)
........+.+..+.|||.+.+++||+|+++++
T Consensus 306 ~~~~~~~~s~~~~k~lg~~~~~~lee~i~d~I~ 338 (342)
T d1y1pa1 306 LSKFDTAPSLEILKSLGRPGWRSIEESIKDLVG 338 (342)
T ss_dssp CCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHC
T ss_pred cccccchHHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence 111111223455567999998899999999875
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-34 Score=271.85 Aligned_cols=293 Identities=23% Similarity=0.353 Sum_probs=204.9
Q ss_pred EEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH-HHHHhhc---cCcc
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL-LDKIFNV---VAFT 156 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-v~~~~~~---~~~d 156 (424)
||||||+||||++|+++|+++|+ +|+++++........ . .. .. ..+|..+.+. ....+.. ..++
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~-~-~~----~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFV-N-LV----DL-----NIADYMDKEDFLIQIMAGEEFGDVE 70 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGH-H-HH----TS-----CCSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhh-c-cc----cc-----chhhhccchHHHHHHhhhhcccchh
Confidence 89999999999999999999995 799998654422111 1 10 01 1123333333 2223321 1569
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKK 236 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~ 236 (424)
+|+|+|+..... ..+.+.....|+.++.+++++++..++ ++++.||+.+|+........++.+ ..|.+.|+.+|.
T Consensus 71 ~i~~~aa~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~i--~~v~~ss~~~~~~~~~~~~~~~~~-~~~~~~Y~~~K~ 145 (307)
T d1eq2a_ 71 AIFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREY-EKPLNVYGYSKF 145 (307)
T ss_dssp EEEECCSCCCTT--CCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGTTCCSCBCSSGGG-CCCSSHHHHHHH
T ss_pred hhhhhccccccc--ccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccc
Confidence 999999875433 445677888999999999999999987 588888888887655544444443 378899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCC----CcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHH
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPD----MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLA 312 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~ 312 (424)
++|.+++.+++.++++++++||+++|||+...+ .....+...+..++...++. ++++..++|+|++|+++++..
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~r~~~~v~d~~~~~~~ 223 (307)
T d1eq2a_ 146 LFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFE--GSENFKRDFVYVGDVADVNLW 223 (307)
T ss_dssp HHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC---------------CBCEEEHHHHHHHHHH
T ss_pred hhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeec--CccceeeeeeecccHHHHHHH
Confidence 999999999999999999999999999976433 44566777888887766543 577889999999999999999
Q ss_pred HhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccccCC---CCCCcccccCChHHHHhHcC
Q 042406 313 GLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLPLP---RNGDVQFTHANISLAQRELG 389 (424)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~---~~~~~~~~~~d~s~~~~~LG 389 (424)
+++.... +.||+++++..|+.|+++++.+..+. ..+...+.+ ..........|++|+++.+|
T Consensus 224 ~~~~~~~--------------~~~~~~~~~~~si~~i~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~ 288 (307)
T d1eq2a_ 224 FLENGVS--------------GIFNLGTGRAESFQAVADATLAYHKK-GQIEYIPFPDKLKGRYQAFTQADLTNLRAAGY 288 (307)
T ss_dssp HHHHCCC--------------EEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHHTTC
T ss_pred Hhhhccc--------------cccccccccchhHHHHHHHHHHhcCC-CCeeEeeCCccCCCCCceeeecCHHHHHHHHC
Confidence 8887542 68999999999999999999887653 233333322 12233445679999999999
Q ss_pred CcccCCHHHHHHHHHHHH
Q 042406 390 YMPTTDLETGLKKFVRWY 407 (424)
Q Consensus 390 ~~p~~~l~~~l~~~v~~~ 407 (424)
|+|.++++|+|+++++|+
T Consensus 289 ~~p~~sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 289 DKPFKTVAEGVTEYMAWL 306 (307)
T ss_dssp CCCCCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 999999999999999996
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.7e-34 Score=267.22 Aligned_cols=285 Identities=17% Similarity=0.171 Sum_probs=223.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+||||||+||||++|++.|.++|+. +.+++.... +.+|++|.+.+++++++.+||+||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~-v~~~~~~~~--------------------~~~Dl~~~~~~~~~i~~~~~D~Vi 59 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNL-IALDVHSKE--------------------FCGDFSNPKGVAETVRKLRPDVIV 59 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEE-EEECTTCSS--------------------SCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCE-EEEECCCcc--------------------ccCcCCCHHHHHHHHHHcCCCEEE
Confidence 78999999999999999999999874 455553211 246999999999999999999999
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGE 239 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 239 (424)
|+||...+..+..++...+.+|+.++.++++++++.+. +++++||+.+|+.....++.|++++ .|.+.|+.+|.++|
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~~ss~~~~~~~~~~~~~E~~~~-~p~~~y~~~k~~~e 136 (298)
T d1n2sa_ 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYSTDYVFPGTGDIPWQETDAT-SPLNVYGKTKLAGE 136 (298)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEEEGGGSCCCTTCCBCTTSCC-CCSSHHHHHHHHHH
T ss_pred EecccccccccccCccccccccccccccchhhhhcccc--ccccccccccccCCCCCCCcccccc-CCCchHhhhhhhhh
Confidence 99999888888889999999999999999999998875 7999999999998888889998876 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 240 AIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 240 ~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
.++... ..+..++|++..|+..+.. ....+...+..+..+... ++..++++|+.|+++++..+++....
T Consensus 137 ~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~i~~~~~ 205 (298)
T d1n2sa_ 137 KALQDN----CPKHLIFRTSWVYAGKGNN--FAKTMLRLAKERQTLSVI-----NDQYGAPTGAELLADCTAHAIRVALN 205 (298)
T ss_dssp HHHHHH----CSSEEEEEECSEECSSSCC--HHHHHHHHHHHCSEEEEE-----CSCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred hhHHhh----hcccccccccceeeccCCc--cchhhhhhhcccceeecc-----cceeecccccchHHHHHHHHHhhhhc
Confidence 887665 4456777777766543322 344556666677776664 45678999999999999988765432
Q ss_pred cCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCcccccccc----cCCCC------CCcccccCChHHHHhHcC
Q 042406 320 STGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVL----PLPRN------GDVQFTHANISLAQRELG 389 (424)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~----~~~~~------~~~~~~~~d~s~~~~~LG 389 (424)
.. ..+++||+++++.++..|+++.+.+..+........ +.+.. ....+..+|++|+++.||
T Consensus 206 ~~---------~~~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~ 276 (298)
T d1n2sa_ 206 KP---------EVAGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFD 276 (298)
T ss_dssp CG---------GGCEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHT
T ss_pred cc---------cccccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHC
Confidence 21 123899999999999999999998877543221111 10100 011234689999999999
Q ss_pred CcccCCHHHHHHHHHHHHHH
Q 042406 390 YMPTTDLETGLKKFVRWYLS 409 (424)
Q Consensus 390 ~~p~~~l~~~l~~~v~~~~~ 409 (424)
|+|+ +++++|+++++++..
T Consensus 277 ~~~~-~~~~gl~~~i~~~~~ 295 (298)
T d1n2sa_ 277 LILP-QWELGVKRMLTEMFT 295 (298)
T ss_dssp CCCC-BHHHHHHHHHHHHHS
T ss_pred CCCC-cHHHHHHHHHHHHHh
Confidence 9998 899999999998864
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.95 E-value=4.3e-28 Score=226.46 Aligned_cols=243 Identities=17% Similarity=0.148 Sum_probs=177.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+.|+|||||||||||++++++|+++|++|++++|+...................+++++.+|+.+.+.+.+.++.. +.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~ 79 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV--DV 79 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC--SE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc--ee
Confidence 4578999999999999999999999999999999876654443333344445678999999999999999999977 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKA 237 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~ 237 (424)
|+|+++... ..++.+++++++..+.. ++++.||........ . ...+...+...+..
T Consensus 80 vi~~~~~~~---------------~~~~~~~~~a~~~~~~~-~~~~~s~~~~~~~~~-------~-~~~~~~~~~~~~~~ 135 (307)
T d1qyca_ 80 VISTVGSLQ---------------IESQVNIIKAIKEVGTV-KRFFPSEFGNDVDNV-------H-AVEPAKSVFEVKAK 135 (307)
T ss_dssp EEECCCGGG---------------SGGGHHHHHHHHHHCCC-SEEECSCCSSCTTSC-------C-CCTTHHHHHHHHHH
T ss_pred eeecccccc---------------cchhhHHHHHHHHhccc-cceeeeccccccccc-------c-cccccccccccccc
Confidence 999987532 23456788889888876 788888754433211 1 11222334444444
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 238 ~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
.+ ......+++++++||+++||+....- ..+.....++....++ +.+++.++|+|++|+|++++.+++.+
T Consensus 136 ~~----~~~~~~~~~~~i~r~~~v~g~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~~~~~~l~~~ 205 (307)
T d1qyca_ 136 VR----RAIEAEGIPYTYVSSNCFAGYFLRSL---AQAGLTAPPRDKVVIL---GDGNARVVFVKEEDIGTFTIKAVDDP 205 (307)
T ss_dssp HH----HHHHHHTCCBEEEECCEEHHHHTTTT---TCTTCSSCCSSEEEEE---TTSCCEEEEECHHHHHHHHHTTSSCG
T ss_pred cc----chhhccCCCceecccceecCCCccch---hhhhhhhhhcccceee---ecccccccCCcHHHHHHHHHHHhcCh
Confidence 44 44445599999999999999754321 1122233445555555 67899999999999999999999877
Q ss_pred cccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccccccc
Q 042406 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP 367 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 367 (424)
.... +..|++++++.+|+.|+++.+.+.+|.+.+....|
T Consensus 206 ~~~~-----------~~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~ 244 (307)
T d1qyca_ 206 RTLN-----------KTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244 (307)
T ss_dssp GGTT-----------EEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred hhcC-----------ceeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECC
Confidence 5321 14566777899999999999999999887765543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.95 E-value=8.4e-28 Score=225.64 Aligned_cols=248 Identities=13% Similarity=0.116 Sum_probs=180.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+.++|||||||||||++|+++|+++|++|++++|+........ ..........+++++++|+.|.+.+.+.+.+. ++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~-~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~--~~ 78 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDK-VQMLLYFKQLGAKLIEASLDDHQRLVDALKQV--DV 78 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHH-HHHHHHHHTTTCEEECCCSSCHHHHHHHHTTC--SE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhH-HHHHhhhccCCcEEEEeecccchhhhhhccCc--ch
Confidence 3467999999999999999999999999999999765433322 22223345578999999999999999999977 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKA 237 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~ 237 (424)
++++++.... ..|..++.+++++|.+.+.. ++++.||.+++..... . +..+...|..+|.+
T Consensus 79 ~~~~~~~~~~-----------~~~~~~~~~~l~~a~~~~~~-~~v~~Ss~g~~~~~~~------~-~~~~~~~~~~~~~~ 139 (312)
T d1qyda_ 79 VISALAGGVL-----------SHHILEQLKLVEAIKEAGNI-KRFLPSEFGMDPDIME------H-ALQPGSITFIDKRK 139 (312)
T ss_dssp EEECCCCSSS-----------STTTTTHHHHHHHHHHSCCC-SEEECSCCSSCTTSCC------C-CCSSTTHHHHHHHH
T ss_pred hhhhhhhccc-----------ccchhhhhHHHHHHHHhcCC-cEEEEeeccccCCCcc------c-ccchhhhhhHHHHH
Confidence 9999876432 13555677888999888766 7888888666543221 1 12444566666666
Q ss_pred HHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 238 GEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 238 ~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
++. +....+++++++||+.+||+....... .+......+..+.++ ++++..++|+|++|+|++++.+++++
T Consensus 140 ~~~----~~~~~~~~~~i~r~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~l~~~ 210 (312)
T d1qyda_ 140 VRR----AIEAASIPYTYVSSNMFAGYFAGSLAQ--LDGHMMPPRDKVLIY---GDGNVKGIWVDEDDVGTYTIKSIDDP 210 (312)
T ss_dssp HHH----HHHHTTCCBCEEECCEEHHHHTTTSSC--TTCCSSCCSSEECCB---TTSCSEEEEECHHHHHHHHHHHTTCG
T ss_pred HHH----hhcccccceEEeccceeecCCccchhh--HHHHhhhcccccccc---cccccccceeeHHHHHHHHHHHhcCc
Confidence 555 444559999999999999975432110 111112234445544 68899999999999999999999887
Q ss_pred cccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccccccc
Q 042406 318 KKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP 367 (424)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 367 (424)
.... +..|++++++.+|++|+++.+++.+|.+.+....|
T Consensus 211 ~~~~-----------~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~ 249 (312)
T d1qyda_ 211 QTLN-----------KTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 249 (312)
T ss_dssp GGSS-----------SEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred cccC-----------ceEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECC
Confidence 5321 13566766788999999999999999988766554
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.9e-26 Score=203.88 Aligned_cols=193 Identities=16% Similarity=0.020 Sum_probs=151.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+.+|+|+||||||+||++++++|+++|++|++++|+.++. ......+++++.+|++|.+++.++++++ |
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~---------~~~~~~~~~~~~gD~~d~~~l~~al~~~--d 69 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL---------PSEGPRPAHVVVGDVLQAADVDKTVAGQ--D 69 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS---------CSSSCCCSEEEESCTTSHHHHHHHHTTC--S
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc---------ccccccccccccccccchhhHHHHhcCC--C
Confidence 4688999999999999999999999999999999965432 2223467999999999999999999987 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKK 236 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~ 236 (424)
+|||++|..... ....++..++.++++++++++++ +||++||.++++..... ......|...|.
T Consensus 70 ~vi~~~g~~~~~-------~~~~~~~~~~~~l~~aa~~~~v~-r~i~~ss~~~~~~~~~~--------~~~~~~~~~~~~ 133 (205)
T d1hdoa_ 70 AVIVLLGTRNDL-------SPTTVMSEGARNIVAAMKAHGVD-KVVACTSAFLLWDPTKV--------PPRLQAVTDDHI 133 (205)
T ss_dssp EEEECCCCTTCC-------SCCCHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCTTCS--------CGGGHHHHHHHH
T ss_pred EEEEEeccCCch-------hhhhhhHHHHHHHHHHHHhcCCC-eEEEEeeeeccCCCccc--------cccccccchHHH
Confidence 999999864321 11246778999999999999986 99999999988753321 122356888999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhh
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDT 316 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~ 316 (424)
.+|+++++ .|+++++|||+.+++.... +. ..+. .+++....+|+++|+|++++.++++
T Consensus 134 ~~e~~l~~----~~~~~tiirp~~~~~~~~~--------------~~-~~~~---~~~~~~~~~i~~~DvA~~~~~~l~~ 191 (205)
T d1hdoa_ 134 RMHKVLRE----SGLKYVAVMPPHIGDQPLT--------------GA-YTVT---LDGRGPSRVISKHDLGHFMLRCLTT 191 (205)
T ss_dssp HHHHHHHH----TCSEEEEECCSEEECCCCC--------------SC-CEEE---SSSCSSCSEEEHHHHHHHHHHTTSC
T ss_pred HHHHHHHh----cCCceEEEecceecCCCCc--------------cc-EEEe---eCCCCCCCcCCHHHHHHHHHHHhCC
Confidence 98887654 4999999999999874322 11 2222 3456667899999999999999987
Q ss_pred cc
Q 042406 317 AK 318 (424)
Q Consensus 317 ~~ 318 (424)
+.
T Consensus 192 ~~ 193 (205)
T d1hdoa_ 192 DE 193 (205)
T ss_dssp ST
T ss_pred CC
Confidence 65
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.94 E-value=4.8e-26 Score=207.13 Aligned_cols=231 Identities=16% Similarity=0.096 Sum_probs=167.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||+++||||+++||+++++.|+++|++|++.+|+.+...+...+.... ...++.++.+|++|+++++++++.+
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK--YGVETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--HCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH--hCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999876555444333221 2457889999999999999988776
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.++..+.+++. +.+.+ ++|++||......
T Consensus 80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~Ii~i~S~~~~~~---------- 148 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNP-SIINIGSLTVEEV---------- 148 (251)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSC-EEEEECCGGGTCC----------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccc-cccccccchhccc----------
Confidence 7899999999854422 233446799999999887776653 44433 8999988544211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.......|++||.+.+.+++.++.++ |+++++|.||.|-.+........+.....+....|+..
T Consensus 149 -~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R------------ 215 (251)
T d1vl8a_ 149 -TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGR------------ 215 (251)
T ss_dssp -CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSS------------
T ss_pred -cCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCCCC------------
Confidence 11234689999999999999998775 89999999999987643210000123334444333211
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+...+|+|.+++.++...... ..|+++.|.+|-
T Consensus 216 ~~~pedvA~~v~fL~S~~a~~----------itG~~i~vDGG~ 248 (251)
T d1vl8a_ 216 TGVPEDLKGVAVFLASEEAKY----------VTGQIIFVDGGW 248 (251)
T ss_dssp CBCGGGGHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred CCCHHHHHHHHHHHhCchhCC----------CcCcEEEeCcCe
Confidence 456799999999887655432 455899998764
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.94 E-value=6.3e-26 Score=207.45 Aligned_cols=232 Identities=12% Similarity=0.054 Sum_probs=167.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhh-hHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET-SLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+++||+++||||+++||++++++|+++|++|++.+|+.+...+ ..+.... ...++.++++|++|+++++++++.+
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~---~g~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKK---VGGEAIAVKGDVTVESDVINLVQSAI 80 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999997643222 2222211 2357889999999999999988765
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|++|||||...... ..++.+..+++|+.++.++.+++ ++.+.+.+||++||.+....
T Consensus 81 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~--------- 151 (261)
T d1geea_ 81 KEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIP--------- 151 (261)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC---------
T ss_pred HHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhccc---------
Confidence 7899999999865422 23334678999999987776554 45555546999999766432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
......|+.||.+.+.+++.++.++ ||++++|.||.|..|........+.....+....++.
T Consensus 152 ---~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~------------ 216 (261)
T d1geea_ 152 ---WPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMG------------ 216 (261)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTS------------
T ss_pred ---CccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCCCC------------
Confidence 1335789999999999999998775 8999999999998763211000011222333322221
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
-+...+|+|.+++.++...... ..|+++.|.+|-.+
T Consensus 217 R~~~pediA~~v~fL~S~~s~~----------itG~~i~vDGG~sl 252 (261)
T d1geea_ 217 YIGEPEEIAAVAAWLASSEASY----------VTGITLFADGGMTL 252 (261)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred CCCCHHHHHHHHHHHhCchhcC----------CcCCeEEECCCeeC
Confidence 1567899999999888655432 45589999887643
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=1.4e-25 Score=202.83 Aligned_cols=222 Identities=15% Similarity=0.135 Sum_probs=166.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.+++|+++||||+++||+++++.|+++|++|++.+|+.+..++. . ..-+++++.+|++|+++++++++.+
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~----~----~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 73 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREA----A----EAVGAHPVVMDVADPASVERGFAEALA 73 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----H----HTTTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----H----HHcCCeEEEEecCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999965433221 1 1235788999999999999988776
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||...... ..++.+..+++|+.|+.++.+++.+ .+. .+++++||.+..+.
T Consensus 74 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-~~i~~~ss~~~~~~---------- 142 (242)
T d1ulsa_ 74 HLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNP-GSIVLTASRVYLGN---------- 142 (242)
T ss_dssp HHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC-EEEEEECCGGGGCC----------
T ss_pred hcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccccc-ceeeeeccccccCC----------
Confidence 6899999999865432 2334467999999998887776543 333 26777777654432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.....|++||.+.+.+++.++.++ |+++++|.||.|-.+.... ........+....++..
T Consensus 143 ---~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~--~~~~~~~~~~~~~pl~R------------ 205 (242)
T d1ulsa_ 143 ---LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK--VPEKVREKAIAATPLGR------------ 205 (242)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS--SCHHHHHHHHHTCTTCS------------
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhc--CCHHHHHHHHhcCCCCC------------
Confidence 345789999999999999998775 8999999999998775432 12234444444433321
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
+...+|+|.+++.++...... ..|+++.+.+|..
T Consensus 206 ~~~pedia~~v~fL~S~~s~~----------itG~~i~vDGG~t 239 (242)
T d1ulsa_ 206 AGKPLEVAYAALFLLSDESSF----------ITGQVLFVDGGRT 239 (242)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred CCCHHHHHHHHHHHhchhhCC----------CCCcEEEECCCcc
Confidence 556899999999888655432 4558999988753
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.94 E-value=1.3e-25 Score=204.99 Aligned_cols=233 Identities=15% Similarity=0.127 Sum_probs=170.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||+++||||+++||+++++.|+++|++|++.+|+.+..+......... ....++.++++|++|+++++++++.+
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~-~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLET-APDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-CTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh-CCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999776555444333322 23457899999999999999888776
Q ss_pred ---CccEEEEcccccCc-h----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-R----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-~----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|+||||||+... . ...++.+..+++|+.|+.++.+++ ++.+.+ +||++||.+.+..
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G-~Ii~isS~~~~~~--------- 149 (258)
T d1iy8a_ 80 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSG-MVVNTASVGGIRG--------- 149 (258)
T ss_dssp HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSB---------
T ss_pred HhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCC-CCcccccHhhccC---------
Confidence 68999999997532 1 123344679999999988877765 344444 8999999766432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC------CCcHHHHHHHHHcCCceeEEecCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP------DMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
......|++||.+.+.+++.++.++ ||++++|.||.|..|.... ..........+....|+.
T Consensus 150 ---~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~------ 220 (258)
T d1iy8a_ 150 ---IGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSK------ 220 (258)
T ss_dssp ---CSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTC------
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCCC------
Confidence 1345889999999999999998775 8999999999997652100 000112333333332221
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
-+...+|+|.+++.++...... ..|+++.|.+|...
T Consensus 221 ------R~~~p~dvA~~v~fL~S~~s~~----------itG~~i~VDGG~sa 256 (258)
T d1iy8a_ 221 ------RYGEAPEIAAVVAFLLSDDASY----------VNATVVPIDGGQSA 256 (258)
T ss_dssp ------SCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTTTT
T ss_pred ------CCcCHHHHHHHHHHHhCchhcC----------CcCceEEcCcchhc
Confidence 1567899999999888655432 45589999988653
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.7e-26 Score=208.22 Aligned_cols=200 Identities=12% Similarity=0.057 Sum_probs=155.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
+++|+|||||||||||++|+++|+++|. +|++++|++..... .....+....+|+.+.+.+.+++++.
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~---------~~~~~i~~~~~D~~~~~~~~~~~~~~- 81 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE---------EAYKNVNQEVVDFEKLDDYASAFQGH- 81 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS---------GGGGGCEEEECCGGGGGGGGGGGSSC-
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc---------cccceeeeeeeccccccccccccccc-
Confidence 5678999999999999999999999994 89999996543221 12356788889999999999999877
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHH
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAAT 234 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~s 234 (424)
|++||++|... ...+...+..+|+.++.+++++|++.+++ +||++||.++++ .+.+.|+.+
T Consensus 82 -d~vi~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~v~-~fi~~Ss~~~~~--------------~~~~~Y~~~ 142 (232)
T d2bkaa1 82 -DVGFCCLGTTR---GKAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSSKGADK--------------SSNFLYLQV 142 (232)
T ss_dssp -SEEEECCCCCH---HHHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHH
T ss_pred -ccccccccccc---cccchhhhhhhcccccceeeecccccCcc-ccccCCcccccc--------------CccchhHHH
Confidence 99999998643 22344678899999999999999999986 999999988865 334789999
Q ss_pred HHHHHHHHHHHHHHhCC-cEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHH
Q 042406 235 KKAGEAIAHAYNHIYGL-SITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAG 313 (424)
Q Consensus 235 K~~~e~~~~~~~~~~~i-~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~ 313 (424)
|..+|..+.++ ++ +++|+||+.+||++.... ....+...+.... .........|+++|+|++++.+
T Consensus 143 K~~~E~~l~~~----~~~~~~IlRP~~i~G~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~I~~~dvA~a~i~~ 209 (232)
T d2bkaa1 143 KGEVEAKVEEL----KFDRYSVFRPGVLLCDRQESR-PGEWLVRKFFGSL--------PDSWASGHSVPVVTVVRAMLNN 209 (232)
T ss_dssp HHHHHHHHHTT----CCSEEEEEECCEEECTTGGGS-HHHHHHHHHHCSC--------CTTGGGGTEEEHHHHHHHHHHH
T ss_pred HHHhhhccccc----cccceEEecCceeecCCCcCc-HHHHHHHHHhhcc--------CCcccCCCeEEHHHHHHHHHHH
Confidence 99999877664 66 489999999999865532 2223334443321 2344455689999999999988
Q ss_pred hhhcc
Q 042406 314 LDTAK 318 (424)
Q Consensus 314 ~~~~~ 318 (424)
+..+.
T Consensus 210 ~~~~~ 214 (232)
T d2bkaa1 210 VVRPR 214 (232)
T ss_dssp HTSCC
T ss_pred HhcCc
Confidence 87765
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.5e-25 Score=202.99 Aligned_cols=226 Identities=17% Similarity=0.169 Sum_probs=166.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-C
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-A 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~ 154 (424)
.++||++|||||+++||+++++.|+++|++|++.+|+.+..++.. . ...++.++.+|++|.+++++++++. +
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~----~---~~~~~~~~~~Dv~d~~~v~~~~~~~g~ 76 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLV----R---ECPGIEPVCVDLGDWEATERALGSVGP 76 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----H---HSTTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH----H---hcCCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 479999999999999999999999999999999999754433221 1 1246889999999999999999887 7
Q ss_pred ccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|+||||||...... ..++.+..+++|+.++..+.+++.+ .+...++|++||....... .
T Consensus 77 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------------~ 144 (244)
T d1pr9a_ 77 VDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV------------T 144 (244)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------T
T ss_pred ceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccc------------c
Confidence 899999999865432 2334467999999998777665432 2223489999997665421 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
....|+.||.+.+.+++.++.++ |+++++|.||.|..|.......-......+....|+. -+...
T Consensus 145 ~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~------------R~~~p 212 (244)
T d1pr9a_ 145 NHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLG------------KFAEV 212 (244)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCTTC------------SCBCH
T ss_pred chhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCCCC------------CCcCH
Confidence 45789999999999999999775 8999999999998763211111112334444433321 26778
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+|+|.+++.++...... ..|+++.+.+|-
T Consensus 213 eevA~~v~fL~S~~a~~----------itG~~i~vDGG~ 241 (244)
T d1pr9a_ 213 EHVVNAILFLLSDRSGM----------TTGSTLPVEGGF 241 (244)
T ss_dssp HHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred HHHHHHHHHHhCchhCC----------cCCcEEEECccH
Confidence 99999999888655432 455899998763
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=6.3e-26 Score=205.20 Aligned_cols=226 Identities=19% Similarity=0.152 Sum_probs=165.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-C
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-A 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~ 154 (424)
+++||++|||||+++||+++++.|+++|++|++.+|+.+...+. .. ...++.++.+|++|.+++++++++. +
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~----~~---~~~~~~~~~~Dv~~~~~v~~~~~~~g~ 74 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSL----AK---ECPGIEPVCVDLGDWDATEKALGGIGP 74 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH----HH---HSTTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH----HH---hcCCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 47899999999999999999999999999999999975433222 11 2246889999999999999999987 7
Q ss_pred ccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|+||||||...... ..++.+..+++|+.++..+.+++. +.+...++|++||...+... .
T Consensus 75 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------~ 142 (242)
T d1cyda_ 75 VDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF------------P 142 (242)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------T
T ss_pred CeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccC------------C
Confidence 899999999865432 223345789999999888877543 22333489999997665421 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI 303 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v 303 (424)
....|+++|.+.+.+++.++.++ |+++++|.||.|..|..........+...+....|+. -+...
T Consensus 143 ~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~------------R~~~p 210 (242)
T d1cyda_ 143 NLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLR------------KFAEV 210 (242)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTS------------SCBCH
T ss_pred ccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcCCCC------------CCcCH
Confidence 35789999999999999999775 8999999999998752110000012333333322211 26678
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 304 DDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 304 ~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+|+|.+++.++...... ..|+++.|.+|-
T Consensus 211 eeva~~v~fL~S~~s~~----------itG~~i~vDGG~ 239 (242)
T d1cyda_ 211 EDVVNSILFLLSDRSAS----------TSGGGILVDAGY 239 (242)
T ss_dssp HHHHHHHHHHHSGGGTT----------CCSSEEEESTTG
T ss_pred HHHHHHHHHHhCchhcC----------cCCceEEeCcch
Confidence 99999999888654432 455899998764
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.1e-25 Score=205.22 Aligned_cols=228 Identities=14% Similarity=0.166 Sum_probs=170.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.++||+++||||+++||++++++|+++|++|++.+|+.+..++...+... ...++.++++|++|+++++++++.+
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~---~g~~~~~~~~Dvs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999977655554444332 2357899999999999999888765
Q ss_pred ---CccEEEEcccccCchh---hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY---AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~---~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|++|||||...... ..++.+..+++|+.|+.++.+++ ++.+.. ++|++||...+...
T Consensus 85 ~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g-~Ii~isS~~~~~~~---------- 153 (255)
T d1fmca_ 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGG-VILTITSMAAENKN---------- 153 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTCCC----------
T ss_pred HcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccccc-ccccccccchhccc----------
Confidence 7899999999865432 23344679999999987776654 444443 89999997665321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.....|++||.+.+.+++.++.++ ||++++|.||.|..+... ....+.....+.+.-|+. -+
T Consensus 154 --~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~-~~~~~e~~~~~~~~~pl~------------R~ 218 (255)
T d1fmca_ 154 --INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALK-SVITPEIEQKMLQHTPIR------------RL 218 (255)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHH-TTCCHHHHHHHHHTCSSC------------SC
T ss_pred --cccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhh-ccCCHHHHHHHHhcCCCC------------CC
Confidence 345789999999999999999775 899999999999775321 111123344444443322 15
Q ss_pred ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 301 TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
...+|+|.+++.++...... ..|+++.+.+|.
T Consensus 219 g~pedvA~~v~fL~S~~s~~----------itG~~i~vDGG~ 250 (255)
T d1fmca_ 219 GQPQDIANAALFLCSPAASW----------VSGQILTVSGGG 250 (255)
T ss_dssp BCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred cCHHHHHHHHHHHhCchhcC----------CcCCEEEECcCc
Confidence 67899999999988655432 455899999885
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.94 E-value=2e-25 Score=203.01 Aligned_cols=227 Identities=10% Similarity=0.066 Sum_probs=169.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.++++|++|||||+++||+++++.|+++|++|++.+|+.+..+....+.+. ...++.++.+|++|+++++++++.+
T Consensus 6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~---~g~~~~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS---FGYESSGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT---TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999976655554443332 2357899999999999999988876
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|++|||||...... ..++.+..+++|+.++..+.+++ ++.+.+ +||++||...+..
T Consensus 83 ~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~IVnisS~~~~~~--------- 152 (251)
T d2c07a1 83 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYG-RIINISSIVGLTG--------- 152 (251)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHC---------
T ss_pred HhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCe-EEEEECCHHhcCC---------
Confidence 7899999999865432 22344679999999987776654 445544 9999999766532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
......|++||++.+.+++.++.++ ||++++|.||.|..+.... ........+...-++.
T Consensus 153 ---~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~--~~~~~~~~~~~~~pl~------------ 215 (251)
T d2c07a1 153 ---NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK--ISEQIKKNIISNIPAG------------ 215 (251)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-------CCHHHHHHHHTTCTTS------------
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccc--cCHHHHHHHHhcCCCC------------
Confidence 1345789999999999999998775 8999999999998874432 1233444454443321
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
-+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 216 R~~~pedvA~~v~fL~S~~s~~----------itG~~i~vDGG 248 (251)
T d2c07a1 216 RMGTPEEVANLACFLSSDKSGY----------INGRVFVIDGG 248 (251)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCchhCC----------CcCcEEEECCC
Confidence 1667899999999888655432 45589999876
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.93 E-value=1.1e-25 Score=205.65 Aligned_cols=230 Identities=14% Similarity=0.116 Sum_probs=166.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||+++||||+++||+++++.|+++|++|++.+|+.+..+....+. ..++.++.+|++|+++++++++.+
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~~Dvt~~~~v~~~~~~~~~ 75 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI------GPAACAIALDVTDQASIDRCVAELLD 75 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH------CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh------CCceEEEEeeCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999765443332221 357899999999999999988876
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||...... ..++.+..+++|+.|+..+.+++. +.+...+||++||.+.+..
T Consensus 76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~---------- 145 (256)
T d1k2wa_ 76 RWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRG---------- 145 (256)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC----------
T ss_pred HhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccc----------
Confidence 7899999999865432 223346799999999888877542 2232348999999776532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC---------CCcHHHHHHHHHcCCceeEEec
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP---------DMAYFFFTRDIIRGKRITVYEA 290 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 290 (424)
......|++||.+.+.+++.++.++ ||++++|.||.|-.|.... ..........+...-|+
T Consensus 146 --~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl----- 218 (256)
T d1k2wa_ 146 --EALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPF----- 218 (256)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTT-----
T ss_pred --cccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCC-----
Confidence 1345789999999999999999775 8999999999998763210 00000111112211111
Q ss_pred CCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 291 PDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 291 ~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
.-+...+|+|.+++.++...... ..|+++.+.+|..+|
T Consensus 219 -------gR~~~p~evA~~v~fL~S~~a~~----------iTG~~i~vDGG~~ms 256 (256)
T d1k2wa_ 219 -------GRMGRAEDLTGMAIFLATPEADY----------IVAQTYNVDGGNWMS 256 (256)
T ss_dssp -------SSCBCHHHHHHHHHHTTSGGGTT----------CCSCEEEESTTSSCC
T ss_pred -------CCCcCHHHHHHHHHHHhCchhCC----------ccCceEEECcchhhC
Confidence 11567899999999887654432 455899999887553
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.93 E-value=2.7e-25 Score=201.69 Aligned_cols=227 Identities=10% Similarity=0.018 Sum_probs=159.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|+++||||+++||+++++.|+++|++|++.+|++..... ... + ....++.++.+|++|+++++++++.+
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~--~~~--~-~~g~~~~~~~~Dvs~~~~v~~~~~~~~~ 76 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAE--AAI--R-NLGRRVLTVKCDVSQPGDVEAFGKQVIS 76 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHH--HHH--H-HTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHH--HHH--H-HcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999997643211 111 1 12467899999999999999988765
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||...... ..++.+..+++|+.|+.++.+++ ++.+.+ +||++||......
T Consensus 77 ~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~Iv~isS~~~~~~---------- 145 (247)
T d2ew8a1 77 TFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWG-RIINLTSTTYWLK---------- 145 (247)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGGSC----------
T ss_pred HcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCC-Cccccccchhccc----------
Confidence 7899999999865422 23345679999999987776654 445544 8999999766432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
......|++||.+.+.+++.++.++ |+++++|.||.|..|...... .......... . .....-
T Consensus 146 --~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~-~~~~~~~~~~-~----------~~~l~r 211 (247)
T d2ew8a1 146 --IEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASA-LSAMFDVLPN-M----------LQAIPR 211 (247)
T ss_dssp --CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-------------------C-T----------TSSSCS
T ss_pred --CcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccc-cchhHHHHHH-H----------hccCCC
Confidence 1345789999999999999999775 899999999999876432110 0001111100 0 011112
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 212 ~~~pedvA~~v~fL~S~~s~~----------itG~~i~vDGG~ 244 (247)
T d2ew8a1 212 LQVPLDLTGAAAFLASDDASF----------ITGQTLAVDGGM 244 (247)
T ss_dssp CCCTHHHHHHHHHHTSGGGTT----------CCSCEEEESSSC
T ss_pred CCCHHHHHHHHHHHhCchhcC----------CcCCeEEECCCE
Confidence 567899999999888655432 455899998764
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.93 E-value=2.4e-25 Score=203.43 Aligned_cols=231 Identities=16% Similarity=0.097 Sum_probs=155.0
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+.+++||++|||||+++||+++++.|+++|++|++++|+.+..++...+... ...++.++.+|++|+++++++++.+
T Consensus 3 ~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d1xq1a_ 3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK---KGFQVTGSVCDASLRPEREKLMQTV 79 (259)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCceEEEeccCCCHHHHHHHHHHH
Confidence 4478999999999999999999999999999999999987665554444332 2357899999999999988877654
Q ss_pred ------CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ------AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ------~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|++|||||....... .++.+..+++|+.|+.++.+++ ++.+.+ +||++||......
T Consensus 80 ~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G-~Iv~isS~~~~~~------- 151 (259)
T d1xq1a_ 80 SSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCG-NIIFMSSIAGVVS------- 151 (259)
T ss_dssp HHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-EEEEEC--------------
T ss_pred HHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccc-ccccccccccccc-------
Confidence 58999999998654322 3344679999999987777655 444544 8999999665432
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
......|+++|.+.+.+++.++.++ ||++++|.||.|-.|..... ......+.+....|+.
T Consensus 152 -----~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~-~~~~~~~~~~~~~pl~---------- 215 (259)
T d1xq1a_ 152 -----ASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV-YDDEFKKVVISRKPLG---------- 215 (259)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------------------------------
T ss_pred -----ccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhh-chHHHHHHHHhCCCCC----------
Confidence 1345789999999999999998775 89999999999987643210 0111111111111111
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
-+...+|+|.+++.++...... ..|+++.+.+|-.
T Consensus 216 --R~~~pedvA~~v~fL~S~~s~~----------iTG~~i~vDGG~s 250 (259)
T d1xq1a_ 216 --RFGEPEEVSSLVAFLCMPAASY----------ITGQTICVDGGLT 250 (259)
T ss_dssp ----CCGGGGHHHHHHHTSGGGTT----------CCSCEEECCCCEE
T ss_pred --CCcCHHHHHHHHHHHhCchhcC----------CcCcEEEeCCCEE
Confidence 1556789999999888654432 4558999987743
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.93 E-value=4.3e-25 Score=201.84 Aligned_cols=231 Identities=16% Similarity=0.091 Sum_probs=169.2
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+.+++||++|||||+++||+++++.|+++|++|++.+|+.+..++...+... ...++.++.+|++|+++++++++.+
T Consensus 3 ~f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~---~g~~~~~~~~Dv~~~~~v~~~~~~~ 79 (259)
T d2ae2a_ 3 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS---KGFKVEASVCDLSSRSERQELMNTV 79 (259)
T ss_dssp TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCCceEEEeeCCCHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999977665554444332 2457889999999999988877653
Q ss_pred ------CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ------AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ------~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|++|||||...... ..++.+..+++|+.++.++.+++ ++.+.+ +||++||......
T Consensus 80 ~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~Ii~isS~~~~~~------- 151 (259)
T d2ae2a_ 80 ANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERG-NVVFISSVSGALA------- 151 (259)
T ss_dssp HHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSE-EEEEECCGGGTSC-------
T ss_pred HHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccc-ccccccccccccc-------
Confidence 5899999999865432 23334679999999988777665 444433 8999999766432
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC---CCCcHHHHHHHHHcCCceeEEecCCC
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGR---PDMAYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
......|+++|.+.+.+++.++.++ ||++++|.||.|..|... .+.........+...-|+.
T Consensus 152 -----~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~------- 219 (259)
T d2ae2a_ 152 -----VPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALR------- 219 (259)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTC-------
T ss_pred -----cccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCC-------
Confidence 1345789999999999999999875 899999999999765211 1101112333333333321
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
-+...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 220 -----R~g~pedvA~~v~fL~S~~s~~----------itG~~i~VDGG~ 253 (259)
T d2ae2a_ 220 -----RMGEPKELAAMVAFLCFPAASY----------VTGQIIYVDGGL 253 (259)
T ss_dssp -----SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred -----CCcCHHHHHHHHHHHhCchhCC----------CcCcEEEECCCe
Confidence 1566899999999888655432 455899998774
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.2e-25 Score=203.37 Aligned_cols=224 Identities=14% Similarity=0.072 Sum_probs=165.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||+++||||+++||+++++.|+++|++|++.+|+.+..++..++. ..++.++.+|++|.++++++++.+
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 74 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL------GANGKGLMLNVTDPASIESVLEKIRA 74 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH------GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh------CCCCcEEEEEecCHHHhhhhhhhhhc
Confidence 368999999999999999999999999999999999765443332221 246788999999999999888765
Q ss_pred ---CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||....... .++.+..+++|+.++..+.+++ ++.+.+ +||++||...+...
T Consensus 75 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~II~isS~~~~~~~--------- 144 (243)
T d1q7ba_ 75 EFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHG-RIITIGSVVGTMGN--------- 144 (243)
T ss_dssp HTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHHCC---------
T ss_pred ccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCC-EeeeecchhhcCCC---------
Confidence 68999999998654332 2334578999999988776665 444433 89999997664321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.....|++||.+.+.+++.++.++ |+++++|+||.|-.+.... ........+....|+. -
T Consensus 145 ---~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl~------------R 207 (243)
T d1q7ba_ 145 ---GGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRA--LSDDQRAGILAQVPAG------------R 207 (243)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT--SCHHHHHHHHTTCTTS------------S
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhh--hhhhHHHHHHhcCCCC------------C
Confidence 345789999999999999999775 8999999999997652211 1112233333332221 2
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+...+|+|.+++.++...... ..|+++++.+|-
T Consensus 208 ~~~pedvA~~v~fL~S~~s~~----------itGq~i~vdGG~ 240 (243)
T d1q7ba_ 208 LGGAQEIANAVAFLASDEAAY----------ITGETLHVNGGM 240 (243)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTS
T ss_pred CCCHHHHHHHHHHHhCchhcC----------CcCCeEEECCCe
Confidence 667899999999888655432 455899998874
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=3.3e-25 Score=200.36 Aligned_cols=220 Identities=13% Similarity=0.060 Sum_probs=164.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.++||+++||||+++||+++++.|+++|++|++.+|+.+..+....+. ..++.++++|++|+++++++++.+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL------ADAARYVHLDVTQPAQWKAAVDTAVT 76 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT------GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh------hCcceEEEeecCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999765433322221 246789999999999999888776
Q ss_pred ---CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||....... .++.+..+++|+.++.++.+++ ++.+.+ +||++||...+...
T Consensus 77 ~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~Ii~isS~~~~~~~--------- 146 (244)
T d1nffa_ 77 AFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRG-SIINISSIEGLAGT--------- 146 (244)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC---------
T ss_pred HhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcc-eEEecccccccccc---------
Confidence 68999999998654322 2334679999999988776654 444433 89999997765321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.....|+++|++.+.+++.++.++ |+++++|.||.|..|....- .+. ... ....-
T Consensus 147 ---~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~------~~~---~~~----------~pl~R 204 (244)
T d1nffa_ 147 ---VACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV------PED---IFQ----------TALGR 204 (244)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS------CTT---CSC----------CSSSS
T ss_pred ---ccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhh------hHH---HHh----------ccccC
Confidence 345789999999999999999775 89999999999987632210 000 000 11112
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
+...+|+|.+++.++...... ..|+++.|.+|-.
T Consensus 205 ~~~p~diA~~v~fL~s~~s~~----------itG~~i~vDGG~~ 238 (244)
T d1nffa_ 205 AAEPVEVSNLVVYLASDESSY----------STGAEFVVDGGTV 238 (244)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred CCCHHHHHHHHHHHhChhhCC----------CcCCEEEECCCee
Confidence 678999999999888655432 4558999988753
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.93 E-value=3.4e-25 Score=202.74 Aligned_cols=228 Identities=14% Similarity=0.098 Sum_probs=167.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||++|||||+++||+++++.|+++|++|++.+|+.+..+........ ...++.++.+|++|.++++++++.+
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVRE---KGVEARSYVCDVTSEEAVIGTVDSVVR 78 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT---TTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999976655544433322 2457899999999999999888776
Q ss_pred ---CccEEEEcccccCc-h-h---hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGV-R-Y---AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~-~-~---~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|++|||||.... . . ..++.+..+++|+.++..+.+++ ++.+.+ +||++||.+.+...
T Consensus 79 ~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G-~II~isS~~~~~~~-------- 149 (260)
T d1zema1 79 DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYG-RIVNTASMAGVKGP-------- 149 (260)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHSCC--------
T ss_pred HhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCC-CCCeeechhhccCC--------
Confidence 78999999997532 1 1 22334679999999988777665 334433 99999997665321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCC--------------CCCCcHHHHHHHHHcCCc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWG--------------RPDMAYFFFTRDIIRGKR 284 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~--------------~~~~~~~~~~~~~~~~~~ 284 (424)
.....|++||.+.+.+++.++.++ ||++++|.||.|-.+.. ........+.+.+...-|
T Consensus 150 ----~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 225 (260)
T d1zema1 150 ----PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVP 225 (260)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTST
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCC
Confidence 335789999999999999999775 89999999999977521 011112233334444333
Q ss_pred eeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 285 ITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 285 ~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
+.. +...+|+|.+++.++...... ..|+++.|.+|
T Consensus 226 l~R------------~g~pedvA~~v~fL~S~~s~~----------itG~~i~VDGG 260 (260)
T d1zema1 226 MRR------------YGDINEIPGVVAFLLGDDSSF----------MTGVNLPIAGG 260 (260)
T ss_dssp TSS------------CBCGGGSHHHHHHHHSGGGTT----------CCSCEEEESCC
T ss_pred CCC------------CcCHHHHHHHHHHHhCchhcC----------ccCCeEEeCCC
Confidence 221 556799999999888765432 45588888765
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.93 E-value=4.7e-25 Score=200.57 Aligned_cols=224 Identities=15% Similarity=0.093 Sum_probs=161.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.++||++|||||+++||++++++|+++|++|++.+|+.+...... .+ + ..++.++++|++|+++++++++.+
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~----~~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATA----RE-L-GDAARYQHLDVTIEEDWQRVVAYARE 75 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH----HT-T-GGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----HH-h-CCceEEEEcccCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999764333221 11 1 346899999999999999988766
Q ss_pred ---CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||....... .++.+..+++|+.++.++.+++ ++.+.+ +||++||...+..
T Consensus 76 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G-~II~isS~~~~~~---------- 144 (254)
T d1hdca_ 76 EFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGG-SIVNISSAAGLMG---------- 144 (254)
T ss_dssp HHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSC----------
T ss_pred HcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCC-eecccccchhccc----------
Confidence 78999999998654322 2334579999999988776655 444443 9999999776532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
......|++||.+.+.+++.++.++ |+++++|.||.|..+ +.........-... ......-
T Consensus 145 --~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~----------~~~~~~~~~~~~~~----~~~pl~R 208 (254)
T d1hdca_ 145 --LALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP----------MTAETGIRQGEGNY----PNTPMGR 208 (254)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH----------HHHHHTCCCSTTSC----TTSTTSS
T ss_pred --ccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCc----------cchhcCHHHHHHHH----hCCCCCC
Confidence 1345789999999999999999775 899999999999765 11111111100000 0000001
Q ss_pred c-ccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 300 F-TYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 300 ~-i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+ +..+|+|.+++.++...... ..|+++.+.+|-
T Consensus 209 ~g~~PedvA~~v~fL~S~~a~~----------itG~~i~vDGG~ 242 (254)
T d1hdca_ 209 VGNEPGEIAGAVVKLLSDTSSY----------VTGAELAVDGGW 242 (254)
T ss_dssp CB-CHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTT
T ss_pred CCCCHHHHHHHHHHHhchhhCC----------CCCceEEeCCCc
Confidence 2 35799999999888655432 455899998874
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=2.5e-25 Score=200.49 Aligned_cols=215 Identities=13% Similarity=0.089 Sum_probs=158.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++++|++|||||+++||+++++.|+++|++|++.+|+.+. ..++..+++|++|+++++++++.+
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~--------------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 69 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA--------------PKGLFGVEVDVTDSDAVDRAFTAVEE 69 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC--------------CTTSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch--------------hcCceEEEEecCCHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999996542 246788999999999999888776
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||...... ..++.+..+++|+.++..+.++ +++.+.+ +||++||.+.....
T Consensus 70 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g-~Iv~isS~~~~~~~--------- 139 (237)
T d1uzma1 70 HQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFG-RMIFIGSVSGLWGI--------- 139 (237)
T ss_dssp HHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCCCC-------------
T ss_pred hcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCC-ceEEEcchhhccCC---------
Confidence 6899999999865432 2333467999999997766554 4555544 89999997664321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.....|++||.+.+.+++.++.++ |+++++|.||.|..+.... ........+....++ .-
T Consensus 140 ---~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~--~~~~~~~~~~~~~pl------------~R 202 (237)
T d1uzma1 140 ---GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA--LDERIQQGALQFIPA------------KR 202 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH--SCHHHHHHHGGGCTT------------CS
T ss_pred ---cccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhc--cCHHHHHHHHhcCCC------------CC
Confidence 345789999999999999998775 8999999999997652110 011222222222211 11
Q ss_pred cccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 300 FTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 203 ~~~pedvA~~v~fL~S~~s~~----------itG~~i~vdGG 234 (237)
T d1uzma1 203 VGTPAEVAGVVSFLASEDASY----------ISGAVIPVDGG 234 (237)
T ss_dssp CBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhcC----------CcCCeEEECCC
Confidence 667899999999888665432 45589999876
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.93 E-value=4.7e-25 Score=201.54 Aligned_cols=226 Identities=16% Similarity=0.105 Sum_probs=168.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
.||++|||||+++||+++++.|+++|++|++.+|+.+..++..++... ...++.++++|++|+++++++++.+
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~---~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE---AGVEADGRTCDVRSVPEIEALVAAVVERY 77 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999999987665554444332 2457899999999999999888765
Q ss_pred -CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSS------DPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~------~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||...... ..++.+..+++|+.|+.++.+++.+. +. .++|++||...+...
T Consensus 78 g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~-g~Ii~i~S~~~~~~~--------- 147 (257)
T d2rhca1 78 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT-GRIVNIASTGGKQGV--------- 147 (257)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTE-EEEEEECCGGGTSCC---------
T ss_pred CCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCC-ccccccccccccccc---------
Confidence 6899999999865432 23334679999999999998877542 32 389999987665321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC---------CCCcHHHHHHHHHcCCceeEEec
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGR---------PDMAYFFFTRDIIRGKRITVYEA 290 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~---------~~~~~~~~~~~~~~~~~~~~~~~ 290 (424)
.....|++||.+.+.+++.++.++ ||++++|.||.|-.|... ...........+...-|+.
T Consensus 148 ---~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Plg---- 220 (257)
T d2rhca1 148 ---VHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIG---- 220 (257)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTS----
T ss_pred ---ccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCC----
Confidence 345789999999999999999885 799999999999765210 0111222333444333221
Q ss_pred CCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 291 PDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 291 ~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
-+...+|+|.+++.++...... ..|+++.|.+|
T Consensus 221 --------R~~~pedia~~v~fL~S~~s~~----------itG~~i~vDGG 253 (257)
T d2rhca1 221 --------RYVQPSEVAEMVAYLIGPGAAA----------VTAQALNVCGG 253 (257)
T ss_dssp --------SCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTT
T ss_pred --------CCcCHHHHHHHHHHHhCchhcC----------CcCceEEECcC
Confidence 1667899999999888654432 45589999876
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.93 E-value=2.6e-25 Score=202.28 Aligned_cols=228 Identities=14% Similarity=0.084 Sum_probs=164.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||++|||||+++||+++++.|+++|++|++.+|+.+..+...... ....++.++.+|++|+++++++++.+
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV----GTPDQIQFFQHDSSDEDGWTKLFDATEK 78 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CCTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----CCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999999765443333222 23457999999999999999888876
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||...... ..++.+..+++|+.|+.++.+++ ++.+.+.+||++||...+-.
T Consensus 79 ~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~---------- 148 (251)
T d1zk4a1 79 AFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVG---------- 148 (251)
T ss_dssp HHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSC----------
T ss_pred HhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceecc----------
Confidence 7899999999865432 22334579999999988877765 34443348999999765431
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHI-----YGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
......|++||.+.+.+++.++.+ +||++++|.||.|..|..... .-...... ....++ .
T Consensus 149 --~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~-~~~~~~~~--~~~~~p----------l 213 (251)
T d1zk4a1 149 --DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDL-PGAEEAMS--QRTKTP----------M 213 (251)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTS-TTHHHHHT--STTTCT----------T
T ss_pred --CCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhc-CCHHHHHH--HHhCCC----------C
Confidence 134578999999999999988754 379999999999976522110 00011111 111111 1
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.-+...+|+|.+++.++...... ..|+++.|.+|-
T Consensus 214 ~R~~~pedvA~~v~fL~S~~s~~----------itG~~i~vDGG~ 248 (251)
T d1zk4a1 214 GHIGEPNDIAYICVYLASNESKF----------ATGSEFVVDGGY 248 (251)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHhCchhCC----------CcCcEEEECccc
Confidence 12678999999999888654432 455899998763
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=4.7e-25 Score=200.07 Aligned_cols=226 Identities=15% Similarity=0.047 Sum_probs=162.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.++||++|||||+++||+++++.|+++|++|++.+|+.+..+ ... ..+..++++|++|.++++++++.+
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~-----~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~ 72 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-----VAE----AIGGAFFQVDLEDERERVRFVEEAAY 72 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH-----HHH----HHTCEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-----HHH----HcCCeEEEEeCCCHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999765321 111 124578999999999999888776
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||...... ..++.+..+++|+.|+.++.+++. +.+.+ +||++||...+...
T Consensus 73 ~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G-~Ii~isS~~~~~~~--------- 142 (248)
T d2d1ya1 73 ALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGG-AIVNVASVQGLFAE--------- 142 (248)
T ss_dssp HHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCE-EEEEECCGGGTSBC---------
T ss_pred hcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccc-cccccccccccccc---------
Confidence 7899999999865432 223346799999999887777654 44433 89999997765321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC----CCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP----DMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
.....|+++|++.+.+++.++.++ |+++++|.||.|-.|.... ........+.+....+
T Consensus 143 ---~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p----------- 208 (248)
T d2d1ya1 143 ---QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHA----------- 208 (248)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTST-----------
T ss_pred ---cccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCC-----------
Confidence 345789999999999999998875 8999999999997651100 0000011111221111
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
..-+...+|+|.+++.++...... ..|+++.+.+|-..|
T Consensus 209 -l~R~~~pedia~~v~fL~S~~s~~----------itG~~i~vDGG~tas 247 (248)
T d2d1ya1 209 -LRRLGKPEEVAEAVLFLASEKASF----------ITGAILPVDGGMTAS 247 (248)
T ss_dssp -TSSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGB
T ss_pred -CCCCcCHHHHHHHHHHHhCchhcC----------CCCcEEEcCcCcccc
Confidence 112567899999999888654432 455899998875443
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=9.6e-25 Score=200.28 Aligned_cols=233 Identities=13% Similarity=0.090 Sum_probs=160.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||++|||||+++||++++++|+++|++|++.+|+.+..+....+.........++.++.+|++|.++++++++.+
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999877666555544443334457999999999999999988766
Q ss_pred ---CccEEEEcccccCchh--------hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecC-CcccCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY--------AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASS-SSVYGVNKKVP 217 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~--------~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS-~~vyg~~~~~~ 217 (424)
++|++|||||...... ..++.+..+++|+.++.++.+++. +.+ . .+|+++| .+.+..
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g-~iI~~~S~~~~~~~----- 154 (264)
T d1spxa_ 82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-G-EIVNISSIASGLHA----- 154 (264)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C-EEEEECCTTSSSSC-----
T ss_pred HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc-C-cceeeeeecccccc-----
Confidence 7899999999753211 223346789999999877766653 333 2 4555554 443321
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC-------cHHHHHHHHHcCCceeE
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM-------AYFFFTRDIIRGKRITV 287 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~-------~~~~~~~~~~~~~~~~~ 287 (424)
......|++||.+.+.+++.++.++ |+++++|.||.|-.+...... ........+...-|+.
T Consensus 155 -------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~- 226 (264)
T d1spxa_ 155 -------TPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAG- 226 (264)
T ss_dssp -------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTTS-
T ss_pred -------CCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCCC-
Confidence 1334679999999999999999875 899999999999776432110 0111122222221111
Q ss_pred EecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 288 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
-+...+|+|.+++.++..+..+. ..|+++.|.+|..
T Consensus 227 -----------R~g~pedvA~~v~fL~S~~~s~~---------itG~~i~vDGG~s 262 (264)
T d1spxa_ 227 -----------VMGQPQDIAEVIAFLADRKTSSY---------IIGHQLVVDGGSS 262 (264)
T ss_dssp -----------SCBCHHHHHHHHHHHHCHHHHTT---------CCSCEEEESTTGG
T ss_pred -----------CCcCHHHHHHHHHHHhCCcccCC---------ccCceEEeCCChh
Confidence 15678999999998886442111 3458999988753
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.93 E-value=6.3e-25 Score=201.06 Aligned_cols=234 Identities=12% Similarity=0.048 Sum_probs=160.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch-hhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY-ETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
++||++|||||+++||+++++.|+++|++|++.+|+.... +....... .....++.++.+|++|.++++++++.+
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~--~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLA--AQHGVKVLYDGADLSKGEAVRGLVDNAVR 79 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH--HHHTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHH--HhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999975332 22222111 123457899999999999999998876
Q ss_pred ---CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
++|+||||||....... .++.+..+++|+.|+.++.+++ ++.+.+ +||++||.+.+...
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G-~Iv~isS~~~~~~~--------- 149 (260)
T d1x1ta1 80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFG-RIINIASAHGLVAS--------- 149 (260)
T ss_dssp HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC---------
T ss_pred HhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCc-eEeecccccceecc---------
Confidence 68999999998654322 2334679999999987765554 555544 89999997665421
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCcee----EEecCCCCc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRIT----VYEAPDGAS 295 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 295 (424)
.....|++||.+.+.+++.++.++ |+++++|.||.|-.|.... ............ .........
T Consensus 150 ---~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (260)
T d1x1ta1 150 ---ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEK------QISALAEKNGVDQETAARELLSEKQ 220 (260)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------------CHHHHC
T ss_pred ---CCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhh------hhhhhhhhcCCChHHHHHHHHHhcC
Confidence 345789999999999999999875 8999999999998763221 111100000000 000000000
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
...-+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 221 Pl~R~g~pediA~~v~fL~S~~a~~----------itG~~i~vDGG 256 (260)
T d1x1ta1 221 PSLQFVTPEQLGGTAVFLASDAAAQ----------ITGTTVSVDGG 256 (260)
T ss_dssp TTCCCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTT
T ss_pred CCCCCcCHHHHHHHHHHHhChhhCC----------CcCCEEEECcc
Confidence 0112677999999999888654432 45589999876
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.92 E-value=1.6e-24 Score=199.22 Aligned_cols=233 Identities=11% Similarity=0.094 Sum_probs=166.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||++|||||+++||+++++.|+++|++|++++|+.+..++...+. .....+.++.+|++|+++++++++.+
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l----~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI----GSPDVISFVHCDVTKDEDVRNLVDTTIA 78 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CCTTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----cCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999999765544333322 23456889999999999999988765
Q ss_pred ---CccEEEEcccccCchh------hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY------AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~------~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|++|||||...... ..++.+..+++|+.|+..+.+++ ++.+.+ ++|++||...+...
T Consensus 79 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g-~ii~iss~~~~~~~------- 150 (268)
T d2bgka1 79 KHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKG-SIVFTASISSFTAG------- 150 (268)
T ss_dssp HHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCE-EEEEECCGGGTCCC-------
T ss_pred HcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCC-Cccccccccccccc-------
Confidence 7899999999754321 12234678999999987776655 444433 88999886654321
Q ss_pred CCCCCCC-CChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC-cHHHHHHHHHcCCceeEEecCCCCc
Q 042406 221 KDRTDQP-ASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM-AYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 221 ~~~~~~~-~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
.+ ...|++||.+.+.+++.++.++ ||++++|.||.|-+|....-. ...............+.
T Consensus 151 -----~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~-------- 217 (268)
T d2bgka1 151 -----EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLK-------- 217 (268)
T ss_dssp -----TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSC--------
T ss_pred -----cccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccccC--------
Confidence 22 2479999999999999998775 899999999999887532210 01111222211111111
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
.-+...+|+|.+++.++...... ..|+++.|.+|-..+
T Consensus 218 --gr~~~pedvA~~v~fL~S~~s~~----------itGq~i~VDGG~t~~ 255 (268)
T d2bgka1 218 --GTLLRAEDVADAVAYLAGDESKY----------VSGLNLVIDGGYTRT 255 (268)
T ss_dssp --SCCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGC
T ss_pred --CCCcCHHHHHHHHHHHhChhhCC----------ccCceEEECcCcccC
Confidence 12667899999999888655432 455999998875433
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.92 E-value=3.3e-24 Score=195.67 Aligned_cols=229 Identities=15% Similarity=0.086 Sum_probs=166.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||++|||||+++||++++++|+++|++|++.+|+.+..++..+..+. ....+.++.+|++|.++++++++.+
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~---~~~~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE---KGLNVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCCceEEEeecCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999987655554433322 3457889999999999988877643
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
.+|+||||||...... ..++.+..+++|+.++..+.+++. +.+.+ ++|++||......
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g-~ii~isS~~~~~~--------- 149 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNG-NVIFLSSIAGFSA--------- 149 (258)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSE-EEEEECCGGGTSC---------
T ss_pred HhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccc-ccccccccccccc---------
Confidence 4899999999865422 233446799999999888776553 34443 9999999777542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC----CcHHHHHHHHHcCCceeEEecCCCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD----MAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
......|+.+|.+.+.+++.++.++ ||++.+|.||.|..|..... .........+....++.
T Consensus 150 ---~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plg-------- 218 (258)
T d1ae1a_ 150 ---LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMG-------- 218 (258)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTTC--------
T ss_pred ---cccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCCC--------
Confidence 1345789999999999999999875 89999999999988743211 01112333333332221
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
-+...+|+|.+++.++...... ..|+.+.|.+|-
T Consensus 219 ----R~~~pediA~~v~fL~S~~s~~----------itG~~i~vDGG~ 252 (258)
T d1ae1a_ 219 ----RAGKPQEVSALIAFLCFPAASY----------ITGQIIWADGGF 252 (258)
T ss_dssp ----SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred ----CCcCHHHHHHHHHHHhChhhCC----------CcCcEEEeCCCe
Confidence 1678899999999988655432 445889888763
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.92 E-value=1.9e-24 Score=197.16 Aligned_cols=226 Identities=14% Similarity=0.106 Sum_probs=163.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----C
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----A 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~ 154 (424)
|++|||||+++||++++++|+++|++|++.+|+.+..+....+... ...++.++++|++|+++++++++.+ +
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQ---AGGHAVAVKVDVSDRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 5679999999999999999999999999999987655554443332 2357899999999999999888775 6
Q ss_pred ccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
+|+||||||...... ..++.+..+++|+.|+.++.+++ .+.+...++|++||.+.+.. ..
T Consensus 79 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~------------~~ 146 (255)
T d1gega_ 79 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVG------------NP 146 (255)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC------------CT
T ss_pred ccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhccc------------Cc
Confidence 899999999865422 22334679999999988877664 34444447999999766432 13
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC---------CCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP---------DMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
....|++||.+.+.+++.++.++ |+++++|.||.|-.|.... ..........+.+..|+
T Consensus 147 ~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl--------- 217 (255)
T d1gega_ 147 ELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITL--------- 217 (255)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTT---------
T ss_pred ccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCC---------
Confidence 45789999999999999998775 8999999999997652100 00000112222222221
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.-+...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 218 ---~R~~~peevA~~v~fL~S~~a~~----------itG~~i~vDGG~ 252 (255)
T d1gega_ 218 ---GRLSEPEDVAACVSYLASPDSDY----------MTGQSLLIDGGM 252 (255)
T ss_dssp ---CSCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESSSS
T ss_pred ---CCCcCHHHHHHHHHHHhCchhCC----------ccCcEEEecCCE
Confidence 12667899999999888654432 455899998875
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=8.3e-25 Score=203.62 Aligned_cols=233 Identities=13% Similarity=0.115 Sum_probs=168.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhh--hccCCeEEEEccCCCHHHHHHHhh
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL--LERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
+..++||++|||||+++||+++++.|+++|++|++.+|+.+..+....+..... ....++.++.+|++|+++++++++
T Consensus 7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~ 86 (297)
T d1yxma1 7 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK 86 (297)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHH
Confidence 345899999999999999999999999999999999998776665555444322 234578999999999999998887
Q ss_pred cc-----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCCcccCCCCCCCC
Q 042406 152 VV-----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKS----SDPQPAIVWASSSSVYGVNKKVPF 218 (424)
Q Consensus 152 ~~-----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~----~~~~~~~v~~SS~~vyg~~~~~~~ 218 (424)
.+ ++|++|||||...... ..++.+..+++|+.|+..+.+++.+ .+.. ++|++||++..+.
T Consensus 87 ~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g-~Ii~~ss~~~~~~------ 159 (297)
T d1yxma1 87 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGG-SIVNIIVPTKAGF------ 159 (297)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCE-EEEEECCCCTTCC------
T ss_pred HHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccc-ccccccccccccc------
Confidence 65 7899999999754322 2334467999999998888776643 3333 6887776544321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCC--cHHHHHHHHHcCCceeEEecCCC
Q 042406 219 SEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDM--AYFFFTRDIIRGKRITVYEAPDG 293 (424)
Q Consensus 219 ~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 293 (424)
.....|+.+|.+.+.+++.++.++ ||++++|.||.|..+...... ....+........++
T Consensus 160 -------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~pl-------- 224 (297)
T d1yxma1 160 -------PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPA-------- 224 (297)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTT--------
T ss_pred -------cccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCC--------
Confidence 335789999999999999999775 899999999999876432110 000111111111111
Q ss_pred CccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 294 ASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 294 ~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.-+...+|+|.+++.++...... ..|+++.|.+|.
T Consensus 225 ----gR~g~pedvA~~v~fL~Sd~s~~----------iTG~~i~VDGG~ 259 (297)
T d1yxma1 225 ----KRIGVPEEVSSVVCFLLSPAASF----------ITGQSVDVDGGR 259 (297)
T ss_dssp ----SSCBCTHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred ----CCCcCHHHHHHHHHHHhCchhcC----------cCCcEEEeCcCh
Confidence 12566899999999888655432 455899998875
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.2e-24 Score=195.75 Aligned_cols=224 Identities=16% Similarity=0.078 Sum_probs=162.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||++|||||+++||+++++.|+++|++|++.+|+.+..+. ... ...++.++.+|++|.++++++++.+
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~----~~~---~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 75 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRA----LEQ---ELPGAVFILCDVTQEDDVKTLVSETIR 75 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HHH---HCTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH----HHH---hcCCCeEEEccCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999996543322 111 1246889999999999999988876
Q ss_pred ---CccEEEEcccccCch-----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVR-----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~-----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|++|||||..... ...++.+..+++|+.|+.++.+++ ++.+ .++|++||.+....
T Consensus 76 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--G~Ii~isS~~~~~~--------- 144 (250)
T d1ydea1 76 RFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ--GNVINISSLVGAIG--------- 144 (250)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCHHHHHC---------
T ss_pred hcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC--CCCccccccccccc---------
Confidence 789999999975321 122334679999999988776655 4433 38999999766432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC----CCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGR----PDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
......|+++|.+.+.+++.++.++ ||++++|.||.|..|... ........++......|+.
T Consensus 145 ---~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~-------- 213 (250)
T d1ydea1 145 ---QAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLG-------- 213 (250)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTS--------
T ss_pred ---ccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCCC--------
Confidence 1345789999999999999999875 899999999999764210 0000112223333322221
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
-+...+|+|.+++.++.. ... ..|+++.+.+|-.
T Consensus 214 ----R~g~p~eva~~v~fL~Sd-a~~----------itG~~i~vDGG~~ 247 (250)
T d1ydea1 214 ----RMGQPAEVGAAAVFLASE-ANF----------CTGIELLVTGGAE 247 (250)
T ss_dssp ----SCBCHHHHHHHHHHHHHH-CTT----------CCSCEEEESTTTT
T ss_pred ----CCCCHHHHHHHHHHHhCc-cCC----------CcCCeEEECCCcc
Confidence 266789999999988753 221 4458999988754
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.1e-25 Score=203.42 Aligned_cols=230 Identities=16% Similarity=0.103 Sum_probs=163.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
+||++|||||+++||+++++.|+++|++|++.+|+.++.++...+... .....++.++.+|++|+++++++++.+
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHE-QFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTT-TSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-hcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999999999999999987655544433322 223457899999999999999988766
Q ss_pred -CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHH----HhcC--CCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETC----KSSD--PQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~----~~~~--~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
++|++|||||... ..+.+..+++|+.++.++..++ ++.+ ...+||++||.+.+-. ..
T Consensus 81 G~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~------------~~ 144 (254)
T d2gdza1 81 GRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP------------VA 144 (254)
T ss_dssp SCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC------------CT
T ss_pred CCcCeecccccccc----cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccC------------CC
Confidence 6899999999864 4567889999999877665554 3322 2237999999766432 13
Q ss_pred CCChHHHHHHHHHHHHHH--HHHH---hCCcEEEEEeccccCCCCCC---C---CcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 227 PASLYAATKKAGEAIAHA--YNHI---YGLSITGLRFFTVYGPWGRP---D---MAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~--~~~~---~~i~~~~vrp~~v~G~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
....|++||.+.+.+++. ++.+ +|+++++|+||.|-.|.... + .........+...-+
T Consensus 145 ~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p----------- 213 (254)
T d2gdza1 145 QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIK----------- 213 (254)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHH-----------
T ss_pred CccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCC-----------
Confidence 457899999999999986 3433 48999999999987641100 0 000000111111000
Q ss_pred cccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcccHHH
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSR 348 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~e 348 (424)
..-+...+|+|++++.++.+.. ..|+++.|.+|..+.+.|
T Consensus 214 -~~r~~~pedvA~~v~fL~s~~~------------itG~~i~VdGG~~~~~~~ 253 (254)
T d2gdza1 214 -YYGILDPPLIANGLITLIEDDA------------LNGAIMKITTSKGIHFQD 253 (254)
T ss_dssp -HHCCBCHHHHHHHHHHHHHCTT------------CSSCEEEEETTTEEEECC
T ss_pred -CCCCcCHHHHHHHHHHHHcCCC------------CCCCEEEECCCCeeeccc
Confidence 1125668999999999987543 345899999887665543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.92 E-value=1.6e-24 Score=199.63 Aligned_cols=238 Identities=15% Similarity=0.067 Sum_probs=164.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||++|||||+++||+++++.|+++|++|++.+|+.+..++.............++.++.+|++|+++++++++.+
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999876665555544443334457899999999999999888766
Q ss_pred ---CccEEEEcccccCchhh----cc----ChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA----MQ----NPNSYVESNIAGFVNLLETCKSS---DPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~----~~----~~~~~~~~N~~g~~~ll~a~~~~---~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|++|||||....... .+ +.+..+++|+.++.++.+++... +....|+++||.+....
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss~a~~~~------- 154 (272)
T d1xkqa_ 82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQA------- 154 (272)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSSC-------
T ss_pred HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccchhccccC-------
Confidence 78999999998643211 11 24568999999988877765432 22324444444443321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCC----CCCcHHHHHHHHHc-CCceeEEecC
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGR----PDMAYFFFTRDIIR-GKRITVYEAP 291 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~ 291 (424)
......|++||.+.+.+++.++.++ ||++++|.||.|-.+... .+.....+...... ...+++
T Consensus 155 -----~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl---- 225 (272)
T d1xkqa_ 155 -----QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPI---- 225 (272)
T ss_dssp -----CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT----
T ss_pred -----CCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCCC----
Confidence 1335789999999999999999775 899999999999765311 00001111111111 111211
Q ss_pred CCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 292 DGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 292 ~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
.-+...+|+|.+++.++....... ..|+++.|.+|..+
T Consensus 226 ------gR~g~pediA~~v~fL~S~~as~~---------iTG~~i~vDGG~~l 263 (272)
T d1xkqa_ 226 ------GAAGKPEHIANIILFLADRNLSFY---------ILGQSIVADGGTSL 263 (272)
T ss_dssp ------SSCBCHHHHHHHHHHHHCHHHHTT---------CCSCEEEESTTGGG
T ss_pred ------CCCcCHHHHHHHHHHHhCcchhCC---------ccCeEEEeCcCHHH
Confidence 126678999999998885432110 34489999887644
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.92 E-value=1.5e-24 Score=199.96 Aligned_cols=235 Identities=13% Similarity=0.062 Sum_probs=166.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||+++||||+++||+++++.|+++|++|++.+|+.+..+....+.........++.++.+|++|+++++++++.+
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999876665555544443333457899999999999999888766
Q ss_pred ---CccEEEEcccccCchh------hccChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY------AMQNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~------~~~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|++|||||...... ..++.+..+++|+.++..+.+++. +.+. .+++++||.+....
T Consensus 81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-g~ii~~ss~~~~~~-------- 151 (274)
T d1xhla_ 81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKG-EIVNVSSIVAGPQA-------- 151 (274)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEECCGGGSSSC--------
T ss_pred HcCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccccc-ccccchhhhhcccc--------
Confidence 6899999999743211 122346789999999887776654 3333 37888877554321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC---CCcHHHHHHHHH-c-CCceeEEecCC
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP---DMAYFFFTRDII-R-GKRITVYEAPD 292 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~---~~~~~~~~~~~~-~-~~~~~~~~~~~ 292 (424)
......|+++|.+.+.+++.++.++ ||++++|.||.|-.|.... ......-..... . ...+++
T Consensus 152 ----~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iPl----- 222 (274)
T d1xhla_ 152 ----HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPV----- 222 (274)
T ss_dssp ----CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT-----
T ss_pred ----CCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCCC-----
Confidence 1345789999999999999998775 8999999999998762110 000011111111 1 111111
Q ss_pred CCccccccccHHHHHHHHHHHhhhc-cccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTA-KKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
.-+...+|+|.+++.++..+ ... ..|+++.+.+|..
T Consensus 223 -----gR~g~pediA~~v~fL~S~d~s~~----------itG~~i~vDGG~~ 259 (274)
T d1xhla_ 223 -----GHCGKPEEIANIIVFLADRNLSSY----------IIGQSIVADGGST 259 (274)
T ss_dssp -----SSCBCHHHHHHHHHHHHCHHHHTT----------CCSCEEEESTTGG
T ss_pred -----CCCcCHHHHHHHHHHHcCCccccC----------ccCcEEEeCcCHH
Confidence 11567899999999888532 221 3458999988754
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.92 E-value=8.1e-25 Score=197.48 Aligned_cols=230 Identities=20% Similarity=0.172 Sum_probs=161.2
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCe--EEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDG--VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~--V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
++++||||||+||||+++++.|+++|+. |+.+.|+.+. .. ....+++++.+|+.+.+.+.++++++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~---------~~-~~~~~~~~~~~d~~~~~~~~~~~~~~-- 69 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG---------KE-KIGGEADVFIGDITDADSINPAFQGI-- 69 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHH---------HH-HTTCCTTEEECCTTSHHHHHHHHTTC--
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHH---------HH-hccCCcEEEEeeeccccccccccccc--
Confidence 4678999999999999999999999976 5556664321 11 12357899999999999999999977
Q ss_pred cEEEEcccccCchhh-------------ccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCC
Q 042406 156 THVMHLAAQAGVRYA-------------MQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKD 222 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~-------------~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~ 222 (424)
|+|||+|+....... ..+......+|+.|+.+++..+.....+ .+.+.|+...+......
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~------ 142 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVGSMGGTNPDHPL------ 142 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEEETTTTCTTCGG------
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccccc-ccccccccccCCCCccc------
Confidence 999999987543211 1223457889999999999999988876 88888887665432110
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.......|...+.+.+ .+....+++++++||+++|||...... ..............+++|
T Consensus 143 -~~~~~~~~~~~~~~~~----~~~~~~~~~~~ilRp~~v~g~~~~~~~--------------~~~~~~~~~~~~~~~~i~ 203 (252)
T d2q46a1 143 -NKLGNGNILVWKRKAE----QYLADSGTPYTIIRAGGLLDKEGGVRE--------------LLVGKDDELLQTDTKTVP 203 (252)
T ss_dssp -GGGGGCCHHHHHHHHH----HHHHHSSSCEEEEEECEEECSCTTSSC--------------EEEESTTGGGGSSCCEEE
T ss_pred -ccccccchhhhhhhhh----hhhhcccccceeecceEEECCCcchhh--------------hhhccCcccccCCCCeEE
Confidence 0012344555555444 344556999999999999999654211 111100011244567999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC---cccHHHHHHHHHHHh
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT---PVPVSRLVSLLEKIL 357 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~s~~el~~~i~~~~ 357 (424)
++|+|++++.+++++. +.|++|||+++. ..++.|+.+++.+..
T Consensus 204 ~~Dva~a~~~~l~~~~------------~~g~~~~i~~~~~~~~~~~~~~~~lf~~i~ 249 (252)
T d2q46a1 204 RADVAEVCIQALLFEE------------AKNKAFDLGSKPEGTSTPTKDFKALFSQVT 249 (252)
T ss_dssp HHHHHHHHHHHTTCGG------------GTTEEEEEEECCTTTSCCCCCHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCcc------------ccCcEEEEeeCCCCCChhHHHHHHHHHHHH
Confidence 9999999999998765 234899998633 456777777665543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.92 E-value=1.7e-24 Score=196.96 Aligned_cols=228 Identities=14% Similarity=0.053 Sum_probs=160.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||+++||||+++||+++++.|+++|++|++.+|+.+..+....+ . ..+..++++|++|.++++++++.+
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~-----~-~~~~~~~~~Dv~~~~~~~~~~~~~~~ 76 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAE-----L-GERSMFVRHDVSSEADWTLVMAAVQR 76 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH-----H-CTTEEEECCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-----h-CCCeEEEEeecCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999976543332221 1 356789999999999999888776
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSD--PQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~--~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
++|+||||||...... ..++.+..+++|+.++..+.+++.... .+.+||++||.+.+..
T Consensus 77 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~------------ 144 (253)
T d1hxha_ 77 RLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLP------------ 144 (253)
T ss_dssp HHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSC------------
T ss_pred HhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcC------------
Confidence 6899999999865422 233346799999999887766654321 1238999999766432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCce-eEEecCCCCcccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRI-TVYEAPDGASVAR 298 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~-----~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 298 (424)
......|+.||.+.+.+++.++.++ +|++++|.||.|..|. .......... ............-
T Consensus 145 ~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~----------~~~~~~~~~~~~~~~~~~~~~~~g 214 (253)
T d1hxha_ 145 IEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPM----------MQASLPKGVSKEMVLHDPKLNRAG 214 (253)
T ss_dssp CTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHH----------HHHHSCTTCCHHHHBCBTTTBTTC
T ss_pred ccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHh----------HHhhCcchhhHHHHHhCccccccC
Confidence 1345789999999999999887653 4999999999997651 1111110000 0000000001111
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
-+...+|+|.+++.++...... ..|+++++.+|
T Consensus 215 r~~~pedvA~~v~fL~S~~s~~----------itG~~i~VDGG 247 (253)
T d1hxha_ 215 RAYMPERIAQLVLFLASDESSV----------MSGSELHADNS 247 (253)
T ss_dssp CEECHHHHHHHHHHHHSGGGTT----------CCSCEEEESSS
T ss_pred CCCCHHHHHHHHHHHhChhhCC----------CcCcEEEECcc
Confidence 3667899999999888655432 45589999876
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.92 E-value=8.2e-24 Score=193.49 Aligned_cols=231 Identities=18% Similarity=0.142 Sum_probs=163.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchh-hhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYE-TSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
++++||+||||||+++||+++++.|+++|++|++.++..+... ........ ...++.++.+|++|.++++++++..
T Consensus 2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~---~g~~~~~~~~D~~~~~~v~~~~~~~ 78 (259)
T d1ja9a_ 2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK---LGAQGVAIQADISKPSEVVALFDKA 78 (259)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---TTCCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHH---cCCCceEecCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999998877554322 22222211 2357899999999999999888765
Q ss_pred -----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecC-CcccCCCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASS-SSVYGVNKKVPFSEKD 222 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS-~~vyg~~~~~~~~e~~ 222 (424)
++|++|||||...... ..++.+..+++|+.+..++++++.+... ..++++++| .+.+..
T Consensus 79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~---------- 148 (259)
T d1ja9a_ 79 VSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTG---------- 148 (259)
T ss_dssp HHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCS----------
T ss_pred HHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccC----------
Confidence 6899999999865432 2233467999999998888777654321 124555544 443321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCC-----------CCCCCcHHHHHHHHHcCCceeEE
Q 042406 223 RTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPW-----------GRPDMAYFFFTRDIIRGKRITVY 288 (424)
Q Consensus 223 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 288 (424)
......|+++|.+.+.+++.++.++ |+++++|+||.|-.+- .........+...+....++.
T Consensus 149 --~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~-- 224 (259)
T d1ja9a_ 149 --IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLK-- 224 (259)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTS--
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCC--
Confidence 1345789999999999999999874 8999999999986531 111111223444444444322
Q ss_pred ecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 289 EAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 289 ~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
-+...+|+|++++.++...... ..|+++.+.+|.
T Consensus 225 ----------R~g~p~eVa~~v~fL~S~~a~~----------itG~~i~vDGG~ 258 (259)
T d1ja9a_ 225 ----------RIGYPADIGRAVSALCQEESEW----------INGQVIKLTGGG 258 (259)
T ss_dssp ----------SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred ----------CCcCHHHHHHHHHHHhCchhcC----------CcCceEEeCCCC
Confidence 2667899999999988766543 455899998874
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.92 E-value=2.6e-24 Score=196.91 Aligned_cols=237 Identities=14% Similarity=0.085 Sum_probs=170.4
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.+.+||++|||||+++||+++++.|+++|++|++.+|+.+...+...+.... ...++.++++|++|+++++++++.+
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE--FGVKTKAYQCDVSNTDIVTKTIQQID 82 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH--HTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH--hCCceEEEEccCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999887766554443322 2467899999999999999888765
Q ss_pred ----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|++|||||...... ..++.+..+++|+.|+.++.+++ .+.+...+++..||...+.......
T Consensus 83 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~---- 158 (260)
T d1h5qa_ 83 ADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSL---- 158 (260)
T ss_dssp HHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEET----
T ss_pred HHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccccc----
Confidence 6899999999864422 23344679999999987776654 3334444777777765543211000
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
........|+++|.+.+.+++.++.++ |+++++|.||.|-.+.... ....+...+...-|+..
T Consensus 159 -~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl~R----------- 224 (260)
T d1h5qa_ 159 -NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAH--MDKKIRDHQASNIPLNR----------- 224 (260)
T ss_dssp -TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG--SCHHHHHHHHHTCTTSS-----------
T ss_pred -ccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhc--cCHHHHHHHHhcCCCCC-----------
Confidence 001234689999999999999998775 8999999999997764321 12234444444433221
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+...+|+|.+++.++...... ..|+++.+.+|.
T Consensus 225 -~g~pedvA~~v~fL~S~~s~~----------itG~~i~VDGG~ 257 (260)
T d1h5qa_ 225 -FAQPEEMTGQAILLLSDHATY----------MTGGEYFIDGGQ 257 (260)
T ss_dssp -CBCGGGGHHHHHHHHSGGGTT----------CCSCEEEECTTG
T ss_pred -CcCHHHHHHHHHHHhcchhCC----------CcCceEEECCCe
Confidence 556799999999887654432 455899998875
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=7e-24 Score=193.74 Aligned_cols=230 Identities=16% Similarity=0.073 Sum_probs=162.0
Q ss_pred CCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAG--FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+++||++|||||+| +||++++++|+++|++|++.+|+++..... .+. ........++++|++|.++++++++.+
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~-~~~---~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEA-EKL---AEALGGALLFRADVTQDEELDALFAGV 80 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHH---HHHTTCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHH-HHh---hhccCcccccccccCCHHHHHHHHHHH
Confidence 57899999999987 899999999999999999999864332221 111 122346788999999999999988765
Q ss_pred -----CccEEEEcccccCchh--------hccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY--------AMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~--------~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|++|||||...... ...+.+..+++|+.++..+.+++..... ..++|++||.......
T Consensus 81 ~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~------ 154 (256)
T d1ulua_ 81 KEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV------ 154 (256)
T ss_dssp HHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC------
T ss_pred HHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCC------
Confidence 6899999999754321 1122346899999999998887754321 1379999987664321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.....|++||.+.+.+++.++.++ |+++++|.||.|..+............+.+.+.-|+.
T Consensus 155 ------~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl~---------- 218 (256)
T d1ulua_ 155 ------PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLR---------- 218 (256)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHHHHHSTTS----------
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCCCC----------
Confidence 345789999999999999999875 8999999999998765432221223444444333321
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
-+...+|+|.+++.++...... ..|+++.+.+|-.
T Consensus 219 --R~~~pedvA~~v~fL~S~~s~~----------itG~~i~VDGG~~ 253 (256)
T d1ulua_ 219 --RNITQEEVGNLGLFLLSPLASG----------ITGEVVYVDAGYH 253 (256)
T ss_dssp --SCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGG
T ss_pred --CCcCHHHHHHHHHHHhCchhCC----------ccCCeEEECcCEe
Confidence 1566899999999888765432 4558999988753
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=4.8e-24 Score=192.65 Aligned_cols=205 Identities=16% Similarity=0.073 Sum_probs=155.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+++++||+++||||+++||++++++|+++|++|++++|+.++.+....+... ...++.++.||++|.++++++++.+
T Consensus 2 ~~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~i 78 (244)
T d1yb1a_ 2 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG---LGAKVHTFVVDCSNREDIYSSAKKV 78 (244)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHH
Confidence 5679999999999999999999999999999999999987766555444432 3467999999999999999888755
Q ss_pred -----CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|++|||||....... .+..+..+++|+.|+.++.++ +++.+.+ +||++||...+...
T Consensus 79 ~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G-~Iv~isS~~~~~~~------- 150 (244)
T d1yb1a_ 79 KAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHG-HIVTVASAAGHVSV------- 150 (244)
T ss_dssp HHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCCC-CCCH-------
T ss_pred HHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCc-eEEEeecchhcCCC-------
Confidence 68999999998654322 223457999999998777665 4555544 89999997765321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh------CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY------GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~------~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.....|++||++.+.+.+.++.+. |+++++|+||.|-.+..... .
T Consensus 151 -----~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~--------------~---------- 201 (244)
T d1yb1a_ 151 -----PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP--------------S---------- 201 (244)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT--------------H----------
T ss_pred -----CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCc--------------C----------
Confidence 234779999999999999998762 79999999999876532210 0
Q ss_pred ccccccccHHHHHHHHHHHhhhcc
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
......+..+|+|+.++..+....
T Consensus 202 ~~~~~~~~pe~va~~i~~~~~~~~ 225 (244)
T d1yb1a_ 202 TSLGPTLEPEEVVNRLMHGILTEQ 225 (244)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHTTC
T ss_pred ccccCCCCHHHHHHHHHHHHhcCC
Confidence 001124567999999998877654
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.91 E-value=5.3e-24 Score=192.39 Aligned_cols=225 Identities=16% Similarity=0.148 Sum_probs=166.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.++||++|||||+++||+.+++.|+++|++|++.+|+.+...+..+ . ...++.++++|++|+++++++++.+
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~-----~-~~~~~~~~~~Dls~~~~i~~~~~~i~~ 75 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVA-----A-LEAEAIAVVADVSDPKAVEAVFAEALE 75 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH-----T-CCSSEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----H-cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999997643322211 1 2357889999999999999988876
Q ss_pred ---CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETCKSSDPQP-AIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~-~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|++|||||...... ..++.+..+++|+.++.++.+++.....+. .++++||.+....
T Consensus 76 ~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~------------- 142 (241)
T d2a4ka1 76 EFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA------------- 142 (241)
T ss_dssp HHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH-------------
T ss_pred HhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccc-------------
Confidence 6899999999864422 222335789999999999988876554333 5555555443221
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.....|+.+|++.|.+++.+++++ |+++++|.||.|-.+... .........+....++. -+..
T Consensus 143 ~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~--~~~~~~~~~~~~~~p~~------------r~~~ 208 (241)
T d2a4ka1 143 FGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA--GLPPWAWEQEVGASPLG------------RAGR 208 (241)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGT--TSCHHHHHHHHHTSTTC------------SCBC
T ss_pred cCccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHH--hhhHhHHHHHHhCCCCC------------CCcC
Confidence 234679999999999999999886 799999999999765332 12223444444443322 1667
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
.+|+|++++.++...... ..|+++.+.+|..
T Consensus 209 p~dva~~v~fL~S~~s~~----------itG~~i~vDGG~s 239 (241)
T d2a4ka1 209 PEEVAQAALFLLSEESAY----------ITGQALYVDGGRS 239 (241)
T ss_dssp HHHHHHHHHHHHSGGGTT----------CCSCEEEESTTTT
T ss_pred HHHHHHHHHHHhcchhCC----------CcCceEEeCCCcc
Confidence 899999999988765433 4558999988754
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.91 E-value=7.9e-24 Score=191.49 Aligned_cols=224 Identities=13% Similarity=0.033 Sum_probs=160.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc-hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY-YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+.||||||+++||++++++|+++|++|++.+++... .+......+. ...++.++++|++|.++++++++.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 78 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA---YGGQAITFGGDVSKEADVEAMMKTAIDAWG 78 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH---HTCEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH---cCCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 369999999999999999999999999998765433 2222222221 2357889999999999999888765
Q ss_pred CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
++|++|||||...... ..++.+..+++|+.++.++.+++ ++.+.+ +||++||...+-. .
T Consensus 79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~IVnisS~~~~~~------------~ 145 (244)
T d1edoa_ 79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKG-RIINIASVVGLIG------------N 145 (244)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHC------------C
T ss_pred CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCc-EEEEEcChhhcCC------------C
Confidence 7899999999865432 23344679999999987776654 444444 9999999765421 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTY 302 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 302 (424)
.....|++||.+.+.+++.++.++ |+++++|.||.|-.|.... ......+.+....++. -+..
T Consensus 146 ~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl~------------R~~~ 211 (244)
T d1edoa_ 146 IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK--LGEDMEKKILGTIPLG------------RTGQ 211 (244)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT--TCHHHHHHHHTSCTTC------------SCBC
T ss_pred CCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHH--hhHHHHHHHHhcCCCC------------CCcC
Confidence 345789999999999999999875 8999999999997652211 1123334444433321 1667
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 303 IDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 303 v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.+|+|.+++.+...+..+. ..|+++.+.+|-
T Consensus 212 p~dvA~~v~fLa~S~~a~~---------itG~~i~vdGG~ 242 (244)
T d1edoa_ 212 PENVAGLVEFLALSPAASY---------ITGQAFTIDGGI 242 (244)
T ss_dssp HHHHHHHHHHHHHCSGGGG---------CCSCEEEESTTT
T ss_pred HHHHHHHHHHHHCCchhcC---------CcCCeEEeCCCe
Confidence 8999999998753332211 445899988763
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.91 E-value=3.7e-23 Score=188.16 Aligned_cols=221 Identities=13% Similarity=0.098 Sum_probs=158.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCC-CHHHHHHHhhcc-
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN-DKSLLDKIFNVV- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~v~~~~~~~- 153 (424)
+++||+||||||+++||.+++++|+++|++|++++|+.+..... .+ ........++.++.+|++ +.++++++++.+
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~-~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL-AE-LKAINPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHH-HH-HHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHH-HH-HHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998877653322 21 122334568999999998 666777776655
Q ss_pred ----CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEecCCcccCCCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSS------DPQPAIVWASSSSVYGVNKKVPFSEKDR 223 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~------~~~~~~v~~SS~~vyg~~~~~~~~e~~~ 223 (424)
++|+||||||... .++.+..+++|+.|+.++.+++.+. +...+||++||...+..
T Consensus 80 ~~~g~iDilvnnAG~~~----~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~----------- 144 (254)
T d1sbya1 80 DQLKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNA----------- 144 (254)
T ss_dssp HHHSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSC-----------
T ss_pred HHcCCCCEEEeCCCCCC----HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccC-----------
Confidence 6899999999754 4667899999999988887765432 22347999999776532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCC---CCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 224 TDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWG---RPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 224 ~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
......|++||++...+++.++.++ |+++++|.||.|..|-. ...............+
T Consensus 145 -~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~--------------- 208 (254)
T d1sbya1 145 -IHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLS--------------- 208 (254)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTT---------------
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhcccc---------------
Confidence 1445789999999999999998764 89999999999987510 0000000011111111
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+.....+++|++++.+++... .|+++.+.+|.
T Consensus 209 ~~~~~~e~va~~~~~~~~~~~-------------tG~vi~vdgG~ 240 (254)
T d1sbya1 209 HPTQTSEQCGQNFVKAIEANK-------------NGAIWKLDLGT 240 (254)
T ss_dssp SCCEEHHHHHHHHHHHHHHCC-------------TTCEEEEETTE
T ss_pred CCCCCHHHHHHHHHHhhhCCC-------------CCCEEEECCCE
Confidence 123457999999988876543 22788887763
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.91 E-value=2.7e-23 Score=198.55 Aligned_cols=241 Identities=15% Similarity=0.081 Sum_probs=170.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCH-HHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDK-SLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~v~~~~~~~~~d 156 (424)
+.|+|+|||||||||++|+++|+++|++|+++.|+.++... ......++++++++|+.|. +.+..++... |
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~------~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~--~ 73 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA------EELQAIPNVTLFQGPLLNNVPLMDTLFEGA--H 73 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH------HHHHTSTTEEEEESCCTTCHHHHHHHHTTC--S
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh------hhhcccCCCEEEEeeCCCcHHHHHHHhcCC--c
Confidence 46889999999999999999999999999999997654321 1122346899999999985 4577788876 8
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKK 236 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~ 236 (424)
.++++..... ..|+..+.+++++|++.++. ++++.||......... .+...|..+|.
T Consensus 74 ~~~~~~~~~~------------~~~~~~~~~~~~aa~~agv~-~~v~~Ss~~~~~~~~~----------~~~~~~~~~k~ 130 (350)
T d1xgka_ 74 LAFINTTSQA------------GDEIAIGKDLADAAKRAGTI-QHYIYSSMPDHSLYGP----------WPAVPMWAPKF 130 (350)
T ss_dssp EEEECCCSTT------------SCHHHHHHHHHHHHHHHSCC-SEEEEEECCCGGGTSS----------CCCCTTTHHHH
T ss_pred eEEeeccccc------------chhhhhhhHHHHHHHHhCCC-ceEEEeeccccccCCc----------ccchhhhhhHH
Confidence 8887754321 13566788999999999987 7777787654432211 33456778888
Q ss_pred HHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccH-HHHHHHHHHHhh
Q 042406 237 AGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYI-DDIVKGCLAGLD 315 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v-~Dva~a~~~~~~ 315 (424)
..+.+..+ .+++++++||+.+++......... +.... .......+..+..++..+.++++ +|+++++..++.
T Consensus 131 ~~~~~~~~----~~~~~~~vr~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~ 203 (350)
T d1xgka_ 131 TVENYVRQ----LGLPSTFVYAGIYNNNFTSLPYPL--FQMEL-MPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFK 203 (350)
T ss_dssp HHHHHHHT----SSSCEEEEEECEEGGGCBSSSCSS--CBEEE-CTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----hccCceeeeeceeecccccccccc--ccccc-cccccceeeecccCCCcceEEEeHHHHHHHHHHHHh
Confidence 87776554 388999999999887532211000 00000 11112223334567778888886 799999999987
Q ss_pred hccccCCCCCCCCCCCCcceEEcCCCCcccHHHHHHHHHHHhCccccccccc
Q 042406 316 TAKKSTGSGGKKKGPAEFRIFNLGNTTPVPVSRLVSLLEKILKVKAETKVLP 367 (424)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~el~~~i~~~~g~~~~~~~~~ 367 (424)
..... ..|+.|++++ +.+|+.|+++++.+.+|+++++..+|
T Consensus 204 ~~~~~----------~~G~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp 244 (350)
T d1xgka_ 204 DGPQK----------WNGHRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVP 244 (350)
T ss_dssp HCHHH----------HTTCEEEECS-EEECHHHHHHHHHHHHTSCEEEEECS
T ss_pred CChhh----------cCCeEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECC
Confidence 64321 2238999986 56999999999999999998776655
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.91 E-value=7.8e-24 Score=187.85 Aligned_cols=190 Identities=12% Similarity=0.069 Sum_probs=136.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.|+|||||||||||++|+++|+++|+ +|+++.|+... ..+. +..+..|..++.+.+.. .+|
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-------------~~~~---~~~~~~d~~~~~~~~~~-~~d 64 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------------EHPR---LDNPVGPLAELLPQLDG-SID 64 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------------CCTT---EECCBSCHHHHGGGCCS-CCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-------------hccc---ccccccchhhhhhcccc-chh
Confidence 47899999999999999999999998 56666663321 1122 34455555544443332 469
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKK 236 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~ 236 (424)
+|||++|... ....+.+....+|+.++.+++++|++.+++ +|+++||.++++ .+.+.|+.+|.
T Consensus 65 ~vi~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~-~~i~~Ss~~~~~--------------~~~~~y~~~K~ 127 (212)
T d2a35a1 65 TAFCCLGTTI--KEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSALGADA--------------KSSIFYNRVKG 127 (212)
T ss_dssp EEEECCCCCH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHHHH
T ss_pred eeeeeeeeec--cccccccccccchhhhhhhccccccccccc-cccccccccccc--------------ccccchhHHHH
Confidence 9999998643 234456788999999999999999999986 999999988875 34578999999
Q ss_pred HHHHHHHHHHHHhCC-cEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhh
Q 042406 237 AGEAIAHAYNHIYGL-SITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLD 315 (424)
Q Consensus 237 ~~e~~~~~~~~~~~i-~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 315 (424)
.+|..+++. ++ +++++||+.|||+...... .. .. ..++..+ ....+.+||++|+|++++.+++
T Consensus 128 ~~E~~l~~~----~~~~~~I~Rp~~v~G~~~~~~~-----~~-~~-~~~~~~~-----~~~~~~~i~v~DvA~ai~~~~~ 191 (212)
T d2a35a1 128 ELEQALQEQ----GWPQLTIARPSLLFGPREEFRL-----AE-IL-AAPIARI-----LPGKYHGIEACDLARALWRLAL 191 (212)
T ss_dssp HHHHHHTTS----CCSEEEEEECCSEESTTSCEEG-----GG-GT-TCCCC---------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhcccc----ccccceeeCCcceeCCcccccH-----HH-HH-HHHHhhc-----cCCCCcEEEHHHHHHHHHHHHc
Confidence 999877643 65 5999999999999764321 00 11 1222111 1123567999999999999988
Q ss_pred hcc
Q 042406 316 TAK 318 (424)
Q Consensus 316 ~~~ 318 (424)
++.
T Consensus 192 ~~~ 194 (212)
T d2a35a1 192 EEG 194 (212)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.91 E-value=1.5e-22 Score=186.34 Aligned_cols=234 Identities=11% Similarity=0.040 Sum_probs=164.7
Q ss_pred CCCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhh-hHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh
Q 042406 73 RPRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET-SLKKARKGLLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 73 ~~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
.+.+++||++|||||+++||+++++.|+++|++|++.+|+.+...+ .....+ .....+.++++|++|++++.++++
T Consensus 12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~---~~g~~~~~~~~D~~~~~~v~~~~~ 88 (272)
T d1g0oa_ 12 QSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIK---KNGSDAACVKANVGVVEDIVRMFE 88 (272)
T ss_dssp GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHH
T ss_pred CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHH---hhCCceeeEeCCCCCHHHHHHHHH
Confidence 3457999999999999999999999999999999999987543222 222221 134578999999999999998887
Q ss_pred cc-----CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCC
Q 042406 152 VV-----AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 152 ~~-----~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
.+ ++|++|||+|....... .++.+..+++|+.++.++.+++..... ..++++++|......
T Consensus 89 ~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~--------- 159 (272)
T d1g0oa_ 89 EAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK--------- 159 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS---------
T ss_pred HHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccccc---------
Confidence 66 68999999998654322 223356899999999998888765432 236777776433211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCC----------CCCCcHHHHH-HHHHcCCceeE
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWG----------RPDMAYFFFT-RDIIRGKRITV 287 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~----------~~~~~~~~~~-~~~~~~~~~~~ 287 (424)
.......|+++|++.+.+++.++.++ ||++++|+||.|-.+.. .......... .......++.
T Consensus 160 --~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Plg- 236 (272)
T d1g0oa_ 160 --AVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPLR- 236 (272)
T ss_dssp --SCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTTC-
T ss_pred --cccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccCCCC-
Confidence 11345779999999999999998875 89999999999975410 0010011111 1122222211
Q ss_pred EecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 288 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
-+...+|+|.+++.++...... .+|+++.|.+|.
T Consensus 237 -----------R~~~peevA~~v~fL~s~~s~~----------itG~~i~vDGG~ 270 (272)
T d1g0oa_ 237 -----------RVGLPIDIARVVCFLASNDGGW----------VTGKVIGIDGGA 270 (272)
T ss_dssp -----------SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred -----------CCcCHHHHHHHHHHHhCchhcC----------ccCceEeECCCC
Confidence 2677899999999988755432 455899998874
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.7e-23 Score=189.51 Aligned_cols=218 Identities=17% Similarity=0.112 Sum_probs=155.9
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+.++++|++|||||+++||.++++.|+++|++|++.+|+.+..+....+.... .....+.+++||++|+++++++++.+
T Consensus 5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~-~~~~~~~~~~~Dls~~~~v~~~v~~~ 83 (257)
T d1xg5a_ 5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSA-GYPGTLIPYRCDLSNEEDILSMFSAI 83 (257)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCCceEEEEEccCCCHHHHHHHHHHH
Confidence 45588999999999999999999999999999999999766555544433332 12347889999999999999988776
Q ss_pred -----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCC-CCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDP-QPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~-~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|++|||||...... ..++.+..+++|+.++..+.+++ ++.+. ..++|++||.+.+...
T Consensus 84 ~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------ 157 (257)
T d1xg5a_ 84 RSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL------ 157 (257)
T ss_dssp HHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC------
T ss_pred HHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC------
Confidence 6899999999865432 23334679999999987765554 44432 3499999997765321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEEeccccCCCCC--CCCcHHHHHHHHHcCCceeEEecCC
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHI-----YGLSITGLRFFTVYGPWGR--PDMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~-----~~i~~~~vrp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
+......|+.+|.+.+.+++.++.+ +++++++|.||.+-.+... .+... ..+... .+.
T Consensus 158 ----p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~----~~~~~~--~~~----- 222 (257)
T d1xg5a_ 158 ----PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDP----EKAAAT--YEQ----- 222 (257)
T ss_dssp ----SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCH----HHHHHH--HC------
T ss_pred ----CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhH----HHHHhc--CCC-----
Confidence 1123456999999999999998864 3799999999988654210 01111 111111 111
Q ss_pred CCccccccccHHHHHHHHHHHhhhcc
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
.-++..+|+|.+++.++..+.
T Consensus 223 -----~r~~~pedvA~~v~fL~s~~a 243 (257)
T d1xg5a_ 223 -----MKCLKPEDVAEAVIYVLSTPA 243 (257)
T ss_dssp -------CBCHHHHHHHHHHHHHSCT
T ss_pred -----CCCcCHHHHHHHHHHHhCChh
Confidence 126779999999998887664
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.90 E-value=6.8e-23 Score=184.82 Aligned_cols=199 Identities=16% Similarity=0.159 Sum_probs=150.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCe-------EEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDG-------VLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~-------V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.||||||+++||+++++.|+++|++ |++.+|+.+..+....+... ....+.++.+|++|.++++++++.+
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~---~g~~~~~~~~Dvt~~~~v~~~~~~~ 79 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRA---EGALTDTITADISDMADVRRLTTHI 79 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHT---TTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEecCCCHHHHHHHHHHH
Confidence 4899999999999999999999987 88999976655444333322 2356889999999999999888765
Q ss_pred -----CccEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
++|+||||||...... ..++.+..+++|+.|+..+.+++ ++.+.+ ++|++||.+.+...
T Consensus 80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G-~Ii~isS~~~~~~~------- 151 (240)
T d2bd0a1 80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSG-HIFFITSVAATKAF------- 151 (240)
T ss_dssp HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC-------
T ss_pred HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCC-ceEEEechhhcCCC-------
Confidence 6899999999865432 23344679999999987766655 444444 89999997765421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.....|++||++.+.+++.++.++ |+++++|.||.|-.|....- .....
T Consensus 152 -----~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~-----------------------~~~~~ 203 (240)
T d2bd0a1 152 -----RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV-----------------------DDEMQ 203 (240)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC-----------------------CSTTG
T ss_pred -----CCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhc-----------------------CHhhH
Confidence 345789999999999999998774 89999999999987632210 01112
Q ss_pred cccccHHHHHHHHHHHhhhcc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~ 318 (424)
..+...+|+|++++.++.++.
T Consensus 204 ~~~~~PedvA~~v~~l~s~~~ 224 (240)
T d2bd0a1 204 ALMMMPEDIAAPVVQAYLQPS 224 (240)
T ss_dssp GGSBCHHHHHHHHHHHHTSCT
T ss_pred hcCCCHHHHHHHHHHHHcCCc
Confidence 235678999999999887765
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.90 E-value=6.8e-23 Score=188.92 Aligned_cols=225 Identities=14% Similarity=0.129 Sum_probs=157.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+++||++|||||+++||++++++|+++|++|++++|+.+...+... + ...++.++.+|++|.++++++++.+
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~----~--~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 75 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELET----D--HGDNVLGIVGDVRSLEDQKQAASRCVA 75 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----H--HGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----H--cCCCeeEEecccccHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999997554333221 1 2357899999999999998887765
Q ss_pred ---CccEEEEcccccCchhh-----cc----ChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCC
Q 042406 154 ---AFTHVMHLAAQAGVRYA-----MQ----NPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVP 217 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~-----~~----~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~ 217 (424)
++|++|||||....... .+ +.+..+++|+.|+..+.+++ ++.+ + ++|++||...+-.
T Consensus 76 ~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g-~iI~i~S~~~~~~----- 148 (276)
T d1bdba_ 76 RFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-G-NVIFTISNAGFYP----- 148 (276)
T ss_dssp HHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C-EEEEECCGGGTST-----
T ss_pred HhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-C-CceeeeechhccC-----
Confidence 78999999997543211 11 24678999999987776654 4443 3 7888887554321
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEEeccccCCCCCCCC--------cHHHHHHHHHcCCceeE
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHIY--GLSITGLRFFTVYGPWGRPDM--------AYFFFTRDIIRGKRITV 287 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~--~i~~~~vrp~~v~G~~~~~~~--------~~~~~~~~~~~~~~~~~ 287 (424)
......|++||.+.+.+++.++.++ ++++++|.||.|-.+-..+.. ....+...+....|+..
T Consensus 149 -------~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~PlgR 221 (276)
T d1bdba_ 149 -------NGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIGR 221 (276)
T ss_dssp -------TSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTSS
T ss_pred -------CCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCCC
Confidence 1335779999999999999999875 599999999999765322110 00112222222222211
Q ss_pred EecCCCCccccccccHHHHHHHHHHHhhhc-cccCCCCCCCCCCCCcceEEcCCCC
Q 042406 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTA-KKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 288 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+...+|+|.+++.++..+ ... ..|++++|.+|-
T Consensus 222 ------------~g~peeva~~v~fL~S~~~a~~----------itG~~i~VDGG~ 255 (276)
T d1bdba_ 222 ------------MPEVEEYTGAYVFFATRGDAAP----------ATGALLNYDGGL 255 (276)
T ss_dssp ------------CCCGGGGSHHHHHHHCHHHHTT----------CSSCEEEESSSG
T ss_pred ------------CcCHHHHHHHHHHHcCCcccCC----------eeCcEEEECcCh
Confidence 556799999998877532 221 445899998763
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=8.5e-23 Score=183.68 Aligned_cols=216 Identities=13% Similarity=0.051 Sum_probs=154.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-Cc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-AF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~~ 155 (424)
+++|++|||||+++||+++++.|+++|++|++.+|+.+.. ...+.+++.+|+++. ++.++++. ++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l------------~~~~~~~~~~Dv~~~--~~~~~~~~g~i 67 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL------------KRSGHRYVVCDLRKD--LDLLFEKVKEV 67 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH------------HHTCSEEEECCTTTC--HHHHHHHSCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH------------HhcCCcEEEcchHHH--HHHHHHHhCCC
Confidence 5799999999999999999999999999999999953211 123457889999863 44555544 57
Q ss_pred cEEEEcccccCchh----hccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCC
Q 042406 156 THVMHLAAQAGVRY----AMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQP 227 (424)
Q Consensus 156 d~vi~~Ag~~~~~~----~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~ 227 (424)
|++|||||...... ..++.+..+++|+.++..+.+++ ++.+.+ ++|++||...... ...
T Consensus 68 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G-~ii~i~S~~~~~~------------~~~ 134 (234)
T d1o5ia_ 68 DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWG-RIVAITSFSVISP------------IEN 134 (234)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSC------------CTT
T ss_pred cEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccc-ccccccccccccc------------ccc
Confidence 99999999754422 23334678999999977776654 444544 8999998766542 134
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHH
Q 042406 228 ASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYID 304 (424)
Q Consensus 228 ~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 304 (424)
...|+.+|.+.+.+++.++.++ |+++++|.||.+-.+..... ........+...-++. -+...+
T Consensus 135 ~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~-~~~~~~~~~~~~~pl~------------R~~~pe 201 (234)
T d1o5ia_ 135 LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKEL-LSEEKKKQVESQIPMR------------RMAKPE 201 (234)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHH-SCHHHHHHHHTTSTTS------------SCBCHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhh-cCHHHHHHHHhcCCCC------------CCcCHH
Confidence 5789999999999999998775 89999999999977632110 0112223333332221 267789
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 305 DIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 305 Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
|+|.+++.++...... ..|+++.+.+|-
T Consensus 202 diA~~v~fL~S~~s~~----------itG~~i~vDGG~ 229 (234)
T d1o5ia_ 202 EIASVVAFLCSEKASY----------LTGQTIVVDGGL 229 (234)
T ss_dssp HHHHHHHHHHSGGGTT----------CCSCEEEESTTC
T ss_pred HHHHHHHHHhChhhcC----------CcCcEEEECccc
Confidence 9999999888654432 455899998763
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.90 E-value=3.6e-22 Score=186.03 Aligned_cols=235 Identities=10% Similarity=0.045 Sum_probs=165.5
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
.+++||++|||||+|+||++++++|+++|++|++++|+.+.......+.... ....+.++.+|++|.++++++++..
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~--~g~~~~~~~~D~~~~~~v~~~~~~~~ 98 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ--TGNKVHAIQCDVRDPDMVQNTVSELI 98 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--HSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh--cCCceEEEEecccChHHHHHHhhhhh
Confidence 4789999999999999999999999999999999999876655544433322 3467889999999999998877655
Q ss_pred ----CccEEEEcccccCchhhcc----ChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRYAMQ----NPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEK 221 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~~~~----~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~ 221 (424)
++|++|||||......... +....+.+|..+...+...+ ........++.+||.......
T Consensus 99 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~-------- 170 (294)
T d1w6ua_ 99 KVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS-------- 170 (294)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC--------
T ss_pred hhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcc--------
Confidence 7899999999865432222 23457788888766654443 333333367777775543211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCC-CcHHHHHHHHHcCCceeEEecCCCCccc
Q 042406 222 DRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPD-MAYFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 222 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
.....|+++|.+.+.+++.++.++ ||++++|.||.|..+..... .............-++.
T Consensus 171 ----~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~----------- 235 (294)
T d1w6ua_ 171 ----GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCG----------- 235 (294)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTS-----------
T ss_pred ----cccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCCC-----------
Confidence 334679999999999999999775 89999999999987643211 00112334444433321
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
-+...+|+|.+++.++...... ..|+++.+.+|..+.
T Consensus 236 -R~~~pediA~~v~fL~sd~s~~----------itG~~i~vDGG~~l~ 272 (294)
T d1w6ua_ 236 -RLGTVEELANLAAFLCSDYASW----------INGAVIKFDGGEEVL 272 (294)
T ss_dssp -SCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTHHHH
T ss_pred -CCCCHHHHHHHHHHHhCchhcC----------CCCcEEEECCChhhe
Confidence 1567899999999988755432 455899999886433
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2e-22 Score=182.30 Aligned_cols=224 Identities=15% Similarity=0.134 Sum_probs=164.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-C
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-A 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-~ 154 (424)
+++||++|||||+++||+++++.|+++|++|++.+|+++..+ +.....++....+|+.+.+.++...+.. +
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~--------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 74 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQ--------ELEKYPGIQTRVLDVTKKKQIDQFANEVER 74 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHG--------GGGGSTTEEEEECCTTCHHHHHHHHHHCSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH--------HHHhccCCceeeeecccccccccccccccc
Confidence 489999999999999999999999999999999999643221 2223467889999999998888877766 6
Q ss_pred ccEEEEcccccCchhhc----cChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCCcc-cCCCCCCCCCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRYAM----QNPNSYVESNIAGFVNLLETCK----SSDPQPAIVWASSSSV-YGVNKKVPFSEKDRTD 225 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~----~~~~~~~~~N~~g~~~ll~a~~----~~~~~~~~v~~SS~~v-yg~~~~~~~~e~~~~~ 225 (424)
+|+||||||........ ++.+..+++|+.++..+.+++. +.+.+ ++|++||... .. +.
T Consensus 75 id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g-~Ii~isS~~~~~~------------~~ 141 (245)
T d2ag5a1 75 LDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSG-NIINMSSVASSVK------------GV 141 (245)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCSBTTTB------------CC
T ss_pred ceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCc-eeeeeechhhccC------------Cc
Confidence 89999999987653222 2335799999999888877654 33433 8999987533 11 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC----CCcHHHHHHHHHcCCceeEEecCCCCcccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP----DMAYFFFTRDIIRGKRITVYEAPDGASVAR 298 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (424)
.....|+.+|.+.+.+++.++.++ |+++++|.||.|-+|.... ......+...+....++.
T Consensus 142 ~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~------------ 209 (245)
T d2ag5a1 142 VNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTG------------ 209 (245)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTS------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCCC------------
Confidence 445789999999999999999875 8999999999998763210 000112333333333221
Q ss_pred ccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 299 DFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 299 ~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
-+...+|+|+++..++...... ..|+++.|.+|-
T Consensus 210 R~~~pedva~~v~fL~s~~s~~----------iTG~~i~VDGG~ 243 (245)
T d2ag5a1 210 RFATAEEIAMLCVYLASDESAY----------VTGNPVIIDGGW 243 (245)
T ss_dssp SCEEHHHHHHHHHHHHSGGGTT----------CCSCEEEECTTG
T ss_pred CCcCHHHHHHHHHHHhChhhCC----------CcCceEEeCCCc
Confidence 2667899999999988765533 455899998874
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.89 E-value=7.5e-23 Score=190.61 Aligned_cols=218 Identities=17% Similarity=0.068 Sum_probs=152.7
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch-----hhhHHHHHhhhhccCCeEEEEccCCCHHHHHH
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY-----ETSLKKARKGLLERAGVFVIDADINDKSLLDK 148 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-----~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~ 148 (424)
+++++||++|||||+++||+++++.|+++|++|++.+|+.+.. .....+...+ . ......+.+|++|.+++++
T Consensus 2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~d~~~~~~~~~ 79 (302)
T d1gz6a_ 2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEE-I-RRRGGKAVANYDSVEAGEK 79 (302)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHH-H-HHTTCEEEEECCCGGGHHH
T ss_pred CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHH-H-hhcccccccccchHHHHHH
Confidence 4568999999999999999999999999999999999875432 1111111111 1 1234566789999887777
Q ss_pred Hhhcc-----CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCC
Q 042406 149 IFNVV-----AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKK 215 (424)
Q Consensus 149 ~~~~~-----~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~ 215 (424)
+++.+ ++|+||||||+...... .++.+..+++|+.|+.++.+++ ++.+.+ +||++||.+.+...
T Consensus 80 ~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G-~IV~isS~~~~~~~-- 156 (302)
T d1gz6a_ 80 LVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYG-RIIMTASASGIYGN-- 156 (302)
T ss_dssp HHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHHCC--
T ss_pred HHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCc-EEEEeCChhhcCCC--
Confidence 66544 68999999998654322 2334679999999988776664 455544 99999996654211
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCC
Q 042406 216 VPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPD 292 (424)
Q Consensus 216 ~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (424)
.....|++||++.+.+++.++.++ ||++++|.||.+-.+.... +
T Consensus 157 ----------~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~------~----------------- 203 (302)
T d1gz6a_ 157 ----------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETV------M----------------- 203 (302)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGG------S-----------------
T ss_pred ----------CCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhc------C-----------------
Confidence 345789999999999999999774 8999999999774331110 0
Q ss_pred CCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 293 GASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 293 ~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
.+.....+..+|+|.+++.+...... ..|+++.+.+|
T Consensus 204 -~~~~~~~~~PedvA~~v~fL~S~~a~-----------itG~~i~vdGG 240 (302)
T d1gz6a_ 204 -PEDLVEALKPEYVAPLVLWLCHESCE-----------ENGGLFEVGAG 240 (302)
T ss_dssp -CHHHHHHSCGGGTHHHHHHHTSTTCC-----------CCSCEEEEETT
T ss_pred -cHhhHhcCCHHHHHHHHHHHcCCCcC-----------CCCcEEEeCCC
Confidence 01112244568999999988754322 23367777665
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.88 E-value=2.4e-22 Score=182.72 Aligned_cols=218 Identities=12% Similarity=0.046 Sum_probs=155.3
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----Cc
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-----AF 155 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-----~~ 155 (424)
++|||||+++||+.+++.|+++|++|++.+|+.+..++.... . ..+.++|++|.++++++++.+ ++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~-~--------~~~~~~dv~~~~~~~~~~~~~~~~~G~i 72 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAF-A--------ETYPQLKPMSEQEPAELIEAVTSAYGQV 72 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHH-H--------HHCTTSEECCCCSHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhh-h--------CcEEEeccCCHHHHHHHHHHHHHHcCCC
Confidence 689999999999999999999999999999976554332211 1 123457888888777776654 68
Q ss_pred cEEEEcccccCc-h----hhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCC
Q 042406 156 THVMHLAAQAGV-R----YAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQ 226 (424)
Q Consensus 156 d~vi~~Ag~~~~-~----~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~ 226 (424)
|++|||||.... . ...++.+..+++|+.++.++.+++ ++.+.+ +||++||.+.+... .
T Consensus 73 DiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G-~IV~isS~~~~~~~------------~ 139 (252)
T d1zmta1 73 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSG-HIIFITSATPFGPW------------K 139 (252)
T ss_dssp CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCSTTTSCC------------T
T ss_pred CEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccc-eeeccccccccccc------------c
Confidence 999999997532 1 122334678999999987776654 444544 89999998765421 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCc------HHHHHHHHHcCCceeEEecCCCCccc
Q 042406 227 PASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMA------YFFFTRDIIRGKRITVYEAPDGASVA 297 (424)
Q Consensus 227 ~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (424)
....|+.||.+.+.+++.++.++ ||++++|.||.|-.+....... .+.....+.+..++..
T Consensus 140 ~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~R---------- 209 (252)
T d1zmta1 140 ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQR---------- 209 (252)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSS----------
T ss_pred cccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCCC----------
Confidence 34789999999999999998775 8999999999998764322110 1123333333322211
Q ss_pred cccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 298 RDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 298 ~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
+...+|+|.+++.++...... ..|+++.|.+|-
T Consensus 210 --~g~pedvA~~v~fL~S~~s~~----------iTG~~i~vdGG~ 242 (252)
T d1zmta1 210 --LGTQKELGELVAFLASGSCDY----------LTGQVFWLAGGF 242 (252)
T ss_dssp --CBCHHHHHHHHHHHHTTSCGG----------GTTCEEEESTTC
T ss_pred --CcCHHHHHHHHHHHhCchhcC----------CcCCeEEECCCc
Confidence 567899999999988665433 455899998874
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=2.6e-22 Score=183.44 Aligned_cols=217 Identities=13% Similarity=0.069 Sum_probs=154.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHh---CCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKK---RGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~---~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
.++||+++||||+++||++++++|++ +|++|++++|+.+..+....+.... ....++.++.+|++|+++++++++.
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~-~~~~~~~~~~~Dvs~~~~v~~l~~~ 81 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQ-QPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHH-CTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhh-cCCceEEEEEccCCCHHHHHHHHHH
Confidence 57899999999999999999999986 7999999999776655544433322 2235789999999999999888753
Q ss_pred c---------CccEEEEcccccCch----hhc---cChHHHHHHHHHHHHHHHHHHHhcCC-----CCeEEEecCCcccC
Q 042406 153 V---------AFTHVMHLAAQAGVR----YAM---QNPNSYVESNIAGFVNLLETCKSSDP-----QPAIVWASSSSVYG 211 (424)
Q Consensus 153 ~---------~~d~vi~~Ag~~~~~----~~~---~~~~~~~~~N~~g~~~ll~a~~~~~~-----~~~~v~~SS~~vyg 211 (424)
+ .+|++|||||..... ..+ ++.+..+++|+.++.++.+++..... ..+||++||...+.
T Consensus 82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~ 161 (259)
T d1oaaa_ 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence 2 568999999975321 112 22356899999999999888765432 23899999976643
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEEeccccCCCCCC---CCcHHHHHHHHHcCCceeE
Q 042406 212 VNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-GLSITGLRFFTVYGPWGRP---DMAYFFFTRDIIRGKRITV 287 (424)
Q Consensus 212 ~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~i~~~~vrp~~v~G~~~~~---~~~~~~~~~~~~~~~~~~~ 287 (424)
. ......|++||.+.+.+++.++.+. |+++++|.||.|..+.... ....+.....+....+
T Consensus 162 ~------------~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~--- 226 (259)
T d1oaaa_ 162 P------------YKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKS--- 226 (259)
T ss_dssp C------------CTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHH---
T ss_pred C------------CccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhcCC---
Confidence 2 1345889999999999999998764 8999999999998762110 0000011111111111
Q ss_pred EecCCCCccccccccHHHHHHHHHHHhhhc
Q 042406 288 YEAPDGASVARDFTYIDDIVKGCLAGLDTA 317 (424)
Q Consensus 288 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~ 317 (424)
..-+...+|+|++++.++.+.
T Consensus 227 ---------~~r~~~p~evA~~i~~ll~~~ 247 (259)
T d1oaaa_ 227 ---------DGALVDCGTSAQKLLGLLQKD 247 (259)
T ss_dssp ---------TTCSBCHHHHHHHHHHHHHHC
T ss_pred ---------CCCCCCHHHHHHHHHHHhhhc
Confidence 011467899999999988754
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.87 E-value=5.4e-21 Score=173.49 Aligned_cols=173 Identities=15% Similarity=0.073 Sum_probs=129.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHH---hCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 79 GLTVLVTGAAGFVGSHVSLALK---KRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~---~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
||+||||||+++||++++++|+ ++|++|++.+|+.+..+.... .. ....++.++.+|++|.++++++++.+
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~-~~---~~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 77 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED-LA---KNHSNIHILEIDLRNFDAYDKLVADIEG 77 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHH-HH---HHCTTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HH---hcCCcEEEEEEEeccHHHHHHHHhhhHH
Confidence 6899999999999999999997 479999999999877654322 11 13468999999999999988877642
Q ss_pred -----CccEEEEcccccCch--hhccC---hHHHHHHHHHHHHHHHHHHH----hc----------CCCCeEEEecCCcc
Q 042406 154 -----AFTHVMHLAAQAGVR--YAMQN---PNSYVESNIAGFVNLLETCK----SS----------DPQPAIVWASSSSV 209 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~--~~~~~---~~~~~~~N~~g~~~ll~a~~----~~----------~~~~~~v~~SS~~v 209 (424)
++|++|||||+.... ..+.+ .+..+++|+.|+..+.+++. +. ....++|++||...
T Consensus 78 ~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g 157 (248)
T d1snya_ 78 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG 157 (248)
T ss_dssp HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGG
T ss_pred HhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccccccc
Confidence 589999999985432 11222 35689999999887766542 21 11238999998543
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 042406 210 YGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGP 264 (424)
Q Consensus 210 yg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~ 264 (424)
.-.. .+......|++||++...+++.++.++ |+++++|+||.|-.+
T Consensus 158 ~~~~---------~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 158 SIQG---------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp CSTT---------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCST
T ss_pred ccCC---------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCC
Confidence 2110 011335689999999999999998664 899999999999776
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.6e-21 Score=180.37 Aligned_cols=173 Identities=16% Similarity=0.116 Sum_probs=128.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeC---CCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN---FNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r---~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
.|.||||||+++||+++++.|+++|++|+.+++ +.+.................++.++.+|++|.+++.++++.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 456899999999999999999999987665544 322222211111221223467999999999999999998776
Q ss_pred -CccEEEEcccccCchhh----ccChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 154 -AFTHVMHLAAQAGVRYA----MQNPNSYVESNIAGFVNLLET----CKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~~----~~~~~~~~~~N~~g~~~ll~a----~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
.+|+||||||....... .++.+..+++|+.|+.++.++ +++.+.+ +||++||.+....
T Consensus 82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G-~Iv~isS~~g~~~------------ 148 (285)
T d1jtva_ 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSG-RVLVTGSVGGLMG------------ 148 (285)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEEEEGGGTSC------------
T ss_pred cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCC-ceEEEechhhcCC------------
Confidence 68999999998654322 233457899999998776665 4555544 8999999766432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCC
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGP 264 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~ 264 (424)
......|++||++.+.+++.++.++ |+++++|+||.|-.+
T Consensus 149 ~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 149 LPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 1345789999999999999999774 899999999999765
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.9e-21 Score=177.11 Aligned_cols=209 Identities=14% Similarity=0.050 Sum_probs=148.8
Q ss_pred CCCeE-EEEcCCChhHHHHHHHHHhC-CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 78 RGLTV-LVTGAAGFVGSHVSLALKKR-GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 78 ~~~~v-lItGg~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+||+| |||||+++||++++++|+++ |++|++.+|+.++.+....+.+.. ..++.++.+|++|.++++++++.+
T Consensus 1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~---~~~~~~~~~Dvs~~~sv~~~~~~~~~ 77 (275)
T d1wmaa1 1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE---GLSPRFHQLDIDDLQSIRALRDFLRK 77 (275)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc---CCcEEEEEEecCCHHHHHHHHHHHHH
Confidence 35665 89999999999999999986 899999999887766655554432 457899999999999999888766
Q ss_pred ---CccEEEEcccccCchhhcc----ChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCC-CCCCC-------
Q 042406 154 ---AFTHVMHLAAQAGVRYAMQ----NPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGV-NKKVP------- 217 (424)
Q Consensus 154 ---~~d~vi~~Ag~~~~~~~~~----~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~-~~~~~------- 217 (424)
++|+||||||+.......+ +.+..+++|+.|+..+.+++.... ...++|++||...... ....+
T Consensus 78 ~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~ 157 (275)
T d1wmaa1 78 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFR 157 (275)
T ss_dssp HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHH
T ss_pred hcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhc
Confidence 7899999999865433222 234689999999999988876532 1138999999544210 00000
Q ss_pred ---------------------CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-------CCcEEEEEeccccCCCCCCC
Q 042406 218 ---------------------FSEKDRTDQPASLYAATKKAGEAIAHAYNHIY-------GLSITGLRFFTVYGPWGRPD 269 (424)
Q Consensus 218 ---------------------~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-------~i~~~~vrp~~v~G~~~~~~ 269 (424)
.........+...|+.||++...+.+.+++++ |+++++|+||.|-.+-..+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~~~ 237 (275)
T d1wmaa1 158 SETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPK 237 (275)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCTT
T ss_pred ccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCcccCc
Confidence 00001112455789999999988887766543 89999999999976522110
Q ss_pred CcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhcc
Q 042406 270 MAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
-....+|.|+.++.+...+.
T Consensus 238 -----------------------------~~~~pee~A~~~~~~a~~~~ 257 (275)
T d1wmaa1 238 -----------------------------ATKSPEEGAETPVYLALLPP 257 (275)
T ss_dssp -----------------------------CSBCHHHHTHHHHHHHSCCT
T ss_pred -----------------------------ccCCHHHHHHHHHHHHcCCh
Confidence 02347899998887765443
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.1e-20 Score=171.45 Aligned_cols=210 Identities=15% Similarity=0.119 Sum_probs=150.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
++++||++|||||+++||++++++|+++|++|++++|+.+..+...++. ........+|+.+.+.+++.++..
T Consensus 1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (248)
T d2o23a1 1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL------GNNCVFAPADVTSEKDVQTALALAK 74 (248)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH------CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh------CCCcccccccccccccccccccccc
Confidence 4689999999999999999999999999999999999887655443322 357788999999988877666544
Q ss_pred ----CccEEEEcccccCchh----------hccChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCCccc
Q 042406 154 ----AFTHVMHLAAQAGVRY----------AMQNPNSYVESNIAGFVNLLETCKSS---------DPQPAIVWASSSSVY 210 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~----------~~~~~~~~~~~N~~g~~~ll~a~~~~---------~~~~~~v~~SS~~vy 210 (424)
..|.++++++...... ..+..+..+++|+.++.++.+++... ....+||++||.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~ 154 (248)
T d2o23a1 75 GKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF 154 (248)
T ss_dssp HHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred cccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhc
Confidence 5799999887643211 11233578999999999888877442 112279999997765
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeE
Q 042406 211 GVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITV 287 (424)
Q Consensus 211 g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~ 287 (424)
.. ......|++||.+.+.+++.++.++ |+++++|.||.+..+.... ....+...+....++
T Consensus 155 ~~------------~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl-- 218 (248)
T d2o23a1 155 EG------------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS--LPEKVCNFLASQVPF-- 218 (248)
T ss_dssp HC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC------------CHHHHTCSS--
T ss_pred cC------------CCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhc--CCHHHHHHHHhcCCC--
Confidence 32 1345789999999999999999875 8999999999998764321 111122222222211
Q ss_pred EecCCCCccccccccHHHHHHHHHHHhh
Q 042406 288 YEAPDGASVARDFTYIDDIVKGCLAGLD 315 (424)
Q Consensus 288 ~~~~~~~~~~~~~i~v~Dva~a~~~~~~ 315 (424)
.+ -+...+|+|.+++.+++
T Consensus 219 -----~~----R~g~peevA~~v~fL~s 237 (248)
T d2o23a1 219 -----PS----RLGDPAEYAHLVQAIIE 237 (248)
T ss_dssp -----SC----SCBCHHHHHHHHHHHHH
T ss_pred -----CC----CCcCHHHHHHHHHHHHh
Confidence 01 15678999999998875
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.86 E-value=1.5e-20 Score=170.74 Aligned_cols=202 Identities=13% Similarity=0.077 Sum_probs=137.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
+.|+||||||+++||++++++|+++|+ .|++.+|+.++.++. . .....++.++.+|++|.++++++++.+
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l----~--~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 75 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL----K--SIKDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHH----H--TCCCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHH----H--HhhCCceEEEEEecCCHHHHHHHHHHHHH
Confidence 468999999999999999999999996 688888876544321 1 123457999999999999988877654
Q ss_pred -----CccEEEEcccccCch--hh---ccChHHHHHHHHHHHHHHHHHHH----hcC----------CCCeEEEecCCcc
Q 042406 154 -----AFTHVMHLAAQAGVR--YA---MQNPNSYVESNIAGFVNLLETCK----SSD----------PQPAIVWASSSSV 209 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~--~~---~~~~~~~~~~N~~g~~~ll~a~~----~~~----------~~~~~v~~SS~~v 209 (424)
++|+||||||+.... .. .++.+..+++|+.|+.++.+++. +.+ ...+++.+|+...
T Consensus 76 ~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~ 155 (250)
T d1yo6a1 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred HhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccc
Confidence 489999999985431 11 12235799999999888766653 211 1126777777544
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCcee
Q 042406 210 YGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRIT 286 (424)
Q Consensus 210 yg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~ 286 (424)
+-..... .....+...|++||++...+++.++.++ |+++++|+||.|-.+-...
T Consensus 156 ~~~~~~~-----~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~~------------------ 212 (250)
T d1yo6a1 156 SITDNTS-----GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK------------------ 212 (250)
T ss_dssp CSTTCCS-----TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------------
T ss_pred cccCCcc-----cccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCCC------------------
Confidence 3221100 0111344679999999999999999774 8999999999886541110
Q ss_pred EEecCCCCccccccccHHHHHHHHHHHhhhccc
Q 042406 287 VYEAPDGASVARDFTYIDDIVKGCLAGLDTAKK 319 (424)
Q Consensus 287 ~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 319 (424)
. ..+..++.++.++..+.....
T Consensus 213 --------~---~~~~~e~~a~~~~~~~~~~~~ 234 (250)
T d1yo6a1 213 --------N---AALTVEQSTAELISSFNKLDN 234 (250)
T ss_dssp -----------------HHHHHHHHHHHTTCCG
T ss_pred --------C---CCCCHHHHHHHHHHHHhcCCC
Confidence 0 123468888888888876543
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.85 E-value=1.3e-20 Score=172.10 Aligned_cols=208 Identities=21% Similarity=0.126 Sum_probs=147.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
+.+||||||+|+||++++++|+++|+ .|+++.|+....+........-.....++.++.+|++|.++++++++.+
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~ 88 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDV 88 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccccc
Confidence 45899999999999999999999998 5888888643322222211111123457999999999999999998876
Q ss_pred CccEEEEcccccCchhhcc----ChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCC
Q 042406 154 AFTHVMHLAAQAGVRYAMQ----NPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPAS 229 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~----~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~ 229 (424)
++|.||||||........+ +.+..+++|+.|+.++.+++...+.+ +||++||....-.. ....
T Consensus 89 ~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~-~iv~~SS~a~~~g~------------~~~~ 155 (259)
T d2fr1a1 89 PLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLT-AFVLFSSFASAFGA------------PGLG 155 (259)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTCC------------TTCT
T ss_pred cccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCc-eEeeecchhhccCC------------cccH
Confidence 5899999999865432222 23457899999999999988887665 89999996654321 3457
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHH
Q 042406 230 LYAATKKAGEAIAHAYNHIYGLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKG 309 (424)
Q Consensus 230 ~Y~~sK~~~e~~~~~~~~~~~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a 309 (424)
.|+++|...+.+.+++... |+++++|+||.+.+++..... .. ..+.. .+ ...+..++++++
T Consensus 156 ~YaAaka~l~~la~~~~~~-Gi~v~~I~pg~~~~~g~~~~~----~~-~~~~~----------~G---~~~~~~~~~~~~ 216 (259)
T d2fr1a1 156 GYAPGNAYLDGLAQQRRSD-GLPATAVAWGTWAGSGMAEGP----VA-DRFRR----------HG---VIEMPPETACRA 216 (259)
T ss_dssp TTHHHHHHHHHHHHHHHHT-TCCCEEEEECCBC-----------------CTT----------TT---EECBCHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhC-CCCEEECCCCcccCCccccch----HH-HHHHh----------cC---CCCCCHHHHHHH
Confidence 8999999999999888664 999999999998876432110 11 10010 01 135678999999
Q ss_pred HHHHhhhcc
Q 042406 310 CLAGLDTAK 318 (424)
Q Consensus 310 ~~~~~~~~~ 318 (424)
+..++....
T Consensus 217 l~~~l~~~~ 225 (259)
T d2fr1a1 217 LQNALDRAE 225 (259)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCC
Confidence 998887754
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=4.1e-20 Score=168.61 Aligned_cols=229 Identities=13% Similarity=0.092 Sum_probs=162.1
Q ss_pred CCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 77 TRGLTVLVTGAAG--FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 77 ~~~~~vlItGg~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
++||++|||||+| +||+++++.|+++|++|++.+|+++.. ....+.. .......++..|+.+..++.+.++..
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLK-GRVEEFA---AQLGSDIVLQCDVAEDASIDTMFAELG 78 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTH-HHHHHHH---HHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHHHH---hhcCCcceeecccchHHHHHHHHHHhh
Confidence 6899999999999 899999999999999999999975432 2222211 22356788899999998888777654
Q ss_pred ----CccEEEEcccccCchhhccC---------hHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCC
Q 042406 154 ----AFTHVMHLAAQAGVRYAMQN---------PNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 ----~~d~vi~~Ag~~~~~~~~~~---------~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
++|++||+|+.......... ....+.+|+.+...+.+++.... .++.+|++||.+....
T Consensus 79 ~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~------- 151 (258)
T d1qsga_ 79 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA------- 151 (258)
T ss_dssp TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSB-------
T ss_pred hcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccC-------
Confidence 68999999988654322111 13466777788888887775532 2237888888654321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
......|+.||.+.+.+++.++.++ |+++++|+||.|..+..............+....++.
T Consensus 152 -----~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~---------- 216 (258)
T d1qsga_ 152 -----IPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIR---------- 216 (258)
T ss_dssp -----CTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTS----------
T ss_pred -----CCCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCCCC----------
Confidence 1345789999999999999999886 7999999999998875432222223333443332221
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
-+...+|+|.++..++...... .+|+++.+.+|-.
T Consensus 217 --R~~~peeia~~v~fL~s~~s~~----------itG~~i~vDGG~~ 251 (258)
T d1qsga_ 217 --RTVTIEDVGNSAAFLCSDLSAG----------ISGEVVHVDGGFS 251 (258)
T ss_dssp --SCCCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTGG
T ss_pred --CCcCHHHHHHHHHHHhCchhcC----------ccCceEEECcCHH
Confidence 1667899999999888655432 5568999988754
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3.5e-20 Score=170.06 Aligned_cols=207 Identities=18% Similarity=0.164 Sum_probs=150.3
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
+..++||++|||||+++||++++++|+++|++|++++|+.+..+....+... .....+.++.+|+.+.+.+...++.+
T Consensus 9 ~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~ 86 (269)
T d1xu9a_ 9 PEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLE--LGAASAHYIAGTMEDMTFAEQFVAQA 86 (269)
T ss_dssp GGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HTCSEEEEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhh--hhcccchhhhhhhhhHHHHHHHHHHH
Confidence 4458999999999999999999999999999999999987655544333221 23457889999999998887766654
Q ss_pred -----CccEEEEcccccCchhhcc----ChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRYAMQ----NPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGVNKKVPFSE 220 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~~~~----~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~~~~~~~~e 220 (424)
.+|+++||||........+ +.+..+++|+.++..+.+++ ++.+ .++|++||.+.+-.
T Consensus 87 ~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~--G~ii~isS~~~~~~-------- 156 (269)
T d1xu9a_ 87 GKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN--GSIVVVSSLAGKVA-------- 156 (269)
T ss_dssp HHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEGGGTSC--------
T ss_pred HHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC--CcceEeccchhcCC--------
Confidence 5799999999865432222 23468999999977665554 4333 38899998766432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCc
Q 042406 221 KDRTDQPASLYAATKKAGEAIAHAYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGAS 295 (424)
Q Consensus 221 ~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-----~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (424)
......|++||++.+.+++.++.++ +++++.|+||.|-.+ +......+ .
T Consensus 157 ----~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~----------~~~~~~~~------------~ 210 (269)
T d1xu9a_ 157 ----YPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE----------TAMKAVSG------------I 210 (269)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH----------HHHHHSCG------------G
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc----------HHHHhccC------------C
Confidence 1345799999999999999998663 699999999998654 22222111 1
Q ss_pred cccccccHHHHHHHHHHHhhhcc
Q 042406 296 VARDFTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 296 ~~~~~i~v~Dva~a~~~~~~~~~ 318 (424)
........+++|+.++.......
T Consensus 211 ~~~~~~~~e~~a~~i~~~~~~~~ 233 (269)
T d1xu9a_ 211 VHMQAAPKEECALEIIKGGALRQ 233 (269)
T ss_dssp GGGGCBCHHHHHHHHHHHHHTTC
T ss_pred ccccCCCHHHHHHHHHHHhhcCC
Confidence 22235567899999887765443
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.83 E-value=2.7e-20 Score=167.39 Aligned_cols=194 Identities=14% Similarity=0.079 Sum_probs=138.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc-----
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV----- 152 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~----- 152 (424)
+||+||||||+|+||+++++.|+++|++|++++++.... ......+.+|..+.+..+.+.+.
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE-------------ASASVIVKMTDSFTEQADQVTAEVGKLL 67 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT-------------SSEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc-------------ccccceeecccCcHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999865321 12334556677666655443332
Q ss_pred --cCccEEEEcccccCc-hhh----ccChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCCcccCCCCCCCCCCCCCC
Q 042406 153 --VAFTHVMHLAAQAGV-RYA----MQNPNSYVESNIAGFVNLLETCKSSD-PQPAIVWASSSSVYGVNKKVPFSEKDRT 224 (424)
Q Consensus 153 --~~~d~vi~~Ag~~~~-~~~----~~~~~~~~~~N~~g~~~ll~a~~~~~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~ 224 (424)
.++|+||||||.... ... .++.+..+++|+.++.++.+++.... ...+||++||.+.+...
T Consensus 68 ~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~----------- 136 (236)
T d1dhra_ 68 GDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT----------- 136 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC-----------
T ss_pred CCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCc-----------
Confidence 258999999996332 111 22345689999999888877765431 12389999997765421
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCccccc
Q 042406 225 DQPASLYAATKKAGEAIAHAYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARD 299 (424)
Q Consensus 225 ~~~~~~Y~~sK~~~e~~~~~~~~~~-----~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (424)
.....|++||++.+.+++.++.+. |+++++|.||.|..| +.+..... ...-.
T Consensus 137 -~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~----------~~~~~~~~------------~~~~~ 193 (236)
T d1dhra_ 137 -PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP----------MNRKSMPE------------ADFSS 193 (236)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH----------HHHHHSTT------------SCGGG
T ss_pred -cCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC----------cchhhCcc------------chhhc
Confidence 335789999999999999998653 799999999999875 22221111 11224
Q ss_pred cccHHHHHHHHHHHhhhcc
Q 042406 300 FTYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 300 ~i~v~Dva~a~~~~~~~~~ 318 (424)
++..+|+|+.+..++....
T Consensus 194 ~~~pe~va~~~~~l~s~~~ 212 (236)
T d1dhra_ 194 WTPLEFLVETFHDWITGNK 212 (236)
T ss_dssp SEEHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHhCCCc
Confidence 7788999999998886544
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.83 E-value=5.2e-19 Score=162.67 Aligned_cols=229 Identities=11% Similarity=0.076 Sum_probs=152.5
Q ss_pred CCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAG--FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.++||++|||||+| +||.+++++|+++|++|++++|+++ ......+... ......++.+|+++.+++.++++..
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~---~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQ---ELNSPYVYELDVSKEEHFKSLYNSV 77 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHH---HTTCCCEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHh---hCCceeEeeecccchhhHHHHHHHH
Confidence 37899999999877 8999999999999999999999743 2222222222 2456778999999999988887655
Q ss_pred -----CccEEEEcccccCchhhccC----hHH-HHH---HHHHHHHHHHHHHHhc-CCCCeEEEecCCcccCCCCCCCCC
Q 042406 154 -----AFTHVMHLAAQAGVRYAMQN----PNS-YVE---SNIAGFVNLLETCKSS-DPQPAIVWASSSSVYGVNKKVPFS 219 (424)
Q Consensus 154 -----~~d~vi~~Ag~~~~~~~~~~----~~~-~~~---~N~~g~~~ll~a~~~~-~~~~~~v~~SS~~vyg~~~~~~~~ 219 (424)
.+|++|||+|.........+ ... ... ++......+....... +....++.+|+.+..+..
T Consensus 78 ~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~------ 151 (274)
T d2pd4a1 78 KKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYM------ 151 (274)
T ss_dssp HHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC------
T ss_pred HHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccccc------
Confidence 68999999998654322221 122 222 2223344444444332 222246666665554421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcc
Q 042406 220 EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASV 296 (424)
Q Consensus 220 e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (424)
.....|+.+|.+.+.+++.++.++ |+++++|.||.+..+......-............+.
T Consensus 152 ------~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----------- 214 (274)
T d2pd4a1 152 ------AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPL----------- 214 (274)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT-----------
T ss_pred ------ccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhhhhc-----------
Confidence 334789999999999999988775 899999999999876443211112222222222221
Q ss_pred ccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 297 ARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 297 ~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
.-+...+|+|.+++.++...... .+|+++.+.+|-
T Consensus 215 -~r~~~pedIA~~v~fL~S~~s~~----------itG~~i~vDGG~ 249 (274)
T d2pd4a1 215 -RKNVSLEEVGNAGMYLLSSLSSG----------VSGEVHFVDAGY 249 (274)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTG
T ss_pred -cCCcCHHHHHHHHHHHhChhhCC----------CcCceEEECCCh
Confidence 12667899999999988765432 455899998875
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.82 E-value=2.9e-19 Score=165.24 Aligned_cols=227 Identities=10% Similarity=-0.040 Sum_probs=151.3
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeE-----------------EEEccCCCH
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVF-----------------VIDADINDK 143 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~-----------------~~~~Dl~d~ 143 (424)
.++||||+++||+++++.|+++|++|++.+|++....+........ ....... .+.+|+++.
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~ 82 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNA-RRPNSAITVQADLSNVATAPVSGADGSAPVTLF 82 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-HSTTCEEEEECCCSSSCBCCCC----CCCBCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHh-hcCCceEEEEeecccccccccccccccccCCCH
Confidence 5899999999999999999999999999988654333222222111 1122333 345668999
Q ss_pred HHHHHHhhcc-----CccEEEEcccccCchhhcc----Ch--------------HHHHHHHHHHHHHHHHHHHh------
Q 042406 144 SLLDKIFNVV-----AFTHVMHLAAQAGVRYAMQ----NP--------------NSYVESNIAGFVNLLETCKS------ 194 (424)
Q Consensus 144 ~~v~~~~~~~-----~~d~vi~~Ag~~~~~~~~~----~~--------------~~~~~~N~~g~~~ll~a~~~------ 194 (424)
++++++++.+ ++|+||||||........+ +. ...+.+|+.+...+.+++.+
T Consensus 83 ~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 162 (284)
T d1e7wa_ 83 TRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTP 162 (284)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhH
Confidence 9888887654 6899999999864321111 11 13678899998888776532
Q ss_pred ---cCCCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCC
Q 042406 195 ---SDPQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRP 268 (424)
Q Consensus 195 ---~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~ 268 (424)
.+...++|++||...... ......|+.+|.+.+.+++.++.++ |+++++|.||.+-....
T Consensus 163 ~~~~~~~~~ii~~~s~~~~~~------------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~~-- 228 (284)
T d1e7wa_ 163 AKHRGTNYSIINMVDAMTNQP------------LLGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDD-- 228 (284)
T ss_dssp GGGSCSCEEEEEECCTTTTSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGGG--
T ss_pred HHhcCCCCcccccccccccCC------------ccceeeeccccccchhhhHHHHHHhCCcccccccccccccccccc--
Confidence 122226777777554321 1345789999999999999999775 89999999997433221
Q ss_pred CCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCccc
Q 042406 269 DMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPVP 345 (424)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s 345 (424)
......+......++ .+ -+...+|+|.+++.++...... ..|+++.+.+|-.++
T Consensus 229 --~~~~~~~~~~~~~pl-------~~----R~~~peeiA~~v~fL~S~~s~~----------itG~~i~VDGG~sl~ 282 (284)
T d1e7wa_ 229 --MPPAVWEGHRSKVPL-------YQ----RDSSAAEVSDVVIFLCSSKAKY----------ITGTCVKVDGGYSLT 282 (284)
T ss_dssp --SCHHHHHHHHTTCTT-------TT----SCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGGC
T ss_pred --CCHHHHHHHHhcCCC-------CC----CCCCHHHHHHHHHHHhCchhcC----------ccCCeEEECcChhcc
Confidence 122344444443321 01 1567899999999888655432 455899999886554
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.82 E-value=9.1e-20 Score=163.89 Aligned_cols=193 Identities=15% Similarity=0.117 Sum_probs=135.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHh-------h
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIF-------N 151 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~-------~ 151 (424)
..+||||||+|+||++++++|+++|++|++++|+.+.. ......+.+|+.+.+...... +
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ-------------ADSNILVDGNKNWTEQEQSILEQTASSLQ 68 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT-------------SSEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc-------------ccccceeccccCchhHHHHHHHHHHHHhc
Confidence 35689999999999999999999999999999965421 112344556776655443332 2
Q ss_pred ccCccEEEEcccccCc-hhh----ccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCCcccCCCCCCCCCCCCCCC
Q 042406 152 VVAFTHVMHLAAQAGV-RYA----MQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWASSSSVYGVNKKVPFSEKDRTD 225 (424)
Q Consensus 152 ~~~~d~vi~~Ag~~~~-~~~----~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~SS~~vyg~~~~~~~~e~~~~~ 225 (424)
..++|+||||||.... ... .+..+..+++|+.++..+.+++..... ..++|++||.+.+.. .
T Consensus 69 ~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~------------~ 136 (235)
T d1ooea_ 69 GSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGP------------T 136 (235)
T ss_dssp TCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSC------------C
T ss_pred CCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCC------------c
Confidence 2368999999997432 111 122356799999998888777654321 138999999766542 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCCcccccc
Q 042406 226 QPASLYAATKKAGEAIAHAYNHIY-----GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGASVARDF 300 (424)
Q Consensus 226 ~~~~~Y~~sK~~~e~~~~~~~~~~-----~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (424)
.....|++||.+.+.+++.++.++ +++++.|+||.+-.+ +.+..... .....+
T Consensus 137 ~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~----------~~~~~~~~------------~~~~~~ 194 (235)
T d1ooea_ 137 PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP----------MNRKWMPN------------ADHSSW 194 (235)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH----------HHHHHSTT------------CCGGGC
T ss_pred ccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc----------chhhhCcC------------CccccC
Confidence 345889999999999999998663 689999999998654 22222211 122347
Q ss_pred ccHHHHHHHHHHHhhhcc
Q 042406 301 TYIDDIVKGCLAGLDTAK 318 (424)
Q Consensus 301 i~v~Dva~a~~~~~~~~~ 318 (424)
+..+|+++.++.++..+.
T Consensus 195 ~~~~~va~~~~~~l~~~~ 212 (235)
T d1ooea_ 195 TPLSFISEHLLKWTTETS 212 (235)
T ss_dssp BCHHHHHHHHHHHHHCGG
T ss_pred CCHHHHHHHHHHHhcCcc
Confidence 889999999886665543
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.80 E-value=1.3e-18 Score=161.80 Aligned_cols=236 Identities=11% Similarity=-0.006 Sum_probs=149.8
Q ss_pred CCCCCCCeEEEEcCCC--hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhh--------ccCCe-EEEEcc--C
Q 042406 74 PRSTRGLTVLVTGAAG--FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLL--------ERAGV-FVIDAD--I 140 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G--~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~--------~~~~v-~~~~~D--l 140 (424)
+.+++||++|||||+| +||+++++.|+++|++|++.+|+................ ..... ....+| +
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF 82 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence 4568999999999987 999999999999999999999854322111111111000 00011 222232 2
Q ss_pred ------------------CCHHHHHHHhhcc-----CccEEEEcccccCc---h---hhccChHHHHHHHHHHHHHHHHH
Q 042406 141 ------------------NDKSLLDKIFNVV-----AFTHVMHLAAQAGV---R---YAMQNPNSYVESNIAGFVNLLET 191 (424)
Q Consensus 141 ------------------~d~~~v~~~~~~~-----~~d~vi~~Ag~~~~---~---~~~~~~~~~~~~N~~g~~~ll~a 191 (424)
.+...++++++.+ ++|+||||||.... + ...++....+++|+.+..+++++
T Consensus 83 ~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~ 162 (297)
T d1d7oa_ 83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH 162 (297)
T ss_dssp CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhH
Confidence 2222233333322 67999999997431 1 12233467999999999999988
Q ss_pred HHhcCCC-CeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccCCCC
Q 042406 192 CKSSDPQ-PAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI----YGLSITGLRFFTVYGPWG 266 (424)
Q Consensus 192 ~~~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~i~~~~vrp~~v~G~~~ 266 (424)
+...... ..++.+++.+..... ......|+.+|.+.+.+++.++.+ +|+++++|+||.+..+..
T Consensus 163 ~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~ 231 (297)
T d1d7oa_ 163 FLPIMNPGGASISLTYIASERII-----------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAA 231 (297)
T ss_dssp HGGGEEEEEEEEEEECGGGTSCC-----------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCS
T ss_pred HHHHhhcCCcceeeeehhhcccc-----------cccccceecccccccccccccchhccccceEEecccccccccchhh
Confidence 7654322 245555554433211 133467999999998888776544 489999999999998866
Q ss_pred CCCCcHHHHHHHHHcCCceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCC
Q 042406 267 RPDMAYFFFTRDIIRGKRITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTT 342 (424)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 342 (424)
........+.+.....-|+. -+...+|+|.+++.++...... ..|+++.+.+|-
T Consensus 232 ~~~~~~~~~~~~~~~~~Plg------------R~~~peevA~~v~fL~S~~a~~----------itGq~i~vDGG~ 285 (297)
T d1d7oa_ 232 KAIGFIDTMIEYSYNNAPIQ------------KTLTADEVGNAAAFLVSPLASA----------ITGATIYVDNGL 285 (297)
T ss_dssp SCCSHHHHHHHHHHHHSSSC------------CCBCHHHHHHHHHHHTSGGGTT----------CCSCEEEESTTG
T ss_pred hhccCCHHHHHHHHhCCCCC------------CCCCHHHHHHHHHHHhCchhcC----------CcCceEEECcCH
Confidence 54333344555554443322 1567899999999888655432 455899998764
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.78 E-value=1.1e-17 Score=152.88 Aligned_cols=226 Identities=10% Similarity=0.020 Sum_probs=148.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC----HHHHHHHhhcc---
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND----KSLLDKIFNVV--- 153 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~v~~~~~~~--- 153 (424)
++|||||+++||++++++|+++|++|++.+|+.+...+....... ......+.++..|+.+ .+.+.++++..
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELN-AARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA 81 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH-HHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHH-hhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999986644332222221 2234566777777654 34455544432
Q ss_pred --CccEEEEcccccCchhhcc---------------ChHHHHHHHHHHHHHHHHHHHhcC--------CCCeEEEecCCc
Q 042406 154 --AFTHVMHLAAQAGVRYAMQ---------------NPNSYVESNIAGFVNLLETCKSSD--------PQPAIVWASSSS 208 (424)
Q Consensus 154 --~~d~vi~~Ag~~~~~~~~~---------------~~~~~~~~N~~g~~~ll~a~~~~~--------~~~~~v~~SS~~ 208 (424)
++|++|||||+........ .....+..|..+............ ....++.+|+..
T Consensus 82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (266)
T d1mxha_ 82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAM 161 (266)
T ss_dssp HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGG
T ss_pred hCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhcc
Confidence 6899999999864321110 112355666666555544443321 112566666655
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCce
Q 042406 209 VYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRI 285 (424)
Q Consensus 209 vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~ 285 (424)
.... ......|+.||.+.+.+++.++.++ |++++.|.||.+..+.... ....+.+...-++
T Consensus 162 ~~~~------------~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~----~~~~~~~~~~~pl 225 (266)
T d1mxha_ 162 TDLP------------LPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP----QETQEEYRRKVPL 225 (266)
T ss_dssp GGSC------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC----HHHHHHHHTTCTT
T ss_pred cccc------------CcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC----HHHHHHHHhcCCC
Confidence 4332 1346889999999999999998774 8999999999998764432 2344444444332
Q ss_pred eEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 286 TVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 286 ~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
. +-+...+|+|.+++.++...... .+|+++.+.+|-.+
T Consensus 226 ~-----------r~~~~peeva~~v~fL~s~~s~~----------itG~~i~vDGG~~l 263 (266)
T d1mxha_ 226 G-----------QSEASAAQIADAIAFLVSKDAGY----------ITGTTLKVDGGLIL 263 (266)
T ss_dssp T-----------SCCBCHHHHHHHHHHHHSGGGTT----------CCSCEEEESTTGGG
T ss_pred C-----------CCCCCHHHHHHHHHHHhCchhCC----------ccCCeEEECccHhh
Confidence 1 11456899999999988765432 45589999887543
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.78 E-value=2.7e-18 Score=157.26 Aligned_cols=231 Identities=9% Similarity=-0.012 Sum_probs=152.1
Q ss_pred CCCCCeEEEEcCC--ChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAA--GFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.++||++|||||+ .+||++++++|+++|++|++.+|+..+..+. .. + ....+...+++|+++.+++.++++.+
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~---~~-~-~~~~~~~~~~~dv~~~~~~~~~~~~v 77 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQR---IT-D-RLPAKAPLLELDVQNEEHLASLAGRV 77 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHH---HH-T-TSSSCCCEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHH---HH-H-HcCCceeeEeeecccccccccccchh
Confidence 4789999999954 5799999999999999999999976432221 11 1 23456788999999998777665544
Q ss_pred --------CccEEEEcccccCchhh-----cc----ChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCCCCCC
Q 042406 154 --------AFTHVMHLAAQAGVRYA-----MQ----NPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGVNKKV 216 (424)
Q Consensus 154 --------~~d~vi~~Ag~~~~~~~-----~~----~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~~~~~ 216 (424)
.+|+++||||....... .+ .....+.+|..........+........+++++|.......
T Consensus 78 ~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~--- 154 (268)
T d2h7ma1 78 TEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAM--- 154 (268)
T ss_dssp HHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCC---
T ss_pred hhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccccC---
Confidence 47999999997543211 11 11346677777777777766654333345555554433221
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCC------CCCC----cHHHHHHHHHcCC
Q 042406 217 PFSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWG------RPDM----AYFFFTRDIIRGK 283 (424)
Q Consensus 217 ~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~------~~~~----~~~~~~~~~~~~~ 283 (424)
+....|+.+|.+.+.+++.++.++ |+++++|.||.|-.+.. .... ....+.......-
T Consensus 155 ---------p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (268)
T d2h7ma1 155 ---------PAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRA 225 (268)
T ss_dssp ---------TTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHC
T ss_pred ---------cccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcC
Confidence 334789999999999999998775 79999999999875411 0000 0111222222222
Q ss_pred ceeEEecCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCcc
Q 042406 284 RITVYEAPDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTPV 344 (424)
Q Consensus 284 ~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 344 (424)
|+. +-+...+|+|.+++.++...... ..|+++.|.+|-..
T Consensus 226 pl~-----------rr~~~p~dva~~v~fL~Sd~a~~----------iTG~~i~vDGG~~~ 265 (268)
T d2h7ma1 226 PIG-----------WNMKDATPVAKTVCALLSDWLPA----------TTGDIIYADGGAHT 265 (268)
T ss_dssp TTC-----------CCTTCCHHHHHHHHHHHSSSCTT----------CCSEEEEESTTGGG
T ss_pred CCC-----------CCCCCHHHHHHHHHHHhCchhcC----------ccCCEEEECcCccc
Confidence 211 12556799999999888644332 45589999887644
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=4e-18 Score=153.47 Aligned_cols=213 Identities=17% Similarity=0.135 Sum_probs=148.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc----C
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----A 154 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----~ 154 (424)
.|++|||||+++||++++++|+++|++|++.+|+.+ ..+....++|+++......+.... .
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~---------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 65 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE---------------GEDLIYVEGDVTREEDVRRAVARAQEEAP 65 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC---------------SSSSEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc---------------cccceEeeccccchhhhHHHHHhhhcccc
Confidence 378999999999999999999999999999999653 235678899999987766665433 4
Q ss_pred ccEEEEcccccCchh--------hccChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCCcccCCCCCCC
Q 042406 155 FTHVMHLAAQAGVRY--------AMQNPNSYVESNIAGFVNLLETCKSS---------DPQPAIVWASSSSVYGVNKKVP 217 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~--------~~~~~~~~~~~N~~g~~~ll~a~~~~---------~~~~~~v~~SS~~vyg~~~~~~ 217 (424)
.+.++++++...... ..+..+..+++|+.+..++...+... ....+||++||...+...
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~---- 141 (241)
T d1uaya_ 66 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ---- 141 (241)
T ss_dssp EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC----
T ss_pred ccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCC----
Confidence 566777766533211 11223568899999987776655322 112389999997665321
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEecCCCC
Q 042406 218 FSEKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYEAPDGA 294 (424)
Q Consensus 218 ~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (424)
.....|+++|.+.+.+++.++.++ ||++++|.||.|..+..... .......+....++. +
T Consensus 142 --------~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~--~~~~~~~~~~~~~~~-------~ 204 (241)
T d1uaya_ 142 --------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL--PEKAKASLAAQVPFP-------P 204 (241)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS--CHHHHHHHHTTCCSS-------C
T ss_pred --------CCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchh--hhhHHHHHHhcCCCC-------C
Confidence 345789999999999999999875 89999999999977532211 112233333332210 1
Q ss_pred ccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCCCc
Q 042406 295 SVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNTTP 343 (424)
Q Consensus 295 ~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 343 (424)
-+...+|+|.+++.++... . ..|+++.|.+|-.
T Consensus 205 ----R~g~pedvA~~v~fL~s~~-~-----------iTG~~i~VDGG~~ 237 (241)
T d1uaya_ 205 ----RLGRPEEYAALVLHILENP-M-----------LNGEVVRLDGALR 237 (241)
T ss_dssp ----SCCCHHHHHHHHHHHHHCT-T-----------CCSCEEEESTTCC
T ss_pred ----CCcCHHHHHHHHHHHHhCC-C-----------CCCCEEEECCccc
Confidence 1556899999999888632 1 4458999988753
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.75 E-value=1.1e-17 Score=157.61 Aligned_cols=175 Identities=11% Similarity=0.043 Sum_probs=118.1
Q ss_pred CCCeEEEEc--CCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhh----hh-----ccCCeEEEEc--------
Q 042406 78 RGLTVLVTG--AAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKG----LL-----ERAGVFVIDA-------- 138 (424)
Q Consensus 78 ~~~~vlItG--g~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~-----~~~~v~~~~~-------- 138 (424)
++|.+|||| ++++||+.+++.|+++|++|++.++............... .. .........+
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 468999999 5579999999999999999999988654322211111100 00 0011223333
Q ss_pred ------------cCCCHHHHHHHhhcc-----CccEEEEcccccCc------hhhccChHHHHHHHHHHHHHHHHHHHhc
Q 042406 139 ------------DINDKSLLDKIFNVV-----AFTHVMHLAAQAGV------RYAMQNPNSYVESNIAGFVNLLETCKSS 195 (424)
Q Consensus 139 ------------Dl~d~~~v~~~~~~~-----~~d~vi~~Ag~~~~------~~~~~~~~~~~~~N~~g~~~ll~a~~~~ 195 (424)
|+.+.++++++++.+ ++|++|||||.... ....++.+..+++|+.++..+++++...
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 555655566555543 68999999997542 1123345678999999998888887664
Q ss_pred C-CCCeEEEecCCcccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEEeccccC
Q 042406 196 D-PQPAIVWASSSSVYGVNKKVPFSEKDRTDQPASLYAATKKAGEAIAHAYNHI----YGLSITGLRFFTVYG 263 (424)
Q Consensus 196 ~-~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~~i~~~~vrp~~v~G 263 (424)
. ...++|.+||.+..... + .....|+.+|.+.+.+++.++.+ +|||+++|.||.|-.
T Consensus 161 m~~~GsIv~iss~~~~~~~----------p-~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T 222 (329)
T d1uh5a_ 161 MKPQSSIISLTYHASQKVV----------P-GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKS 222 (329)
T ss_dssp EEEEEEEEEEECGGGTSCC----------T-TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_pred cccccccccceeehhcccc----------c-ccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccc
Confidence 2 12378888886654321 1 22467999999999999998754 489999999998854
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.68 E-value=5.9e-16 Score=140.47 Aligned_cols=218 Identities=14% Similarity=0.102 Sum_probs=132.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc-----
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV----- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~----- 153 (424)
+|+||||||+++||++++++|+++|++|++++|+..+ ..+|+.+.+.......+.
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~--------------------~~~d~~~~~~~~~~~~~~~~~~~ 60 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE--------------------VIADLSTAEGRKQAIADVLAKCS 60 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS--------------------EECCTTSHHHHHHHHHHHHTTCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH--------------------HHHHhcCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999985431 245788776655543322
Q ss_pred -CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCCcccCC-CCCCCCC--------
Q 042406 154 -AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETC----KSSDPQPAIVWASSSSVYGV-NKKVPFS-------- 219 (424)
Q Consensus 154 -~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~----~~~~~~~~~v~~SS~~vyg~-~~~~~~~-------- 219 (424)
.+|+++||||.... .+.......+|..+...+.+.. .+.... ....+++...... ....+..
T Consensus 61 ~~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 136 (257)
T d1fjha_ 61 KGMDGLVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQP-AAVVISSVASAHLAFDKNPLALALEAGEE 136 (257)
T ss_dssp TCCSEEEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSC-EEEEECCGGGGSSCGGGCTTHHHHHHTCH
T ss_pred CCCcEEEEcCCCCCc---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-cceeeeeccccchhhhhhhhhhhccCCcE
Confidence 47999999987542 3445667888888876665543 333333 5555555332211 0000000
Q ss_pred -------CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEEeccccCCCCCCCCcHHHHHHHHHcCCceeEEe
Q 042406 220 -------EKDRTDQPASLYAATKKAGEAIAHAYNHIY---GLSITGLRFFTVYGPWGRPDMAYFFFTRDIIRGKRITVYE 289 (424)
Q Consensus 220 -------e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~i~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (424)
.......+...|+.||.+.+.+++.++.++ ||++++|.||.|-.|.......-..+.+.+.+..
T Consensus 137 ~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~------ 210 (257)
T d1fjha_ 137 AKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFV------ 210 (257)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------CC------
T ss_pred EEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHHHHHHHhcC------
Confidence 000000122469999999999999998765 8999999999998764321100001111111110
Q ss_pred cCCCCccccccccHHHHHHHHHHHhhhccccCCCCCCCCCCCCcceEEcCCC
Q 042406 290 APDGASVARDFTYIDDIVKGCLAGLDTAKKSTGSGGKKKGPAEFRIFNLGNT 341 (424)
Q Consensus 290 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 341 (424)
....-+...+|+|.+++.++...... ..|+++.+.+|
T Consensus 211 -----~PlgR~g~p~eva~~v~fL~S~~s~~----------itG~~i~vDGG 247 (257)
T d1fjha_ 211 -----PPMGRRAEPSEMASVIAFLMSPAASY----------VHGAQIVIDGG 247 (257)
T ss_dssp -----CSTTSCCCTHHHHHHHHHHTSGGGTT----------CCSCEEEESTT
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCchhCC----------ccCceEEeCCC
Confidence 01112567899999999988765432 45589999876
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.49 E-value=4.8e-16 Score=134.51 Aligned_cols=86 Identities=20% Similarity=0.161 Sum_probs=72.1
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
..++++|+|+||||+|+||+.+++.|+++|++|++++|+.++.......... ..++....+|++|.+++++++.++
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~i 93 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNK----RFKVNVTAAETADDASRAEAVKGA 93 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH----HHTCCCEEEECCSHHHHHHHTTTC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHh----ccchhhhhhhcccHHHHHHHhcCc
Confidence 3468999999999999999999999999999999999987665544433332 245667889999999999999977
Q ss_pred CccEEEEccccc
Q 042406 154 AFTHVMHLAAQA 165 (424)
Q Consensus 154 ~~d~vi~~Ag~~ 165 (424)
|+||||||..
T Consensus 94 --Dilin~Ag~g 103 (191)
T d1luaa1 94 --HFVFTAGAIG 103 (191)
T ss_dssp --SEEEECCCTT
T ss_pred --CeeeecCccc
Confidence 9999999974
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.46 E-value=8.7e-07 Score=71.42 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.+.|+|.|.|+ |.+|..++..|+.+| .+|+++|++++........................|. + .+++.
T Consensus 3 ~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~---~----~~~~a- 73 (146)
T d1ez4a1 3 PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY---S----DCKDA- 73 (146)
T ss_dssp TTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG---G----GGTTC-
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH---H----Hhccc-
Confidence 45679999996 999999999999988 5899999976543322221211111223344555554 2 34555
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|+||.+||.... ...+....+..|..-...+++...+.+.+..++.+|
T Consensus 74 -divvitag~~~~--~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 74 -DLVVITAGAPQK--PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp -SEEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred -cEEEEecccccC--CCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 999999986432 223446778899999999999999998775555555
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.31 E-value=3.1e-06 Score=67.84 Aligned_cols=114 Identities=18% Similarity=0.122 Sum_probs=78.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
+|.|+||+|.+|..++..|+.+|. +++++|.++.. . ...+............ ........+.+++. |+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~--~----~a~Dl~~~~~~~~~~~-~~~~~~~~~~~~~a--Div 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--G----VAADLSHIETRATVKG-YLGPEQLPDCLKGC--DVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHH--H----HHHHHTTSSSSCEEEE-EESGGGHHHHHTTC--SEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccc--h----hhHHHhhhhhhcCCCe-EEcCCChHHHhCCC--CEE
Confidence 689999999999999999999984 78999975421 1 1111111111111111 22345566777877 999
Q ss_pred EEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 159 MHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 159 i~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|.+||.... ...+....+..|..-.+.+++.+++++....++.+|
T Consensus 73 Vitag~~~~--~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 73 VIPAGVPRK--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp EECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EECCCcCCC--CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 999997332 233557789999999999999999998775666655
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.23 E-value=5.2e-06 Score=65.60 Aligned_cols=72 Identities=17% Similarity=0.330 Sum_probs=56.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d~v 158 (424)
|+|+|+|+ |.+|+.+++.|.++|++|++++.+++.... .. ...++.++.+|.+|++.++++ ++.. |.+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~----~~----~~~~~~vi~Gd~~~~~~l~~~~i~~a--~~v 69 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKK----AS----AEIDALVINGDCTKIKTLEDAGIEDA--DMY 69 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HH----HHCSSEEEESCTTSHHHHHHTTTTTC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhh----hh----hhhhhhhccCcccchhhhhhcChhhh--hhh
Confidence 78999998 999999999999999999999986543221 11 113678999999999999887 4544 888
Q ss_pred EEcc
Q 042406 159 MHLA 162 (424)
Q Consensus 159 i~~A 162 (424)
+-+.
T Consensus 70 v~~t 73 (132)
T d1lssa_ 70 IAVT 73 (132)
T ss_dssp EECC
T ss_pred cccC
Confidence 8653
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.20 E-value=1e-05 Score=64.72 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=76.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchh-hhHHHHHhh--hhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYE-TSLKKARKG--LLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~-~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
|+|.|+||+|.+|..++..|+.+| .++.++|++.+... +........ .....++.....--.|. +.+++.
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~a- 75 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL----RIIDES- 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGGTTC-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH----HHhccc-
Confidence 689999999999999999999998 48999998643211 001111111 11122333332222233 245555
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|+||-+||... ....+..+.+..|..-...+++...+.+.. .++.+|
T Consensus 76 -DvVVitAG~~~--~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~-~iivVt 122 (145)
T d1hyea1 76 -DVVIITSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEICDT-KIFVIT 122 (145)
T ss_dssp -SEEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCCC-EEEECS
T ss_pred -eEEEEeccccc--CCCCChhhhhhhhHHHHHHHHHHHhccCCC-eEEEEc
Confidence 99999999733 223356788999999999999999888754 555554
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.13 E-value=1.2e-05 Score=64.64 Aligned_cols=118 Identities=23% Similarity=0.233 Sum_probs=81.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
+..+++|.|+|+ |.+|..++..|+.+|. +++++|++++............ ......+.+...|. +.+++
T Consensus 3 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l~d 74 (148)
T d1ldna1 3 NNGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDCRD 74 (148)
T ss_dssp TTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGTTT
T ss_pred CCCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------HHhcc
Confidence 456788999997 9999999999999884 7999998765433322222111 11223444544443 23555
Q ss_pred cCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 153 VAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 153 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
. |+||.+||.... ......+.+..|..-...+++...+++....++.+|
T Consensus 75 a--Dvvvitag~~~~--~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 75 A--DLVVICAGANQK--PGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp C--SEEEECCSCCCC--TTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred c--eeEEEecccccc--cCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 5 999999997432 233446778889999999999999988775666665
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=98.09 E-value=2.1e-05 Score=62.73 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=73.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++|.|.|+ |.+|..++..|+.+|. +++++|++.+.......................+ ++ +.+++. |+
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~----~~~~~a--di 71 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG---DY----SDVKDC--DV 71 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----CG----GGGTTC--SE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC---cH----HHhCCC--ce
Confidence 46889997 9999999999999984 8999999876554333222221111223333332 22 235555 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|+-+||... ....+....+..|..-...+++.+.+.+.+..++.+|
T Consensus 72 vvitag~~~--~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 72 IVVTAGANR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp EEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred EEEeccccc--CcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 999999643 2234556789999999999999999988765666655
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=98.09 E-value=2.4e-05 Score=62.27 Aligned_cols=114 Identities=16% Similarity=0.053 Sum_probs=77.1
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCc--hhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNY--YETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+|.|+||+|.+|..++..|+.+|. ++.++|..... .......................|. ++ +++. |
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~---~~----~~~a--D 72 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY---ED----TAGS--D 72 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG---GG----GTTC--S
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH---HH----hhhc--C
Confidence 689999999999999999999984 78888864321 1111111111111223444444443 32 4555 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
+||-+||... ....+..+.+..|..-.+.+++..++.+.+..++.+|
T Consensus 73 iVvitaG~~~--~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 73 VVVITAGIPR--QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp EEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred EEEEeccccc--ccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 9999999643 2234567899999999999999999998775666665
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=2.2e-05 Score=62.46 Aligned_cols=114 Identities=14% Similarity=0.116 Sum_probs=77.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
|+|.|.|+ |.+|..++..|+.++ .++.++|++++........................| .+ .+++. |+
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~~----~~~~a--di 70 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---YA----DLKGS--DV 70 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---GG----GGTTC--SE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---HH----HhcCC--CE
Confidence 68999997 999999999999887 489999987654433222222211122344444433 22 35555 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
||-+||.... ......+.+..|..-...+++...+.+....++.+|
T Consensus 71 vvitag~~~~--~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 71 VIVAAGVPQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp EEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEEecccccC--CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 9999997432 233456788889999999999999988775565555
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=2.7e-05 Score=62.26 Aligned_cols=115 Identities=17% Similarity=0.062 Sum_probs=75.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHh-CC--CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKK-RG--DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~-~g--~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+|.|+|++|.+|..++..|+. .+ .++.++|..+. .... ...... .....-.....+-.+. +.+++. |
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-~~g~-a~Dl~h-~~~~~~~~~~~~~~~~----~~~~~a--D 71 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGV-AVDLSH-IPTAVKIKGFSGEDAT----PALEGA--D 71 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-HHHH-HHHHHT-SCSSCEEEEECSSCCH----HHHTTC--S
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-chhH-HHHHHC-CccccCCcEEEcCCCc----cccCCC--C
Confidence 7899999999999999988764 34 68999987432 2111 111111 1111111122233333 346666 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
+||.+||.... ...+..+.+..|..-.+.+.+.+.+.+....+|.+|
T Consensus 72 vvvitaG~~~k--~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 72 VVLISAGVRRK--PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp EEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEECCCccCC--CCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 99999997432 234556789999999999999999988775677666
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.05 E-value=2.3e-05 Score=62.53 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=78.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+|.|+|+ |.+|..++..|+..| .+++++|++++............ ........+... .|.+ .+++. |
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~----~~~da--d 71 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYA----DTANS--D 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGG----GGTTC--S
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCHH----HhcCC--e
Confidence 68999996 999999999999998 58999999887554332222111 112223333322 2332 35555 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
+|+-+||.... ...+....+..|..-...+++...+.+....++.+|
T Consensus 72 vvvitag~~~~--~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 72 IVIITAGLPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp EEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred EEEEEEecCCC--CCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence 99999997432 223456788899999999999999888765566555
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.95 E-value=7.6e-05 Score=60.44 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=79.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
..+.++|.|.|+ |.+|..++..|+.+|. +++++|++.+............ ............| .+ .+++
T Consensus 17 ~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d---~~----~~~~ 88 (160)
T d1i0za1 17 TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD---YS----VTAN 88 (160)
T ss_dssp CCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS---GG----GGTT
T ss_pred cCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc---hh----hccc
Confidence 345678999996 9999999999999995 8999998755443322222211 1112222222233 32 2555
Q ss_pred cCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 153 VAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 153 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
. |+||..||.... ...+....+..|..-.+.+++..++.+.+..++.+|
T Consensus 89 a--diVVitAg~~~~--~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 89 S--KIVVVTAGVRQQ--EGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp C--SEEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred c--cEEEEecCCccc--cCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 5 999999997432 234456788899999999999999988776777776
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.93 E-value=5e-05 Score=61.37 Aligned_cols=121 Identities=16% Similarity=0.094 Sum_probs=79.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.+.++|.|.|+ |.+|..++..|+..+ .+++++|.+++............. .......... -.+ .++.+++.
T Consensus 5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~--~~~---~~~~~~~a- 77 (154)
T d1pzga1 5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA--EYS---YEAALTGA- 77 (154)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE--ECS---HHHHHTTC-
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEec--cCc---hhhhhcCC-
Confidence 45678999997 999999999888888 489999988765444322222111 1111111111 111 23556666
Q ss_pred ccEEEEcccccCchh---hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 155 FTHVMHLAAQAGVRY---AMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~---~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|+|+-+||.....- ...+....+..|..-...+++.+.+.+....|+.+|
T Consensus 78 -diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 78 -DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp -SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred -CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99999998754221 112446688899999999999999998775555555
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.92 E-value=3.1e-05 Score=63.99 Aligned_cols=75 Identities=23% Similarity=0.150 Sum_probs=56.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+.|+|+|.|| |.+|+.+++.|.++|++|++++|+.+..... .. ..........+..+.....+.+... |.
T Consensus 1 ~~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l-----~~--~~~~~~~~~~~~~~~~~~~~~i~~~--~~ 70 (182)
T d1e5qa1 1 ATKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKL-----SA--GVQHSTPISLDVNDDAALDAEVAKH--DL 70 (182)
T ss_dssp CCCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHH-----HT--TCTTEEEEECCTTCHHHHHHHHTTS--SE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHH-----Hh--cccccccccccccchhhhHhhhhcc--ce
Confidence 3689999987 9999999999999999999999965432221 11 2234556667777888888888766 88
Q ss_pred EEEcc
Q 042406 158 VMHLA 162 (424)
Q Consensus 158 vi~~A 162 (424)
++.+.
T Consensus 71 ~i~~~ 75 (182)
T d1e5qa1 71 VISLI 75 (182)
T ss_dssp EEECS
T ss_pred eEeec
Confidence 88654
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.89 E-value=5.5e-06 Score=69.80 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=36.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHH
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLK 121 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~ 121 (424)
|||.|+||+|.+|+.|++.|++.|++|++++|++++.+....
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~ 42 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAA 42 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 789999999999999999999999999999997765544433
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.87 E-value=2.2e-05 Score=61.96 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=55.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHH-hhccCccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKI-FNVVAFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~-~~~~~~d~v 158 (424)
|+++|.|+ |-+|+.+++.|.++|++|++++.+.+. .+........++.+|.++++.+.++ +++. |.|
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~---------~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a--~~v 68 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEK---------VNAYASYATHAVIANATEENELLSLGIRNF--EYV 68 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHH---------HHHTTTTCSEEEECCTTCTTHHHHHTGGGC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHH---------HHHHHHhCCcceeeecccchhhhccCCccc--cEE
Confidence 56899987 999999999999999999999985432 1222345667888999999999887 5655 888
Q ss_pred EEcc
Q 042406 159 MHLA 162 (424)
Q Consensus 159 i~~A 162 (424)
|-+.
T Consensus 69 i~~~ 72 (134)
T d2hmva1 69 IVAI 72 (134)
T ss_dssp EECC
T ss_pred EEEc
Confidence 7654
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.85 E-value=0.00016 Score=57.42 Aligned_cols=115 Identities=18% Similarity=0.165 Sum_probs=75.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.+|.|+|+ |.+|..++..|+.+|. +++++|++++....................+... .+.+ .+++. |+
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~--~~~~----~~~da--Dv 72 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDPE----ICRDA--DM 72 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCGG----GGTTC--SE
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecC--CCHH----HhhCC--cE
Confidence 36899997 9999999999999984 8999998664433222112111111122222222 2222 34555 99
Q ss_pred EEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 158 VMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 158 vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
||.+||.... .-.+..+.+..|..-...+++.+.+.+....++.+|
T Consensus 73 VVitaG~~~~--~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 73 VVITAGPRQK--PGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp EEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEEecccccC--CCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 9999997432 234456789999999999999999988765666555
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=5.7e-05 Score=57.26 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=58.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
...+.+|.|.|| |.+|+.++....+.|++|+++|.+.+.... .-.-.++.+|..|.+.+.++....++
T Consensus 8 ~~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~-----------~va~~~i~~~~~d~~~l~~~~~~~~~ 75 (111)
T d1kjqa2 8 RPAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAM-----------HVAHRSHVINMLDGDALRRVVELEKP 75 (111)
T ss_dssp STTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGG-----------GGSSEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchh-----------hcCCeEEECCCCCHHHHHHHHHhhCC
Confidence 345668999996 999999999999999999999986542211 11336788999999999999877677
Q ss_pred cEEEE
Q 042406 156 THVMH 160 (424)
Q Consensus 156 d~vi~ 160 (424)
|+|-.
T Consensus 76 DviT~ 80 (111)
T d1kjqa2 76 HYIVP 80 (111)
T ss_dssp SEEEE
T ss_pred ceEEE
Confidence 98864
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.78 E-value=0.00017 Score=57.27 Aligned_cols=114 Identities=14% Similarity=0.079 Sum_probs=75.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhhh-ccCCeEEE-EccCCCHHHHHHHhhccCc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGLL-ERAGVFVI-DADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~v~~~-~~Dl~d~~~v~~~~~~~~~ 155 (424)
|+|.|.|+ |.+|..++..|+.+| .++.++|++++.............. ........ ..|. + .+++.
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~---~----~~~~a-- 70 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY---S----LLKGS-- 70 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG---G----GGTTC--
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH---H----Hhccc--
Confidence 78999996 999999999999888 4799999866543322221211111 11122222 2232 2 45555
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|+||-.||.... ...+..+.+..|..-...+.+.+++.+....++.+|
T Consensus 71 diVvitag~~~~--~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 71 EIIVVTAGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp SEEEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred cEEEEeccccCC--CCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 999999986432 233456788899999999999999988765555555
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.77 E-value=0.00014 Score=58.74 Aligned_cols=118 Identities=14% Similarity=0.032 Sum_probs=73.0
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC----e---EEEEeCCCCchhhhHHHHHh--hhhccCCeEEEEccCCCHHHHHH
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD----G---VLGLDNFNNYYETSLKKARK--GLLERAGVFVIDADINDKSLLDK 148 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~----~---V~~~~r~~~~~~~~~~~~~~--~~~~~~~v~~~~~Dl~d~~~v~~ 148 (424)
+.++|.|+||+|++|..++..|+..+. . ..+++-.. .......... ..........+...-.+ .+
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 76 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ--AMKALEGVVMELEDCAFPLLAGLEATDDP----KV 76 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG--GHHHHHHHHHHHHTTTCTTEEEEEEESCH----HH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcccc--chhhHcCchhhhhccccccccccccCCch----hh
Confidence 346899999999999999999998753 1 22222211 1111111111 11222334444444333 45
Q ss_pred HhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEec
Q 042406 149 IFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWAS 205 (424)
Q Consensus 149 ~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~S 205 (424)
.+++. |+||-+||... ....+..+.+..|..-...+.+...+... ...++.+|
T Consensus 77 ~~~~a--dvViitaG~~~--~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 77 AFKDA--DYALLVGAAPR--KAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp HTTTC--SEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred hcccc--cEEEeecCcCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 67766 99999999743 22345678899999999999999888543 32455555
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.74 E-value=0.0002 Score=58.93 Aligned_cols=117 Identities=12% Similarity=0.070 Sum_probs=73.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC---C----eEEEEeCCCCchhhhHHHHHhh--hhccCCeEEEEccCCCHHHHHHH
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRG---D----GVLGLDNFNNYYETSLKKARKG--LLERAGVFVIDADINDKSLLDKI 149 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g---~----~V~~~~r~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~v~~~ 149 (424)
..+|.||||+|.||..++-.|+..+ . .+.+++.... .........+ ......+..+..- + ...+.
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~--~~~l~g~~mdl~d~a~~~~~~~~~~-~---~~~~~ 97 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERS--FQALEGVAMELEDSLYPLLREVSIG-I---DPYEV 97 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHHHTTTCTTEEEEEEE-S---CHHHH
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccc--cchhcchhhhhcccccccccCcccc-c---cchhh
Confidence 3479999999999999999998753 1 4455554322 1211211111 1122233322221 1 24567
Q ss_pred hhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEec
Q 042406 150 FNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDP-QPAIVWAS 205 (424)
Q Consensus 150 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~-~~~~v~~S 205 (424)
+++. |+||-.||... .......+.+..|..-.+.+.+++.+... ..+++.+|
T Consensus 98 ~~~a--DvVvi~ag~~r--kpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 98 FEDV--DWALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp TTTC--SEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCC--ceEEEeeccCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 7777 99999998743 33445678999999999999999988643 32455555
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.73 E-value=4.8e-05 Score=61.61 Aligned_cols=117 Identities=15% Similarity=0.144 Sum_probs=77.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
++..+|.|+|+ |.+|..++..|+.+|. +++++|++.+............. ...........|. + .+++.
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~---~----~~~~a 88 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY---N----VSANS 88 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG---G----GGTTE
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch---h----hhccc
Confidence 44568999996 9999999999999984 89999986544332222221111 1122222333333 2 34555
Q ss_pred CccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 154 AFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|+||..||..... ..+..+.+..|..-...+++...+.+....++.+|
T Consensus 89 --divvitag~~~~~--~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 89 --KLVIITAGARMVS--GQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp --EEEEECCSCCCCT--TTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred --cEEEEecccccCC--CCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 9999999874422 23445678889999999999888888776677666
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.70 E-value=0.00014 Score=60.45 Aligned_cols=106 Identities=23% Similarity=0.160 Sum_probs=66.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEE-EccCCCHHHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVI-DADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~v~~~~~~~~~d 156 (424)
+|.+|||+||+|.+|...++.....|++|+++++++++.+. .+ .. ..-+++ .-|-...+.+.+.....++|
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~----~~--~~--Ga~~vi~~~~~~~~~~~~~~~~~~Gvd 100 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY----LK--QI--GFDAAFNYKTVNSLEEALKKASPDGYD 100 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH----HH--HT--TCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHH----HH--hh--hhhhhcccccccHHHHHHHHhhcCCCc
Confidence 57899999999999999999999999999999985432111 11 11 111222 22333344555555555789
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
+||++.|-.. ....++.++..+ +++.+...+.|+.
T Consensus 101 ~v~D~vG~~~------------------~~~~~~~l~~~G---~~v~~G~~~~~~~ 135 (182)
T d1v3va2 101 CYFDNVGGEF------------------LNTVLSQMKDFG---KIAICGAISVYNR 135 (182)
T ss_dssp EEEESSCHHH------------------HHHHGGGEEEEE---EEEECCCGGGTTC
T ss_pred eeEEecCchh------------------hhhhhhhccCCC---eEEeecceeeccc
Confidence 9999987310 122334444433 7887777666654
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.68 E-value=0.00016 Score=57.67 Aligned_cols=116 Identities=14% Similarity=0.068 Sum_probs=74.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCCchhhhHHHHHhhh-hccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNNYYETSLKKARKGL-LERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
|+|.|+|+ |.+|..++-.|+.+| .+++++|++.+............. ...........| .+ .+++. |
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d---~~----~l~~a--d 71 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---WA----ALADA--D 71 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---GG----GGTTC--S
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC---HH----Hhccc--c
Confidence 68999996 999999999999987 489999987654433222222111 112233444433 32 34555 9
Q ss_pred EEEEcccccCchh--hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 157 HVMHLAAQAGVRY--AMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 157 ~vi~~Ag~~~~~~--~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
+||-+||...... ...+....+..|..-...+.+..++.+....+|.+|
T Consensus 72 iVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 72 VVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp EEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred EEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 9999998643110 011223467889999999999999988775666555
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=0.00018 Score=59.73 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=64.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.+++|+|+|.|+ |+.|+.++..|++.|. .++++.|+.+..+....... .............|+.+.+.+.+.+...
T Consensus 15 ~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 91 (182)
T d1vi2a1 15 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQ-RVNENTDCVVTVTDLADQQAFAEALASA- 91 (182)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHH-HHHHHSSCEEEEEETTCHHHHHHHHHTC-
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHH-HHHhhcCcceEeeecccccchhhhhccc-
Confidence 467899999998 8999999999999996 78899998776554333211 1122234556678999999998888876
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
|+|||+...
T Consensus 92 -diiIN~Tp~ 100 (182)
T d1vi2a1 92 -DILTNGTKV 100 (182)
T ss_dssp -SEEEECSST
T ss_pred -ceeccccCC
Confidence 999999765
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.64 E-value=0.00024 Score=56.88 Aligned_cols=118 Identities=12% Similarity=0.123 Sum_probs=77.4
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.++|.|.|+ |.+|..++..|+.++ .++.++|++.+............ ........+...+ +. +.+++. |
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~----~~~~~a--d 73 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY----DDLAGA--D 73 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG----GGGTTC--S
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc----cccCCC--c
Confidence 457999996 999999999888887 48999998776544332222221 1122333333322 22 234545 9
Q ss_pred EEEEcccccCchh---hccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 157 HVMHLAAQAGVRY---AMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 157 ~vi~~Ag~~~~~~---~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
+||-+||.....- ...+....+..|..-...+++..++......++.+|
T Consensus 74 vvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 74 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9999999743221 112356789999999999999999988775566555
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.64 E-value=0.00014 Score=57.83 Aligned_cols=114 Identities=14% Similarity=0.123 Sum_probs=71.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhh-hhccCCeEEE-EccCCCHHHHHHHhhccCcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKG-LLERAGVFVI-DADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~-~~Dl~d~~~v~~~~~~~~~d 156 (424)
++|.|+|+ |.+|..++-.|+.++ .+++++|.+++............ ........+. ..|.. .+++. |
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-------~~~~a--d 71 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-------DTANS--D 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-------GGTTC--S
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-------HhcCC--C
Confidence 57999996 999999999999887 48999998776544433322211 1111222222 22332 23444 9
Q ss_pred EEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 157 HVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 157 ~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
+||-+||.... ...+..+.+..|..-...+++...+.+....++.+|
T Consensus 72 vvvitag~~~~--~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 72 VIVVTSGAPRK--PGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp EEEECCSCC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred EEEEeeeccCC--cCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 99999997432 123345677889999999999999988775555544
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=0.00011 Score=63.02 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=55.8
Q ss_pred CCCCCCeEEEEcC----------------CChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEc
Q 042406 75 RSTRGLTVLVTGA----------------AGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDA 138 (424)
Q Consensus 75 ~~~~~~~vlItGg----------------~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~ 138 (424)
.+++||+||||+| ||-.|.+||+++.++|++|+++.-..+. .....+..+.
T Consensus 2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~------------~~p~~~~~~~- 68 (223)
T d1u7za_ 2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL------------PTPPFVKRVD- 68 (223)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC------------CCCTTEEEEE-
T ss_pred cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhccccc------------Ccccccccce-
Confidence 3578999999987 6899999999999999999999863321 1123555553
Q ss_pred cCCCHHHHHH----HhhccCccEEEEcccccCch
Q 042406 139 DINDKSLLDK----IFNVVAFTHVMHLAAQAGVR 168 (424)
Q Consensus 139 Dl~d~~~v~~----~~~~~~~d~vi~~Ag~~~~~ 168 (424)
+...+++.+ .+.. .|++|++|++....
T Consensus 69 -~~t~~~m~~~~~~~~~~--~D~~i~aAAvsDf~ 99 (223)
T d1u7za_ 69 -VMTALEMEAAVNASVQQ--QNIFIGCAAVADYR 99 (223)
T ss_dssp -CCSHHHHHHHHHHHGGG--CSEEEECCBCCSEE
T ss_pred -ehhhHHHHHHHHhhhcc--ceeEeeeechhhhh
Confidence 444444433 3344 49999999997753
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.50 E-value=0.00023 Score=57.33 Aligned_cols=117 Identities=13% Similarity=0.027 Sum_probs=69.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-------eEEEEeCCCCchhhhHHHHHhh--hhccCCeEEEEccCCCHHHHHHH
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-------GVLGLDNFNNYYETSLKKARKG--LLERAGVFVIDADINDKSLLDKI 149 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-------~V~~~~r~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~v~~~ 149 (424)
.++|.|+||+|.+|.+++-.|+..+- .+++++.+.. .........+ .........+..--. .++.
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~ 76 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM--MGVLDGVLMELQDCALPLLKDVIATDK----EEIA 76 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHHHHTCCTTEEEEEEESC----HHHH
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc--hhhhhhhhhhhcccccccccccccCcc----cccc
Confidence 46899999999999999999987642 3445544322 2222222211 112223333322222 3456
Q ss_pred hhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEec
Q 042406 150 FNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQP-AIVWAS 205 (424)
Q Consensus 150 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~-~~v~~S 205 (424)
+++. |+||-+||.... ...+..+.+..|..-.+.+.+...+..... .++.+|
T Consensus 77 ~~~~--dvVVitag~~~~--~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 77 FKDL--DVAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp TTTC--SEEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred cCCc--eEEEEecccCCC--CCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 7766 999999997442 233445678999999999988887653332 344444
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.00011 Score=60.57 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHH---HhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDK---IFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~---~~~~~~ 154 (424)
+|.+|||+||+|.+|...++.+...|.+|+++++++++.+. .+ ..+ .-++ .|..+.+..++ ...+..
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~----~~--~~G--a~~v--i~~~~~~~~~~i~~~t~~~g 97 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKI----VL--QNG--AHEV--FNHREVNYIDKIKKYVGEKG 97 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH----HH--HTT--CSEE--EETTSTTHHHHHHHHHCTTC
T ss_pred CCCEEEEEeccccccccccccccccCccccccccccccccc----cc--ccC--cccc--cccccccHHHHhhhhhccCC
Confidence 57789999999999999999999999999999975322111 11 111 1123 36666544443 344446
Q ss_pred ccEEEEccc
Q 042406 155 FTHVMHLAA 163 (424)
Q Consensus 155 ~d~vi~~Ag 163 (424)
+|++|++.|
T Consensus 98 ~d~v~d~~g 106 (174)
T d1yb5a2 98 IDIIIEMLA 106 (174)
T ss_dssp EEEEEESCH
T ss_pred ceEEeeccc
Confidence 899999876
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=97.41 E-value=0.00034 Score=57.79 Aligned_cols=79 Identities=16% Similarity=0.063 Sum_probs=49.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|.|.|+ |.+|..++..|.++|++|.+++|+.+..+...... ......+..............+.+++++. |+||
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~a--D~ii 77 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG-AIIAEGPGLAGTAHPDLLTSDIGLAVKDA--DVIL 77 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT-SEEEESSSCCEEECCSEEESCHHHHHTTC--SEEE
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-CCchhhhhhhhhhhhhhhhhhhHhHhcCC--CEEE
Confidence 78999998 99999999999999999999999654433221111 11111112222222221122356777766 9999
Q ss_pred Ecc
Q 042406 160 HLA 162 (424)
Q Consensus 160 ~~A 162 (424)
-+.
T Consensus 78 i~v 80 (184)
T d1bg6a2 78 IVV 80 (184)
T ss_dssp ECS
T ss_pred EEE
Confidence 864
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.37 E-value=0.00041 Score=56.68 Aligned_cols=78 Identities=22% Similarity=0.141 Sum_probs=49.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccC--CCHHHHHHHhhc---
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI--NDKSLLDKIFNV--- 152 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~v~~~~~~--- 152 (424)
.+.+|+|+| +|.||...++.+...|.+|++++++.++.+.. ..... . ..+..|- .+.+.+.+.+..
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a------~~~ga-~-~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVA------KNCGA-D-VTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH------HHTTC-S-EEEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHH------HHcCC-c-EEEeccccccccchhhhhhhcccc
Confidence 466899997 59999999999999999999999854422111 11111 1 2222232 344444444432
Q ss_pred cCccEEEEcccc
Q 042406 153 VAFTHVMHLAAQ 164 (424)
Q Consensus 153 ~~~d~vi~~Ag~ 164 (424)
..+|+||.++|.
T Consensus 97 ~g~D~vid~~g~ 108 (170)
T d1e3ja2 97 DLPNVTIDCSGN 108 (170)
T ss_dssp SCCSEEEECSCC
T ss_pred cCCceeeecCCC
Confidence 267999999875
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.30 E-value=0.00023 Score=57.65 Aligned_cols=73 Identities=26% Similarity=0.167 Sum_probs=53.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
.+++++|||.|+ |.+|+.+++.|.++|. +|++..|+.++........ +.. ..+.+++.+.+.+.
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~--------~~~-----~~~~~~~~~~l~~~- 85 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL--------GGE-----AVRFDELVDHLARS- 85 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH--------TCE-----ECCGGGHHHHHHTC-
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh--------hcc-----cccchhHHHHhccC-
Confidence 468899999998 9999999999999997 6889988644332222111 122 23456777888877
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
|+||++.+.
T Consensus 86 -Divi~atss 94 (159)
T d1gpja2 86 -DVVVSATAA 94 (159)
T ss_dssp -SEEEECCSS
T ss_pred -CEEEEecCC
Confidence 999999875
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.29 E-value=0.00022 Score=58.74 Aligned_cols=78 Identities=23% Similarity=0.132 Sum_probs=50.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCH-HHHHHHhhccCc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDK-SLLDKIFNVVAF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~v~~~~~~~~~ 155 (424)
.++.+|||+||+|++|...++.+...|.+|+..++++++.+... ..... .++ |..+. +...+.....++
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~------~lGa~--~vi--~~~~~~~~~~~~~~~~gv 99 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR------VLGAK--EVL--AREDVMAERIRPLDKQRW 99 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH------HTTCS--EEE--ECC---------CCSCCE
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHH------hcccc--eee--ecchhHHHHHHHhhccCc
Confidence 35778999999999999999999999999999998766432221 11111 222 22221 222233344478
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+||++.|-
T Consensus 100 D~vid~vgg 108 (176)
T d1xa0a2 100 AAAVDPVGG 108 (176)
T ss_dssp EEEEECSTT
T ss_pred CEEEEcCCc
Confidence 999999874
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.27 E-value=0.00025 Score=58.69 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---HHHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS---LLDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~v~~~~~~~~ 154 (424)
+|.+|||+||+|.+|...++.+...|.+|+++++++++. ...+ ..+...+ .|..+.+ .+.+...+.+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~----~~l~-----~~Ga~~v-i~~~~~~~~~~v~~~t~~~g 94 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR----EMLS-----RLGVEYV-GDSRSVDFADEILELTDGYG 94 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH----HHHH-----TTCCSEE-EETTCSTHHHHHHHHTTTCC
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccc----cccc-----ccccccc-ccCCccCHHHHHHHHhCCCC
Confidence 467899999999999999999999999999998854321 1111 1222222 3555544 3444444446
Q ss_pred ccEEEEccc
Q 042406 155 FTHVMHLAA 163 (424)
Q Consensus 155 ~d~vi~~Ag 163 (424)
+|++|++.|
T Consensus 95 ~d~v~d~~g 103 (183)
T d1pqwa_ 95 VDVVLNSLA 103 (183)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeccc
Confidence 899999987
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=0.00018 Score=59.45 Aligned_cols=77 Identities=18% Similarity=0.105 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH---HHHHhhccC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL---LDKIFNVVA 154 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---v~~~~~~~~ 154 (424)
++.+|+|+||+|.+|..+++.+...|.+|+++++++++.+.. + .++ .-++ .|..+.+. +.++-.+..
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~----~--~lG--a~~v--i~~~~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA----L--KAG--AWQV--INYREEDLVERLKEITGGKK 97 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH----H--HHT--CSEE--EETTTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHH----H--hcC--CeEE--EECCCCCHHHHHHHHhCCCC
Confidence 467899999999999999999999999999999865432221 1 111 1223 36665443 444444557
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
+|+|+++.+.
T Consensus 98 ~d~v~d~~g~ 107 (179)
T d1qora2 98 VRVVYDSVGR 107 (179)
T ss_dssp EEEEEECSCG
T ss_pred eEEEEeCccH
Confidence 8999999874
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00021 Score=49.93 Aligned_cols=38 Identities=32% Similarity=0.365 Sum_probs=33.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY 115 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 115 (424)
++++|+|+||+|++|...++.+...|.+|++..+++++
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k 68 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST 68 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence 56789999999999999999999999999999986543
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00027 Score=56.17 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=28.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC----CeEEEEeCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRG----DGVLGLDNFN 113 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g----~~V~~~~r~~ 113 (424)
||+|.|.||||++|+.+++.|+++. .+++.+.++.
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~ 39 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ 39 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccc
Confidence 5789999999999999999888764 2566666543
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.15 E-value=0.0012 Score=52.79 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=36.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY 115 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 115 (424)
....|+|.|.||.|.+|+.+++.|.+.|++|.+.+|+...
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~ 45 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA 45 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc
Confidence 4567899999999999999999999999999999997653
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.0019 Score=46.86 Aligned_cols=73 Identities=12% Similarity=0.063 Sum_probs=51.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
..++|+|+|.|. |--|..+++.|.++|++|++.|.+.+..... . ....+.+..... +. ..+++.
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~-------~-~~~~~~~~~~~~-~~----~~~~~~-- 65 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGLD-------K-LPEAVERHTGSL-ND----EWLMAA-- 65 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTGG-------G-SCTTSCEEESBC-CH----HHHHHC--
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhHH-------H-Hhhccceeeccc-ch----hhhccC--
Confidence 467899999998 8899999999999999999999865432111 1 123444554443 22 234444
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|.||-.-|+
T Consensus 66 d~vi~SPGi 74 (93)
T d2jfga1 66 DLIVASPGI 74 (93)
T ss_dssp SEEEECTTS
T ss_pred CEEEECCCC
Confidence 999998876
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.0013 Score=52.56 Aligned_cols=75 Identities=23% Similarity=0.216 Sum_probs=56.4
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMH 160 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~ 160 (424)
+|+|.|. |-+|..+++.|.++|++|++++.+++.... ..+.....++.++.+|.+|++.++++--+ +.|.||-
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~-----~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~-~a~~vi~ 77 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIK-----QLEQRLGDNADVIPGDSNDSSVLKKAGID-RCRAILA 77 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHH-----HHHHHHCTTCEEEESCTTSHHHHHHHTTT-TCSEEEE
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHH-----HHHHhhcCCcEEEEccCcchHHHHHhccc-cCCEEEE
Confidence 5899998 899999999999999999999986543221 11222346899999999999988776332 3488886
Q ss_pred cc
Q 042406 161 LA 162 (424)
Q Consensus 161 ~A 162 (424)
+.
T Consensus 78 ~~ 79 (153)
T d1id1a_ 78 LS 79 (153)
T ss_dssp CS
T ss_pred cc
Confidence 64
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.12 E-value=0.00033 Score=57.42 Aligned_cols=74 Identities=22% Similarity=0.212 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++++|+|+||+|.+|...++.+...|.+|++++++.++.+..+ .. +...+ .|..+ ...+.-...++|+
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~------~l---Ga~~~-i~~~~--~~~~~~~~~g~D~ 94 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL------AL---GAEEA-ATYAE--VPERAKAWGGLDL 94 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH------HT---TCSEE-EEGGG--HHHHHHHTTSEEE
T ss_pred CCCEEEEEeccccchhhhhhhhccccccccccccccccccccc------cc---cccee-eehhh--hhhhhhccccccc
Confidence 5788999999999999999999999999999998654332211 11 22111 24433 2333334446799
Q ss_pred EEEccc
Q 042406 158 VMHLAA 163 (424)
Q Consensus 158 vi~~Ag 163 (424)
||++.|
T Consensus 95 v~d~~G 100 (171)
T d1iz0a2 95 VLEVRG 100 (171)
T ss_dssp EEECSC
T ss_pred cccccc
Confidence 999876
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.12 E-value=0.0023 Score=53.63 Aligned_cols=34 Identities=29% Similarity=0.571 Sum_probs=30.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
|+|.|.|. |++|..++..|++.|++|+++|.+.+
T Consensus 1 MkI~ViGl-G~vGl~~a~~la~~g~~V~g~D~n~~ 34 (202)
T d1mv8a2 1 MRISIFGL-GYVGAVCAGCLSARGHEVIGVDVSST 34 (202)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEECC-CHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence 78999975 99999999999999999999998643
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.09 E-value=0.0018 Score=48.82 Aligned_cols=96 Identities=8% Similarity=0.007 Sum_probs=64.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+++|+|+|.|| |-+|..-++.|++.|++|++++...... ........++.+...+..+.+ +.+.
T Consensus 9 ~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~d-----l~~~-- 73 (113)
T d1pjqa1 9 QLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIPQ-------FTVWANEGMLTLVEGPFDETL-----LDSC-- 73 (113)
T ss_dssp CCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCHH-------HHHHHTTTSCEEEESSCCGGG-----GTTC--
T ss_pred EeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCChH-------HHHHHhcCCceeeccCCCHHH-----hCCC--
Confidence 478999999998 9999999999999999999998754321 111123356777777665432 3444
Q ss_pred cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 156 THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 156 d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
+.|+.+.+- . .. ...+.+.|++.+ .+|++..
T Consensus 74 ~lv~~at~d---------~----~~----n~~i~~~a~~~~---ilVNv~D 104 (113)
T d1pjqa1 74 WLAIAATDD---------D----TV----NQRVSDAAESRR---IFCNVVD 104 (113)
T ss_dssp SEEEECCSC---------H----HH----HHHHHHHHHHTT---CEEEETT
T ss_pred cEEeecCCC---------H----HH----HHHHHHHHHHcC---CEEEeCC
Confidence 777765421 1 11 134677788776 4777664
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.99 E-value=0.0017 Score=53.45 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=49.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH----HHHHhhc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL----LDKIFNV 152 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~----v~~~~~~ 152 (424)
.|.+|+|+|+ |.||...++.+...|+ +|+++++++++.+-. ...+ .-.++...-.+... +.+...+
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a------~~lG--a~~vi~~~~~~~~~~~~~i~~~~~~ 98 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA------EEIG--ADLTLNRRETSVEERRKAIMDITHG 98 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH------HHTT--CSEEEETTTSCHHHHHHHHHHHTTT
T ss_pred CCCEEEEECC-Cccchhheeccccccccccccccccccccccc------cccc--ceEEEeccccchHHHHHHHHHhhCC
Confidence 5788999997 8999999999999997 799999855432211 1111 11333222223222 3333334
Q ss_pred cCccEEEEcccc
Q 042406 153 VAFTHVMHLAAQ 164 (424)
Q Consensus 153 ~~~d~vi~~Ag~ 164 (424)
.++|+||.+.|.
T Consensus 99 ~g~Dvvid~vG~ 110 (182)
T d1vj0a2 99 RGADFILEATGD 110 (182)
T ss_dssp SCEEEEEECSSC
T ss_pred CCceEEeecCCc
Confidence 468999999875
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.0086 Score=48.43 Aligned_cols=78 Identities=18% Similarity=0.157 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh---cc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN---VV 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~---~~ 153 (424)
.+.+|+|.|+ |.+|...+..+...|. +|+++++++++.+-. ..+ ..-.++..+-.+.....+.+. +.
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a------~~~--Ga~~~~~~~~~~~~~~~~~~~~~~g~ 96 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA------KEI--GADLVLQISKESPQEIARKVEGQLGC 96 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH------HHT--TCSEEEECSSCCHHHHHHHHHHHHTS
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHH------HHh--CCcccccccccccccccccccccCCC
Confidence 4567999987 9999999999999998 799999854322211 111 122344445556555555443 23
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
++|++|.+.|.
T Consensus 97 g~Dvvid~~G~ 107 (171)
T d1pl8a2 97 KPEVTIECTGA 107 (171)
T ss_dssp CCSEEEECSCC
T ss_pred CceEEEeccCC
Confidence 67999999874
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.83 E-value=0.00067 Score=53.79 Aligned_cols=33 Identities=33% Similarity=0.321 Sum_probs=27.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC---eEEEEeC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD---GVLGLDN 111 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~---~V~~~~r 111 (424)
.|+|.|.||||++|+.|++.|.+++| ++..+..
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s 37 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS 37 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee
Confidence 37899999999999999999987764 5666654
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.001 Score=54.25 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=50.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
..++|+|+|.|+ |+.+++++..|.+.|.+|+++.|+.++.+...+... ....+..+ +..+. ...++
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~----~~~~~~~~--~~~~~-------~~~~~ 80 (170)
T d1nyta1 15 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFA----HTGSIQAL--SMDEL-------EGHEF 80 (170)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTG----GGSSEEEC--CSGGG-------TTCCC
T ss_pred CCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHh----hccccccc--ccccc-------ccccc
Confidence 457899999997 999999999999999999999997654443322221 11223332 22221 11256
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+|||+...
T Consensus 81 dliIN~Tp~ 89 (170)
T d1nyta1 81 DLIINATSS 89 (170)
T ss_dssp SEEEECCSC
T ss_pred ceeeccccc
Confidence 999998754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.78 E-value=0.0024 Score=52.15 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=49.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC---HHHHHHHhhcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND---KSLLDKIFNVV 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~v~~~~~~~ 153 (424)
.|.+|+|.|+ |.||...++.+...|+ +|+++++++++.+.. ..++ ..+++ |..+ .+.+.+...+.
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a------~~lG--a~~~i--~~~~~~~~~~v~~~t~g~ 95 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA------KFYG--ATDIL--NYKNGHIEDQVMKLTNGK 95 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH------HHHT--CSEEE--CGGGSCHHHHHHHHTTTS
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHH------HhhC--ccccc--cccchhHHHHHHHHhhcc
Confidence 4667999986 9999999999999997 799998854322111 1111 12233 4433 34455555554
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
.+|++|.++|.
T Consensus 96 G~D~vid~~g~ 106 (174)
T d1jqba2 96 GVDRVIMAGGG 106 (174)
T ss_dssp CEEEEEECSSC
T ss_pred CcceEEEccCC
Confidence 68999999985
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=96.68 E-value=0.0028 Score=51.62 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=51.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
..++|+|+|.|+ |+.++.++..|.+.+.+|+++.|+.++.+....... ...++..+.-|-.+ .. .+
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~----~~~~~~~~~~~~~~-------~~--~~ 80 (171)
T d1p77a1 15 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQ----PYGNIQAVSMDSIP-------LQ--TY 80 (171)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHG----GGSCEEEEEGGGCC-------CS--CC
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHh----hccccchhhhcccc-------cc--cc
Confidence 357889999997 889999999999988999999997654443322221 22344455444221 22 45
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|+|||+....
T Consensus 81 diiIN~tp~g 90 (171)
T d1p77a1 81 DLVINATSAG 90 (171)
T ss_dssp SEEEECCCC-
T ss_pred ceeeeccccc
Confidence 9999997653
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.68 E-value=0.0036 Score=47.89 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
..+++|+|.|| |++|..++..|.+.|.+|+++.+...
T Consensus 28 ~~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 28 PEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp TTCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred cCCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecCc
Confidence 45678999997 99999999999999999999988653
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.66 E-value=0.0013 Score=53.59 Aligned_cols=77 Identities=22% Similarity=0.248 Sum_probs=49.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh---cc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN---VV 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~---~~ 153 (424)
.+.+|+|+|++|.+|...+..+...|. .|++++++.++.+.. ..++ .-.++ |..+.+..++..+ .-
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~------~~~G--a~~~i--~~~~~~~~~~~~~~~~~~ 96 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA------KRAG--ADYVI--NASMQDPLAEIRRITESK 96 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH------HHHT--CSEEE--ETTTSCHHHHHHHHTTTS
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHH------HHcC--Cceee--ccCCcCHHHHHHHHhhcc
Confidence 567899999999999999999998884 888888754321111 1111 11333 4444433444433 33
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
.+|++|.++|.
T Consensus 97 ~~d~vid~~g~ 107 (170)
T d1jvba2 97 GVDAVIDLNNS 107 (170)
T ss_dssp CEEEEEESCCC
T ss_pred cchhhhccccc
Confidence 57999999874
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.64 E-value=0.003 Score=51.87 Aligned_cols=78 Identities=26% Similarity=0.233 Sum_probs=49.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
|+|.|.|+ |-.|..++..|++.|++|+++.|..+. +........ ....-....-..++.-.+++.+++++. |+|
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a--d~I 75 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENA--EVV 75 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccH--HHHHHHhhhhhhhhhcchhccccccccccHHHHHhcc--chh
Confidence 78999998 999999999999999999999984332 111111111 000011111111233345677888877 999
Q ss_pred EEcc
Q 042406 159 MHLA 162 (424)
Q Consensus 159 i~~A 162 (424)
|.+.
T Consensus 76 i~av 79 (180)
T d1txga2 76 LLGV 79 (180)
T ss_dssp EECS
T ss_pred hccc
Confidence 8754
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.61 E-value=0.0036 Score=51.80 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=32.7
Q ss_pred CCCeEEE-EcCCChhHHHHHHHHHhCCCeEEEEeCCCCchh
Q 042406 78 RGLTVLV-TGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYE 117 (424)
Q Consensus 78 ~~~~vlI-tGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~ 117 (424)
+|.+++| +||+|.+|...++.....|.+|+++.|+.+..+
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~ 68 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLD 68 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHH
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccc
Confidence 3555666 699999999999999899999999998765443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.0011 Score=53.44 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=32.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY 115 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 115 (424)
|||+|.|+ |.+|..++..|++.|++|++++|+...
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~ 35 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQP 35 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence 78999998 999999999999999999999997653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.0028 Score=51.34 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
..|.+|+|.|+ |.||...++.+...|+++++++++.++.+.. + .+. .-.+ .|..+.+......++ +|
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a-~-----~lG--ad~~--i~~~~~~~~~~~~~~--~D 95 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAA-K-----ALG--ADEV--VNSRNADEMAAHLKS--FD 95 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-H-----HHT--CSEE--EETTCHHHHHTTTTC--EE
T ss_pred CCCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHH-h-----ccC--CcEE--EECchhhHHHHhcCC--Cc
Confidence 35788999986 9999999999999999999999865533211 1 111 1122 366676665555554 59
Q ss_pred EEEEcccc
Q 042406 157 HVMHLAAQ 164 (424)
Q Consensus 157 ~vi~~Ag~ 164 (424)
++|.+.|.
T Consensus 96 ~vid~~g~ 103 (168)
T d1uufa2 96 FILNTVAA 103 (168)
T ss_dssp EEEECCSS
T ss_pred eeeeeeec
Confidence 99999875
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.59 E-value=0.0039 Score=47.53 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
++++++|.|| |++|-.+|..|.++|.+|+++.+.+.
T Consensus 29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence 4578999998 99999999999999999999999764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.58 E-value=0.0016 Score=52.84 Aligned_cols=75 Identities=21% Similarity=0.241 Sum_probs=49.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCC-CHHHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN-DKSLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~v~~~~~~~~~d 156 (424)
.|.+|+|.|+ |.+|...++.+...|.+|++++++.++.+..++ ++ .-+++ |.. +.+..++..+ .+|
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~------lG--a~~~i--~~~~~~~~~~~~~~--~~d 93 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK------MG--ADHYI--ATLEEGDWGEKYFD--TFD 93 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH------HT--CSEEE--EGGGTSCHHHHSCS--CEE
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhhc------cC--CcEEe--eccchHHHHHhhhc--ccc
Confidence 5778999987 999999999888889999999997765433211 11 11233 222 2233444444 459
Q ss_pred EEEEccccc
Q 042406 157 HVMHLAAQA 165 (424)
Q Consensus 157 ~vi~~Ag~~ 165 (424)
+++.+.+..
T Consensus 94 ~vi~~~~~~ 102 (168)
T d1piwa2 94 LIVVCASSL 102 (168)
T ss_dssp EEEECCSCS
T ss_pred eEEEEecCC
Confidence 999987753
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.58 E-value=0.0032 Score=52.00 Aligned_cols=76 Identities=13% Similarity=-0.020 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEE-EeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---HHHHHhhcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLG-LDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS---LLDKIFNVV 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~v~~~~~~~ 153 (424)
++.+|||+||+|.+|...++.+...|.++++ .+.+.++ ....... ...-.++ |..+.+ .+++.. ..
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~-----~~~l~~~--~gad~vi--~~~~~~~~~~~~~~~-~~ 99 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEK-----CLFLTSE--LGFDAAV--NYKTGNVAEQLREAC-PG 99 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHH-----HHHHHHH--SCCSEEE--ETTSSCHHHHHHHHC-TT
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHH-----Hhhhhhc--ccceEEe--eccchhHHHHHHHHh-cc
Confidence 3468999999999999999998889986555 4442211 1111111 1222333 444322 233333 23
Q ss_pred CccEEEEccc
Q 042406 154 AFTHVMHLAA 163 (424)
Q Consensus 154 ~~d~vi~~Ag 163 (424)
++|+||.+.|
T Consensus 100 GvDvv~D~vG 109 (187)
T d1vj1a2 100 GVDVYFDNVG 109 (187)
T ss_dssp CEEEEEESSC
T ss_pred CceEEEecCC
Confidence 6799999986
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.54 E-value=0.003 Score=47.92 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=31.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
.++|+|.|| |++|-.+|..|.+.|.+|+++.|.+.
T Consensus 22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~ 56 (117)
T d1onfa2 22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGNR 56 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhccccceeeehhcc
Confidence 478999998 99999999999999999999998653
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.50 E-value=0.0023 Score=50.52 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=25.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-C---eEEEEeC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG-D---GVLGLDN 111 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g-~---~V~~~~r 111 (424)
|+|.|.||||++|+.|++.|+++. + ++..+..
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss 36 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFST 36 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEES
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecc
Confidence 689999999999999999888753 3 5555543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=96.48 E-value=0.0073 Score=49.73 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=36.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHH
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLK 121 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~ 121 (424)
+-++|.|.|+ |.+|..++..++..|++|++.|++.+..+....
T Consensus 3 ~I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~ 45 (186)
T d1wdka3 3 DVKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGLA 45 (186)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhh
Confidence 3467999998 999999999999999999999998765544333
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.46 E-value=0.0064 Score=49.86 Aligned_cols=64 Identities=19% Similarity=0.164 Sum_probs=49.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.||+|.|.|. |-||+.+++.|..-|.+|++.+|..... +..-.++++++++..
T Consensus 39 ~l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~~~----------------------~~~~~~~l~ell~~s-- 93 (181)
T d1qp8a1 39 LIQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPKEG----------------------PWRFTNSLEEALREA-- 93 (181)
T ss_dssp CCTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCCCS----------------------SSCCBSCSHHHHTTC--
T ss_pred cccCceEEEecc-ccccccceeeeecccccccccccccccc----------------------ceeeeechhhhhhcc--
Confidence 478999999997 8899999999999999999999854310 111122467888877
Q ss_pred cEEEEcccc
Q 042406 156 THVMHLAAQ 164 (424)
Q Consensus 156 d~vi~~Ag~ 164 (424)
|+|+.+.-.
T Consensus 94 Div~~~~pl 102 (181)
T d1qp8a1 94 RAAVCALPL 102 (181)
T ss_dssp SEEEECCCC
T ss_pred chhhccccc
Confidence 999887644
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.44 E-value=0.0045 Score=46.81 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=31.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
++++|.|| |++|-.+|..|.+.|.+|+++.|...
T Consensus 23 ~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence 68999998 99999999999999999999998653
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.41 E-value=0.013 Score=47.58 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=53.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhh------------hhccCCeEEEEccCCCHHHHH
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKG------------LLERAGVFVIDADINDKSLLD 147 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~------------~~~~~~v~~~~~Dl~d~~~v~ 147 (424)
.+|-|.|- |-+|..+++.|++.|++|++++|+.++.++..+..... ...-.....+...+.+.+.+.
T Consensus 3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176)
T d2pgda2 3 ADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred CcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence 46899996 99999999999999999999999876554432211100 001123344555566666666
Q ss_pred HHhhcc----Cc-cEEEEcccc
Q 042406 148 KIFNVV----AF-THVMHLAAQ 164 (424)
Q Consensus 148 ~~~~~~----~~-d~vi~~Ag~ 164 (424)
+++++. .+ +++|++...
T Consensus 82 ~v~~~l~~~~~~g~iiid~sT~ 103 (176)
T d2pgda2 82 NFIEKLVPLLDIGDIIIDGGNS 103 (176)
T ss_dssp HHHHHHHHHCCTTCEEEECSCC
T ss_pred HHHHHHHhccccCcEEEecCcc
Confidence 555432 22 677777543
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.0037 Score=47.94 Aligned_cols=34 Identities=15% Similarity=0.234 Sum_probs=31.5
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
|+++|.|| |+||-.++..|.+.|.+|+++.|...
T Consensus 23 k~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 23 GRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEEcC-CccHHHHHHHHhcCCcEEEEEeeccc
Confidence 68999998 99999999999999999999999653
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.39 E-value=0.01 Score=47.56 Aligned_cols=106 Identities=14% Similarity=0.103 Sum_probs=66.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHh----hhhccCCeEEEEccCCCHHHHHHHhhcc-
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARK----GLLERAGVFVIDADINDKSLLDKIFNVV- 153 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~v~~~~~Dl~d~~~v~~~~~~~- 153 (424)
+++|.+.|- |-+|..+++.|+++|++|.+.+|+.+..+........ .........++..-+.+.+++++++...
T Consensus 1 M~kIg~IGl-G~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~ 79 (162)
T d3cuma2 1 MKQIAFIGL-GHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDD 79 (162)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTT
T ss_pred CCEEEEEEE-HHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccc
Confidence 468999975 9999999999999999999999976543322111100 0001133456666677777777776432
Q ss_pred ------Cc-cEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Q 042406 154 ------AF-THVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVW 203 (424)
Q Consensus 154 ------~~-d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~ 203 (424)
.+ +++|++.... |+ .+..+.+.+++.+. +|+-
T Consensus 80 ~~~~~l~~g~iiid~st~~--------p~--------~~~~~~~~~~~~gi--~~~d 118 (162)
T d3cuma2 80 GLLAHIAPGTLVLECSTIA--------PT--------SARKIHAAARERGL--AMLD 118 (162)
T ss_dssp CHHHHSCTTCEEEECSCCC--------HH--------HHHHHHHHHHHTTC--EEEE
T ss_pred cccccCCCCCEEEECCCCC--------HH--------HHHHHHHHHHHCCC--cEEe
Confidence 22 5777776541 11 24556666777664 4553
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.37 E-value=0.0042 Score=47.42 Aligned_cols=32 Identities=25% Similarity=0.140 Sum_probs=29.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF 112 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~ 112 (424)
++++|.|| |+||-.+|..|.+.|.+|+++.|+
T Consensus 21 ~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence 46999998 999999999999999999999874
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.35 E-value=0.0063 Score=48.83 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=53.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhh----hhccCCeEEEEccCCCHHHHHHHhhcc--
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKG----LLERAGVFVIDADINDKSLLDKIFNVV-- 153 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~v~~~~~Dl~d~~~v~~~~~~~-- 153 (424)
|+|-|.|- |.+|..+++.|++.|++|++.+|+.+..+......... .....+..++..=+.+.+++++++...
T Consensus 1 MkIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~ 79 (161)
T d1vpda2 1 MKVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENG 79 (161)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred CEEEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcc
Confidence 67999986 99999999999999999999999765433322110000 000123445555667777777765321
Q ss_pred ------CccEEEEcccc
Q 042406 154 ------AFTHVMHLAAQ 164 (424)
Q Consensus 154 ------~~d~vi~~Ag~ 164 (424)
+-+++|++...
T Consensus 80 ~~~~~~~g~iiid~sT~ 96 (161)
T d1vpda2 80 IIEGAKPGTVLIDMSSI 96 (161)
T ss_dssp HHHHCCTTCEEEECSCC
T ss_pred hhhccCCCCEEEECCCC
Confidence 22567776543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.25 E-value=0.0049 Score=46.99 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=31.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
.++++|.|| |++|-.+|..|.+.|.+|+++.|...
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCcEEEECC-cHHHHHHHHHhhcccceEEEEecccc
Confidence 467999998 99999999999999999999998653
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.17 E-value=0.0061 Score=46.48 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=31.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
++++|.|| |+||-.++..|.+.|.+|+++.+.+.
T Consensus 24 ~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 24 KRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CeEEEECC-CchHHHHHHHHHhhCcceeEEEeccc
Confidence 68999998 99999999999999999999998553
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.13 E-value=0.0026 Score=51.63 Aligned_cols=39 Identities=36% Similarity=0.339 Sum_probs=34.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY 116 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~ 116 (424)
++.+|||+||+|++|...++.....|++|+..++++++.
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~ 61 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAA 61 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHH
Confidence 355699999999999999999888999999999976643
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.10 E-value=0.0095 Score=45.09 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
.++++|.|| |+||-.+|..|.+.|.+|+++.+...
T Consensus 22 p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 22 PGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeecc
Confidence 367999998 99999999999999999999998654
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.0054 Score=46.31 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
++|+|.|| |++|-.++..|.+.|.+|+++.|.+.
T Consensus 22 ~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 22 ERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECC-ChhhHHHHHHhhccccEEEEEeecch
Confidence 57999998 99999999999999999999998653
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.09 E-value=0.0027 Score=52.03 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=35.3
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhH
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSL 120 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~ 120 (424)
+.++|+|+|.|+ |+.++.++..|.+.| +|+++.|+.++.+...
T Consensus 15 ~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~ 57 (177)
T d1nvta1 15 RVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALA 57 (177)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHH
Confidence 368899999997 889999999998777 9999999766554433
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.08 E-value=0.0069 Score=46.54 Aligned_cols=30 Identities=13% Similarity=0.321 Sum_probs=27.2
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGL 109 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~ 109 (424)
|+|.|.|++|-+|+.+++.+.++|+++++.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~ 30 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLK 30 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEE
Confidence 689999999999999999999999987754
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.08 E-value=0.0027 Score=51.21 Aligned_cols=34 Identities=24% Similarity=0.566 Sum_probs=31.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
|+|.|.|. |.+|..+++.|.+.|++|++.||+.+
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~ 34 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQS 34 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECCch
Confidence 68999986 99999999999999999999999643
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.06 E-value=0.011 Score=48.12 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=52.8
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEE-ccCCC-HHHHHHHhhcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVID-ADIND-KSLLDKIFNVV 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~Dl~d-~~~v~~~~~~~ 153 (424)
..|.+|+|+|+ |++|...++.+...| .+|+++|+++++.+-.++ +. ..+++. -|-.+ .+.+.+.....
T Consensus 28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~------~G--A~~~in~~~~~~~~~~~~~~~~g~ 98 (176)
T d1d1ta2 28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA------VG--ATECISPKDSTKPISEVLSEMTGN 98 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH------HT--CSEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh------cC--CcEEECccccchHHHHHHHHhccc
Confidence 35778999986 999999999999999 489999997765433221 11 112221 12221 34455555555
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
++|++|.+.|.
T Consensus 99 G~d~vi~~~g~ 109 (176)
T d1d1ta2 99 NVGYTFEVIGH 109 (176)
T ss_dssp CCCEEEECSCC
T ss_pred cceEEEEeCCc
Confidence 78999999875
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.04 E-value=0.015 Score=47.49 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=26.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC-CeEEEE
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRG-DGVLGL 109 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~ 109 (424)
|++|.|.||||++|+.|++.|.++. .+|..+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l 32 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL 32 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence 5789999999999999999999984 566554
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.03 E-value=0.0023 Score=49.44 Aligned_cols=70 Identities=21% Similarity=0.131 Sum_probs=51.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
|+|+|.|. |-+|..+++.| +|+.|++++.+++..+. ....++.++.+|.+|++.++++--+ +.+.+|
T Consensus 1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~~~~---------~~~~~~~~i~Gd~~~~~~L~~a~i~-~A~~vi 67 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENVRKK---------VLRSGANFVHGDPTRVSDLEKANVR-GARAVI 67 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTHHHH---------HHHTTCEEEESCTTSHHHHHHTTCT-TCSEEE
T ss_pred CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHHHHH---------HHhcCccccccccCCHHHHHHhhhh-cCcEEE
Confidence 57899987 88999999999 46678888876543221 1235789999999999988875222 347887
Q ss_pred Ecc
Q 042406 160 HLA 162 (424)
Q Consensus 160 ~~A 162 (424)
-+.
T Consensus 68 ~~~ 70 (129)
T d2fy8a1 68 VNL 70 (129)
T ss_dssp ECC
T ss_pred Eec
Confidence 543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=96.01 E-value=0.0015 Score=54.24 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=50.1
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.+++|.|.|| |-.|.+++..|++.|++|++++|+++..+.. ...+......+++.. .-++.-...+++++++.
T Consensus 4 ~~~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i-~~~~~n~~yl~~~~l-~~~i~~t~~l~~a~~~a-- 78 (189)
T d1n1ea2 4 LLYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLV-NEKRENVLFLKGVQL-ASNITFTSDVEKAYNGA-- 78 (189)
T ss_dssp CCCEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHH-HHHTBCTTTSTTCBC-CTTEEEESCHHHHHTTC--
T ss_pred cceeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHH-hhccccccccccccc-ccccccchhhhhccCCC--
Confidence 355678999998 9999999999999999999999965433221 111111110111110 01111122466777777
Q ss_pred cEEEEcc
Q 042406 156 THVMHLA 162 (424)
Q Consensus 156 d~vi~~A 162 (424)
|+||-+.
T Consensus 79 d~iiiav 85 (189)
T d1n1ea2 79 EIILFVI 85 (189)
T ss_dssp SCEEECS
T ss_pred CEEEEcC
Confidence 9888754
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.98 E-value=0.0051 Score=46.31 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=31.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
++++|.|| |++|-.+|..|.+.|.+|+++.+.+.
T Consensus 22 ~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 22 QHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEECC-CHHHHHHHHHHhhcccceEEEeeecc
Confidence 67999997 99999999999999999999988654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.95 E-value=0.01 Score=44.94 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
.+++|+|.|| |++|-.+|..|.+.|.+|+++.|.+.
T Consensus 21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence 4688999998 99999999999999999999998653
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.005 Score=51.10 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=36.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHH
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLK 121 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~ 121 (424)
.-|+|.|.|+ |.+|+.++..++..|++|+++|++.+..+....
T Consensus 3 ~IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~ 45 (192)
T d1f0ya2 3 IVKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKK 45 (192)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred eeEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHh
Confidence 3478999998 999999999999999999999998765544433
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.91 E-value=0.015 Score=46.02 Aligned_cols=35 Identities=26% Similarity=0.188 Sum_probs=31.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY 115 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 115 (424)
|+|.|.|. |-+|..+++.|+++|++|++.++..+.
T Consensus 1 MkIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~~ 35 (152)
T d1i36a2 1 LRVGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRSP 35 (152)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCEEEECCTTCCH
T ss_pred CEEEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchhH
Confidence 67999975 999999999999999999999886653
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=95.90 E-value=0.012 Score=48.56 Aligned_cols=40 Identities=35% Similarity=0.383 Sum_probs=35.5
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
...+.||+|.|.|. |-||+.+++.|..-|.+|+..++...
T Consensus 44 ~~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 83 (193)
T d1mx3a1 44 AARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLS 83 (193)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred ceeeeCceEEEecc-ccccccceeeeeccccceeeccCccc
Confidence 34589999999996 99999999999999999999998644
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.88 E-value=0.021 Score=46.17 Aligned_cols=119 Identities=18% Similarity=0.139 Sum_probs=68.9
Q ss_pred CCeEEEEcCCChhHHH--HHHHHHhC----CCeEEEEeCCCCchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhh
Q 042406 79 GLTVLVTGAAGFVGSH--VSLALKKR----GDGVLGLDNFNNYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~--l~~~L~~~----g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
.|+|.|.|| |.+|.. ++..|+.. +.+++++|+++++.+......... ........+.. .+| .+++++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~--~td---~~eaL~ 75 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK--TMN---LDDVII 75 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE--ESC---HHHHHT
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEE--eCC---hhhccc
Confidence 578999997 888865 34445543 459999999766544322221111 11112222221 122 456777
Q ss_pred ccCccEEEEcccccCchhhccChHH------------------------HHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 152 VVAFTHVMHLAAQAGVRYAMQNPNS------------------------YVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 152 ~~~~d~vi~~Ag~~~~~~~~~~~~~------------------------~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
+. |+|++.++.........+... ...-|+.-...+++..++......++.+|
T Consensus 76 da--d~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T 151 (171)
T d1obba1 76 DA--DFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA 151 (171)
T ss_dssp TC--SEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CC--CeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence 77 999999887443211111100 01247777888999999888775666666
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.83 E-value=0.0061 Score=49.63 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=49.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEE-ccCCC-HHHHHHHhhcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVID-ADIND-KSLLDKIFNVV 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~Dl~d-~~~v~~~~~~~ 153 (424)
..|.+|+|.|+ |++|...+..++..|. +|+++++++++.+...+ . ...+.+. .|..+ .+.+.+.....
T Consensus 27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~------~--Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2jhfa2 27 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE------V--GATECVNPQDYKKPIQEVLTEMSNG 97 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH------T--TCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH------h--CCeeEEecCCchhHHHHHHHHHhcC
Confidence 46788999999 7799999999999984 88888886654322211 1 1112221 12211 23344444444
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
++|++|.+.|.
T Consensus 98 G~D~vid~~G~ 108 (176)
T d2jhfa2 98 GVDFSFEVIGR 108 (176)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEecCCc
Confidence 78999999875
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0047 Score=50.53 Aligned_cols=38 Identities=32% Similarity=0.365 Sum_probs=33.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY 115 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 115 (424)
.+.+|||+||+|++|...++.....|++|+++++++++
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k 68 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST 68 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhH
Confidence 34579999999999999999999999999999996654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.76 E-value=0.014 Score=47.37 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=50.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCC--CHHHHHHHhhcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN--DKSLLDKIFNVV 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d~~~v~~~~~~~ 153 (424)
..|.+|+|.|+ |.||...++.+...|+ +|++.++++++.+-. +.+ ....++...-. ..+.+.+.....
T Consensus 27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a------~~~--Ga~~~i~~~~~~~~~~~~~~~~~~~ 97 (174)
T d1e3ia2 27 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKA------KAL--GATDCLNPRELDKPVQDVITELTAG 97 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH------HHT--TCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHH------HHh--CCCcccCCccchhhhhhhHhhhhcC
Confidence 35778999986 9999999999999998 577777755432111 111 12223322222 234444455555
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
++|++|.+.|.
T Consensus 98 G~d~vie~~G~ 108 (174)
T d1e3ia2 98 GVDYSLDCAGT 108 (174)
T ss_dssp CBSEEEESSCC
T ss_pred CCcEEEEeccc
Confidence 88999999985
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.75 E-value=0.023 Score=45.90 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=46.6
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEE-EEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH---HHHHhhc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVL-GLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL---LDKIFNV 152 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---v~~~~~~ 152 (424)
..+.+|+|.|+ |.||...+..+...|.+++ +.++++.+.+. . ..+. ..+++ |..+.+. +.++..+
T Consensus 27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~-----a-~~~G--a~~~i--~~~~~~~~~~i~~~t~g 95 (174)
T d1f8fa2 27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLEL-----A-KQLG--ATHVI--NSKTQDPVAAIKEITDG 95 (174)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHH-----H-HHHT--CSEEE--ETTTSCHHHHHHHHTTS
T ss_pred CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHH-----H-HHcC--CeEEE--eCCCcCHHHHHHHHcCC
Confidence 35778999997 9999999999988898654 55653322111 1 1111 22344 4444333 3333333
Q ss_pred cCccEEEEcccc
Q 042406 153 VAFTHVMHLAAQ 164 (424)
Q Consensus 153 ~~~d~vi~~Ag~ 164 (424)
++|+||.+.|.
T Consensus 96 -g~D~vid~~G~ 106 (174)
T d1f8fa2 96 -GVNFALESTGS 106 (174)
T ss_dssp -CEEEEEECSCC
T ss_pred -CCcEEEEcCCc
Confidence 68999999875
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0094 Score=47.70 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN 111 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r 111 (424)
...||+|+|.|-+.-+|+-|+..|.++|+.|++...
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~ 69 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHR 69 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECS
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhcccccccc
Confidence 478999999999999999999999999999998875
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.69 E-value=0.007 Score=48.90 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNY 115 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~ 115 (424)
++++|+|.|+ |+.+++++..|.+.|. +|.++.|+.++
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~k 53 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKT 53 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHH
Confidence 4678999997 9999999999999996 79999996654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.66 E-value=0.011 Score=45.66 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
.+++|+|.|| |++|-.++..|.+.|.+|+++.+.+.
T Consensus 34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeeccc
Confidence 4678999998 99999999999999999999998654
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.63 E-value=0.016 Score=46.60 Aligned_cols=82 Identities=20% Similarity=0.084 Sum_probs=55.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccC--CCHHHHHHHhhcc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADI--NDKSLLDKIFNVV 153 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~v~~~~~~~ 153 (424)
++.||+++|.|-|.-+|+-|+..|+++|+.|+..+........ +.. ...-......|+ ...+.+++.....
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~lk~~~~~a 98 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-----RGE--SLKLNKHHVEDLGEYSEDLLKKCSLDS 98 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-----SCC--CSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccc-----ccc--ceeeeeeccccccccchhHHhhccccC
Confidence 5789999999999999999999999999999988753211000 000 000011112222 3467788888877
Q ss_pred CccEEEEcccccC
Q 042406 154 AFTHVMHLAAQAG 166 (424)
Q Consensus 154 ~~d~vi~~Ag~~~ 166 (424)
|+||..+|...
T Consensus 99 --DIvIsavG~p~ 109 (171)
T d1edza1 99 --DVVITGVPSEN 109 (171)
T ss_dssp --SEEEECCCCTT
T ss_pred --CEEEEccCCCc
Confidence 99999888643
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.62 E-value=0.029 Score=45.36 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=50.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC--HHHHHHHhhcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND--KSLLDKIFNVV 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~v~~~~~~~ 153 (424)
..|.+|+|.|+ |.+|...++.+...|. +|+++++++++.+-.+ .+ ....++...-.| .+.+.+....-
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~------~l--Ga~~~i~~~~~d~~~~~~~~~~~~~ 96 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI------EL--GATECLNPKDYDKPIYEVICEKTNG 96 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH------HT--TCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHH------Hc--CCcEEEcCCCchhHHHHHHHHhcCC
Confidence 46778999986 9999999999999996 7888888665432221 11 122333222222 23444444444
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
.+|++|.+.|.
T Consensus 97 G~d~vid~~g~ 107 (174)
T d1p0fa2 97 GVDYAVECAGR 107 (174)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEEEEcCCC
Confidence 78999999875
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.60 E-value=0.011 Score=49.14 Aligned_cols=68 Identities=24% Similarity=0.287 Sum_probs=49.3
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
+.+.||+|.|.|- |.||+.+++.|..-|.+|++.++..+.... . .. ...+++.+++++.
T Consensus 39 ~el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~~~~~------~-----~~--------~~~~~l~~~l~~s- 97 (197)
T d1j4aa1 39 REVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRNPELE------K-----KG--------YYVDSLDDLYKQA- 97 (197)
T ss_dssp CCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCHHHH------H-----TT--------CBCSCHHHHHHHC-
T ss_pred ccccCCeEEEecc-cccchhHHHhHhhhcccccccCcccccccc------c-----ce--------eeecccccccccc-
Confidence 3578999999996 999999999999999999999875432110 0 01 1123467778877
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
|+|+.+.-.
T Consensus 98 -Dii~~~~pl 106 (197)
T d1j4aa1 98 -DVISLHVPD 106 (197)
T ss_dssp -SEEEECSCC
T ss_pred -ccccccCCc
Confidence 888876643
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.58 E-value=0.0087 Score=49.13 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=28.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEe
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLD 110 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~ 110 (424)
.+..+|.|.||||+.|+.|++.|.++.+ ++..+.
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 4556899999999999999999999853 666554
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.58 E-value=0.02 Score=46.23 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.+.+|+|.|+ |.+|...++.+...|. .|++.++++++.+. .+ . ....+++..+-.+.+.+.+.....++|
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~----~~--~--~ga~~~i~~~~~~~~~~~~~~~~~g~d 102 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKL----AE--R--LGADHVVDARRDPVKQVMELTRGRGVN 102 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHH----HH--H--TTCSEEEETTSCHHHHHHHHTTTCCEE
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHH----Hh--h--cccceeecCcccHHHHHHHhhCCCCce
Confidence 4678999986 9999999998888886 66667774322111 11 1 122344433323334444444444689
Q ss_pred EEEEcccc
Q 042406 157 HVMHLAAQ 164 (424)
Q Consensus 157 ~vi~~Ag~ 164 (424)
+||.++|.
T Consensus 103 ~vid~~g~ 110 (172)
T d1h2ba2 103 VAMDFVGS 110 (172)
T ss_dssp EEEESSCC
T ss_pred EEEEecCc
Confidence 99999985
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.51 E-value=0.053 Score=43.51 Aligned_cols=121 Identities=13% Similarity=0.108 Sum_probs=66.5
Q ss_pred CeEEEEcCC-ChhHHHHHHHHHhCC----CeEEEEeCCCCchhhhHHHH-HhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 80 LTVLVTGAA-GFVGSHVSLALKKRG----DGVLGLDNFNNYYETSLKKA-RKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 80 ~~vlItGg~-G~iG~~l~~~L~~~g----~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
|+|.|.||+ .+.+..++..++... .+++++|.+++......... ........+........+|. .+.+++.
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~---~~al~ga 78 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDR---RRALDGA 78 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCH---HHHHTTC
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCc---hhhcCCC
Confidence 579999973 345555555555432 38999998665322111111 11111112222222334443 4567777
Q ss_pred CccEEEEcccccCchhhccCh------------------HHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 154 AFTHVMHLAAQAGVRYAMQNP------------------NSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 154 ~~d~vi~~Ag~~~~~~~~~~~------------------~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
|+||+.|+....+....+. -....-|+.-...+++.+++..+...++.+|
T Consensus 79 --DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 79 --DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp --SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred --CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 9999999975422111110 0123457777888899999888775666555
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.49 E-value=0.029 Score=45.98 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=63.7
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
..+.+++|.|.|- |.||+.+++.|..-|.+|+..++...... ... . ..+.++++++..
T Consensus 40 ~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~-------------~~~--~-----~~~~l~ell~~s- 97 (188)
T d1sc6a1 40 FEARGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENKLPL-------------GNA--T-----QVQHLSDLLNMS- 97 (188)
T ss_dssp CCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCCCC-------------TTC--E-----ECSCHHHHHHHC-
T ss_pred ccccceEEEEeec-ccchhhhhhhcccccceEeeccccccchh-------------hhh--h-----hhhhHHHHHhhc-
Confidence 3578999999985 99999999999999999999998432110 010 1 113567888887
Q ss_pred ccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCccc
Q 042406 155 FTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVY 210 (424)
Q Consensus 155 ~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vy 210 (424)
|+|+.++.........- ...+++.+++. ..+|.+|-..+.
T Consensus 98 -Dii~i~~plt~~T~~li------------~~~~l~~mk~~---a~lIN~aRG~lv 137 (188)
T d1sc6a1 98 -DVVSLHVPENPSTKNMM------------GAKEISLMKPG---SLLINASRGTVV 137 (188)
T ss_dssp -SEEEECCCSSTTTTTCB------------CHHHHHHSCTT---EEEEECSCSSSB
T ss_pred -cceeecccCCcchhhhc------------cHHHHhhCCCC---CEEEEcCcHHhh
Confidence 99888775533211111 12345555442 268888876664
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.48 E-value=0.015 Score=46.65 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
.+.+|+|.|+ |.+|...++.+...|.+|++++++++
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~ 62 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDA 62 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhh
Confidence 5778999886 99999999999999999999998543
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=95.47 E-value=0.023 Score=46.73 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=35.4
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
.....++++.|.|. |.||+.+++.|..-|.+|...++...
T Consensus 42 ~~~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 81 (191)
T d1gdha1 42 GEKLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRA 81 (191)
T ss_dssp BCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred cceecccceEEeec-ccchHHHHHHHHhhcccccccccccc
Confidence 34678999999997 99999999999999999999998554
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=95.47 E-value=0.014 Score=44.58 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=31.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
.++++|.|| |+||-.+|..|.+.|.+|+++.+..
T Consensus 26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence 468999998 9999999999999999999998855
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.46 E-value=0.0075 Score=48.29 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=57.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
+.-+|+|.|| |-.|..-++....-|+.|.++|.+.+..+.... .....+++ -..+.+.+++.+++. |+
T Consensus 31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~------~~~~~~~~---~~~~~~~l~~~~~~a--Di 98 (168)
T d1pjca1 31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLET------LFGSRVEL---LYSNSAEIETAVAEA--DL 98 (168)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH------HHGGGSEE---EECCHHHHHHHHHTC--SE
T ss_pred CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHH------hhccccee---ehhhhhhHHHhhccC--cE
Confidence 3457999998 999999999999999999999996543322111 11223333 356788899999988 99
Q ss_pred EEEcccccC
Q 042406 158 VMHLAAQAG 166 (424)
Q Consensus 158 vi~~Ag~~~ 166 (424)
||.++-+.+
T Consensus 99 vI~aalipG 107 (168)
T d1pjca1 99 LIGAVLVPG 107 (168)
T ss_dssp EEECCCCTT
T ss_pred EEEeeecCC
Confidence 999987644
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.46 E-value=0.034 Score=45.85 Aligned_cols=77 Identities=18% Similarity=0.128 Sum_probs=49.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCC---HHHHHHHhhc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIND---KSLLDKIFNV 152 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~v~~~~~~ 152 (424)
..|.+|+|.|+ |.+|...+..+...|. +|++.+++.++.+.. ..-+...+ .|-.+ .+.+.++..+
T Consensus 24 ~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a---------~~~Ga~~~-~~~~~~~~~~~i~~~t~g 92 (195)
T d1kola2 24 GPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHA---------KAQGFEIA-DLSLDTPLHEQIAALLGE 92 (195)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH---------HHTTCEEE-ETTSSSCHHHHHHHHHSS
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhh---------hhccccEE-EeCCCcCHHHHHHHHhCC
Confidence 36789999986 9999888888878887 788888754322111 11233332 23333 2345555566
Q ss_pred cCccEEEEcccc
Q 042406 153 VAFTHVMHLAAQ 164 (424)
Q Consensus 153 ~~~d~vi~~Ag~ 164 (424)
..+|++|.+.|.
T Consensus 93 ~g~D~vid~vG~ 104 (195)
T d1kola2 93 PEVDCAVDAVGF 104 (195)
T ss_dssp SCEEEEEECCCT
T ss_pred CCcEEEEECccc
Confidence 578999999884
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.44 E-value=0.029 Score=40.47 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=47.9
Q ss_pred CCCCeEEEEcCCChhH-HHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 77 TRGLTVLVTGAAGFVG-SHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG-~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
...|+|.+.|- |++| +.||+.|.++|+.|.+-|+..+..... +...++.+...+-.+ . ++ ++
T Consensus 6 ~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~--------L~~~Gi~v~~g~~~~--~----i~--~~ 68 (96)
T d1p3da1 6 RRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVTQR--------LAQAGAKIYIGHAEE--H----IE--GA 68 (96)
T ss_dssp TTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHHHH--------HHHTTCEEEESCCGG--G----GT--TC
T ss_pred hhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhH--------HHHCCCeEEECCccc--c----CC--CC
Confidence 45678999986 5666 678999999999999999865422211 112466665544322 1 23 34
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|.||...++.
T Consensus 69 d~vV~S~AI~ 78 (96)
T d1p3da1 69 SVVVVSSAIK 78 (96)
T ss_dssp SEEEECTTSC
T ss_pred CEEEECCCcC
Confidence 9999888763
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=95.44 E-value=0.0095 Score=51.03 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=32.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF 112 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~ 112 (424)
.+.|+|+|.|| |..|...|..|+++|++|++++|.
T Consensus 4 ~~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 4 HSQKRVVVLGS-GVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCC
Confidence 45678999998 999999999999999999999984
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.41 E-value=0.01 Score=45.23 Aligned_cols=35 Identities=20% Similarity=0.344 Sum_probs=31.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
.++++|.|| |+||-.+|..|.+.|.+|+++.|...
T Consensus 25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccc
Confidence 368999998 99999999999999999999998654
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=95.41 E-value=0.044 Score=43.88 Aligned_cols=117 Identities=12% Similarity=0.097 Sum_probs=63.8
Q ss_pred CCeEEEEcCCChhHHH-HHHHHHhC-----CCeEEEEeCCCCchhhhHHHHHhh-hhccCCeEEEEccCCCHHHHHHHhh
Q 042406 79 GLTVLVTGAAGFVGSH-VSLALKKR-----GDGVLGLDNFNNYYETSLKKARKG-LLERAGVFVIDADINDKSLLDKIFN 151 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~-l~~~L~~~-----g~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~v~~~~~ 151 (424)
..+|.|.||++ +|.. ++..|+.+ +.+|++.|.++++++......... ........+... + +.+++++
T Consensus 3 ~~KI~iIGaGs-v~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---d~~eal~ 76 (167)
T d1u8xx1 3 SFSIVIAGGGS-TFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT--T---DPEEAFT 76 (167)
T ss_dssp CEEEEEECTTS-SSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE--S---CHHHHHS
T ss_pred CceEEEECCCh-hhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec--C---ChhhccC
Confidence 35789999844 5543 44555543 248999999776654322211111 111122222211 1 2456777
Q ss_pred ccCccEEEEcccccCchhhccChHHHHH--------------------HHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 152 VVAFTHVMHLAAQAGVRYAMQNPNSYVE--------------------SNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 152 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~--------------------~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
+. |+||+.||........ .+.... -|+.-...+++.+++..+...++.+|
T Consensus 77 ~A--D~Vvitag~~~~~g~~--rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~T 146 (167)
T d1u8xx1 77 DV--DFVMAHIRVGKYAMRA--LDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYS 146 (167)
T ss_dssp SC--SEEEECCCTTHHHHHH--HHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CC--CEEEECCCcCCCCcee--HHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 77 9999999974332111 122222 23444567777778887765676666
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.018 Score=46.22 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=34.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF 112 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~ 112 (424)
++.||+|+|.|-+.-+|+-|+..|+++|+.|++.+..
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~ 72 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK 72 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred ccccceEEEEecCCccchHHHHHHHhccCceEEEecc
Confidence 4789999999999999999999999999999998763
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.36 E-value=0.017 Score=46.84 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=27.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDN 111 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r 111 (424)
|++|.|.||||++|+.|++.|.++.+ ++..+.-
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s 34 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSS 34 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeec
Confidence 56899999999999999999998754 6666543
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.35 E-value=0.0038 Score=49.87 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=23.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD 104 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~ 104 (424)
|-+|.|.||||++|..|++.|.++.+
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHcCCC
Confidence 34799999999999999999988865
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.34 E-value=0.011 Score=46.75 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=31.0
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNY 115 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 115 (424)
|+|.+.|+ |-+|.++++.|++.|++|++.+|+.++
T Consensus 1 MkIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~ 35 (152)
T d2ahra2 1 MKIGIIGV-GKMASAIIKGLKQTPHELIISGSSLER 35 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHH
T ss_pred CEEEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHh
Confidence 67999986 999999999999999999999986543
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.26 E-value=0.02 Score=46.26 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=46.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEcc--CCCHHHHHHHhhcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD--INDKSLLDKIFNVV 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D--l~d~~~v~~~~~~~ 153 (424)
..|.+|+|.|+ |++|...++.+...|. .|++.++++++.+.. + .++ ..+++..+ -.+.+.+.+.....
T Consensus 27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~a-k-----~lG--a~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARA-K-----EFG--ATECINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-H-----HHT--CSEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHH-H-----HhC--CcEEEeCCchhhHHHHHHHHHcCC
Confidence 35778999998 6899999999999996 566666644332111 1 111 12222111 12222333333334
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
.+|++|.+.|.
T Consensus 98 g~D~vid~~G~ 108 (176)
T d2fzwa2 98 GVDYSFECIGN 108 (176)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEeeecCCC
Confidence 68999999874
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.0072 Score=47.81 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=32.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN 111 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r 111 (424)
.+++|+|||+|| |.+|..-++.|++.|++|++++.
T Consensus 10 ~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 10 QLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred eeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 368999999999 99999999999999999999964
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=95.09 E-value=0.033 Score=46.13 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=48.9
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
+.+.+|+|.|.|. |-||+.+++.|..-|.+|++.++...... ...+. ..+++++++..
T Consensus 41 ~~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~------------~~~~~--------~~~l~~l~~~~- 98 (199)
T d1dxya1 41 KELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMKGD------------HPDFD--------YVSLEDLFKQS- 98 (199)
T ss_dssp CCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSSC------------CTTCE--------ECCHHHHHHHC-
T ss_pred ccccceeeeeeec-ccccccccccccccceeeeccCCccchhh------------hcchh--------HHHHHHHHHhc-
Confidence 4678999999996 99999999999999999999998543110 11111 12466777777
Q ss_pred ccEEEEcccc
Q 042406 155 FTHVMHLAAQ 164 (424)
Q Consensus 155 ~d~vi~~Ag~ 164 (424)
|+|+.+.-.
T Consensus 99 -D~v~~~~pl 107 (199)
T d1dxya1 99 -DVIDLHVPG 107 (199)
T ss_dssp -SEEEECCCC
T ss_pred -ccceeeecc
Confidence 888776543
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.029 Score=49.32 Aligned_cols=30 Identities=30% Similarity=0.200 Sum_probs=25.3
Q ss_pred EEEcCCChhHHHHHHHHHhCCCeEEEEeCC
Q 042406 83 LVTGAAGFVGSHVSLALKKRGDGVLGLDNF 112 (424)
Q Consensus 83 lItGg~G~iG~~l~~~L~~~g~~V~~~~r~ 112 (424)
+=--.||-.|.+||+.|+.+|+.|+++.+.
T Consensus 40 ItN~SSGk~G~alA~~~~~~Ga~V~li~g~ 69 (290)
T d1p9oa_ 40 LDNFSSGRRGATSAEAFLAAGYGVLFLYRA 69 (290)
T ss_dssp EEECCCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred eCCCCchHHHHHHHHHHHHcCCEEEEEecC
Confidence 334457899999999999999999999764
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=94.88 E-value=0.025 Score=46.05 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=34.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
..++|+|+|.|| |..|...|..|+++||+|+++.+...
T Consensus 40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 40 AVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccCc
Confidence 456789999998 99999999999999999999998764
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=94.79 E-value=0.018 Score=49.47 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=32.5
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
++.++|+|.|| |..|..+|..|+++|++|+++.|++
T Consensus 2 ~~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 2 PTTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45678999998 9999999999999999999999854
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.78 E-value=0.025 Score=47.98 Aligned_cols=40 Identities=28% Similarity=0.295 Sum_probs=35.6
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
+.....++|+|.|| |..|...|..|+++|++|+++.+...
T Consensus 44 ~~~~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~~ 83 (233)
T d1djqa3 44 RQTKNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAEK 83 (233)
T ss_dssp CCCSSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CcccCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeeccc
Confidence 44568899999998 99999999999999999999998664
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.15 Score=43.39 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFN 113 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~ 113 (424)
++..+|+|.|+ |++|.+++..|++.|. +++++|.+.
T Consensus 28 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 28 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 45678999996 9999999999999997 788887543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.55 E-value=0.018 Score=46.24 Aligned_cols=35 Identities=29% Similarity=0.510 Sum_probs=29.8
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNN 114 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~ 114 (424)
+|+|+|.|. |.+|..+++.|.+.|+ +|++.|++.+
T Consensus 1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~ 37 (171)
T d2g5ca2 1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPE 37 (171)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence 467999986 9999999999999996 6888888543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=94.51 E-value=0.014 Score=47.48 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=32.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhh
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYET 118 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~ 118 (424)
|+|-|.|- |-+|..+++.|++.|++|.+.+|+.++.++
T Consensus 2 MkIGvIGl-G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~ 39 (178)
T d1pgja2 2 MDVGVVGL-GVMGANLALNIAEKGFKVAVFNRTYSKSEE 39 (178)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHH
T ss_pred CEEEEEee-hHHHHHHHHHHHHCCCeEEEEECCHHHHHH
Confidence 67889985 999999999999999999999996654433
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.48 E-value=0.034 Score=44.14 Aligned_cols=70 Identities=19% Similarity=0.116 Sum_probs=48.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.||+++|.|- |.||+.+|+.|...|.+|++.++++.+. .... ..+..+ ..+++++...
T Consensus 21 ~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp~~a------l~A~---~dG~~v--------~~~~~a~~~a-- 80 (163)
T d1li4a1 21 MIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEIDPINA------LQAA---MEGYEV--------TTMDEACQEG-- 80 (163)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHH------HHHH---HTTCEE--------CCHHHHTTTC--
T ss_pred eecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeecccchh------HHhh---cCceEe--------eehhhhhhhc--
Confidence 478999999994 9999999999999999999999843211 1111 112111 1345666666
Q ss_pred cEEEEccccc
Q 042406 156 THVMHLAAQA 165 (424)
Q Consensus 156 d~vi~~Ag~~ 165 (424)
|++|-+.|..
T Consensus 81 divvtaTGn~ 90 (163)
T d1li4a1 81 NIFVTTTGCI 90 (163)
T ss_dssp SEEEECSSCS
T ss_pred cEEEecCCCc
Confidence 8888887753
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.073 Score=40.19 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=56.2
Q ss_pred CCCCCeEEEEcCCC----------hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH
Q 042406 76 STRGLTVLVTGAAG----------FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL 145 (424)
Q Consensus 76 ~~~~~~vlItGg~G----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~ 145 (424)
..+.|+|||.|+.. +-+.+.++.|.+.|++++++..+......... . ..-+...--..+.
T Consensus 4 ~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d-------~---aD~lYfePlt~e~ 73 (127)
T d1a9xa3 4 RTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPE-------M---ADATYIEPIHWEV 73 (127)
T ss_dssp CSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGG-------G---SSEEECSCCCHHH
T ss_pred CCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChh-------h---cceeeeecCCHHH
Confidence 45668999999854 67889999999999999999877654333211 0 1112234456789
Q ss_pred HHHHhhccCccEEEEccc
Q 042406 146 LDKIFNVVAFTHVMHLAA 163 (424)
Q Consensus 146 v~~~~~~~~~d~vi~~Ag 163 (424)
+.++++..+||.|+-..|
T Consensus 74 v~~Ii~~E~pd~il~~~G 91 (127)
T d1a9xa3 74 VRKIIEKERPDAVLPTMG 91 (127)
T ss_dssp HHHHHHHHCCSEEECSSS
T ss_pred HHHHHHHhCcCCeEEEee
Confidence 999999989999986544
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=94.46 E-value=0.04 Score=45.59 Aligned_cols=37 Identities=38% Similarity=0.459 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
+++||+|+|-| .|-+|+++++.|.+.|++|++.+.+.
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~ 60 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDT 60 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchH
Confidence 58999999998 59999999999999999999988743
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.36 E-value=0.069 Score=42.42 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
.+.+|+|.|+ |.||...++.+...|++|++++++++
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~ 62 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDE 62 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHH
Confidence 4678999875 99999999999999999999988544
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.35 E-value=0.021 Score=46.64 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNN 114 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~ 114 (424)
.+|+|+|.|| |..|...|..|+++|+ +|+++.|+..
T Consensus 3 ~~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 3678999998 9999999999999998 5999998654
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=94.24 E-value=0.023 Score=45.59 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCC--eEEEEeCCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGD--GVLGLDNFNN 114 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~--~V~~~~r~~~ 114 (424)
.||+|+|.|| |++|-.++..|.+.+. +|+++++...
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~~ 38 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNTD 38 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence 4899999998 9999999999999885 7888887664
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.24 E-value=0.045 Score=44.62 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=34.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
....+|++.|.|. |.||+.+++.+..-|.+|+..++..+
T Consensus 40 ~~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~ 78 (184)
T d1ygya1 40 TEIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVS 78 (184)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred ccccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCC
Confidence 4578999999996 99999999999999999999998654
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=94.21 E-value=0.056 Score=44.19 Aligned_cols=40 Identities=18% Similarity=0.037 Sum_probs=35.3
Q ss_pred CCCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 74 PRSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 74 ~~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
...+.++++.|.|. |.||+.+++.|..-|.+|...++...
T Consensus 39 ~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 78 (188)
T d2naca1 39 AYDLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRL 78 (188)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred ceeccccceeeccc-cccchhhhhhhhccCceEEEEeeccc
Confidence 34578999999996 99999999999999999999998654
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.19 E-value=0.25 Score=37.41 Aligned_cols=88 Identities=16% Similarity=0.156 Sum_probs=55.6
Q ss_pred CCCCeEEEEcCC---ChhHHHHHHHHHhCC-CeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhc
Q 042406 77 TRGLTVLVTGAA---GFVGSHVSLALKKRG-DGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNV 152 (424)
Q Consensus 77 ~~~~~vlItGg~---G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~ 152 (424)
.+.++|.|.|+| +..|..+.+.|.+.| .+|+.+....+. -.++..+ -++.|.. .
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~--------------i~G~~~y-~sl~dlp------~- 63 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE--------------VQGVKAY-KSVKDIP------D- 63 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE--------------ETTEECB-SSTTSCS------S-
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc--------------cCCeEee-cchhhcC------C-
Confidence 355789999999 899999999987766 588888642211 0111111 2333321 1
Q ss_pred cCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 042406 153 VAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASS 206 (424)
Q Consensus 153 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS 206 (424)
.+|.++-+... ..+..+++.|.+.+++ .++.+|+
T Consensus 64 -~vDlvvi~vp~------------------~~~~~~~~~~~~~g~~-~~vi~s~ 97 (129)
T d2csua1 64 -EIDLAIIVVPK------------------RFVKDTLIQCGEKGVK-GVVIITA 97 (129)
T ss_dssp -CCSEEEECSCH------------------HHHHHHHHHHHHHTCC-EEEECCC
T ss_pred -CCceEEEecCh------------------HHhHHHHHHHHHcCCC-EEEEecc
Confidence 56988865421 1245578888888886 6777765
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=94.12 E-value=0.024 Score=39.05 Aligned_cols=35 Identities=23% Similarity=0.111 Sum_probs=31.5
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
.|+|.|.|| |.+|+.++..-.+-|.+|++++.+.+
T Consensus 1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 478999997 99999999999999999999997554
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=94.11 E-value=0.021 Score=45.07 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=30.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFNN 114 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~~ 114 (424)
|+|.+.|+ |-+|.++++.|++.| ++|.+.+|+.+
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~ 35 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAE 35 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence 68999987 999999999999887 89999999654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.08 E-value=0.026 Score=49.18 Aligned_cols=34 Identities=29% Similarity=0.304 Sum_probs=31.2
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
+|+|+|.|| |.-|...|..|+++|++|+++.+++
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 589999998 9999999999999999999998743
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=93.87 E-value=0.099 Score=41.00 Aligned_cols=65 Identities=9% Similarity=0.025 Sum_probs=43.7
Q ss_pred CCCeEEEE-cCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 78 RGLTVLVT-GAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlIt-Gg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.++.++|. .|+|+||..++..|+++|.+|+++.+...-... .|-.....+.+.+.+.+++
T Consensus 38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~-------------------~~~~~~~~~~~~l~~~GV~ 98 (156)
T d1djqa2 38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYM-------------------HFTLEYPNMMRRLHELHVE 98 (156)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHH-------------------HHTTCHHHHHHHHHHTTCE
T ss_pred cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccc-------------------cchhHHHHHHHHHhhccce
Confidence 45566665 355999999999999999999999985421110 1444555666666666556
Q ss_pred EEEEc
Q 042406 157 HVMHL 161 (424)
Q Consensus 157 ~vi~~ 161 (424)
++.+.
T Consensus 99 i~~~~ 103 (156)
T d1djqa2 99 ELGDH 103 (156)
T ss_dssp EEETE
T ss_pred EEecc
Confidence 55543
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.70 E-value=0.015 Score=49.34 Aligned_cols=37 Identities=30% Similarity=0.347 Sum_probs=33.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
+++|++|+|-|- |-+|+++++.|.+.|++|++.+.+.
T Consensus 36 ~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~ 72 (230)
T d1leha1 36 SLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNK 72 (230)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccH
Confidence 578999999996 9999999999999999999998754
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=93.60 E-value=0.068 Score=37.78 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=45.2
Q ss_pred CeEEEEcCCChhHH-HHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEE
Q 042406 80 LTVLVTGAAGFVGS-HVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHV 158 (424)
Q Consensus 80 ~~vlItGg~G~iG~-~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~v 158 (424)
|+|-++|- |++|. .||+.|+++|+.|.+-|+..+..... +...++.+..+ .+++.+ + ++|.|
T Consensus 2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~--------L~~~Gi~i~~g--h~~~~i----~--~~d~v 64 (89)
T d1j6ua1 2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEETERTAY--------LRKLGIPIFVP--HSADNW----Y--DPDLV 64 (89)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCCHHHHH--------HHHTTCCEESS--CCTTSC----C--CCSEE
T ss_pred cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCChhHHH--------HHHCCCeEEee--eccccc----C--CCCEE
Confidence 67888876 66665 78999999999999999875432221 22345555433 222222 3 34999
Q ss_pred EEccccc
Q 042406 159 MHLAAQA 165 (424)
Q Consensus 159 i~~Ag~~ 165 (424)
|...++.
T Consensus 65 V~SsAI~ 71 (89)
T d1j6ua1 65 IKTPAVR 71 (89)
T ss_dssp EECTTCC
T ss_pred EEecCcC
Confidence 9998874
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=93.47 E-value=0.034 Score=48.10 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=29.1
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
|+|.|| |.+|..+|.+|+++|.+|+++++..
T Consensus 7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 999998 9999999999999999999999853
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=93.43 E-value=0.083 Score=39.36 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=28.0
Q ss_pred CCeEEEEcCCChhHHHHHHHHHh---CCCeEEEEeCCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKK---RGDGVLGLDNFNN 114 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~---~g~~V~~~~r~~~ 114 (424)
.++++|.|| |++|-.+|..|.+ +|.+|+++.|.+.
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 468999998 9999999976654 4568999988543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.25 E-value=0.24 Score=37.81 Aligned_cols=29 Identities=28% Similarity=0.200 Sum_probs=23.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhC-CCeEEEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKKR-GDGVLGL 109 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~-g~~V~~~ 109 (424)
||.|.|++|-+|+.+++.+.+. +.++...
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~ 30 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAE 30 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence 5899999999999999988776 4565543
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=93.12 E-value=0.12 Score=38.30 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=28.9
Q ss_pred CCeEEEEcCCChhHHHHHHHHHh---CCCeEEEEeCCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKK---RGDGVLGLDNFNN 114 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~---~g~~V~~~~r~~~ 114 (424)
.++++|.|| |++|-.+|..|.+ .|.+|+++.|.+.
T Consensus 18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CCeEEEECC-ChHHHHHHHHhHhhcccccccceeccccc
Confidence 368999998 9999999987655 4889999998654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.12 E-value=0.055 Score=48.13 Aligned_cols=36 Identities=28% Similarity=0.543 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
+.|+|+|.|| |.-|..+|..|++.|++|.++.+++.
T Consensus 1 k~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3588999998 99999999999999999999987553
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=93.10 E-value=0.11 Score=41.47 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCC--CHHHHHHHhhcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADIN--DKSLLDKIFNVV 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d~~~v~~~~~~~ 153 (424)
..+.+|+|.|+ |.+|...+..++..|. .|+++++++++.+... .+ ...+++..+-. ..+.+.+.....
T Consensus 27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~------~~--GAd~~in~~~~~~~~~~~~~~~~~~ 97 (175)
T d1cdoa2 27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK------VF--GATDFVNPNDHSEPISQVLSKMTNG 97 (175)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH------HT--TCCEEECGGGCSSCHHHHHHHHHTS
T ss_pred CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHH------Hc--CCcEEEcCCCcchhHHHHHHhhccC
Confidence 46778999987 7788888888888876 6888887655432211 11 12233321111 234555555555
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
++|++|.+.|.
T Consensus 98 G~d~vid~~G~ 108 (175)
T d1cdoa2 98 GVDFSLECVGN 108 (175)
T ss_dssp CBSEEEECSCC
T ss_pred CcceeeeecCC
Confidence 78999999985
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=93.04 E-value=0.093 Score=41.37 Aligned_cols=71 Identities=20% Similarity=0.189 Sum_probs=50.2
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAF 155 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~ 155 (424)
.+.||+++|.|= |.+|+-+|+.|...|.+|++...++-. .... ...+.++. .++++++..
T Consensus 20 ~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~------alqA---~mdGf~v~--------~~~~a~~~a-- 79 (163)
T d1v8ba1 20 LISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPIC------AIQA---VMEGFNVV--------TLDEIVDKG-- 79 (163)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHH------HHHH---HTTTCEEC--------CHHHHTTTC--
T ss_pred eecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchh------hHHH---HhcCCccC--------chhHccccC--
Confidence 478999999996 999999999999999999999884321 1111 11233322 245677766
Q ss_pred cEEEEcccccC
Q 042406 156 THVMHLAAQAG 166 (424)
Q Consensus 156 d~vi~~Ag~~~ 166 (424)
|++|-+-|..+
T Consensus 80 Di~vTaTGn~~ 90 (163)
T d1v8ba1 80 DFFITCTGNVD 90 (163)
T ss_dssp SEEEECCSSSS
T ss_pred cEEEEcCCCCc
Confidence 88888877643
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=93.02 E-value=0.13 Score=40.25 Aligned_cols=35 Identities=14% Similarity=0.124 Sum_probs=28.7
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFN 113 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~ 113 (424)
||+|.|.|+||.||.....-+.+.. ++|.++.=++
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~ 37 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK 37 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 5689999999999999999888873 6787775443
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=93.01 E-value=0.23 Score=36.83 Aligned_cols=76 Identities=14% Similarity=0.075 Sum_probs=53.7
Q ss_pred CCCeEEEEcCCC----------hhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHH
Q 042406 78 RGLTVLVTGAAG----------FVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLD 147 (424)
Q Consensus 78 ~~~~vlItGg~G----------~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~ 147 (424)
..|+|||.|+.. +-+.+.++.|.+.|++++++..++....... .-..-+...--..+.+.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd~----------d~aD~lYfeplt~e~v~ 72 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDY----------DTSDRLYFEPVTLEDVL 72 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTST----------TSSSEEECCCCSHHHHH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcCh----------hhcCceEEccCCHHHHH
Confidence 567899999854 6788999999999999999987665432211 01111223344678899
Q ss_pred HHhhccCccEEEEccc
Q 042406 148 KIFNVVAFTHVMHLAA 163 (424)
Q Consensus 148 ~~~~~~~~d~vi~~Ag 163 (424)
++++..+||.|+-..|
T Consensus 73 ~Ii~~E~p~~ii~~~G 88 (121)
T d1a9xa4 73 EIVRIEKPKGVIVQYG 88 (121)
T ss_dssp HHHHHHCCSEEECSSS
T ss_pred HHHHHhCCCEEEeehh
Confidence 9998889998875543
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.00 E-value=0.2 Score=43.53 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=32.0
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN 111 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r 111 (424)
++++++|+|-|- |-+|+++++.|.+.|++|+.++-
T Consensus 33 ~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 33 GFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp SSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence 578999999996 99999999999999999998764
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.095 Score=48.61 Aligned_cols=81 Identities=17% Similarity=0.094 Sum_probs=52.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchh-----------------hh-HHHHHhhhhccCCeEEEE
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYE-----------------TS-LKKARKGLLERAGVFVID 137 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-----------------~~-~~~~~~~~~~~~~v~~~~ 137 (424)
++..+|||.|+ |+||.++++.|+..|. +++++|.+.-... .. ..+........-++..+.
T Consensus 35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 113 (426)
T d1yovb1 35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF 113 (426)
T ss_dssp HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence 45678999998 8899999999999997 7888887542110 00 011111122334566666
Q ss_pred ccCCCHHHHHHHhhccCccEEEEcc
Q 042406 138 ADINDKSLLDKIFNVVAFTHVMHLA 162 (424)
Q Consensus 138 ~Dl~d~~~v~~~~~~~~~d~vi~~A 162 (424)
.++.+.. .+++++. |+||++.
T Consensus 114 ~~i~~~~--~~~~~~~--DlVi~~~ 134 (426)
T d1yovb1 114 NKIQDFN--DTFYRQF--HIIVCGL 134 (426)
T ss_dssp SCGGGBC--HHHHTTC--SEEEECC
T ss_pred ccccchH--HHHHHhc--chheecc
Confidence 6665533 3567766 9999875
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.85 E-value=0.12 Score=39.62 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=29.9
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHh----CCCeEEEEeCCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKK----RGDGVLGLDNFNN 114 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~----~g~~V~~~~r~~~ 114 (424)
+.++++|.|| |++|-.++..|.+ .|.+|+++.+.+.
T Consensus 36 ~~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~ 75 (137)
T d1m6ia2 36 EVKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKG 75 (137)
T ss_dssp HCSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence 3578999998 9999999999864 5899999988654
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=92.77 E-value=0.056 Score=47.70 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
..+.|+|+|.|| |..|...|..|+++|++|+++.+..
T Consensus 27 ~~~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 27 TSNPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CSSCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 345679999998 9999999999999999999998743
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=92.72 E-value=0.047 Score=47.29 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=30.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
|+|+|.|| |.-|...|..|+++|++|+++.+++
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 67999998 9999999999999999999998743
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.52 E-value=0.097 Score=50.03 Aligned_cols=114 Identities=12% Similarity=0.027 Sum_probs=64.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhh--------------hHHH----HHhhhhccCCeEEEE
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYET--------------SLKK----ARKGLLERAGVFVID 137 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~--------------~~~~----~~~~~~~~~~v~~~~ 137 (424)
+...+|+|.|+ |++|.++++.|+..|. .++++|...-.... .+.. ...+.+...++.++.
T Consensus 23 L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~ 101 (529)
T d1yova1 23 LESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVE 101 (529)
T ss_dssp HHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEES
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEc
Confidence 34567999997 8899999999999995 78888764321100 0111 011111222344443
Q ss_pred ccCCCH-HHHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcccCC
Q 042406 138 ADINDK-SLLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSVYGV 212 (424)
Q Consensus 138 ~Dl~d~-~~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~vyg~ 212 (424)
.++.+. +...+++.+. |+||.+... ......+-+.|++.+. .+|++++.+.||.
T Consensus 102 ~~~~~~~~~~~~~~~~~--dvVv~~~~~-----------------~~~~~~l~~~c~~~~i--p~i~~~~~G~~G~ 156 (529)
T d1yova1 102 ESPENLLDNDPSFFCRF--TVVVATQLP-----------------ESTSLRLADVLWNSQI--PLLICRTYGLVGY 156 (529)
T ss_dssp SCHHHHHHSCGGGGGGC--SEEEEESCC-----------------HHHHHHHHHHHHHHTC--CEEEEEEETTEEE
T ss_pred CCchhhhhhHHHHhcCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCC--CEEEEeccCCEEE
Confidence 332211 0111334444 888876421 1122446677888876 4899988888773
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.30 E-value=0.099 Score=42.15 Aligned_cols=75 Identities=23% Similarity=0.162 Sum_probs=51.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEcc--------------------
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDAD-------------------- 139 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~D-------------------- 139 (424)
-+|+|.|| |-.|.+-++....-|+.|.++|.+....+..... .-.++..+
T Consensus 30 a~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l---------~~~~i~~~~~~~~~~~~~~gyA~~~s~~ 99 (183)
T d1l7da1 30 ARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVESL---------GGKFITVDDEAMKTAETAGGYAKEMGEE 99 (183)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHT---------TCEECCC---------------------
T ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh---------hcceEEEeccccccccccccchhhcCHH
Confidence 36999998 9999999999999999999999976543332111 11111111
Q ss_pred --CCCHHHHHHHhhccCccEEEEcccccC
Q 042406 140 --INDKSLLDKIFNVVAFTHVMHLAAQAG 166 (424)
Q Consensus 140 --l~d~~~v~~~~~~~~~d~vi~~Ag~~~ 166 (424)
..+.+.+.+.+.+. |+||-.+-+.+
T Consensus 100 ~~~~~~~~l~~~l~~a--DlVI~talipG 126 (183)
T d1l7da1 100 FRKKQAEAVLKELVKT--DIAITTALIPG 126 (183)
T ss_dssp --CCHHHHHHHHHTTC--SEEEECCCCTT
T ss_pred HHHHHHHHHHHHHHhh--hhheeeeecCC
Confidence 12345667777777 99999887754
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.21 E-value=0.061 Score=44.57 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=47.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchh-----hhHHHHHhhhhccCCeEEEE-ccCCCHHHHHHHhhcc
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYE-----TSLKKARKGLLERAGVFVID-ADINDKSLLDKIFNVV 153 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----~~~~~~~~~~~~~~~v~~~~-~Dl~d~~~v~~~~~~~ 153 (424)
|+|++.|. +..|..+.+.|.+.|++|..+.-.++... ......- ...++.++. .++.+.+ +.+.++..
T Consensus 1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a----~~~~i~~~~~~~~~~~~-~~~~i~~~ 74 (203)
T d2blna2 1 MKTVVFAY-HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLA----AERGIPVYAPDNVNHPL-WVERIAQL 74 (203)
T ss_dssp CEEEEEEC-HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHH----HHHTCCEECCSCCCSHH-HHHHHHHT
T ss_pred CeEEEEec-CHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHH----HHcCCcceecccccchh-hhhhhhhh
Confidence 67888865 66899999999999999876653222110 0011111 112455554 3555544 55566777
Q ss_pred CccEEEEccc
Q 042406 154 AFTHVMHLAA 163 (424)
Q Consensus 154 ~~d~vi~~Ag 163 (424)
++|++|....
T Consensus 75 ~~Dlii~~g~ 84 (203)
T d2blna2 75 SPDVIFSFYY 84 (203)
T ss_dssp CCSEEEEESC
T ss_pred cccceeeeec
Confidence 8999987754
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=91.85 E-value=0.13 Score=41.58 Aligned_cols=81 Identities=17% Similarity=0.083 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhh----------hccCCeEEEEccCCCHHHH
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL----------LERAGVFVIDADINDKSLL 146 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~----------~~~~~v~~~~~Dl~d~~~v 146 (424)
.++++||..|.+. |+ .+..|+++|++|+++|.++.............. .....+.++.+|..+....
T Consensus 19 ~~~~rvLd~GCG~--G~-~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 19 VPGARVLVPLCGK--SQ-DMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp CTTCEEEETTTCC--SH-HHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCCEEEEecCcC--CH-HHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 4677899999744 44 666888999999999997765555444332211 1234567888888775432
Q ss_pred HHHhhccCccEEEEcccc
Q 042406 147 DKIFNVVAFTHVMHLAAQ 164 (424)
Q Consensus 147 ~~~~~~~~~d~vi~~Ag~ 164 (424)
.. . .+|.|+.....
T Consensus 96 ~~--~--~~D~i~~~~~l 109 (201)
T d1pjza_ 96 DI--G--HCAAFYDRAAM 109 (201)
T ss_dssp HH--H--SEEEEEEESCG
T ss_pred cc--c--ceeEEEEEeee
Confidence 21 1 44877765443
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.82 E-value=0.052 Score=44.60 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=28.3
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
|+|.|.| .|++|..++..| ++|++|+++|.+++
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~ 33 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPS 33 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHH
Confidence 7899997 699999999766 57999999998654
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=91.49 E-value=0.42 Score=40.36 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=31.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN 111 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r 111 (424)
+++|++|+|-| .|-+|+++++.|.+.|++|+.++.
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence 47899999998 599999999999999999988774
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=91.47 E-value=0.089 Score=42.17 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
.+++|+|.|| |++|-.++..|.+.|.+|.++.+..
T Consensus 2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence 4678999998 9999999999999998876665543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=91.23 E-value=0.094 Score=45.29 Aligned_cols=31 Identities=39% Similarity=0.588 Sum_probs=28.8
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
|+|.|| |..|..+|.+|+++|++|+++++..
T Consensus 6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 899998 9999999999999999999999843
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=91.14 E-value=0.12 Score=45.96 Aligned_cols=37 Identities=22% Similarity=0.161 Sum_probs=32.0
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFNN 114 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~~ 114 (424)
++.|+|+|.|| |.-|..+|..|+++| ++|+++.|+++
T Consensus 2 ~~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 2 PTIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 46789999998 999999999999887 59999998653
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.59 E-value=0.12 Score=43.11 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=28.9
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
|+|.|| |.-|...|..|+++|++|.++.++.
T Consensus 8 viViGa-G~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGT-GITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 899996 9999999999999999999999864
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.50 E-value=0.089 Score=45.69 Aligned_cols=32 Identities=28% Similarity=0.289 Sum_probs=29.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
+|+|.|| |-.|..++..|.++|.+|+++.+.+
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4999998 8999999999999999999999854
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=90.39 E-value=0.12 Score=45.19 Aligned_cols=32 Identities=31% Similarity=0.481 Sum_probs=28.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCC
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFN 113 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~ 113 (424)
+|+|.|| |.+|..+|.+|+++|. +|++++|+.
T Consensus 3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 4899998 9999999999999996 699999853
|
| >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB species: Escherichia coli [TaxId: 562]
Probab=90.36 E-value=1.1 Score=40.71 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=57.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHH---HHHHHhhc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKS---LLDKIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~v~~~~~~ 152 (424)
.++|-+||=.+ ...-|-...+.|++.|++|+=+.+-... ...+.........+.+-+.+.+|+.+++ .+.++++.
T Consensus 8 PL~GirVld~~-~~~agp~~~~~Lad~GAeVIkvE~p~~g-d~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~~Lv~~ 85 (402)
T d1xk7a1 8 PLAGLRVVFSG-IEIAGPFAGQMFAEWGAEVIWIENVAWA-DTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMET 85 (402)
T ss_dssp TTTTCEEEEEC-CSSHHHHHHHHHHHTTCEEEEEECSSSC-CGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeC-ChhHHHHHHHHHHHhCCeEEEECCCCCC-CccccCCchhHHhCCCCeEEEEeCcCHHHHHHHHHHHhh
Confidence 57888888776 3566999999999999999998763311 0110000111122456688999999876 46677776
Q ss_pred cCccEEEEcccc
Q 042406 153 VAFTHVMHLAAQ 164 (424)
Q Consensus 153 ~~~d~vi~~Ag~ 164 (424)
. |+||+|--.
T Consensus 86 a--Dv~i~n~rp 95 (402)
T d1xk7a1 86 T--DIFIEASKG 95 (402)
T ss_dssp C--SEEEEECSS
T ss_pred c--CCceeeecc
Confidence 6 999998543
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=90.35 E-value=0.43 Score=36.99 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=28.6
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhC--CCeEEEEeCCC
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKR--GDGVLGLDNFN 113 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~--g~~V~~~~r~~ 113 (424)
.|+|.|.|+||.||....+-+.+. .++|+++.=++
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~ 38 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR 38 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence 478999999999999999988876 46788775443
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.30 E-value=0.021 Score=48.26 Aligned_cols=28 Identities=36% Similarity=0.617 Sum_probs=24.8
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLG 108 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~ 108 (424)
|+|+|.|| |-+|..+|.+|+++|++|++
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v 28 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYHSVLQ 28 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHTTTSS
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCceE
Confidence 68999998 99999999999999976443
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=90.17 E-value=0.088 Score=41.81 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=26.8
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-CCeEE-EEeC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKR-GDGVL-GLDN 111 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~-~~~r 111 (424)
+.++|+|.|++|-+|+.+++.+.+. +.+++ +++|
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~ 38 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALER 38 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3467999999999999999999887 45554 3444
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=89.96 E-value=0.15 Score=41.53 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=28.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC--CeEEEEeCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG--DGVLGLDNFN 113 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g--~~V~~~~r~~ 113 (424)
|||+|.|| |++|-.+|..|.+.+ .+|+++.|..
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 78999998 999999999999874 5799988754
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=89.80 E-value=1.4 Score=32.29 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=29.0
Q ss_pred CeEEEEcCC---ChhHHHHHHHHHhCCCeEEEEeCC
Q 042406 80 LTVLVTGAA---GFVGSHVSLALKKRGDGVLGLDNF 112 (424)
Q Consensus 80 ~~vlItGg~---G~iG~~l~~~L~~~g~~V~~~~r~ 112 (424)
|+|.|.|+| +-.|..+.+.|++.|++|+.+...
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~ 37 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPN 37 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccc
Confidence 679999998 678999999999999998888654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.41 E-value=0.22 Score=42.44 Aligned_cols=33 Identities=33% Similarity=0.538 Sum_probs=29.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCC-CeEEEEeCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRG-DGVLGLDNFN 113 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r~~ 113 (424)
++|+|.|| |.-|..++..|.+.| +.|+++.+..
T Consensus 2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSS 35 (288)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 57999998 999999999999999 5899998854
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=89.21 E-value=0.19 Score=44.07 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=31.7
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
+.-.|+|.|| |.-|-.++.+|.++|.+|+++++.++
T Consensus 6 ~~~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 6 EEVDVLVVGA-GFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp SEEEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCCCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 4456999998 99999999999999999999998543
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.16 E-value=0.13 Score=45.05 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=30.4
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
..|+|.|| |.-|..+|+.|++.|++|.++.+++.
T Consensus 2 ~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 2 YDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred ccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 46899998 99999999999999999999987553
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=88.93 E-value=1.3 Score=34.26 Aligned_cols=81 Identities=12% Similarity=-0.020 Sum_probs=46.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhh---hccCCeEEEEccCCCHHHHHHHhhcc----
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGL---LERAGVFVIDADINDKSLLDKIFNVV---- 153 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~v~~~~~~~---- 153 (424)
||-+.|- |-+|..+++.|++.|+.| +.+|+.++............ ..-.....+...+.+.+.+.....+.
T Consensus 2 kIg~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~ 79 (156)
T d2cvza2 2 KVAFIGL-GAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL 79 (156)
T ss_dssp CEEEECC-STTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred eEEEEeH-HHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhccccccc
Confidence 4788886 999999999999999865 57776654433222211100 01112334444555666665555433
Q ss_pred -CccEEEEccc
Q 042406 154 -AFTHVMHLAA 163 (424)
Q Consensus 154 -~~d~vi~~Ag 163 (424)
+-.++|.+..
T Consensus 80 ~~~~~iid~sT 90 (156)
T d2cvza2 80 REGTYWVDATS 90 (156)
T ss_dssp CTTEEEEECSC
T ss_pred ccccccccccc
Confidence 3355666554
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.62 E-value=0.96 Score=37.93 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=30.6
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEEeCC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKR-GDGVLGLDNF 112 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~~r~ 112 (424)
++++++|+|-|- |-+|.++++.|.+. |..|+.+.-.
T Consensus 29 ~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~ 65 (239)
T d1gtma1 29 TLKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDS 65 (239)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHhcCcceeecccc
Confidence 478999999996 99999999999865 8988877643
|
| >d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: 2-methylacyl-CoA racemase Mcr species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.27 E-value=1.6 Score=38.73 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=53.7
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHH---HHHHhhc
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSL---LDKIFNV 152 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---v~~~~~~ 152 (424)
.++|-+||=.+- ..-|-...+.|+..|++|+-+.+-... ...... ..+.+=..+.+|+.+++. +.+++++
T Consensus 3 PL~girVld~~~-~~agp~~~~~lad~GA~VikvE~p~~~-----~~~~~~-~~nr~K~si~lDl~~~~g~~~~~~Lv~~ 75 (359)
T d1x74a1 3 PLSGLRVVELAG-IGPGPHAAMILGDLGADVVRIDRPSSV-----DGISRD-AMLRNRRIVTADLKSDQGLELALKLIAK 75 (359)
T ss_dssp TTTTCEEEEECC-STHHHHHHHHHHHTTCEEEEEECC----------CCCC-GGGCSCEEEECCTTSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEcCC-chHHHHHHHHHHHhCCEEEEECCCCCC-----Cchhhh-hhhCCCeEEEEeCcCHHHHHHHHHHHhh
Confidence 356666766653 566889999999999999998753211 011111 123566788999998764 5666776
Q ss_pred cCccEEEEcccc
Q 042406 153 VAFTHVMHLAAQ 164 (424)
Q Consensus 153 ~~~d~vi~~Ag~ 164 (424)
. |+||+|--.
T Consensus 76 a--Dv~i~n~~p 85 (359)
T d1x74a1 76 A--DVLIEGYRP 85 (359)
T ss_dssp C--SEEEECSCT
T ss_pred C--CEEEecCCC
Confidence 6 999998654
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.15 E-value=2.1 Score=32.39 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=30.7
Q ss_pred CCCeEEEEcCC---ChhHHHHHHHHHhCCCeEEEEeCC
Q 042406 78 RGLTVLVTGAA---GFVGSHVSLALKKRGDGVLGLDNF 112 (424)
Q Consensus 78 ~~~~vlItGg~---G~iG~~l~~~L~~~g~~V~~~~r~ 112 (424)
+.|+|.|.|+| +-.|..+++.|.+.|++|+.+...
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~ 55 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPK 55 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCc
Confidence 45789999998 789999999999999999888654
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=87.68 E-value=0.7 Score=37.56 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=45.5
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVA 154 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~ 154 (424)
...|++||=.|++.+ .++..++..|. .|++++.+....+. .+. ...++.++.+|+.+.+ -+
T Consensus 46 dl~Gk~VLDlGcGtG---~l~i~a~~~ga~~V~~vDid~~a~~~----ar~---N~~~~~~~~~D~~~l~--------~~ 107 (197)
T d1ne2a_ 46 NIGGRSVIDAGTGNG---ILACGSYLLGAESVTAFDIDPDAIET----AKR---NCGGVNFMVADVSEIS--------GK 107 (197)
T ss_dssp SSBTSEEEEETCTTC---HHHHHHHHTTBSEEEEEESCHHHHHH----HHH---HCTTSEEEECCGGGCC--------CC
T ss_pred CCCCCEEEEeCCCCc---HHHHHHHHcCCCcccccccCHHHHHH----HHH---ccccccEEEEehhhcC--------Cc
Confidence 467889999887554 24455777875 69999985432221 111 2357899999986532 26
Q ss_pred ccEEEEcc
Q 042406 155 FTHVMHLA 162 (424)
Q Consensus 155 ~d~vi~~A 162 (424)
+|+||.|-
T Consensus 108 fD~Vi~NP 115 (197)
T d1ne2a_ 108 YDTWIMNP 115 (197)
T ss_dssp EEEEEECC
T ss_pred ceEEEeCc
Confidence 79999874
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=87.38 E-value=0.26 Score=41.59 Aligned_cols=76 Identities=12% Similarity=-0.029 Sum_probs=51.3
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.++++||=.|++.+. ++..|+++|.+|+++|.+....+.+...... ...++.++.+|+.+.+ +.+ .+|
T Consensus 36 ~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~---~~~~v~~~~~d~~~~~-----~~~-~fD 103 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRS---QGLKPRLACQDISNLN-----INR-KFD 103 (246)
T ss_dssp CCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHH---TTCCCEEECCCGGGCC-----CSC-CEE
T ss_pred CCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhccccccc---cCccceeeccchhhhc-----ccc-ccc
Confidence 456789999976553 6778889999999999876554443332221 2347899999987643 122 579
Q ss_pred EEEEcccc
Q 042406 157 HVMHLAAQ 164 (424)
Q Consensus 157 ~vi~~Ag~ 164 (424)
+|+...+.
T Consensus 104 ~i~~~~~~ 111 (246)
T d1y8ca_ 104 LITCCLDS 111 (246)
T ss_dssp EEEECTTG
T ss_pred ccceeeee
Confidence 99976443
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=87.31 E-value=0.27 Score=41.12 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=28.6
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCC-eEEEEeCCC
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGD-GVLGLDNFN 113 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~-~V~~~~r~~ 113 (424)
+|+|.|| |.-|...|..|.++|. +|+++.+++
T Consensus 2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 4899998 9999999999999995 799998754
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=87.07 E-value=0.3 Score=38.20 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=26.7
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
||+|.|| |++|-.++..|. ++.+|+++.+..
T Consensus 2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred eEEEECC-cHHHHHHHHHHH-cCCCEEEEeccc
Confidence 6899998 999999999885 578999998754
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=87.07 E-value=1 Score=35.18 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=43.4
Q ss_pred CeEEEEcCCChhHHHHHHH-HHhC-----CCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 80 LTVLVTGAAGFVGSHVSLA-LKKR-----GDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~-L~~~-----g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
|+|.|.|| |.+|..++-. |++. +.+++++|.+.++.......... .......+.. . ++ .++.+++.
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~--~~~~~~~~~~-t-~~---~~~~l~~a 72 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKR--LVKDRFKVLI-S-DT---FEGAVVDA 72 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHH--HHTTSSEEEE-C-SS---HHHHHTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHh--hhccCceEEE-e-cC---cccccCCC
Confidence 68999998 5466655533 3221 35899999976654432211111 1122223222 1 22 34567767
Q ss_pred CccEEEEcccccC
Q 042406 154 AFTHVMHLAAQAG 166 (424)
Q Consensus 154 ~~d~vi~~Ag~~~ 166 (424)
|+||..|+...
T Consensus 73 --DvVVita~~~~ 83 (162)
T d1up7a1 73 --KYVIFQFRPGG 83 (162)
T ss_dssp --SEEEECCCTTH
T ss_pred --CEEEEecccCC
Confidence 99999998743
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=86.94 E-value=0.85 Score=37.48 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=51.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
.+|++||-.|+..+--..+..++...+..|+.++.+++..+....... .....++.++.+|..+. ......+|
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~--~~~~~n~~~~~~d~~~~-----~~~~~~fD 146 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE--RLGIENVIFVCGDGYYG-----VPEFSPYD 146 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH--HTTCCSEEEEESCGGGC-----CGGGCCEE
T ss_pred cccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHh--hhcccccccccCchHHc-----cccccchh
Confidence 367889988865544444444455556689999987655444433332 23446788888886542 12233579
Q ss_pred EEEEccccc
Q 042406 157 HVMHLAAQA 165 (424)
Q Consensus 157 ~vi~~Ag~~ 165 (424)
+|+.+++..
T Consensus 147 ~I~~~~~~~ 155 (213)
T d1dl5a1 147 VIFVTVGVD 155 (213)
T ss_dssp EEEECSBBS
T ss_pred hhhhhccHH
Confidence 999888753
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=86.86 E-value=0.61 Score=36.43 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=23.0
Q ss_pred CCeEEEEcCCChhHHHHH-HHHHhCC-CeEEEE-eCCCC
Q 042406 79 GLTVLVTGAAGFVGSHVS-LALKKRG-DGVLGL-DNFNN 114 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~-~~L~~~g-~~V~~~-~r~~~ 114 (424)
..++.|.| +|.||+.+. +.|.+.. .+++.+ +|+.+
T Consensus 4 kirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~ 41 (157)
T d1nvmb1 4 KLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAA 41 (157)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTT
T ss_pred CcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchh
Confidence 46899999 899999654 5544443 466665 55443
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.62 E-value=0.43 Score=41.52 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=29.1
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCC
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNF 112 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~ 112 (424)
.+|+|.|| |.-|...|..|.++|++|+++-.+
T Consensus 6 ~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~ 37 (449)
T d2dw4a2 6 GKVIIIGS-GVSGLAAARQLQSFGMDVTLLEAR 37 (449)
T ss_dssp CEEEEECC-BHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCC
Confidence 46999998 999999999999999999999654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.61 E-value=0.72 Score=38.31 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=58.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhh---hhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKG---LLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
.+|.+||-.|.+.+--.++..++.....+|+.+++..+-.+...+..... .....++.++.+|..+. .....
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~-----~~~~~ 149 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG-----YAEEA 149 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC-----CGGGC
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc-----cchhh
Confidence 46789999998877777777778877889999999776555444333322 22346788888887532 12333
Q ss_pred CccEEEEccccc
Q 042406 154 AFTHVMHLAAQA 165 (424)
Q Consensus 154 ~~d~vi~~Ag~~ 165 (424)
.+|+|+.+++..
T Consensus 150 ~fD~I~~~~~~~ 161 (224)
T d1i1na_ 150 PYDAIHVGAAAP 161 (224)
T ss_dssp CEEEEEECSBBS
T ss_pred hhhhhhhhcchh
Confidence 679999988763
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=86.35 E-value=3.2 Score=30.11 Aligned_cols=32 Identities=28% Similarity=0.352 Sum_probs=27.3
Q ss_pred CCeEEEEcCCChhHHHHHHHHHhCCCeEEEEe
Q 042406 79 GLTVLVTGAAGFVGSHVSLALKKRGDGVLGLD 110 (424)
Q Consensus 79 ~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~ 110 (424)
||+|||.=-.-.+-..+...|.+.|++|+..+
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a 32 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEA 32 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEE
Confidence 68899998888999999999988999887554
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=86.15 E-value=0.37 Score=40.43 Aligned_cols=32 Identities=34% Similarity=0.461 Sum_probs=29.6
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
|+|.|| |-.|...|..|+++|++|++++++..
T Consensus 5 ViIIGa-G~aGl~aA~~la~~G~~V~liEk~~~ 36 (251)
T d2i0za1 5 VIVIGG-GPSGLMAAIGAAEEGANVLLLDKGNK 36 (251)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 899998 99999999999999999999998654
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=86.03 E-value=0.76 Score=37.56 Aligned_cols=86 Identities=17% Similarity=0.101 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHH----HHhhhhccCCeEEEEccCCCHHHHHHHhhcc
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKK----ARKGLLERAGVFVIDADINDKSLLDKIFNVV 153 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~ 153 (424)
..|+|++.|. +..+..+.+.|.+.|++|.++.-.++........ .........++.+......+.+...+.++..
T Consensus 2 ~~mKI~f~G~-~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (206)
T d1fmta2 2 ESLRIIFAGT-PDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAEL 80 (206)
T ss_dssp CCCEEEEEEC-SHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHT
T ss_pred CCcEEEEECC-CHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhh
Confidence 3578999975 7788899999999999877665332211110000 0011112245666666776777778888888
Q ss_pred CccEEEEcccc
Q 042406 154 AFTHVMHLAAQ 164 (424)
Q Consensus 154 ~~d~vi~~Ag~ 164 (424)
++|+++.....
T Consensus 81 ~~d~~v~~~~~ 91 (206)
T d1fmta2 81 QADVMVVVAYG 91 (206)
T ss_dssp TCSEEEEESCC
T ss_pred cceEEEeeccc
Confidence 89988876543
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=85.88 E-value=0.35 Score=41.15 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDN 111 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r 111 (424)
++++++|+|-| .|-+|+++++.|.+.|++|+.++-
T Consensus 33 ~l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 33 TLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp CSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence 47899999999 599999999999999999987753
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.76 E-value=0.38 Score=42.23 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=28.6
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
|+|.|| |.-|...|..|+++|++|+++.+.+
T Consensus 2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 789998 9999999999999999999998744
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=85.69 E-value=1.7 Score=36.23 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHh-CCCeEEEEeC
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKK-RGDGVLGLDN 111 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~-~g~~V~~~~r 111 (424)
++++++|+|-| .|-+|+++++.|.+ .|+.|+.++-
T Consensus 28 ~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd 63 (234)
T d1b26a1 28 DPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVSD 63 (234)
T ss_dssp CTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeec
Confidence 46889999998 59999999999975 5999987763
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.43 E-value=1.1 Score=35.68 Aligned_cols=30 Identities=30% Similarity=0.455 Sum_probs=24.9
Q ss_pred eEEEEcCCChhHHHHHHHHHhCC-CeEEEEeC
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRG-DGVLGLDN 111 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g-~~V~~~~r 111 (424)
+|.|-| .|-||+.+++.|.+++ .+|+.+..
T Consensus 3 KVaING-fGRIGR~v~Ral~~~~dievVaInd 33 (178)
T d1b7go1 3 NVAVNG-YGTIGKRVADAIIKQPDMKLVGVAK 33 (178)
T ss_dssp EEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred EEEEEC-CCHHHHHHHHHHHhCCCCEEEEEEC
Confidence 689998 6999999999999886 57776644
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.21 E-value=1.2 Score=36.56 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++.+||..|++++--.++..+|. |.+|+.++++.+-....... .......++.++.+|..+. .....++|.
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~--l~~~g~~nv~~~~gd~~~g-----~~~~~pfD~ 148 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRN--LERAGVKNVHVILGDGSKG-----FPPKAPYDV 148 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHH--HHHTTCCSEEEEESCGGGC-----CGGGCCEEE
T ss_pred ccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHH--HHHcCCceeEEEECccccC-----CcccCccee
Confidence 57789988876555555655565 46799999865433332222 2223457899999998642 223336799
Q ss_pred EEEcccccC
Q 042406 158 VMHLAAQAG 166 (424)
Q Consensus 158 vi~~Ag~~~ 166 (424)
|+-.++...
T Consensus 149 Iiv~~a~~~ 157 (215)
T d1jg1a_ 149 IIVTAGAPK 157 (215)
T ss_dssp EEECSBBSS
T ss_pred EEeeccccc
Confidence 998887643
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=83.71 E-value=1.4 Score=35.24 Aligned_cols=78 Identities=10% Similarity=0.107 Sum_probs=49.1
Q ss_pred CCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
..+++||=.|++.+ .++..|++.+.+|++++.+....................++++.+|+.+. +..-.+|
T Consensus 51 ~~~~~VLDiGcG~G---~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~------~~~~~fD 121 (194)
T d1dusa_ 51 DKDDDILDLGCGYG---VIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN------VKDRKYN 121 (194)
T ss_dssp CTTCEEEEETCTTS---HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT------CTTSCEE
T ss_pred CCCCeEEEEeecCC---hhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh------hccCCce
Confidence 35677887775433 23445667788999999876554444433333333445789999998652 1223579
Q ss_pred EEEEccc
Q 042406 157 HVMHLAA 163 (424)
Q Consensus 157 ~vi~~Ag 163 (424)
.|+.+..
T Consensus 122 ~Ii~~~p 128 (194)
T d1dusa_ 122 KIITNPP 128 (194)
T ss_dssp EEEECCC
T ss_pred EEEEccc
Confidence 9998754
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.68 E-value=1.1 Score=36.56 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=45.6
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCch--hhhHHHHHhhhhccCCeEEE------EccCCCHHHHHHHhh
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYY--ETSLKKARKGLLERAGVFVI------DADINDKSLLDKIFN 151 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~v~~~------~~Dl~d~~~v~~~~~ 151 (424)
|+|++.|. +..|..+.+.|.+.|++|+++.-.+++. .........+ .++.++ .-+..+++.+ +.++
T Consensus 1 MkI~~~G~-~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~----~~ipv~~~~~~~~~~~~~~~~~-~~l~ 74 (203)
T d2bw0a2 1 MKIAVIGQ-SLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEK----DGVPVFKYSRWRAKGQALPDVV-AKYQ 74 (203)
T ss_dssp CEEEEECC-HHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHH----HTCCEEECSCCEETTEECHHHH-HHHH
T ss_pred CEEEEEcC-CHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHh----cCCcccccccccccccccHHHH-HHHH
Confidence 68899975 7889999999999999988664221111 1111111111 122222 2344455544 4456
Q ss_pred ccCccEEEEccc
Q 042406 152 VVAFTHVMHLAA 163 (424)
Q Consensus 152 ~~~~d~vi~~Ag 163 (424)
..+||++|....
T Consensus 75 ~~~~Dliv~~~~ 86 (203)
T d2bw0a2 75 ALGAELNVLPFC 86 (203)
T ss_dssp TTCCSEEEESSC
T ss_pred HhCCCceEEeec
Confidence 668999987653
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=83.60 E-value=1.8 Score=35.37 Aligned_cols=78 Identities=17% Similarity=0.051 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.+++||=.|++.+ . ++..|+++|.+|+++|.+.+......... ......+++++.+|..+.. +....+|+
T Consensus 15 ~~~rVLDiGcG~G--~-~~~~l~~~~~~v~gvD~s~~~i~~A~~~~--~~~~~~~i~~~~~d~~~l~-----~~~~~fD~ 84 (231)
T d1vl5a_ 15 GNEEVLDVATGGG--H-VANAFAPFVKKVVAFDLTEDILKVARAFI--EGNGHQQVEYVQGDAEQMP-----FTDERFHI 84 (231)
T ss_dssp SCCEEEEETCTTC--H-HHHHHGGGSSEEEEEESCHHHHHHHHHHH--HHTTCCSEEEEECCC-CCC-----SCTTCEEE
T ss_pred CcCEEEEecccCc--H-HHHHHHHhCCEEEEEECCHHHHhhhhhcc--ccccccccccccccccccc-----cccccccc
Confidence 4578999997544 2 24567788999999998765443332222 2234578999999988742 22225699
Q ss_pred EEEccccc
Q 042406 158 VMHLAAQA 165 (424)
Q Consensus 158 vi~~Ag~~ 165 (424)
|+.+....
T Consensus 85 v~~~~~l~ 92 (231)
T d1vl5a_ 85 VTCRIAAH 92 (231)
T ss_dssp EEEESCGG
T ss_pred cccccccc
Confidence 99877653
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=83.58 E-value=0.34 Score=39.63 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=27.0
Q ss_pred CeEEEEcCCChhHH-----HHHHHHHhCCCeEEEEe
Q 042406 80 LTVLVTGAAGFVGS-----HVSLALKKRGDGVLGLD 110 (424)
Q Consensus 80 ~~vlItGg~G~iG~-----~l~~~L~~~g~~V~~~~ 110 (424)
|+++|||-+.++|+ .|+..|+++|++|.+++
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id 37 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence 68999997769998 57889999999999986
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.32 E-value=1.5 Score=33.75 Aligned_cols=35 Identities=20% Similarity=0.092 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCe-EEEEeCCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDG-VLGLDNFN 113 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~-V~~~~r~~ 113 (424)
-+++|+|.|| |..|...+..+++.|++ |+++.|..
T Consensus 44 ~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 44 IRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 4567999987 99999999999999974 77887754
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=83.31 E-value=1.3 Score=34.71 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=25.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhC-CCeEEEE-eCC
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKR-GDGVLGL-DNF 112 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~-~r~ 112 (424)
+.++|.|.|. |.+|+..++.|.+. +.+++++ +|+
T Consensus 2 ~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~ 37 (170)
T d1f06a1 2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRR 37 (170)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESS
T ss_pred CcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 4467999995 99999999999886 4566644 443
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=83.26 E-value=0.51 Score=34.12 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=32.1
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
...++|+|+|.|+ |--|..++..|++.+.+|+.+.|..
T Consensus 28 ~~f~gK~VlVVG~-g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 28 ELFVGESVLVVGG-ASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp GGGTTCCEEEECS-SHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred hhcCCCeEEEECC-CCCHHHHHHHHHHhcCEEEEEEecC
Confidence 3468999999997 8999999999999988877776644
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.12 E-value=0.92 Score=36.64 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=52.2
Q ss_pred EEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEEEccc
Q 042406 84 VTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVMHLAA 163 (424)
Q Consensus 84 ItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi~~Ag 163 (424)
+|.|+|+.-.++.+.+ . +.+|+++|++............ ....++.++.++..+...+.+-+....+|.|+--.|
T Consensus 30 ~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~---~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlG 104 (192)
T d1m6ya2 30 CTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLK---EFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLG 104 (192)
T ss_dssp TTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTG---GGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECS
T ss_pred ecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhc---cccccccchhHHHhhHHHHHHHcCCCCcceeeeccc
Confidence 4777777777777765 3 4689999997654333322211 124579999999988776655554446799988888
Q ss_pred ccC
Q 042406 164 QAG 166 (424)
Q Consensus 164 ~~~ 166 (424)
+.+
T Consensus 105 vSs 107 (192)
T d1m6ya2 105 VST 107 (192)
T ss_dssp CCH
T ss_pred hhH
Confidence 754
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.05 E-value=0.76 Score=37.69 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCCh-hHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCcc
Q 042406 78 RGLTVLVTGAAGF-VGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFT 156 (424)
Q Consensus 78 ~~~~vlItGg~G~-iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d 156 (424)
+|++||=.|++.+ .-.+|++ +...| +|+++|.++........... ...++.++..|..+++.....+..+ |
T Consensus 56 pg~~VLDlGcG~G~~~~~la~-~v~~g-~V~gvDis~~~i~~a~~~a~----~~~ni~~i~~d~~~~~~~~~~~~~v--d 127 (209)
T d1nt2a_ 56 GDERVLYLGAASGTTVSHLAD-IVDEG-IIYAVEYSAKPFEKLLELVR----ERNNIIPLLFDASKPWKYSGIVEKV--D 127 (209)
T ss_dssp SSCEEEEETCTTSHHHHHHHH-HTTTS-EEEEECCCHHHHHHHHHHHH----HCSSEEEECSCTTCGGGTTTTCCCE--E
T ss_pred CCCEEEEeCCcCCHHHHHHHH-hccCC-eEEEEeCCHHHHHHHHHHhh----ccCCceEEEeeccCccccccccceE--E
Confidence 5788998887555 4444444 33445 89999987655444333222 2368999999999987766666544 8
Q ss_pred EEEEcc
Q 042406 157 HVMHLA 162 (424)
Q Consensus 157 ~vi~~A 162 (424)
+++|.-
T Consensus 128 ~v~~~~ 133 (209)
T d1nt2a_ 128 LIYQDI 133 (209)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 888754
|
| >d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Formyl-CoA transferase species: Oxalobacter formigenes [TaxId: 847]
Probab=82.52 E-value=14 Score=32.92 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=56.8
Q ss_pred CCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHH------h--hhhccCCeEEEEccCCCHH---
Q 042406 76 STRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKAR------K--GLLERAGVFVIDADINDKS--- 144 (424)
Q Consensus 76 ~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~------~--~~~~~~~v~~~~~Dl~d~~--- 144 (424)
+++|-+||=.+ ...-|-...+.|+.-|++|+-+.+-... ...+.... . -...+.+=+.+.+|+.+++
T Consensus 3 PL~GirVld~~-~~~agp~~~~~LadlGAeVIkvE~p~~g-d~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~ 80 (427)
T d2vjma1 3 PLDGINVLDFT-HVQAGPACTQMMGFLGANVIKIERRGSG-DMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKE 80 (427)
T ss_dssp TTTTCEEEECC-CTTHHHHHHHHHHHTTCEEEEEECTTTC-SGGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHH
T ss_pred CCCCCEEEEcC-ChhHHHHHHHHHHHhCCeEEEECCCCCC-CcccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHH
Confidence 47888888776 3566889999999999999999863211 00000000 0 0112345678999999876
Q ss_pred HHHHHhhccCccEEEEcccc
Q 042406 145 LLDKIFNVVAFTHVMHLAAQ 164 (424)
Q Consensus 145 ~v~~~~~~~~~d~vi~~Ag~ 164 (424)
.+.++++.. |+||+|-..
T Consensus 81 ~~~~Lv~~a--Dv~i~n~~p 98 (427)
T d2vjma1 81 LLEQMIKKA--DVMVENFGP 98 (427)
T ss_dssp HHHHHHHHC--SEEEECCST
T ss_pred HHHHHHHhC--CeeeECCCc
Confidence 477788877 999999643
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=82.15 E-value=1.7 Score=35.20 Aligned_cols=74 Identities=22% Similarity=0.182 Sum_probs=48.9
Q ss_pred CeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
.+||=.|++.+. ++..|++.|++|+++|.+.+........... ....+.++.+|..+.. +....+|+|+
T Consensus 39 ~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~~---~~~~~~~~~~d~~~l~-----~~~~~fD~I~ 107 (226)
T d1ve3a1 39 GKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAKS---RESNVEFIVGDARKLS-----FEDKTFDYVI 107 (226)
T ss_dssp CEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCCEEEECCTTSCC-----SCTTCEEEEE
T ss_pred CEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhcc---cccccccccccccccc-----ccCcCceEEE
Confidence 468999986644 5567888999999999876544443332222 2346788888887742 2223569998
Q ss_pred Ecccc
Q 042406 160 HLAAQ 164 (424)
Q Consensus 160 ~~Ag~ 164 (424)
.....
T Consensus 108 ~~~~l 112 (226)
T d1ve3a1 108 FIDSI 112 (226)
T ss_dssp EESCG
T ss_pred Eecch
Confidence 77654
|
| >d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Glycosyl transferases group 1 domain: Glycogen synthase 1, GlgA species: Pyrococcus abyssi [TaxId: 29292]
Probab=82.03 E-value=0.68 Score=41.92 Aligned_cols=32 Identities=31% Similarity=0.391 Sum_probs=25.0
Q ss_pred CeEEEEcC------CChhH---HHHHHHHHhCCCeEEEEeC
Q 042406 80 LTVLVTGA------AGFVG---SHVSLALKKRGDGVLGLDN 111 (424)
Q Consensus 80 ~~vlItGg------~G~iG---~~l~~~L~~~g~~V~~~~r 111 (424)
|+||+.+. +||+| ..|+++|+++||+|+++..
T Consensus 1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp 41 (437)
T d2bisa1 1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP 41 (437)
T ss_dssp CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence 67777664 46776 5679999999999999863
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=81.98 E-value=0.78 Score=34.26 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=54.5
Q ss_pred eEEEEcCCChhHHHHHHHHHh-CCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccEEE
Q 042406 81 TVLVTGAAGFVGSHVSLALKK-RGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTHVM 159 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~-~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~vi 159 (424)
+|+|.|| |.+|+.|++.+.. .|++++++..+... .....-.++.++. .+.+.++.++ .+++.+
T Consensus 5 ~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~---------k~G~~I~Gi~V~~-----~~~l~~~~~~-~i~iai 68 (126)
T d2dt5a2 5 GLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPE---------KVGRPVRGGVIEH-----VDLLPQRVPG-RIEIAL 68 (126)
T ss_dssp EEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTT---------TTTCEETTEEEEE-----GGGHHHHSTT-TCCEEE
T ss_pred eEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchH---------hcCCEECCEEEec-----HHHHHHHHhh-cccEEE
Confidence 6999998 9999999997754 36787776432211 0001113555553 2345565554 456655
Q ss_pred EcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCCcc
Q 042406 160 HLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWASSSSV 209 (424)
Q Consensus 160 ~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~SS~~v 209 (424)
-+... .....+++.|.+.+++ .+..++....
T Consensus 69 ~~i~~------------------~~~~~I~d~l~~~gIk-~I~~f~~~~l 99 (126)
T d2dt5a2 69 LTVPR------------------EAAQKAADLLVAAGIK-GILNFAPVVL 99 (126)
T ss_dssp ECSCH------------------HHHHHHHHHHHHHTCC-EEEECSSSCC
T ss_pred EeCCH------------------HHHHHHHHHHHHcCCC-EEeecCceee
Confidence 44321 0123467777788875 6777665433
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=81.59 E-value=0.68 Score=40.12 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=28.9
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCCC
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNFN 113 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~ 113 (424)
|+|.|| |..|...+..|+++|.+|+++.+..
T Consensus 19 VlVIG~-G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 19 VVVVGS-GGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence 899997 9999999999999999999998754
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.45 E-value=0.31 Score=42.27 Aligned_cols=107 Identities=15% Similarity=0.176 Sum_probs=56.4
Q ss_pred CCCCeEEEEcCCChhHHHHHHHH----HhCCC-------eEEEEeCCCCchhhhHHHHHhhhhccCCeEEEE-ccCCCHH
Q 042406 77 TRGLTVLVTGAAGFVGSHVSLAL----KKRGD-------GVLGLDNFNNYYETSLKKARKGLLERAGVFVID-ADINDKS 144 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l~~~L----~~~g~-------~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~-~Dl~d~~ 144 (424)
++..+|+|.|| |--|-.+++.| .+.|. +++++|+.--- .+.+...+...+..+.+ .+-....
T Consensus 23 l~d~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv-----~~~r~~~~~~~k~~~a~~~~~~~~~ 96 (294)
T d1pj3a1 23 ISEHKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLL-----VKGRKAKIDSYQEPFTHSAPESIPD 96 (294)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEEC-----BTTCSSCCCTTTGGGCBCCCSSCCS
T ss_pred HHHcEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCc-----cCCCCcccHHHHHHhhccccccchh
Confidence 44456899987 66665555554 44453 59999873210 00010001111111111 1112234
Q ss_pred HHHHHhhccCccEEEEcccccCchhhccChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 042406 145 LLDKIFNVVAFTHVMHLAAQAGVRYAMQNPNSYVESNIAGFVNLLETCKSSDPQPAIVWAS 205 (424)
Q Consensus 145 ~v~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~~v~~S 205 (424)
.+.++++.+++|++|=+.+..+.- +..+++.+.+.+..+.|.-+|
T Consensus 97 ~L~e~i~~~kptvliG~S~~~g~f----------------t~evi~~Ma~~~~~PIIFaLS 141 (294)
T d1pj3a1 97 TFEDAVNILKPSTIIGVAGAGRLF----------------TPDVIRAMASINERPVIFALS 141 (294)
T ss_dssp SHHHHHHHHCCSEEEECCCSSCCS----------------CHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHhcCCceEEEecCCCCcC----------------CHHHHHHHHhcCCCcEEEEcc
Confidence 677787777899999888764321 245777777666553444333
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=81.23 E-value=0.33 Score=38.76 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=24.8
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeC
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDN 111 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r 111 (424)
+|+|.|| |++|-.++..|.+.|.+|.++.+
T Consensus 5 ~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~ 34 (183)
T d1d7ya1 5 PVVVLGA-GLASVSFVAELRQAGYQGLITVV 34 (183)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCSCEEEE
T ss_pred CEEEECc-cHHHHHHHHHHHhcCCceEEEEE
Confidence 4899997 99999999999999976555443
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=81.20 E-value=0.65 Score=40.80 Aligned_cols=32 Identities=31% Similarity=0.307 Sum_probs=28.4
Q ss_pred EEEEcCCChhHHHHHHHHH-----hCCCeEEEEeCCCC
Q 042406 82 VLVTGAAGFVGSHVSLALK-----KRGDGVLGLDNFNN 114 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~-----~~g~~V~~~~r~~~ 114 (424)
|+|.|| |-.|..+|..|+ ++|++|+++.|.+.
T Consensus 10 V~IvGa-G~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 10 VLIVGA-GPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred EEEECc-CHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 899998 999999999997 47999999998653
|
| >d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Hypothetical protein YfdW species: Escherichia coli [TaxId: 562]
Probab=81.07 E-value=18 Score=32.09 Aligned_cols=86 Identities=12% Similarity=0.086 Sum_probs=56.6
Q ss_pred CCCCCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHH------h--hhhccCCeEEEEccCCCHHH-
Q 042406 75 RSTRGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKAR------K--GLLERAGVFVIDADINDKSL- 145 (424)
Q Consensus 75 ~~~~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~------~--~~~~~~~v~~~~~Dl~d~~~- 145 (424)
.+++|-+||=.+ ...-|-...+.|+.-|++|+-+-+-... +..+.... . -...+.+=..+.+|+.+++.
T Consensus 3 ~PL~GirVld~~-~~~agp~~~~~Lad~GAeVIkvE~p~~g-d~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~ 80 (417)
T d1q7ea_ 3 TPLQGIKVLDFT-GVQSGPSCTQMLAWFGADVIKIERPGVG-DVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGK 80 (417)
T ss_dssp CTTTTCEEEECC-CTTHHHHHHHHHHHTTCEEEEEECTTTC-CGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHH
T ss_pred CCCCCCEEEEcC-ChhHHHHHHHHHHHhCCeEEEECCCCCC-CchhccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHH
Confidence 357787777666 3566889999999999999999753210 00000000 0 01123456789999998764
Q ss_pred --HHHHhhccCccEEEEcccc
Q 042406 146 --LDKIFNVVAFTHVMHLAAQ 164 (424)
Q Consensus 146 --v~~~~~~~~~d~vi~~Ag~ 164 (424)
+.++++.. |+||+|--.
T Consensus 81 ~~~~~Li~~a--Dv~i~n~~p 99 (417)
T d1q7ea_ 81 EVMEKLIREA--DILVENFHP 99 (417)
T ss_dssp HHHHHHHHHC--SEEEECCCC
T ss_pred HHHHHHHhcC--cccEeccCC
Confidence 56788877 999999644
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.02 E-value=0.53 Score=38.86 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=29.0
Q ss_pred CCeEEEEcCCChhHH-----HHHHHHHhCCCeEEEEeCC
Q 042406 79 GLTVLVTGAAGFVGS-----HVSLALKKRGDGVLGLDNF 112 (424)
Q Consensus 79 ~~~vlItGg~G~iG~-----~l~~~L~~~g~~V~~~~r~ 112 (424)
+|.|.|+++-|++|+ .|+..|+++|.+|.++|-+
T Consensus 1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D 39 (232)
T d1hyqa_ 1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDAD 39 (232)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 467999999999998 5678888999999999864
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=80.93 E-value=2.5 Score=36.70 Aligned_cols=79 Identities=16% Similarity=0.052 Sum_probs=48.3
Q ss_pred CCCeEEEEc-CCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhh-ccCc
Q 042406 78 RGLTVLVTG-AAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFN-VVAF 155 (424)
Q Consensus 78 ~~~~vlItG-g~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~-~~~~ 155 (424)
++++||=.. ++|.++- .+++.|++|+.+|.+...................+++++..|+.+. +++..+ +.++
T Consensus 132 ~~~rVLdlf~~tG~~sl----~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~--l~~~~~~~~~f 205 (309)
T d2igta1 132 RPLKVLNLFGYTGVASL----VAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF--IQREERRGSTY 205 (309)
T ss_dssp SCCEEEEETCTTCHHHH----HHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH--HHHHHHHTCCB
T ss_pred CCCeEEEecCCCcHHHH----HHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHh--HHHHhhcCCCC
Confidence 467777554 4444443 4557899999999876554444333333333445789999988643 333332 3367
Q ss_pred cEEEEcc
Q 042406 156 THVMHLA 162 (424)
Q Consensus 156 d~vi~~A 162 (424)
|+||..-
T Consensus 206 D~IilDP 212 (309)
T d2igta1 206 DIILTDP 212 (309)
T ss_dssp SEEEECC
T ss_pred CEEEECC
Confidence 9999753
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=80.84 E-value=0.82 Score=38.42 Aligned_cols=33 Identities=30% Similarity=0.388 Sum_probs=30.2
Q ss_pred eEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCC
Q 042406 81 TVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 81 ~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~ 114 (424)
.|+|.|| |--|...|..|+++|.+|.++.++..
T Consensus 6 DViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~~ 38 (253)
T d2gqfa1 6 ENIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGKK 38 (253)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred cEEEECc-CHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4899998 99999999999999999999998654
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=80.81 E-value=0.62 Score=38.50 Aligned_cols=34 Identities=32% Similarity=0.486 Sum_probs=28.9
Q ss_pred CCeEEEEcCCChhHH-----HHHHHHHhCCCeEEEEeCC
Q 042406 79 GLTVLVTGAAGFVGS-----HVSLALKKRGDGVLGLDNF 112 (424)
Q Consensus 79 ~~~vlItGg~G~iG~-----~l~~~L~~~g~~V~~~~r~ 112 (424)
+|.|.|+|+-|++|+ .|+..|+++|.+|.++|-+
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D 40 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 467999999999998 5678888999999999853
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=80.75 E-value=0.74 Score=40.97 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=28.0
Q ss_pred EEEEcCCChhHHHHHHHHHhCCCeEEEEeCC
Q 042406 82 VLVTGAAGFVGSHVSLALKKRGDGVLGLDNF 112 (424)
Q Consensus 82 vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~ 112 (424)
|+|+|+ |+-|..+|.+|++.|++|.++-+-
T Consensus 5 VIVVGs-G~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 5 AVVIGT-GYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEeCc-CHHHHHHHHHHHHCcCeEEEEecC
Confidence 789996 999999999999999999999884
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.62 E-value=1.6 Score=34.56 Aligned_cols=71 Identities=8% Similarity=0.032 Sum_probs=41.7
Q ss_pred CeEEEEcCCChhHHHHHHHHHhC-CCeEEEE-eCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 80 LTVLVTGAAGFVGSHVSLALKKR-GDGVLGL-DNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 80 ~~vlItGg~G~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
++|.|.|. |.+|+..++.|... +.+|+++ +++.++.... ...........+ .++++++++..++|+
T Consensus 2 iki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~----~~~~~~~~~~~~-------~~~~~~ll~~~~iD~ 69 (184)
T d1ydwa1 2 IRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAF----ATANNYPESTKI-------HGSYESLLEDPEIDA 69 (184)
T ss_dssp EEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHH----HHHTTCCTTCEE-------ESSHHHHHHCTTCCE
T ss_pred eEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccc----hhccccccceee-------cCcHHHhhhccccce
Confidence 47899995 88999999999876 5677755 5543322111 111111112222 234566777667899
Q ss_pred EEEcc
Q 042406 158 VMHLA 162 (424)
Q Consensus 158 vi~~A 162 (424)
|+-+.
T Consensus 70 v~I~t 74 (184)
T d1ydwa1 70 LYVPL 74 (184)
T ss_dssp EEECC
T ss_pred eeecc
Confidence 98653
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=80.31 E-value=0.73 Score=39.30 Aligned_cols=38 Identities=16% Similarity=0.063 Sum_probs=32.3
Q ss_pred CCCCeEEEEcCCChhHHHH-----HHHHHhCCCeEEEEeCCCC
Q 042406 77 TRGLTVLVTGAAGFVGSHV-----SLALKKRGDGVLGLDNFNN 114 (424)
Q Consensus 77 ~~~~~vlItGg~G~iG~~l-----~~~L~~~g~~V~~~~r~~~ 114 (424)
..+++|+|+.|=|++|+.. +..|+++|++|.++|-+..
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~ 59 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 59 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 4677899998899999964 7899999999999998643
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=80.13 E-value=2.4 Score=34.83 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCChhHHHHHHHHHhCCCeEEEEeCCCCchhhhHHHHHhhhhccCCeEEEEccCCCHHHHHHHhhccCccE
Q 042406 78 RGLTVLVTGAAGFVGSHVSLALKKRGDGVLGLDNFNNYYETSLKKARKGLLERAGVFVIDADINDKSLLDKIFNVVAFTH 157 (424)
Q Consensus 78 ~~~~vlItGg~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~v~~~~~~~~~d~ 157 (424)
.|++||=.|++.+ .++..|++++.+|+++|.+......+.+.... ....++.++++|+.+.. +..-.+|+
T Consensus 16 ~~~rILDiGcGtG---~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~--~~~~~~~~~~~d~~~~~-----~~~~~fD~ 85 (234)
T d1xxla_ 16 AEHRVLDIGAGAG---HTALAFSPYVQECIGVDATKEMVEVASSFAQE--KGVENVRFQQGTAESLP-----FPDDSFDI 85 (234)
T ss_dssp TTCEEEEESCTTS---HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH--HTCCSEEEEECBTTBCC-----SCTTCEEE
T ss_pred CCCEEEEeCCcCc---HHHHHHHHhCCeEEEEeCChhhhhhhhhhhcc--ccccccccccccccccc-----ccccccce
Confidence 5778999997655 34456677889999999876544443332222 23457999999987632 22225798
Q ss_pred EEEcccc
Q 042406 158 VMHLAAQ 164 (424)
Q Consensus 158 vi~~Ag~ 164 (424)
|+.+-..
T Consensus 86 v~~~~~l 92 (234)
T d1xxla_ 86 ITCRYAA 92 (234)
T ss_dssp EEEESCG
T ss_pred eeeecee
Confidence 8876554
|