Citrus Sinensis ID: 042503
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | 2.2.26 [Sep-21-2011] | |||||||
| O80488 | 484 | Pentatricopeptide repeat- | yes | no | 0.997 | 0.983 | 0.603 | 1e-175 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.997 | 0.891 | 0.382 | 1e-103 | |
| Q9FMA1 | 530 | Pentatricopeptide repeat- | no | no | 0.970 | 0.873 | 0.405 | 1e-100 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.972 | 0.718 | 0.364 | 3e-95 | |
| Q9FNN7 | 511 | Pentatricopeptide repeat- | no | no | 0.947 | 0.884 | 0.387 | 6e-95 | |
| Q9FIF7 | 544 | Putative pentatricopeptid | no | no | 0.985 | 0.863 | 0.355 | 3e-94 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.916 | 0.605 | 0.385 | 2e-93 | |
| P0C899 | 686 | Putative pentatricopeptid | no | no | 0.962 | 0.669 | 0.352 | 3e-90 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.987 | 0.757 | 0.363 | 7e-90 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.958 | 0.542 | 0.346 | 1e-88 |
| >sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190 OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 616 bits (1589), Expect = e-175, Method: Compositional matrix adjust.
Identities = 288/477 (60%), Positives = 369/477 (77%), Gaps = 1/477 (0%)
Query: 1 IERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQM 60
IERK+LRLLHG NTRT L +IHAH LRH LH SNL+LAHF+S+CG+L+ YA ++F+ +
Sbjct: 3 IERKLLRLLHGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHI 62
Query: 61 RNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQ 120
+NP+VL+FN+MIK YSL GP E + F+ +K+ GIW DEYT+APLLK+C + DLR G+
Sbjct: 63 QNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGK 122
Query: 121 CVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKG 180
CVHGE+IR+GF R G IRIGVVELYTS G+M D KVFDEMS R+V+V NLMI GFC G
Sbjct: 123 CVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSG 182
Query: 181 DVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLP 240
DV++GL+LF++M ERS+VSWN MISSL K GRD EAL LF EM DQ F+ DEATVV VLP
Sbjct: 183 DVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLP 242
Query: 241 ICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVV 300
I A LG +D G+WIHS AESSGL++ ++VGNALVDFYCK G L+ A +F+++ R+NVV
Sbjct: 243 ISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVV 302
Query: 301 SWNAMISGLAFNGRGELGVELYEQMIAKG-VSPNKATFVGVLTCCAHAGLVEKARELFAS 359
SWN +ISG A NG+GE G++L++ MI +G V+PN+ATF+GVL CC++ G VE+ ELF
Sbjct: 303 SWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGL 362
Query: 360 MTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVE 419
M + EHYG MVD++ RSG + EA+ +++M + NAA+WGSLLS+CR+HG V+
Sbjct: 363 MMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVK 422
Query: 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLI 476
LAE A EL+ +EP NSGNYVLLSN+YAE GRW D E +R M++N ++KS GQS I
Sbjct: 423 LAEVAAMELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/478 (38%), Positives = 294/478 (61%), Gaps = 2/478 (0%)
Query: 1 IERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQM 60
+E + L +R +I+A + H L QS+ ++ V C + ++ YAT++FNQ+
Sbjct: 9 VENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQV 68
Query: 61 RNPSVLLFNSMIKAYSLNGPSEEPVKLF-ALLKNLGIWPDEYTFAPLLKACLGVGDLRVG 119
NP+V L+NS+I+AY+ N + ++++ LL+ PD +TF + K+C +G +G
Sbjct: 69 SNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLG 128
Query: 120 QCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKK 179
+ VHG + + G ++++Y + D KVFDEM RDVI N ++ G+ +
Sbjct: 129 KQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARL 188
Query: 180 GDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVL 239
G + K LF M ++++VSW MIS G EA+ F EM+ E DE ++++VL
Sbjct: 189 GQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVL 248
Query: 240 PICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV 299
P CA+LG++++G+WIH YAE G + K V NAL++ Y KCG++ A +F ++ K+V
Sbjct: 249 PSCAQLGSLELGKWIHLYAERRG-FLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDV 307
Query: 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFAS 359
+SW+ MISG A++G +E + +M V PN TF+G+L+ C+H G+ ++ F
Sbjct: 308 ISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDM 367
Query: 360 MTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVE 419
M + I P +EHYGC++DVL R+G + A ++ ++M ++P++ IWGSLLSSCRT G+++
Sbjct: 368 MRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLD 427
Query: 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477
+A A+ L+ LEP + GNYVLL+NIYA+ G+W+D LR +R N+KK+PG SLIE
Sbjct: 428 VALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIE 485
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 367 bits (942), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/478 (40%), Positives = 296/478 (61%), Gaps = 15/478 (3%)
Query: 9 LHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLF 68
+HG N +T L Q H + + L++ NL +A F+ C ++YA +F P+ L
Sbjct: 23 IHGNNLKT-LKQSHCYMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLH 81
Query: 69 NSMIKAYSL-NGPSEEPV------KLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQC 121
N+MI+A SL + P+ + KL+AL PD +TF +LK + V D+ G+
Sbjct: 82 NTMIRALSLLDEPNAHSIAITVYRKLWALCAK----PDTFTFPFVLKIAVRVSDVWFGRQ 137
Query: 122 VHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGD 181
+HG+++ GF+ + G++++Y SCG + D K+FDEM +DV V N ++ G+ K G+
Sbjct: 138 IHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGE 197
Query: 182 VDKGLYLFREMR--ERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVL 239
+D+ L M R+ VSW +IS KSGR SEA+ +F M + E DE T++AVL
Sbjct: 198 MDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVL 257
Query: 240 PICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV 299
CA LG++++G+ I SY + G+ R VS+ NA++D Y K G + A +VF+ + +NV
Sbjct: 258 SACADLGSLELGERICSYVDHRGMNR-AVSLNNAVIDMYAKSGNITKALDVFECVNERNV 316
Query: 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFAS 359
V+W +I+GLA +G G + ++ +M+ GV PN TF+ +L+ C+H G V+ + LF S
Sbjct: 317 VTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNS 376
Query: 360 MTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVE 419
M + I PN+EHYGCM+D+LGR+G +REA ++I+SM + NAAIWGSLL++ H +E
Sbjct: 377 MRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLE 436
Query: 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477
L E A+ ELI LEP NSGNY+LL+N+Y+ GRWD++ +R M+ VKK G+S IE
Sbjct: 437 LGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIE 494
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 349 bits (895), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 178/488 (36%), Positives = 291/488 (59%), Gaps = 24/488 (4%)
Query: 13 NTRT--HLTQIHAHFLRHKLHQSNLILAHFVSVCGTLN----EIKYATKIFNQMRNPSVL 66
N RT L+QIHA F++ + L A + C T + ++ YA KIFNQM +
Sbjct: 32 NCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCF 91
Query: 67 LFNSMIKAYSLNGPSEEPVKL---FALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVH 123
+N++I+ +S + + + + + ++ + + P+ +TF +LKAC G ++ G+ +H
Sbjct: 92 SWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIH 151
Query: 124 GEIIRSGFERFGSIRIGVVELYTSCGQMDDG------------MKVFDEMSHRD--VIVR 169
G ++ GF + +V +Y CG M D M V + RD +++
Sbjct: 152 GLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLW 211
Query: 170 NLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFE 229
N+MI G+ + GD LF +MR+RSVVSWN MIS +G +A+ +F EM+
Sbjct: 212 NVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIR 271
Query: 230 LDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARN 289
+ T+V+VLP +RLG++++G+W+H YAE SG+ V +G+AL+D Y KCGI++ A +
Sbjct: 272 PNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV-LGSALIDMYSKCGIIEKAIH 330
Query: 290 VFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL 349
VF+ +PR+NV++W+AMI+G A +G+ ++ + +M GV P+ ++ +LT C+H GL
Sbjct: 331 VFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGL 390
Query: 350 VEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLL 409
VE+ R F+ M + + P +EHYGCMVD+LGRSG + EA + I +M I+P+ IW +LL
Sbjct: 391 VEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALL 450
Query: 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKK 469
+CR G+VE+ + L+++ P +SG YV LSN+YA G W + +R+ M+E +++K
Sbjct: 451 GACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRK 510
Query: 470 SPGQSLIE 477
PG SLI+
Sbjct: 511 DPGCSLID 518
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (893), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 178/459 (38%), Positives = 279/459 (60%), Gaps = 7/459 (1%)
Query: 18 LTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSL 77
+ Q+HAH LR + ++ +L + + + YA K+F+ +N L+N +I+AY +
Sbjct: 4 IKQLHAHCLRTGVDETKDLLQRLL----LIPNLVYARKLFDHHQNSCTFLYNKLIQAYYV 59
Query: 78 NGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSI 137
+ E + L+ LL G+ P +TF + A R + +H + RSGFE
Sbjct: 60 HHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFC 119
Query: 138 RIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSV 197
++ Y G + +VFDEMS RDV V N MI G+ ++GD+ + LF M ++V
Sbjct: 120 CTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNV 179
Query: 198 VSWNLMISSLGKSGRDSEALRLFHEM-RDQAFELDEATVVAVLPICARLGAVDIGQWIHS 256
SW +IS ++G SEAL++F M +D++ + + TVV+VLP CA LG ++IG+ +
Sbjct: 180 TSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEG 239
Query: 257 YAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEI-PRKNVVSWNAMISGLAFNGRG 315
YA +G + + V NA ++ Y KCG++D A+ +F+E+ ++N+ SWN+MI LA +G+
Sbjct: 240 YARENGFFDNIY-VCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKH 298
Query: 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGC 375
+ + L+ QM+ +G P+ TFVG+L C H G+V K +ELF SM +H I P LEHYGC
Sbjct: 299 DEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGC 358
Query: 376 MVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435
M+D+LGR G ++EAYDLI++M ++P+A +WG+LL +C HG+VE+AE A + L LEP N
Sbjct: 359 MIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTN 418
Query: 436 SGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQS 474
GN V++SNIYA +WD +R M++ + K+ G S
Sbjct: 419 PGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYS 457
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (886), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 169/475 (35%), Positives = 285/475 (60%), Gaps = 5/475 (1%)
Query: 3 RKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN 62
+ ++ +L H+ IHA +R Q ++ + VC TL+ + YA +F+ + N
Sbjct: 30 KTLISVLRSCKNIAHVPSIHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSN 89
Query: 63 PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCV 122
P+V L+ +MI + +G S + V L+ + + + PD Y +LKAC DL+V + +
Sbjct: 90 PNVYLYTAMIDGFVSSGRSADGVSLYHRMIHNSVLPDNYVITSVLKAC----DLKVCREI 145
Query: 123 HGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDV 182
H ++++ GF S+ + ++E+Y G++ + K+FDEM RD + +MI+ + + G +
Sbjct: 146 HAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFI 205
Query: 183 DKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPIC 242
+ L LF++++ + V W MI L ++ ++AL LF EM+ + +E T V VL C
Sbjct: 206 KEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLSAC 265
Query: 243 ARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSW 302
+ LGA+++G+W+HS+ E+ + VGNAL++ Y +CG ++ AR VF+ + K+V+S+
Sbjct: 266 SDLGALELGRWVHSFVENQRMELSNF-VGNALINMYSRCGDINEARRVFRVMRDKDVISY 324
Query: 303 NAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG 362
N MISGLA +G + + M+ +G PN+ T V +L C+H GL++ E+F SM
Sbjct: 325 NTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKR 384
Query: 363 LHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAE 422
+ ++ P +EHYGC+VD+LGR G + EAY I ++ I P+ + G+LLS+C+ HG++EL E
Sbjct: 385 VFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGE 444
Query: 423 HAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477
K L E +SG YVLLSN+YA G+W ++ +R MR++ ++K PG S IE
Sbjct: 445 KIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIE 499
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (879), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/438 (38%), Positives = 265/438 (60%), Gaps = 1/438 (0%)
Query: 40 FVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPD 99
F+ + + I YA +F++M + V+ +N+MI+ Y G +E KLF +K+ + PD
Sbjct: 152 FMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPD 211
Query: 100 EYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFD 159
E ++ AC G++R + ++ +I + + +V +Y G MD + F
Sbjct: 212 EMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFR 271
Query: 160 EMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRL 219
+MS R++ V M+ G+ K G +D +F + ++ +V W MIS+ +S EALR+
Sbjct: 272 KMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRV 331
Query: 220 FHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC 279
F EM + D ++ +V+ CA LG +D +W+HS +GL ++ S+ NAL++ Y
Sbjct: 332 FEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESEL-SINNALINMYA 390
Query: 280 KCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVG 339
KCG LD R+VF+++PR+NVVSW++MI+ L+ +G + L+ +M + V PN+ TFVG
Sbjct: 391 KCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVG 450
Query: 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIR 399
VL C+H+GLVE+ +++FASMT ++I P LEHYGCMVD+ GR+ +REA ++I SM +
Sbjct: 451 VLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVA 510
Query: 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLR 459
N IWGSL+S+CR HG +EL + A K ++ LEP + G VL+SNIYA RW+D +R
Sbjct: 511 SNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIR 570
Query: 460 MWMRENNVKKSPGQSLIE 477
M E NV K G S I+
Sbjct: 571 RVMEEKNVFKEKGLSRID 588
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (852), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 175/497 (35%), Positives = 266/497 (53%), Gaps = 38/497 (7%)
Query: 18 LTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSL 77
L +H+ + L ++ + + +L ++ A K+F+++ +V++ N MI++Y
Sbjct: 58 LRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVN 117
Query: 78 NGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSI 137
NG E VK+F + + PD YTF +LKAC G + +G+ +HG + G +
Sbjct: 118 NGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFV 177
Query: 138 RIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR---- 193
G+V +Y CG + + V DEMS RDV+ N ++ G+ + D L + REM
Sbjct: 178 GNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKI 237
Query: 194 ---------------------------------ERSVVSWNLMISSLGKSGRDSEALRLF 220
++S+VSWN+MI K+ EA+ L+
Sbjct: 238 SHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELY 297
Query: 221 HEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK 280
M FE D ++ +VLP C A+ +G+ IH Y E L ++ + NAL+D Y K
Sbjct: 298 SRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLL-LENALIDMYAK 356
Query: 281 CGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGV 340
CG L+ AR+VF+ + ++VVSW AMIS F+GRG V L+ ++ G+ P+ FV
Sbjct: 357 CGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTT 416
Query: 341 LTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRP 400
L C+HAGL+E+ R F MT + I P LEH CMVD+LGR+G V+EAY I+ MS+ P
Sbjct: 417 LAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEP 476
Query: 401 NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRM 460
N +WG+LL +CR H ++ A +L L P SG YVLLSNIYA+ GRW++ +R
Sbjct: 477 NERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRN 536
Query: 461 WMRENNVKKSPGQSLIE 477
M+ +KK+PG S +E
Sbjct: 537 IMKSKGLKKNPGASNVE 553
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 331 bits (849), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 174/479 (36%), Positives = 279/479 (58%), Gaps = 8/479 (1%)
Query: 6 LRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVC---GTLNE----IKYATKIFN 58
L LL ++ + L IH LR L + + +++C T N+ + YA IF+
Sbjct: 16 LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFS 75
Query: 59 QMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRV 118
Q++NP++ +FN +I+ +S + + + IWPD TF L+KA + + V
Sbjct: 76 QIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLV 135
Query: 119 GQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCK 178
G+ H +I+R GF+ + +V +Y +CG + ++F +M RDV+ M+ G+CK
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCK 195
Query: 179 KGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAV 238
G V+ +F EM R++ +W++MI+ K+ +A+ LF M+ + +E +V+V
Sbjct: 196 CGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSV 255
Query: 239 LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKN 298
+ CA LGA++ G+ + Y S + ++ +G ALVD + +CG ++ A +VF+ +P +
Sbjct: 256 ISSCAHLGALEFGERAYEYVVKSHMTVNLI-LGTALVDMFWRCGDIEKAIHVFEGLPETD 314
Query: 299 VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFA 358
+SW+++I GLA +G + + QMI+ G P TF VL+ C+H GLVEK E++
Sbjct: 315 SLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYE 374
Query: 359 SMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHV 418
+M H I P LEHYGC+VD+LGR+G + EA + I M ++PNA I G+LL +C+ + +
Sbjct: 375 NMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNT 434
Query: 419 ELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477
E+AE LI ++P +SG YVLLSNIYA G+WD E+LR M+E VKK PG SLIE
Sbjct: 435 EVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIE 493
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 327 bits (838), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 159/459 (34%), Positives = 273/459 (59%), Gaps = 2/459 (0%)
Query: 20 QIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNG 79
+++A + ++L+++ V + N I A ++F++ ++ L N+M Y G
Sbjct: 257 KVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQG 316
Query: 80 PSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRI 139
+ E + +F L+ + G+ PD + + +C + ++ G+ HG ++R+GFE + +I
Sbjct: 317 LTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICN 376
Query: 140 GVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVS 199
++++Y C + D ++FD MS++ V+ N ++ G+ + G+VD F M E+++VS
Sbjct: 377 ALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVS 436
Query: 200 WNLMISSLGKSGRDSEALRLFHEMRDQ-AFELDEATVVAVLPICARLGAVDIGQWIHSYA 258
WN +IS L + EA+ +F M+ Q D T++++ C LGA+D+ +WI+ Y
Sbjct: 437 WNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYI 496
Query: 259 ESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELG 318
E +G+ V +G LVD + +CG ++A ++F + ++V +W A I +A G E
Sbjct: 497 EKNGIQLDV-RLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERA 555
Query: 319 VELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378
+EL++ MI +G+ P+ FVG LT C+H GLV++ +E+F SM LH + P HYGCMVD
Sbjct: 556 IELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVD 615
Query: 379 VLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438
+LGR+G + EA LI M + PN IW SLL++CR G+VE+A +A +++ L P +G+
Sbjct: 616 LLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGS 675
Query: 439 YVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477
YVLLSN+YA GRW+D +R+ M+E ++K PG S I+
Sbjct: 676 YVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQ 714
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | ||||||
| 224123726 | 485 | predicted protein [Populus trichocarpa] | 0.997 | 0.981 | 0.706 | 0.0 | |
| 225450622 | 485 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.979 | 0.675 | 0.0 | |
| 296089760 | 459 | unnamed protein product [Vitis vinifera] | 0.941 | 0.978 | 0.642 | 1e-176 | |
| 449454143 | 484 | PREDICTED: pentatricopeptide repeat-cont | 0.993 | 0.979 | 0.603 | 1e-175 | |
| 186478293 | 484 | pentatricopeptide repeat-containing prot | 0.997 | 0.983 | 0.603 | 1e-174 | |
| 356533546 | 483 | PREDICTED: pentatricopeptide repeat-cont | 0.993 | 0.981 | 0.594 | 1e-171 | |
| 357441857 | 490 | Pentatricopeptide repeat-containing prot | 1.0 | 0.973 | 0.600 | 1e-170 | |
| 297849216 | 1014 | pentatricopeptide repeat-containing prot | 0.857 | 0.403 | 0.569 | 1e-140 | |
| 255542868 | 459 | pentatricopeptide repeat-containing prot | 0.540 | 0.562 | 0.674 | 1e-113 | |
| 357466605 | 568 | Pentatricopeptide repeat-containing prot | 0.966 | 0.811 | 0.412 | 1e-111 |
| >gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa] gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/477 (70%), Positives = 394/477 (82%), Gaps = 1/477 (0%)
Query: 1 IERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQM 60
IER ILRLLHGR TRT L +IHAHFLRH L+Q N IL+HFVS+CG+LN++ YA +IF Q
Sbjct: 8 IERNILRLLHGRETRTQLREIHAHFLRHGLNQLNQILSHFVSICGSLNKMAYANRIFKQT 67
Query: 61 RNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQ 120
+NP+++LFN+MIK YSLNGP EE +LF+ +KN GIWPDEYT APLLKAC +G L++G+
Sbjct: 68 QNPTIILFNAMIKGYSLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGK 127
Query: 121 CVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKG 180
C+H E++ GFE F +IRIGV+ELY+SCG M+D KVFDEM RDVIV NLMIHGFCK+G
Sbjct: 128 CMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRG 187
Query: 181 DVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLP 240
DVD GL LFR+MR+RSVVSWN+MIS L +S RDSEAL LFH+M D F+ DEATVV VLP
Sbjct: 188 DVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEATVVTVLP 247
Query: 241 ICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVV 300
ICARLG+VD+G+WIHSYA+SSGLYR V+VGNALVDFY K G+ +TAR VF E+PRKNV+
Sbjct: 248 ICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMPRKNVI 307
Query: 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASM 360
SWN +ISGLA NG GELGVEL E+M+ +GV PN ATFVGVL+CCAHAGL E+ REL ASM
Sbjct: 308 SWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCCAHAGLFERGRELLASM 367
Query: 361 TGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVE 419
H I P LEHYGCMVD+LGRSGCVREAYDLIR M PNAA+WGSLLS+CRTHG VE
Sbjct: 368 VEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRIMPGGAPNAALWGSLLSACRTHGDVE 427
Query: 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLI 476
LA AVKELI+LEPWNSGNYVLLSN+YAE RWD +R MRE NVKK+PGQS+I
Sbjct: 428 LAHLAVKELIDLEPWNSGNYVLLSNMYAEEERWDKVANVRGMMREKNVKKTPGQSVI 484
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/475 (67%), Positives = 390/475 (82%)
Query: 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMR 61
ER+ILR LHGR TRT L QIHAH LRH LHQSN IL+HF+SVCG L+++ YA +F+Q +
Sbjct: 9 ERRILRHLHGRKTRTQLPQIHAHILRHHLHQSNQILSHFISVCGALDKMGYANLVFHQTQ 68
Query: 62 NPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQC 121
NP++LLFNSMIK YSL GPSE + LF+ +KN GIWPDE+TFAPLLK+C G+ D R+G+
Sbjct: 69 NPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKG 128
Query: 122 VHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGD 181
VHG +I GFERF SIRIG+++LYTSCG+M+D KVFDEM RDVIV N+MI GFCK GD
Sbjct: 129 VHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEMLDRDVIVWNMMIRGFCKVGD 188
Query: 182 VDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPI 241
++ G LFR+MR+RSVVSWN MI+ L +SGRD EAL LF EM D FE D+ATVV +LP+
Sbjct: 189 IEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPV 248
Query: 242 CARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVS 301
CARLGAVD+G+WIHSYAESS L R +SVGN+LVDFYCKCGIL+TA VF E+P+KNVVS
Sbjct: 249 CARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVS 308
Query: 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMT 361
WNAMISGL FNG+GELG +L+E+MI KGV PN ATFVGVL+CCAHAGLVE+ R LF SMT
Sbjct: 309 WNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMT 368
Query: 362 GLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELA 421
H + P LEH+GCMVD+L R+GC+ EA DL+R+M +RPNA +WGSLLS+ RT G V+ A
Sbjct: 369 VDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVLWGSLLSAYRTIGDVKHA 428
Query: 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLI 476
E AVKELI LEPWNSGNYVLLSN+YAE G+WD+ E +R M+E N++K+PGQS++
Sbjct: 429 ECAVKELIELEPWNSGNYVLLSNVYAEDGKWDEVEKVRALMKEKNIRKNPGQSMV 483
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/475 (64%), Positives = 371/475 (78%), Gaps = 26/475 (5%)
Query: 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMR 61
ER+ILR LHGR TRT L QIHAH LRH LHQSN IL+HF+SVCG L+++ YA +F+Q +
Sbjct: 9 ERRILRHLHGRKTRTQLPQIHAHILRHHLHQSNQILSHFISVCGALDKMGYANLVFHQTQ 68
Query: 62 NPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQC 121
NP++LLFNSMIK YSL GPSE + LF+ +KN GIWPDE+TFAPLLK+C G+ D R+G+
Sbjct: 69 NPNLLLFNSMIKGYSLCGPSENSLLLFSQMKNRGIWPDEFTFAPLLKSCSGICDNRIGKG 128
Query: 122 VHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGD 181
VHG +I GFERF SIRIG+++LYTSCG+M+D KVFDEM
Sbjct: 129 VHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVFDEM-------------------- 168
Query: 182 VDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPI 241
L R+MR+RSVVSWN MI+ L +SGRD EAL LF EM D FE D+ATVV +LP+
Sbjct: 169 ------LDRDMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPV 222
Query: 242 CARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVS 301
CARLGAVD+G+WIHSYAESS L R +SVGN+LVDFYCKCGIL+TA VF E+P+KNVVS
Sbjct: 223 CARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQKNVVS 282
Query: 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMT 361
WNAMISGL FNG+GELG +L+E+MI KGV PN ATFVGVL+CCAHAGLVE+ R LF SMT
Sbjct: 283 WNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNLFTSMT 342
Query: 362 GLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELA 421
H + P LEH+GCMVD+L R+GC+ EA DL+R+M +RPNA +WGSLLS+ RT G V+ A
Sbjct: 343 VDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMRPNAVLWGSLLSAYRTIGDVKHA 402
Query: 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLI 476
E AVKELI LEPWNSGNYVLLSN+YAE G+WD+ E +R M+E N++K+PGQS++
Sbjct: 403 ECAVKELIELEPWNSGNYVLLSNVYAEDGKWDEVEKVRALMKEKNIRKNPGQSMV 457
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190-like [Cucumis sativus] gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 286/474 (60%), Positives = 370/474 (78%)
Query: 1 IERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQM 60
IER+ILRLLHG +RTHLTQIHAHFLRH LHQSN ILAHF+SVC + N I YA ++F+Q
Sbjct: 8 IERRILRLLHGHKSRTHLTQIHAHFLRHGLHQSNQILAHFISVCASFNRIAYADRLFSQS 67
Query: 61 RNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQ 120
NP++ LFNS+IKA+SL+ P + + LF+ +KN I PD+YTFAPLLK+C + + +GQ
Sbjct: 68 HNPNIFLFNSIIKAHSLSVPFHQSLLLFSSMKNHRIVPDQYTFAPLLKSCANLCEYSLGQ 127
Query: 121 CVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKG 180
CV E+ R GF FGSIRIGVVELY C +M+D K+FDEMSHRDV+V NLMI GFCK G
Sbjct: 128 CVISEVFRRGFYCFGSIRIGVVELYVCCEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTG 187
Query: 181 DVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLP 240
+VD GL LFR+M ERS+VSWN +IS L ++ RD EAL LF +M + F+ DE TVV +LP
Sbjct: 188 NVDFGLCLFRQMSERSLVSWNTIISCLAQNRRDVEALELFQQMEEHGFKPDEVTVVTMLP 247
Query: 241 ICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVV 300
+C+RLGA+++GQ IHSYA S G + +VGN+L+DFYCKCG ++ A N+F+++ K+VV
Sbjct: 248 VCSRLGALEVGQRIHSYASSKGNLVGITTVGNSLIDFYCKCGNIEKAYNIFQKMTCKSVV 307
Query: 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASM 360
SWN +I G A NG+GE ++L+ +M + + PN ATFV VLT C H+GL+EK RELF+SM
Sbjct: 308 SWNTIILGFALNGKGEFAIDLFMEMRKEYLKPNDATFVAVLTACVHSGLLEKGRELFSSM 367
Query: 361 TGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVEL 420
+ I P LEH+GCMVD+LGR GCV EA+ LI+SM ++PNA +WG++L +CRTHG+++L
Sbjct: 368 AEDYEIQPKLEHFGCMVDLLGRGGCVEEAHKLIKSMPMQPNATLWGAVLGACRTHGNLKL 427
Query: 421 AEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQS 474
AE AVKELI+LEPWNSGNYVLLSN+ AE GRW++ E +R WMRE +VKK+PGQS
Sbjct: 428 AEMAVKELISLEPWNSGNYVLLSNMLAEEGRWEEVENVRQWMREKSVKKAPGQS 481
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190 gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein homolog TM021B04.10 gb|2191192 from A. thaliana BAC gb|AF007271 [Arabidopsis thaliana] gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana] gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 288/477 (60%), Positives = 369/477 (77%), Gaps = 1/477 (0%)
Query: 1 IERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQM 60
IERK+LRLLHG NTRT L +IHAH LRH LH SNL+LAHF+S+CG+L+ YA ++F+ +
Sbjct: 3 IERKLLRLLHGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHI 62
Query: 61 RNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQ 120
+NP+VL+FN+MIK YSL GP E + F+ +K+ GIW DEYT+APLLK+C + DLR G+
Sbjct: 63 QNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGK 122
Query: 121 CVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKG 180
CVHGE+IR+GF R G IRIGVVELYTS G+M D KVFDEMS R+V+V NLMI GFC G
Sbjct: 123 CVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSG 182
Query: 181 DVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLP 240
DV++GL+LF++M ERS+VSWN MISSL K GRD EAL LF EM DQ F+ DEATVV VLP
Sbjct: 183 DVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLP 242
Query: 241 ICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVV 300
I A LG +D G+WIHS AESSGL++ ++VGNALVDFYCK G L+ A +F+++ R+NVV
Sbjct: 243 ISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVV 302
Query: 301 SWNAMISGLAFNGRGELGVELYEQMIAKG-VSPNKATFVGVLTCCAHAGLVEKARELFAS 359
SWN +ISG A NG+GE G++L++ MI +G V+PN+ATF+GVL CC++ G VE+ ELF
Sbjct: 303 SWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGL 362
Query: 360 MTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVE 419
M + EHYG MVD++ RSG + EA+ +++M + NAA+WGSLLS+CR+HG V+
Sbjct: 363 MMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVK 422
Query: 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLI 476
LAE A EL+ +EP NSGNYVLLSN+YAE GRW D E +R M++N ++KS GQS I
Sbjct: 423 LAEVAAMELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 282/474 (59%), Positives = 360/474 (75%)
Query: 1 IERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQM 60
IERKILRLLHG TR+HLT+IH HFLRH L QSN ILAHFVSVC +L + YAT++F
Sbjct: 7 IERKILRLLHGGKTRSHLTEIHGHFLRHGLQQSNQILAHFVSVCASLRRVPYATRLFAHT 66
Query: 61 RNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQ 120
NP++LLFN++IKA+SL+ P F+L+K I PDEYT APL K+ + +G
Sbjct: 67 HNPNILLFNAIIKAHSLHPPFHASFSFFSLMKTRAISPDEYTLAPLFKSASNLRYYVLGG 126
Query: 121 CVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKG 180
CVH ++R GF R S+R+ +E+Y SC +M D KVFDEM DV+V NLMI GFCK G
Sbjct: 127 CVHAHVVRLGFTRHASVRVAALEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMG 186
Query: 181 DVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLP 240
D++ G+ +F +M+ER+VVSWNLM+S L K+ ++ +AL LF+EM +Q FE D+A++V VLP
Sbjct: 187 DLETGMKVFGQMKERTVVSWNLMMSCLAKNNKEEKALELFNEMLEQGFEPDDASLVTVLP 246
Query: 241 ICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVV 300
+CARLGAVDIG+WIHSYA S G + ++VGN+LVDFYCKCG L A ++F ++ KNVV
Sbjct: 247 VCARLGAVDIGEWIHSYANSKGFLQDTINVGNSLVDFYCKCGNLQAAWSIFNDMASKNVV 306
Query: 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASM 360
SWNAMISGLA+NG GE+GV L+E+M+ G PN +TFVGVL CCAH GLV++ R+LFASM
Sbjct: 307 SWNAMISGLAYNGEGEVGVNLFEEMVHGGFEPNDSTFVGVLACCAHVGLVDRGRDLFASM 366
Query: 361 TGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVEL 420
+ + P LEHYGC+VD+LGR G VREA DLI SM ++P AA+WG+LLS+CRT+G E+
Sbjct: 367 SVKFKVSPKLEHYGCVVDLLGRCGHVREARDLITSMPLKPTAALWGALLSACRTYGDREI 426
Query: 421 AEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQS 474
AE+A KEL+ LEPWNSGNYVLLSN+YAE GRWD+ E +R+ MR VKK PGQS
Sbjct: 427 AENAAKELVRLEPWNSGNYVLLSNVYAEEGRWDEVEKVRVLMRGGGVKKVPGQS 480
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust.
Identities = 287/478 (60%), Positives = 364/478 (76%), Gaps = 1/478 (0%)
Query: 1 IERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQM 60
IE KIL LLH T+THL QIHAHFLRH LH SN IL+HFVSVC +L++I YAT IFN
Sbjct: 8 IESKILHLLHNTKTQTHLPQIHAHFLRHGLHHSNQILSHFVSVCTSLHQIPYATTIFNHT 67
Query: 61 RNPSVLLFNSMIKAYSLNGPSEEPVKLFALLK-NLGIWPDEYTFAPLLKACLGVGDLRVG 119
+P++LLFNS+IKA+S P + F L+K I PD +TF PLLKA + D +G
Sbjct: 68 HHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSYLRDYDLG 127
Query: 120 QCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKK 179
QC+H + GF R + IG++E+Y++CG+M+D KVFDEM HR+V+V N+MI+GFCK
Sbjct: 128 QCLHAHVTALGFYRHSPVEIGLLEVYSNCGKMEDANKVFDEMLHREVVVWNIMINGFCKM 187
Query: 180 GDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVL 239
GD++ GL LF+ M +RSVVSWNLMIS L + +D EA +F EM +Q FE D+AT+V VL
Sbjct: 188 GDLEIGLKLFKRMGQRSVVSWNLMISCLAQRKKDGEAFGIFREMLEQGFEPDDATLVTVL 247
Query: 240 PICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV 299
P+CARLG VD G+WIHSYA+ GL RKV+SVGN+LVDFYCKCG L+ A VF E+ +KNV
Sbjct: 248 PVCARLGDVDAGEWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVFNEMTKKNV 307
Query: 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFAS 359
VSWNAMISGL NG+GELGVEL+E+M KGV+P+ +TFVGVL CCAHAG V+K RE+F S
Sbjct: 308 VSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVDKGREIFDS 367
Query: 360 MTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVE 419
MT + P LEHYGC+VD+LGR G V+EAYDLIR+M + PNAA+WG+LLS+CRTHG E
Sbjct: 368 MTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNMPLMPNAALWGALLSACRTHGDRE 427
Query: 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477
+AE A KEL+ LEP NSGNYVLLSN+YAE +W++ E +R+ M+ +KK+PGQS ++
Sbjct: 428 VAEIAAKELVRLEPGNSGNYVLLSNVYAEERKWNEVEKVRVLMQGVGIKKNPGQSALQ 485
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 239/420 (56%), Positives = 309/420 (73%), Gaps = 11/420 (2%)
Query: 66 LLFNSMIKAYSLN--------GPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLR 117
L+F M+K N GP + + F+ +K+ GIW DEYT+APLLK+C + DLR
Sbjct: 584 LVFKQMLKWLPANQRHLHMAAGP--KSLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLR 641
Query: 118 VGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFC 177
G+CVHGE+IR+GF R G +RIGVVELYTS G+M D KVFDEM R+V+V NLM+ GFC
Sbjct: 642 FGKCVHGEVIRTGFHRLGKVRIGVVELYTSGGRMGDAQKVFDEMPERNVVVWNLMVRGFC 701
Query: 178 KKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVA 237
GDV +GL F++M ERS+VSWN MISSL K GRD EAL LF EM DQ F+ DEATVV
Sbjct: 702 DSGDVQRGLSFFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVT 761
Query: 238 VLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRK 297
+LPI A LG +D G+WIHS AES+GL + ++VGNALVDFYCK G L+ A +F+++ R+
Sbjct: 762 MLPISASLGVLDTGKWIHSTAESNGLIKDFITVGNALVDFYCKSGDLEAATAIFRKMQRR 821
Query: 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKG-VSPNKATFVGVLTCCAHAGLVEKAREL 356
NVVSWN MISG A NG+GE G++L++ MI +G V+PN+ATF+GVL CC++ G VE+ EL
Sbjct: 822 NVVSWNTMISGSAVNGKGESGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEEL 881
Query: 357 FASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHG 416
F M + P EHYG MVD++ RSG +REA++ +R+M + NAA+WGSLLS+CR+HG
Sbjct: 882 FGLMMERFKLEPRTEHYGAMVDLMSRSGRIREAFEFLRNMPVNANAAMWGSLLSACRSHG 941
Query: 417 HVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLI 476
V+LAE A EL+ +EP NSGNYVLLSN+YAE GRW D E +R M++N ++K+ GQS I
Sbjct: 942 DVKLAELAAMELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNCLRKTTGQSTI 1001
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542868|ref|XP_002512497.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548458|gb|EEF49949.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 197/292 (67%), Positives = 235/292 (80%)
Query: 1 IERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQM 60
IERKIL+LLHG NTRT L QIHAHFLRH L Q N ILAHF+SVCG+ N++ YA ++F Q
Sbjct: 166 IERKILKLLHGHNTRTQLRQIHAHFLRHGLDQLNHILAHFISVCGSENKMPYANRVFLQS 225
Query: 61 RNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQ 120
NP++L FN+M+K YSL GP EE + F+ +K GIWPDEYTFAPLLKAC + DL++GQ
Sbjct: 226 VNPNILPFNAMVKGYSLCGPFEESLSFFSSMKRRGIWPDEYTFAPLLKACSSLYDLKLGQ 285
Query: 121 CVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKG 180
C+H ++I GFE F SI+IGVVELY +CG ++D KVFDEM RD IV NLMI G+C++G
Sbjct: 286 CIHKDVIMIGFECFCSIQIGVVELYANCGLLEDSKKVFDEMRERDSIVWNLMIRGYCRRG 345
Query: 181 DVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLP 240
DV+ GLYLFR+M ERSVVSWN+MIS L +SGRDSEALRLFHEM+D+ F+ DEATVV VLP
Sbjct: 346 DVNMGLYLFRKMSERSVVSWNIMISCLAQSGRDSEALRLFHEMQDEGFKPDEATVVTVLP 405
Query: 241 ICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFK 292
ICARL AV +GQWI SYAES+GLY VSVGNALVDFY KCG+L+TAR K
Sbjct: 406 ICARLEAVSVGQWIQSYAESTGLYGDFVSVGNALVDFYSKCGMLETARRDLK 457
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/465 (41%), Positives = 301/465 (64%), Gaps = 4/465 (0%)
Query: 16 THLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAY 75
T L +IHAH ++ L QSN ++ + C L + YAT +F Q+ +P++ +N++I+ Y
Sbjct: 24 TQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTY 83
Query: 76 SLNGPSEEPVKLFALL---KNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFE 132
+ N + +F + ++PD++TF ++K+C G+ R+G VHG + + G +
Sbjct: 84 AHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGAD 143
Query: 133 RFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREM 192
++++YT G + + KVF+EMSHRDVI N +I G+ K G ++ LF +M
Sbjct: 144 FHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDM 203
Query: 193 RERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQ 252
R++VSW MI+ G+ G +AL +F EM+ E DE +++AVLP CA+LGA+++G+
Sbjct: 204 PVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGK 263
Query: 253 WIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFN 312
WIH YA+ +G RK + NAL++ Y KCG +D A N+F ++ K+V+SW+ MI GLA +
Sbjct: 264 WIHMYADKNGFLRKT-GICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANH 322
Query: 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEH 372
G+G ++L+E+M V+PN+ TF+GVL C+H GL ++ + F M+ + I P +EH
Sbjct: 323 GKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEH 382
Query: 373 YGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432
YGC++D+LGRSGC+ +A D I M I+P++ IW SLLSSCR H ++++A AVK+L+ LE
Sbjct: 383 YGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELE 442
Query: 433 PWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477
P SGNYVLL+N+YAE G+W+D +R +R +KK+PG S IE
Sbjct: 443 PEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIE 487
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | ||||||
| TAIR|locus:2195296 | 484 | AT1G09190 "AT1G09190" [Arabido | 0.997 | 0.983 | 0.603 | 3.6e-160 | |
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.995 | 0.889 | 0.386 | 9.7e-96 | |
| TAIR|locus:2161018 | 530 | AT5G56310 "AT5G56310" [Arabido | 0.979 | 0.881 | 0.405 | 1.6e-95 | |
| TAIR|locus:2159602 | 511 | AT5G08510 "AT5G08510" [Arabido | 0.947 | 0.884 | 0.387 | 2.8e-89 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.916 | 0.605 | 0.385 | 4.7e-87 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.979 | 0.750 | 0.372 | 4.4e-84 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.897 | 0.662 | 0.369 | 5.6e-84 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.949 | 0.665 | 0.344 | 1.5e-81 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.960 | 0.738 | 0.367 | 1.5e-81 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.985 | 0.674 | 0.348 | 2e-81 |
| TAIR|locus:2195296 AT1G09190 "AT1G09190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1560 (554.2 bits), Expect = 3.6e-160, P = 3.6e-160
Identities = 288/477 (60%), Positives = 369/477 (77%)
Query: 1 IERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQM 60
IERK+LRLLHG NTRT L +IHAH LRH LH SNL+LAHF+S+CG+L+ YA ++F+ +
Sbjct: 3 IERKLLRLLHGHNTRTRLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYANRVFSHI 62
Query: 61 RNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQ 120
+NP+VL+FN+MIK YSL GP E + F+ +K+ GIW DEYT+APLLK+C + DLR G+
Sbjct: 63 QNPNVLVFNAMIKCYSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGK 122
Query: 121 CVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKG 180
CVHGE+IR+GF R G IRIGVVELYTS G+M D KVFDEMS R+V+V NLMI GFC G
Sbjct: 123 CVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSG 182
Query: 181 DVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLP 240
DV++GL+LF++M ERS+VSWN MISSL K GRD EAL LF EM DQ F+ DEATVV VLP
Sbjct: 183 DVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLP 242
Query: 241 ICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVV 300
I A LG +D G+WIHS AESSGL++ ++VGNALVDFYCK G L+ A +F+++ R+NVV
Sbjct: 243 ISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVV 302
Query: 301 SWNAMISGLAFNGRGELGVELYEQMIAKG-VSPNKATFVGVLTCCAHAGLVEKARELFAS 359
SWN +ISG A NG+GE G++L++ MI +G V+PN+ATF+GVL CC++ G VE+ ELF
Sbjct: 303 SWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNEATFLGVLACCSYTGQVERGEELFGL 362
Query: 360 MTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVE 419
M + EHYG MVD++ RSG + EA+ +++M + NAA+WGSLLS+CR+HG V+
Sbjct: 363 MMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLKNMPVNANAAMWGSLLSACRSHGDVK 422
Query: 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLI 476
LAE A EL+ +EP NSGNYVLLSN+YAE GRW D E +R M++N ++KS GQS I
Sbjct: 423 LAEVAAMELVKIEPGNSGNYVLLSNLYAEEGRWQDVEKVRTLMKKNRLRKSTGQSTI 479
|
|
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 185/479 (38%), Positives = 297/479 (62%)
Query: 1 IERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQM 60
+E + L +R +I+A + H L QS+ ++ V C + ++ YAT++FNQ+
Sbjct: 9 VENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQV 68
Query: 61 RNPSVLLFNSMIKAYSLNGPSEEPVKLFA-LLKNLGIWPDEYTFAPLLKACLGVGDLRVG 119
NP+V L+NS+I+AY+ N + ++++ LL+ PD +TF + K+C +G +G
Sbjct: 69 SNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLG 128
Query: 120 QCVHGEIIRSGFERFGSI-RIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCK 178
+ VHG + + G RF + ++++Y + D KVFDEM RDVI N ++ G+ +
Sbjct: 129 KQVHGHLCKFG-PRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYAR 187
Query: 179 KGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAV 238
G + K LF M ++++VSW MIS G EA+ F EM+ E DE ++++V
Sbjct: 188 LGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISV 247
Query: 239 LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKN 298
LP CA+LG++++G+WIH YAE G + K V NAL++ Y KCG++ A +F ++ K+
Sbjct: 248 LPSCAQLGSLELGKWIHLYAERRG-FLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKD 306
Query: 299 VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFA 358
V+SW+ MISG A++G +E + +M V PN TF+G+L+ C+H G+ ++ F
Sbjct: 307 VISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFD 366
Query: 359 SMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHV 418
M + I P +EHYGC++DVL R+G + A ++ ++M ++P++ IWGSLLSSCRT G++
Sbjct: 367 MMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNL 426
Query: 419 ELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477
++A A+ L+ LEP + GNYVLL+NIYA+ G+W+D LR +R N+KK+PG SLIE
Sbjct: 427 DVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIE 485
|
|
| TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
Identities = 192/474 (40%), Positives = 295/474 (62%)
Query: 9 LHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLF 68
+HG N +T L Q H + + L++ NL +A F+ C ++YA +F P+ L
Sbjct: 23 IHGNNLKT-LKQSHCYMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLH 81
Query: 69 NSMIKAYSL-NGPSEEPVKL--FALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGE 125
N+MI+A SL + P+ + + + L L PD +TF +LK + V D+ G+ +HG+
Sbjct: 82 NTMIRALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQ 141
Query: 126 IIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKG 185
++ GF+ + G++++Y SCG + D K+FDEM +DV V N ++ G+ K G++D+
Sbjct: 142 VVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEA 201
Query: 186 LYLFREMR--ERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICA 243
L M R+ VSW +IS KSGR SEA+ +F M + E DE T++AVL CA
Sbjct: 202 RSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACA 261
Query: 244 RLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWN 303
LG++++G+ I SY + G+ R VS+ NA++D Y K G + A +VF+ + +NVV+W
Sbjct: 262 DLGSLELGERICSYVDHRGMNR-AVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWT 320
Query: 304 AMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGL 363
+I+GLA +G G + ++ +M+ GV PN TF+ +L+ C+H G V+ + LF SM
Sbjct: 321 TIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSK 380
Query: 364 HSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEH 423
+ I PN+EHYGCM+D+LGR+G +REA ++I+SM + NAAIWGSLL++ H +EL E
Sbjct: 381 YGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGER 440
Query: 424 AVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477
A+ ELI LEP NSGNY+LL+N+Y+ GRWD++ +R M+ VKK G+S IE
Sbjct: 441 ALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIE 494
|
|
| TAIR|locus:2159602 AT5G08510 "AT5G08510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 178/459 (38%), Positives = 279/459 (60%)
Query: 18 LTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSL 77
+ Q+HAH LR + ++ +L + + + YA K+F+ +N L+N +I+AY +
Sbjct: 4 IKQLHAHCLRTGVDETKDLLQRLLLI----PNLVYARKLFDHHQNSCTFLYNKLIQAYYV 59
Query: 78 NGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSI 137
+ E + L+ LL G+ P +TF + A R + +H + RSGFE
Sbjct: 60 HHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFC 119
Query: 138 RIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSV 197
++ Y G + +VFDEMS RDV V N MI G+ ++GD+ + LF M ++V
Sbjct: 120 CTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNV 179
Query: 198 VSWNLMISSLGKSGRDSEALRLFHEM-RDQAFELDEATVVAVLPICARLGAVDIGQWIHS 256
SW +IS ++G SEAL++F M +D++ + + TVV+VLP CA LG ++IG+ +
Sbjct: 180 TSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEG 239
Query: 257 YAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP-RKNVVSWNAMISGLAFNGRG 315
YA +G + + V NA ++ Y KCG++D A+ +F+E+ ++N+ SWN+MI LA +G+
Sbjct: 240 YARENGFFDNIY-VCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKH 298
Query: 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGC 375
+ + L+ QM+ +G P+ TFVG+L C H G+V K +ELF SM +H I P LEHYGC
Sbjct: 299 DEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGC 358
Query: 376 MVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435
M+D+LGR G ++EAYDLI++M ++P+A +WG+LL +C HG+VE+AE A + L LEP N
Sbjct: 359 MIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTN 418
Query: 436 SGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQS 474
GN V++SNIYA +WD +R M++ + K+ G S
Sbjct: 419 PGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYS 457
|
|
| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
Identities = 169/438 (38%), Positives = 265/438 (60%)
Query: 40 FVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPD 99
F+ + + I YA +F++M + V+ +N+MI+ Y G +E KLF +K+ + PD
Sbjct: 152 FMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPD 211
Query: 100 EYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFD 159
E ++ AC G++R + ++ +I + + +V +Y G MD + F
Sbjct: 212 EMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFR 271
Query: 160 EMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRL 219
+MS R++ V M+ G+ K G +D +F + ++ +V W MIS+ +S EALR+
Sbjct: 272 KMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRV 331
Query: 220 FHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC 279
F EM + D ++ +V+ CA LG +D +W+HS +GL ++ S+ NAL++ Y
Sbjct: 332 FEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESEL-SINNALINMYA 390
Query: 280 KCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVG 339
KCG LD R+VF+++PR+NVVSW++MI+ L+ +G + L+ +M + V PN+ TFVG
Sbjct: 391 KCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVG 450
Query: 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIR 399
VL C+H+GLVE+ +++FASMT ++I P LEHYGCMVD+ GR+ +REA ++I SM +
Sbjct: 451 VLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVA 510
Query: 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLR 459
N IWGSL+S+CR HG +EL + A K ++ LEP + G VL+SNIYA RW+D +R
Sbjct: 511 SNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIR 570
Query: 460 MWMRENNVKKSPGQSLIE 477
M E NV K G S I+
Sbjct: 571 RVMEEKNVFKEKGLSRID 588
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 180/483 (37%), Positives = 284/483 (58%)
Query: 6 LRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVC---GTLNE----IKYATKIFN 58
L LL ++ + L IH LR L + + +++C T N+ + YA IF+
Sbjct: 16 LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFS 75
Query: 59 QMRNPSVLLFNSMIKAYSLNGPSEEPVKLFA----LLKNLGIWPDEYTFAPLLKACLGVG 114
Q++NP++ +FN +I+ +S EP K F +LK+ IWPD TF L+KA +
Sbjct: 76 QIQNPNLFVFNLLIRCFSTGA---EPSKAFGFYTQMLKSR-IWPDNITFPFLIKASSEME 131
Query: 115 DLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIH 174
+ VG+ H +I+R GF+ + +V +Y +CG + ++F +M RDV+ M+
Sbjct: 132 CVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVA 191
Query: 175 GFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEAT 234
G+CK G V+ +F EM R++ +W++MI+ K+ +A+ LF M+ + +E
Sbjct: 192 GYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETV 251
Query: 235 VVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEI 294
+V+V+ CA LGA++ G+ + Y S + ++ +G ALVD + +CG ++ A +VF+ +
Sbjct: 252 MVSVISSCAHLGALEFGERAYEYVVKSHMTVNLI-LGTALVDMFWRCGDIEKAIHVFEGL 310
Query: 295 PRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAR 354
P + +SW+++I GLA +G + + QMI+ G P TF VL+ C+H GLVEK
Sbjct: 311 PETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGL 370
Query: 355 ELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRT 414
E++ +M H I P LEHYGC+VD+LGR+G + EA + I M ++PNA I G+LL +C+
Sbjct: 371 EIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKI 430
Query: 415 HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQS 474
+ + E+AE LI ++P +SG YVLLSNIYA G+WD E+LR M+E VKK PG S
Sbjct: 431 YKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWS 490
Query: 475 LIE 477
LIE
Sbjct: 491 LIE 493
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 165/446 (36%), Positives = 272/446 (60%)
Query: 49 EIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKL---FALLKNLGIWPDEYTFAP 105
++ YA KIFNQM + +N++I+ +S + + + + + ++ + + P+ +TF
Sbjct: 74 DLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPS 133
Query: 106 LLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDG----------- 154
+LKAC G ++ G+ +HG ++ GF + +V +Y CG M D
Sbjct: 134 VLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEK 193
Query: 155 -MKVFDEMSHRD--VIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSG 211
M V + RD +++ N+MI G+ + GD LF +MR+RSVVSWN MIS +G
Sbjct: 194 DMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNG 253
Query: 212 RDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVG 271
+A+ +F EM+ + T+V+VLP +RLG++++G+W+H YAE SG+ V +G
Sbjct: 254 FFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV-LG 312
Query: 272 NALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVS 331
+AL+D Y KCGI++ A +VF+ +PR+NV++W+AMI+G A +G+ ++ + +M GV
Sbjct: 313 SALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 372
Query: 332 PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYD 391
P+ ++ +LT C+H GLVE+ R F+ M + + P +EHYGCMVD+LGRSG + EA +
Sbjct: 373 PSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEE 432
Query: 392 LIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451
I +M I+P+ IW +LL +CR G+VE+ + L+++ P +SG YV LSN+YA G
Sbjct: 433 FILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGN 492
Query: 452 WDDAETLRMWMRENNVKKSPGQSLIE 477
W + +R+ M+E +++K PG SLI+
Sbjct: 493 WSEVSEMRLRMKEKDIRKDPGCSLID 518
|
|
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
Identities = 159/461 (34%), Positives = 271/461 (58%)
Query: 17 HLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYS 76
H+ ++ + H +H +++ H + CG +++ A K+F++ ++ +N +I Y
Sbjct: 181 HVLKLRLELVSH-VHNASI---HMFASCG---DMENARKVFDESPVRDLVSWNCLINGYK 233
Query: 77 LNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGS 136
G +E+ + ++ L+++ G+ PD+ T L+ +C +GDL G+ + + +G
Sbjct: 234 KIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIP 293
Query: 137 IRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERS 196
+ ++++++ CG + + ++FD + R ++ MI G+ + G +D LF +M E+
Sbjct: 294 LVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKD 353
Query: 197 VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHS 256
VV WN MI ++ R +AL LF EM+ + DE T++ L C++LGA+D+G WIH
Sbjct: 354 VVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHR 413
Query: 257 YAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGE 316
Y E L V ++G +LVD Y KCG + A +VF I +N +++ A+I GLA +G
Sbjct: 414 YIEKYSLSLNV-ALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDAS 472
Query: 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCM 376
+ + +MI G++P++ TF+G+L+ C H G+++ R+ F+ M ++ P L+HY M
Sbjct: 473 TAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIM 532
Query: 377 VDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436
VD+LGR+G + EA L+ SM + +AA+WG+LL CR HG+VEL E A K+L+ L+P +S
Sbjct: 533 VDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDS 592
Query: 437 GNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477
G YVLL +Y E W+DA+ R M E V+K PG S IE
Sbjct: 593 GIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIE 633
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 818 (293.0 bits), Expect = 1.5e-81, P = 1.5e-81
Identities = 170/462 (36%), Positives = 261/462 (56%)
Query: 18 LTQIHAHFLRHKLHQSNLILAHFVSVC--GTLNE-IKYATKIFNQMRNPSVLLFNSMIKA 74
L QIHA L+ L Q + + F+S C T ++ + YA +F+ P L+N MI+
Sbjct: 30 LKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRG 89
Query: 75 YSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERF 134
+S + E + L+ + + YTF LLKAC + +H +I + G+E
Sbjct: 90 FSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYEND 149
Query: 135 GSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE 194
++ Y G +FD + D + N +I G+ K G +D L LFR+M E
Sbjct: 150 VYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAE 209
Query: 195 RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWI 254
++ +SW MIS ++ + EAL+LFHEM++ E D ++ L CA+LGA++ G+WI
Sbjct: 210 KNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWI 269
Query: 255 HSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGR 314
HSY + + V +G L+D Y KCG ++ A VFK I +K+V +W A+ISG A++G
Sbjct: 270 HSYLNKTRIRMDSV-LGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGH 328
Query: 315 GELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYG 374
G + + +M G+ PN TF VLT C++ GLVE+ + +F SM +++ P +EHYG
Sbjct: 329 GREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYG 388
Query: 375 CMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434
C+VD+LGR+G + EA I+ M ++PNA IWG+LL +CR H ++EL E + LI ++P+
Sbjct: 389 CIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPY 448
Query: 435 NSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLI 476
+ G YV +NI+A +WD A R M+E V K PG S I
Sbjct: 449 HGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTI 490
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 168/482 (34%), Positives = 271/482 (56%)
Query: 5 ILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLI---LAHFVSVCGTLNEIKYATKIFNQMR 61
+L G N Q+H+ + I L S CG +N+ A ++F++M
Sbjct: 158 VLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVND---AQRVFDEMG 214
Query: 62 NPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQC 121
+ +V+ +NS+I + NGP+ E + +F ++ + PDE T A ++ AC + ++VGQ
Sbjct: 215 DRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQE 274
Query: 122 VHGEIIRSGFERFGSIRIGV-VELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKG 180
VHG ++++ R I V++Y C ++ + +FD M R+VI MI G+
Sbjct: 275 VHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAA 334
Query: 181 DVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLP 240
+F +M ER+VVSWN +I+ ++G + EAL LF ++ ++ + +L
Sbjct: 335 STKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILK 394
Query: 241 ICARLGAVDIGQWIHSYAESSGLYRKV-----VSVGNALVDFYCKCGILDTARNVFKEIP 295
CA L + +G H + G + + VGN+L+D Y KCG ++ VF+++
Sbjct: 395 ACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMM 454
Query: 296 RKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARE 355
++ VSWNAMI G A NG G +EL+ +M+ G P+ T +GVL+ C HAG VE+ R
Sbjct: 455 ERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRH 514
Query: 356 LFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTH 415
F+SMT + P +HY CMVD+LGR+G + EA +I M ++P++ IWGSLL++C+ H
Sbjct: 515 YFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVH 574
Query: 416 GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSL 475
++ L ++ ++L+ +EP NSG YVLLSN+YAE G+W+D +R MR+ V K PG S
Sbjct: 575 RNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSW 634
Query: 476 IE 477
I+
Sbjct: 635 IK 636
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O80488 | PPR23_ARATH | No assigned EC number | 0.6037 | 0.9979 | 0.9834 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 477 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-95 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-93 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-53 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-46 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-39 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-33 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 305 bits (783), Expect = 4e-95
Identities = 157/444 (35%), Positives = 249/444 (56%), Gaps = 41/444 (9%)
Query: 41 VSVCGTLNEI-------KYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKN 93
VSVC +L ++ A K+F++M + + +MI Y NG ++ ++ +AL++
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 94 LGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDD 153
+ PDE T A +L AC +GDL VG +H R G +
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY------------------- 423
Query: 154 GMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRD 213
V+V N +I + K +DK L +F + E+ V+SW +I+ L + R
Sbjct: 424 ------------VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRC 471
Query: 214 SEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA 273
EAL F +M + + T++A L CAR+GA+ G+ IH++ +G+ + NA
Sbjct: 472 FEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF-LPNA 529
Query: 274 LVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN 333
L+D Y +CG ++ A N F K+VVSWN +++G +G+G + VEL+ +M+ GV+P+
Sbjct: 530 LLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588
Query: 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLI 393
+ TF+ +L C+ +G+V + E F SM +SI PNL+HY C+VD+LGR+G + EAY+ I
Sbjct: 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 394 RSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWD 453
M I P+ A+WG+LL++CR H HVEL E A + + L+P + G Y+LL N+YA+ G+WD
Sbjct: 649 NKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWD 708
Query: 454 DAETLRMWMRENNVKKSPGQSLIE 477
+ +R MREN + PG S +E
Sbjct: 709 EVARVRKTMRENGLTVDPGCSWVE 732
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 296 bits (759), Expect = 5e-93
Identities = 140/420 (33%), Positives = 226/420 (53%), Gaps = 39/420 (9%)
Query: 44 CGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTF 103
CG L + A ++F++M ++ + ++I G E LF + G + TF
Sbjct: 171 CGMLID---ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTF 227
Query: 104 APLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH 163
+L+A G+G R GQ +H ++++G + ++++Y+ CG ++D VFD M
Sbjct: 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP- 286
Query: 164 RDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEM 223
E++ V+WN M++ G EAL L++EM
Sbjct: 287 ------------------------------EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316
Query: 224 RDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI 283
RD +D+ T ++ I +RL ++ + H+ +G +V+ ALVD Y K G
Sbjct: 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA-NTALVDLYSKWGR 375
Query: 284 LDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTC 343
++ ARNVF +PRKN++SWNA+I+G +GRG VE++E+MIA+GV+PN TF+ VL+
Sbjct: 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAA 403
C ++GL E+ E+F SM+ H I P HY CM+++LGR G + EAY +IR +P
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVN 495
Query: 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDA----ETLR 459
+W +LL++CR H ++EL A ++L + P NYV+L N+Y GR +A ETL+
Sbjct: 496 MWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK 555
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 191 bits (486), Expect = 5e-53
Identities = 115/406 (28%), Positives = 189/406 (46%), Gaps = 44/406 (10%)
Query: 20 QIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNG 79
++HAH +R ++ +++ ++ A +F++M + +N+MI Y NG
Sbjct: 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENG 267
Query: 80 PSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRI 139
E ++LF ++ L + PD T ++ AC +GD R+G+ +HG ++++GF S+
Sbjct: 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327
Query: 140 GVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVS 199
++++Y S G + KVF M +D VS
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETKDA-------------------------------VS 356
Query: 200 WNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAE 259
W MIS K+G +AL + M DE T+ +VL CA LG +D+G +H AE
Sbjct: 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416
Query: 260 SSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGV 319
GL VV V NAL++ Y KC +D A VF IP K+V+SW ++I+GL N R +
Sbjct: 417 RKGLISYVV-VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475
Query: 320 ELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASM----TGLHSIVPNLEHYGC 375
+ QM+ + PN T + L+ CA G + +E+ A + G +PN
Sbjct: 476 IFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----A 529
Query: 376 MVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELA 421
++D+ R G + A++ S + W LL+ HG +A
Sbjct: 530 LLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMA 573
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 3e-46
Identities = 109/384 (28%), Positives = 177/384 (46%), Gaps = 46/384 (11%)
Query: 34 NLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKN 93
N +L+ FV E+ +A +F +M + +N ++ Y+ G +E + L+ +
Sbjct: 125 NAMLSMFVR----FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 94 LGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDD 153
G+ PD YTF +L+ C G+ DL G+ VH ++R GFE + ++ +Y CG +
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 154 GMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRD 213
VFD M RD I SWN MIS ++G
Sbjct: 241 ARLVFDRMPRRDCI-------------------------------SWNAMISGYFENGEC 269
Query: 214 SEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA 273
E L LF MR+ + + D T+ +V+ C LG +G+ +H Y +G + VSV N+
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNS 328
Query: 274 LVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN 333
L+ Y G A VF + K+ VSW AMISG NG + +E Y M VSP+
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
Query: 334 KATFVGVLTCCAHAGLVEKAREL--FASMTGLHS--IVPNLEHYGCMVDVLGRSGCVREA 389
+ T VL+ CA G ++ +L A GL S +V N ++++ + C+ +A
Sbjct: 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN-----ALIEMYSKCKCIDKA 443
Query: 390 YDLIRSMSIRPNAAIWGSLLSSCR 413
++ ++ + W S+++ R
Sbjct: 444 LEVFHNIP-EKDVISWTSIIAGLR 466
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 1e-39
Identities = 108/389 (27%), Positives = 177/389 (45%), Gaps = 46/389 (11%)
Query: 47 LNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLK-NLGIWPDEYTFAP 105
++E K A Q+R V L S I+ G E ++LF +L+ T+
Sbjct: 70 VSESKDARLDDTQIRKSGVSLC-SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDA 128
Query: 106 LLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRD 165
L++AC+ + +R + V+ + SGFE + V+ ++ CG + D ++FDEM
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP--- 185
Query: 166 VIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRD 225
ER++ SW +I L +G EA LF EM +
Sbjct: 186 ----------------------------ERNLASWGTIIGGLVDAGNYREAFALFREMWE 217
Query: 226 QAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILD 285
+ + T V +L A LG+ GQ +H +G+ V AL+D Y KCG ++
Sbjct: 218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF-VSCALIDMYSKCGDIE 276
Query: 286 TARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA 345
AR VF +P K V+WN+M++G A +G E + LY +M GVS ++ TF ++ +
Sbjct: 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336
Query: 346 HAGLVEKARELFASM--TGLHS-IVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNA 402
L+E A++ A + TG IV N +VD+ + G + +A ++ M + N
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANT----ALVDLYSKWGRMEDARNVFDRMPRK-NL 391
Query: 403 AIWGSLLSSCRTHGH----VELAEHAVKE 427
W +L++ HG VE+ E + E
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAE 420
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (335), Expect = 3e-33
Identities = 97/373 (26%), Positives = 162/373 (43%), Gaps = 48/373 (12%)
Query: 69 NSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIR 128
NS ++A +G E+ +KL ++ L + DE + L + C E R
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLC--------------EWKR 100
Query: 129 SGFERFGSIRIGVVELYTSCGQMDDGMKVF----DEMSHRDVIVRNLMIHGFCKKGDVDK 184
+ +++G +V V + N M+ F + G++
Sbjct: 101 A---------------------VEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVH 139
Query: 185 GLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICAR 244
Y+F +M ER + SWN+++ K+G EAL L+H M D T VL C
Sbjct: 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGG 199
Query: 245 LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNA 304
+ + G+ +H++ G + V V NAL+ Y KCG + +AR VF +PR++ +SWNA
Sbjct: 200 IPDLARGREVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNA 258
Query: 305 MISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAREL--FASMTG 362
MISG NG G+EL+ M V P+ T V++ C G RE+ + TG
Sbjct: 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318
Query: 363 LHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELA- 421
++ ++ + G EA + M + +A W +++S +G + A
Sbjct: 319 F---AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNGLPDKAL 374
Query: 422 -EHAVKELINLEP 433
+A+ E N+ P
Sbjct: 375 ETYALMEQDNVSP 387
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 4e-18
Identities = 79/303 (26%), Positives = 125/303 (41%), Gaps = 51/303 (16%)
Query: 201 NLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAES 260
N + +L G+ +AL+L M++ +DE VA+ +C AV+ G + S A S
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 261 SGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVE 320
S V +GNA++ + + G L A VF ++P +++ SWN ++ G A G + +
Sbjct: 115 S-HPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 321 LYEQMIAKGVSPNKATFVGVLTCCA-----------HA---------------------- 347
LY +M+ GV P+ TF VL C HA
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233
Query: 348 --GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIW 405
G V AR +F M I N G + G E + +R +S+ P+
Sbjct: 234 KCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL--ELFFTMRELSVDPDLMTI 291
Query: 406 GSLLSSCRTHGHVELAE----HAVKE--LINLEPWNSGNYVLLSNIYAEGGRWDDAETL- 458
S++S+C G L + VK +++ NS L +Y G W +AE +
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS-----LIQMYLSLGSWGEAEKVF 346
Query: 459 -RM 460
RM
Sbjct: 347 SRM 349
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 2e-11
Identities = 87/442 (19%), Positives = 162/442 (36%), Gaps = 97/442 (21%)
Query: 27 RHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVK 86
R L + A F C +K A + +RNP++ FN ++ + + + ++
Sbjct: 399 RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALR 458
Query: 87 LFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYT 146
+ L++ G+ D + L+ C
Sbjct: 459 VLRLVQEAGLKADCKLYTTLISTC-----------------------------------A 483
Query: 147 SCGQMDDGMKVFDEMSHRDVIVRNL-----MIHGFCKKGDVDKGLYLFREMRERSV---- 197
G++D +VF EM + V N+ +I G + G V K + MR ++V
Sbjct: 484 KSGKVDAMFEVFHEMVNAGV-EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542
Query: 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFEL--DEATVVAVLPICARLGAVD----IG 251
V +N +IS+ G+SG A + EM+ + + D TV A++ CA G VD +
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602
Query: 252 QWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV----VSWNAMIS 307
Q IH Y + V V+ + G D A +++ ++ +K V V ++A++
Sbjct: 603 QMIHEYN-----IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 308 GLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELF---------- 357
G + E+ + +G+ ++ ++ C++A +KA EL+
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 358 ------ASMTGL------------------HSIVPNLEHYGCMVDVLGRSGCVREAYDLI 393
A +T L + PN Y ++ R DL+
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777
Query: 394 ---RSMSIRPNAAIWGSLLSSC 412
+ I+PN + + C
Sbjct: 778 SQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 2e-10
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 297 KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH 346
+VV++N +I G G+ E ++L+ +M +G+ PN T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 58/283 (20%), Positives = 119/283 (42%), Gaps = 43/283 (15%)
Query: 149 GQMDDGMKVFDEMSHRDVIVRNLMIHG----FCKK-GDVDKGLYLFREMRERSVVSWNLM 203
G++ D + + ++M R ++ + + H CKK V + + +R ++ ++N M
Sbjct: 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFN-M 442
Query: 204 ISSLGKSGRDSE-ALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSG 262
+ S+ S +D + ALR+ +++ + D ++ CA+ G VD + ++G
Sbjct: 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502
Query: 263 LYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELY 322
+ NV ++ A+I G A G+ Y
Sbjct: 503 V--------------------------------EANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 323 EQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG-LHSIVPNLEHYGCMVDVLG 381
M +K V P++ F +++ C +G V++A ++ A M H I P+ G ++
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 382 RSGCV---REAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELA 421
+G V +E Y +I +I+ ++ ++SC G + A
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 1e-08
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 4/49 (8%)
Query: 165 DVIVRNLMIHGFCKKGDVDKGLYLFREMRER----SVVSWNLMISSLGK 209
DV+ N +I G+CKKG V++ L LF EM++R +V +++++I L K
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 3e-06
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 196 SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEAT 234
VV++N +I K G+ EAL+LF+EM+ + + + T
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 170 NLMIHGFCKKGDVDKGLYLFREMRERSVV 198
N +I G CK G V++ L LF+EM+ER +
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 1e-05
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 165 DVIVRNLMIHGFCKKGDVDKGLYLFREMR 193
DV+ N +I G C+ G VD+ + L EM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 63 PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKAC 110
P V+ +N++I Y G EE +KLF +K GI P+ YT++ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 198 VSWNLMISSLGKSGRDSEALRLFHEMRD 225
V++N +IS K+G+ EAL LF EM++
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKE 28
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 170 NLMIHGFCKKGDVDKGLYLFREMRERSV 197
N +I G+CK G +++ L LF+EM+E+ V
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 7e-05
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGV 330
V++N++ISG G+ E +EL+++M KGV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 8e-05
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDE 232
V++N +I L K+GR EAL LF EM+++ E D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 2e-04
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 194 ERSVVSWNLMISSLGKSGRDSEALRLFHEMR 224
+ VV++N +I L ++GR EA+ L EM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 272 NALVDFYCKCGILDTARNVFKEIPRK----NVVSWNAMISGLA 310
N L+D YCK G ++ A +F E+ ++ NV +++ +I GL
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (98), Expect = 3e-04
Identities = 44/215 (20%), Positives = 83/215 (38%), Gaps = 10/215 (4%)
Query: 272 NALVDFYCKCGILDTARNVFKEIPRK-----NVVSWNAMISGLAFNGRGELGVELYEQMI 326
L K G L+ A + ++ + + L G+ E +EL E+ +
Sbjct: 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122
Query: 327 AKGVSPNKATFVGVLTCCAHAGLVEKARELF----ASMTGLHSIVPNLEHYGCMVDVLGR 382
A P+ A + L G E+A EL+ L+ + L G +++ LGR
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182
Query: 383 SGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLL 442
E + ++ +A +L G E A ++ + L+P N+ L
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL 242
Query: 443 SNIYAEGGRWDDA-ETLRMWMRENNVKKSPGQSLI 476
+ + E GR+++A E L + + + G +L+
Sbjct: 243 ALLLLELGRYEEALEALEKALELDPDLYNLGLALL 277
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN 333
V++N +I GL GR E +EL+++M +G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.004
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 145 YTSCGQMDDGMKVFDEMSHR----DVIVRNLMIHGFCK 178
Y G++++ +K+F+EM R +V +++I G CK
Sbjct: 13 YCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.77 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.76 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.76 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.75 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.73 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.71 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.64 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.57 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.54 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.53 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.52 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.51 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.48 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.46 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.4 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.4 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.39 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.36 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.3 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.29 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.29 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.28 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.27 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.25 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.23 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.22 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.21 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.19 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.18 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.16 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.15 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.14 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.12 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.11 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.11 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.1 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.05 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.04 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.03 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.02 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.0 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.0 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.0 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.98 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.94 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.92 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.91 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.91 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.85 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.81 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.8 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.79 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.78 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.75 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.75 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.74 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.69 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.66 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.64 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.63 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.63 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.62 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.58 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.57 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.57 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.54 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.54 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.47 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.47 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.44 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.4 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.39 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.39 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.38 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.37 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.37 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.34 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.31 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.31 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.28 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.26 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.24 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.23 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.23 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.22 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.22 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.22 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.11 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.1 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.08 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.04 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.03 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.02 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.02 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.02 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.02 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.01 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.01 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.99 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.98 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.97 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.97 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.94 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.94 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.9 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.88 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.87 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.83 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.82 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.81 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.81 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.8 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.79 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.78 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.77 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.77 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.75 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.74 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.73 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.73 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.71 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.7 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.68 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.64 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.61 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.6 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.57 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.57 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.54 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.54 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.52 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.52 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.51 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.49 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.49 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.45 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.45 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.4 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.4 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.39 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.34 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.33 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.28 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.26 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 97.2 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.18 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.13 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.13 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.13 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.06 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.04 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.95 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.91 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.9 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.86 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.82 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.75 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.71 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.71 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.58 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.55 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.53 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.5 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.5 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.48 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.44 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.41 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.38 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.38 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.36 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.33 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.33 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.31 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.22 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.22 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.16 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.16 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.1 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.02 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.93 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.87 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.86 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.78 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.76 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.75 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.71 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.69 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.68 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.66 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.57 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.57 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.51 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.42 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.39 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.33 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.31 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.27 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.21 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.18 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.11 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.0 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.99 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.93 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.86 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.85 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.8 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.72 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.66 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.54 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.53 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 94.52 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.51 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.37 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.37 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.31 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.22 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.19 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.1 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.04 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.79 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 93.72 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.71 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.57 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.54 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.35 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.26 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 93.26 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.25 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.18 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.16 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.14 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.1 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 92.62 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.48 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.44 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.28 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.24 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.23 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 92.19 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.16 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.0 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 91.99 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 91.97 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.91 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 91.9 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.5 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.49 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.47 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.41 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.29 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 91.22 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.17 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.94 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.86 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.79 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.75 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.72 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.68 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.62 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.42 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.22 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.17 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 89.75 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.64 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.61 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.37 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 89.3 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 89.13 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.06 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.8 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.76 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 87.61 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 87.19 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.16 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.14 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 86.99 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 86.95 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.89 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 86.86 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 86.02 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 85.89 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 85.88 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 85.28 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 85.05 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 84.91 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 84.88 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 84.76 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 84.55 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.65 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 83.61 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 83.6 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 83.46 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 82.96 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.74 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.43 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 82.04 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 81.77 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 81.75 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 81.16 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 80.97 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 80.55 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.11 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-73 Score=567.70 Aligned_cols=472 Identities=35% Similarity=0.653 Sum_probs=427.2
Q ss_pred HHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCc
Q 042503 3 RKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSE 82 (477)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (477)
..++++|...+++..+.+++..+.+.|+.||+.+++.++.+|++.|+++.|.++|+.|+.||+.+||.+|.+|++.|+++
T Consensus 191 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECL 270 (857)
T ss_pred HHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHH
Confidence 34444444444455555555555555555666677888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccC
Q 042503 83 EPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMS 162 (477)
Q Consensus 83 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (477)
+|+++|++|.+.|+.||..||+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCchHHhHHHHHHHHhcCChHHHHHHHH----------------------------------------------------
Q 042503 163 HRDVIVRNLMIHGFCKKGDVDKGLYLFR---------------------------------------------------- 190 (477)
Q Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------------------------------- 190 (477)
.||..+|+.++.+|++.|++++|.++|+
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 8777777777777776555555555554
Q ss_pred ------------------hcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchH
Q 042503 191 ------------------EMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQ 252 (477)
Q Consensus 191 ------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (477)
+|.++|..+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|+.+.+.
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 44445666677777777777777777777777765 58999999999999999999999999
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 042503 253 WIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSP 332 (477)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 332 (477)
+++..+.+.|. .++..++++++.+|++.|++++|..+|+.+ .+|..+||++|.+|++.|+.++|.++|++|.+.|+.|
T Consensus 510 ~i~~~~~~~g~-~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 510 EIHAHVLRTGI-GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHHHHHhCC-CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99999999998 889999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSC 412 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 412 (477)
|..||+.++.+|.+.|.+++|.++|+.|.+..|+.|+..+|+.++.+|.+.|++++|.+++++|+++||..+|++|+.+|
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999778999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCCccCC
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~ 477 (477)
..+|+.+.++...+++.+++|+++..|..+++.|...|+|++|.++.+.|.+.|++++||+||||
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie 732 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE 732 (857)
T ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999997
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-72 Score=550.88 Aligned_cols=471 Identities=28% Similarity=0.505 Sum_probs=457.1
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhh-cccchhHHHhHHHHHhhcCChhHHHHHhccCCC----CCcchHHHHHHHHH
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHK-LHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN----PSVLLFNSMIKAYS 76 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~ 76 (477)
+..++..+...|++++|.++++.|...+ +.||..+|+.++.+|++.++++.+.+++..|.+ ||+.+||.++.+|+
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~ 169 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV 169 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence 4567889999999999999999999865 689999999999999999999999999998864 99999999999999
Q ss_pred hcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHH
Q 042503 77 LNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMK 156 (477)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (477)
+.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++.+.|+.+.+.+
T Consensus 170 k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 170 KCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred cCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 99999999999999964 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCC----CchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 042503 157 VFDEMSH----RDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDE 232 (477)
Q Consensus 157 ~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 232 (477)
++..+.+ +|..+++.++.+|++.|++++|.++|++|.++|+.+||.++.+|++.|++++|+.+|++|.+.|+.||.
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9887754 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhc
Q 042503 233 ATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFN 312 (477)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (477)
.||+.++.+|++.|+++.|.+++..+.+.|. +++..+++.|+.+|++.|++++|.++|++|.++|..+||.||.+|++.
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+..|+.|+..+|+.++++|++.|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 042503 393 IRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 393 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
+++++..|+..+|+.++.+|..+|+++.|..+++++.+..|.+..+|..++.+|++.|++++|.+++++|.+.|+++.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCC
Q 042503 473 QSLIE 477 (477)
Q Consensus 473 ~s~~~ 477 (477)
+||||
T Consensus 565 ~s~i~ 569 (697)
T PLN03081 565 CTWIE 569 (697)
T ss_pred eeEEE
Confidence 99986
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-66 Score=515.51 Aligned_cols=465 Identities=27% Similarity=0.441 Sum_probs=402.0
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCC
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPS 81 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (477)
|..++++|...+.++.+.+++..+.+.+..+++.+++.++.+|++.|+++.|.++|++|++||+.+||.+|.+|++.|++
T Consensus 89 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~ 168 (857)
T PLN03077 89 YVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYF 168 (857)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCH
Confidence 45677778877888888888888888887788888899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhccc
Q 042503 82 EEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEM 161 (477)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (477)
++|+++|++|...|+.||..||+.++++|...+++..+.+++..+.+.|+.|+..+++.|+.+|++.|++++|.++|++|
T Consensus 169 ~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m 248 (857)
T PLN03077 169 DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248 (857)
T ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCchHHhHHHHHHHH----------------------------------------------------------------
Q 042503 162 SHRDVIVRNLMIHGFC---------------------------------------------------------------- 177 (477)
Q Consensus 162 ~~~~~~~~~~l~~~~~---------------------------------------------------------------- 177 (477)
..+|..+||+++.+|+
T Consensus 249 ~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 7766655555555554
Q ss_pred ------hcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccch
Q 042503 178 ------KKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIG 251 (477)
Q Consensus 178 ------~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 251 (477)
+.|++++|.++|++|..||..+|+.++.+|++.|++++|+.+|++|.+.|+.||..||+.++.+|++.|+++.+
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence 46666777777777777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 042503 252 QWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVS 331 (477)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 331 (477)
.++++.+.+.|. .++..+++.|+.+|++.|++++|.++|++|.++|..+|+.++.+|.+.|+.++|..+|++|.. +++
T Consensus 409 ~~l~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 409 VKLHELAERKGL-ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHHHHHHhCC-CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC
Confidence 999999999999 899999999999999999999999999999999999999999999999999999999999986 589
Q ss_pred CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 042503 332 PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSS 411 (477)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 411 (477)
||..||+.++.+|++.|+.+.+.+++..+. +.|+.++..+++.|+.+|.++|++++|.++|+++ .||..+|+.++.+
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~ 563 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTG 563 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHH
Confidence 999999999999999999999999988888 5777777777777777777777777777777666 6666777777777
Q ss_pred HHHcCChHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhcCCchHHHHHHHHHH-hCCCccCC
Q 042503 412 CRTHGHVELAEHAVKELINLE-PWNSGNYVLLSNIYAEGGRWDDAETLRMWMR-ENNVKKSP 471 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~ 471 (477)
|.++|+.++|.++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|++|. +.|+.|+.
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 777777777777777766544 2246666666777777777777777777776 45665543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-65 Score=499.03 Aligned_cols=467 Identities=17% Similarity=0.232 Sum_probs=323.2
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcc--------------------------------cchhHHHhHHHHHhhcCC
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLH--------------------------------QSNLILAHFVSVCGTLNE 49 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~l~~~~~~~~~ 49 (477)
|..+...|.+.|++++|.++++.|.+.|+. |+..+|+.++.+|++.|+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~ 452 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQD 452 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcC
Confidence 344555556666666666666666665532 556666667777777777
Q ss_pred hhHHHHHhccCCC----CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHH
Q 042503 50 IKYATKIFNQMRN----PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGE 125 (477)
Q Consensus 50 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 125 (477)
++.|.++|+.|.+ ||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7777777766654 666677777777777777777777777777767677777777777777777777777777777
Q ss_pred HHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccC------CCchHHhHHHHHHHHhcCChHHHHHHHHhcCC----C
Q 042503 126 IIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMS------HRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE----R 195 (477)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~ 195 (477)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+ |
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 7777777777777777777777777777777777663 26666777777777777777777777777654 4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHH
Q 042503 196 SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALV 275 (477)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 275 (477)
+..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.|.+.|. .++..+|+.++
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-~pd~~tynsLI 691 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI-KLGTVSYSSLM 691 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHH
Confidence 55677777777777777777777777777777777777777777777777777777777777777776 66677777777
Q ss_pred HHHHhcCChHHHHHHhccCC----CCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH
Q 042503 276 DFYCKCGILDTARNVFKEIP----RKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE 351 (477)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (477)
.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|+++
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 77777777777777777663 36777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhhhccCCCCChHHHHHHHHHHHh----c-------------------CCHHHHHHHHHhc---CCCCCHHHH
Q 042503 352 KARELFASMTGLHSIVPNLEHYGCMVDVLGR----S-------------------GCVREAYDLIRSM---SIRPNAAIW 405 (477)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~---~~~p~~~~~ 405 (477)
.|.++++.|. +.|+.||..+|+.++..|.+ + +..+.|..+|++| |+.||..+|
T Consensus 772 ~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 772 VGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 7777777776 46777777777776654321 1 1234567777777 667777777
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhc-CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELINL-EPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
+.++.++...+....+..+++.+... .+.+..+|+.++.++.+. .++|..++++|.+.|+.|+-.
T Consensus 851 ~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 851 SQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 77776666666666666666655432 244567888888877322 358999999999999888753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=495.23 Aligned_cols=436 Identities=17% Similarity=0.245 Sum_probs=342.5
Q ss_pred cccchhHHHhHHHHHhhcCChhHHHHHhccCCCC-----CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHH
Q 042503 30 LHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNP-----SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFA 104 (477)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 104 (477)
..++...+..++..+++.|++++|.++|+.|.++ +...++.++..|.+.|..++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 3456667777777788888888888888887763 334556667777888888888888877764 7888888
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC----CchHHhHHHHHHHHhcC
Q 042503 105 PLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH----RDVIVRNLMIHGFCKKG 180 (477)
Q Consensus 105 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~ 180 (477)
.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 88888888888888888888888888888888888888888888888888888888874 78888888888888888
Q ss_pred ChHHHHHHHHhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHhhccCcccchHHH
Q 042503 181 DVDKGLYLFREMRE----RSVVSWNLMISSLGKSGRDSEALRLFHEMRD--QAFELDEATVVAVLPICARLGAVDIGQWI 254 (477)
Q Consensus 181 ~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 254 (477)
++++|.++|++|.. ||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888888753 7778888888888888888888888888865 56788888888888888888888888888
Q ss_pred HHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 042503 255 HSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV 330 (477)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 330 (477)
|+.|.+.++ +++..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+
T Consensus 602 f~~M~e~gi-~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 602 YQMIHEYNI-KGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHcCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 888888887 77778888888888888888888888887764 6777888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCCCHHHHHH
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM---SIRPNAAIWGS 407 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ 407 (477)
+||..+|+.++.+|++.|++++|.++|++|. ..|+.||..+|+.|+.+|++.|++++|.++|++| ++.||..+|+.
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 8888888888888888888888888888887 4677888888888888888888888888888877 77788888888
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CCCCchHHHHHHHHH----hcC-------------------CchHHHHHHHHHH
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLE-PWNSGNYVLLSNIYA----EGG-------------------RWDDAETLRMWMR 463 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~~ 463 (477)
++.+|.+.|+++.|.++++++.+.+ .++..+|+.++.++. +++ ..++|..+|++|+
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 8888888888888888888887765 334666777765432 111 2356888888888
Q ss_pred hCCCccCC
Q 042503 464 ENNVKKSP 471 (477)
Q Consensus 464 ~~~~~~~~ 471 (477)
+.|+.|+.
T Consensus 840 ~~Gi~Pd~ 847 (1060)
T PLN03218 840 SAGTLPTM 847 (1060)
T ss_pred HCCCCCCH
Confidence 88887764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-61 Score=470.36 Aligned_cols=462 Identities=17% Similarity=0.275 Sum_probs=425.2
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCC
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPS 81 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (477)
|..++.+|.+.++++.+.+++..+.+.|+.||+.+++.++.+|++.|+++.|.++|++|++||..+||.++.+|++.|++
T Consensus 126 ~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~ 205 (697)
T PLN03081 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNY 205 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhccc
Q 042503 82 EEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEM 161 (477)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (477)
++|.++|++|.+.|+.|+..+|+.++.+|.+.|..+.+.+++..+.+.|+.||..+++.|+.+|+++|++++|.++|++|
T Consensus 206 ~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m 285 (697)
T PLN03081 206 REAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM 285 (697)
T ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHhHHHHHHHHhcCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 042503 162 SHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR----ERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVA 237 (477)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (477)
.++|..+||.++.+|++.|++++|.++|++|. .||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.
T Consensus 286 ~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 286 PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 99999999999999999999999999999995 48999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC----CCceeHHHHHHHHHhcC
Q 042503 238 VLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR----KNVVSWNAMISGLAFNG 313 (477)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~ 313 (477)
++.+|++.|+++.|.++|+.|. .++..+|+.++.+|++.|+.++|.++|++|.+ ||..+|+.++.+|.+.|
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 9999999999999999999885 46778999999999999999999999999864 89999999999999999
Q ss_pred CchHHHHHHHHHHH-cCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 042503 314 RGELGVELYEQMIA-KGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 314 ~~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
..++|.++|+.|.+ .|+.|+..+|+.++.++++.|++++|.++++++. +.|+..+|+.|+.+|...|+++.|..+
T Consensus 441 ~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~----~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP----FKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999986 6999999999999999999999999999998764 589999999999999999999999999
Q ss_pred HHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CCCchHHHHHHH----------H-HhcCCchHHHH
Q 042503 393 IRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEP--WNSGNYVLLSNI----------Y-AEGGRWDDAET 457 (477)
Q Consensus 393 ~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~----------~-~~~g~~~~A~~ 457 (477)
++++ +..|+ ..+|..++..|.+.|++++|.+++++|.+.+- ....+|..+... . ....-++...+
T Consensus 517 ~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 596 (697)
T PLN03081 517 AEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDE 596 (697)
T ss_pred HHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHH
Confidence 9998 66675 57999999999999999999999999987762 112222111100 0 00111455667
Q ss_pred HHHHHHhCCCccCCC
Q 042503 458 LRMWMRENNVKKSPG 472 (477)
Q Consensus 458 ~~~~~~~~~~~~~~~ 472 (477)
+.++|.+.|..|+..
T Consensus 597 l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 597 LMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHcCCCCCcc
Confidence 888889999887754
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=287.74 Aligned_cols=447 Identities=10% Similarity=0.050 Sum_probs=248.6
Q ss_pred HHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCch
Q 042503 7 RLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEE 83 (477)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 83 (477)
..+...|++++|..+++.+.... ++++.++..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++
T Consensus 439 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 439 LSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 33444455555555555444432 33444555555555555555555555554432 223344445555555555555
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC
Q 042503 84 PVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH 163 (477)
Q Consensus 84 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 163 (477)
|.+.|+.+.+.+ +.+..++..+...+.+.|+.++|..+++++.+.++. +...+..++..+...|++++|..+++.+.+
T Consensus 518 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 595 (899)
T TIGR02917 518 AIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAAD 595 (899)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555432 234445555555555555555555555555544322 344445555555555666666655555543
Q ss_pred ---CchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 042503 164 ---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVA 237 (477)
Q Consensus 164 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (477)
.+...|..+..++...|++++|.+.|+++.+ .+...+..+...+.+.|++++|...|+++.+.. +.+..++..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 674 (899)
T TIGR02917 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIG 674 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 3344555555666666666666666655543 233445555555566666666666666555432 233455555
Q ss_pred HHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCc
Q 042503 238 VLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRG 315 (477)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 315 (477)
+...+...|+++.|..+++.+.... +.+...+..+...+...|++++|...|+++.. |+..++..++.++.+.|++
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 752 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNT 752 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCH
Confidence 5555666666666666666665554 44555555556666666666666666665543 3334455555566666666
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRS 395 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (477)
++|...++++.+.. +.+...+..+...|...|++++|...|+++.+. .+++...++.+...+...|+ .+|+.++++
T Consensus 753 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 753 AEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 66666666665543 445556666666666666666666666666532 24455556666666666666 556666666
Q ss_pred c-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 396 M-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 396 ~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
+ ...| ++..+..++..+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|+
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 829 ALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5 2222 334555566666666666666666666666666666666666666666666666666666654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=280.77 Aligned_cols=454 Identities=10% Similarity=0.035 Sum_probs=306.2
Q ss_pred HHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--------------------
Q 042503 3 RKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN-------------------- 62 (477)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------------- 62 (477)
..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|.+.|+.+.+
T Consensus 367 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 445 (899)
T TIGR02917 367 SLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSG 445 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcC
Confidence 344555556666666666666665543 22344455555555555555555555554432
Q ss_pred -----------------CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHH
Q 042503 63 -----------------PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGE 125 (477)
Q Consensus 63 -----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 125 (477)
++..+|..+...+...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.++.
T Consensus 446 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 524 (899)
T TIGR02917 446 QFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK 524 (899)
T ss_pred CHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 233445555555555555555555555555432 22333444445555555555555555555
Q ss_pred HHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhh
Q 042503 126 IIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVS 199 (477)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~ 199 (477)
+.+.++. +..++..+...+.+.|+.++|...++++.. .+...+..++..+.+.|++++|.++++.+.+ .+...
T Consensus 525 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 603 (899)
T TIGR02917 525 VLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA 603 (899)
T ss_pred HHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 5554322 444555555566666666666666655533 2334455566666666666666666666653 34556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHH
Q 042503 200 WNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC 279 (477)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (477)
|..+...+...|++++|...|+.+.+.. +.+...+..+..++...|++++|...++.+.+.. |.+...+..++..+.
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHH
Confidence 6777777777777777777777766543 3345556666667777777777777777777665 666666777777777
Q ss_pred hcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHH
Q 042503 280 KCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (477)
..|++++|..+++.+.+ ++...+..+...+...|++++|...++++...+ |+..++..+..++.+.|++++|.+.
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777776654 244566677777788888888888888887764 4446677778888888888888888
Q ss_pred HHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 357 FASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
++.+.+. .+.+...+..+...|...|++++|.+.|+++ ..+++...++.++..+...|+ .+|+..++++++..|.
T Consensus 759 ~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~ 835 (899)
T TIGR02917 759 LEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN 835 (899)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence 8888742 3567788888889999999999999999988 334566788889999999999 8899999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 042503 435 NSGNYVLLSNIYAEGGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (477)
++..+..++.++...|++++|.++++++++.+.
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999998764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-24 Score=223.69 Aligned_cols=350 Identities=12% Similarity=0.042 Sum_probs=164.2
Q ss_pred HHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchH---------------
Q 042503 6 LRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLF--------------- 68 (477)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~--------------- 68 (477)
++.+...++.+.|.+.++.++... +.++.++...+..+.+.|+.++|.+.++++.+ |+...+
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchh
Confidence 344445555555555555555554 23455555555555555666666555555543 222111
Q ss_pred --HHHHHHHHhcCCCchHHHHHHHHHhCCCCCCccc-HHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHH
Q 042503 69 --NSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYT-FAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELY 145 (477)
Q Consensus 69 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (477)
..+...+.+.|++++|.+.|+.+.+.+ +|+... ...........|+.++|.+.++.+.+..+. +...+..+...+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 122234455555666665555555432 222211 111111112235555555555555554322 344445555555
Q ss_pred HhcCChhhHHHHhcccCC-Cc-----hH-----------------Hh---------------------------------
Q 042503 146 TSCGQMDDGMKVFDEMSH-RD-----VI-----------------VR--------------------------------- 169 (477)
Q Consensus 146 ~~~g~~~~A~~~~~~~~~-~~-----~~-----------------~~--------------------------------- 169 (477)
...|++++|+..++++.. +. .. .+
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 555555555555554321 00 00 00
Q ss_pred -HHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHH---------
Q 042503 170 -NLMIHGFCKKGDVDKGLYLFREMRE--R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFEL-DEATV--------- 235 (477)
Q Consensus 170 -~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~--------- 235 (477)
......+...|++++|+..|++..+ | +...+..+..++.+.|++++|+..|++..+..... +...+
T Consensus 272 ~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 272 ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 0011223345555555555555543 2 34455555555555555655555555555432111 10000
Q ss_pred ---HHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CC-ceeH-------
Q 042503 236 ---VAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KN-VVSW------- 302 (477)
Q Consensus 236 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~------- 302 (477)
......+.+.|++++|...++++.+.. |.+...+..+...+...|++++|++.|+++.+ |+ ...+
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 011223344555555555555555554 44444444555555555555555555555442 11 1111
Q ss_pred -----------------------------------HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 303 -----------------------------------NAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 303 -----------------------------------~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
..+...+...|++++|+..+++..+.. +.+...+..+...+.+.
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 112223344566666666666666553 33445555566666666
Q ss_pred ccHHHHHHHHHHhh
Q 042503 348 GLVEKARELFASMT 361 (477)
Q Consensus 348 ~~~~~a~~~~~~~~ 361 (477)
|++++|...++++.
T Consensus 509 G~~~~A~~~l~~al 522 (1157)
T PRK11447 509 GQRSQADALMRRLA 522 (1157)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666666654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-26 Score=199.35 Aligned_cols=380 Identities=14% Similarity=0.114 Sum_probs=324.2
Q ss_pred cchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHH
Q 042503 65 VLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVEL 144 (477)
Q Consensus 65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (477)
..+|..+...+-..|++++|+..++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++.++. .......+...
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHH
Confidence 4678889999999999999999999999853 335788999999999999999999999999885432 22334445566
Q ss_pred HHhcCChhhHHHHhcccCC--Cc-hHHhHHHHHHHHhcCChHHHHHHHHhcCCCCh---hhHHHHHHHHHhcCChhHHHH
Q 042503 145 YTSCGQMDDGMKVFDEMSH--RD-VIVRNLMIHGFCKKGDVDKGLYLFREMRERSV---VSWNLMISSLGKSGRDSEALR 218 (477)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~ 218 (477)
+-..|+.++|...|.+..+ |. ...|+.|...+...|++..|++-|++...-|+ ..|-.|...|...+.+++|+.
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs 273 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVS 273 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHH
Confidence 6678999999998887765 33 45789999999999999999999999987333 478899999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-
Q 042503 219 LFHEMRDQAFELD-EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR- 296 (477)
Q Consensus 219 ~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 296 (477)
.|.+.... .|+ ...+..+...|...|..+.|+..++++.+.. |.-+.+|+.|..++...|+..+|...+.+...
T Consensus 274 ~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 274 CYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 99887765 554 4567777888899999999999999999998 88999999999999999999999999998875
Q ss_pred --CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC-hHHH
Q 042503 297 --KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN-LEHY 373 (477)
Q Consensus 297 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~ 373 (477)
....+.+.|..++...|.+++|..+|....+-. +--...++.|...|-+.|++++|+..+++... +.|+ ...|
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~ 425 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADAL 425 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHH
Confidence 345678899999999999999999999988753 33456788999999999999999999999883 4555 5789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
+.+...|...|+...|++.+.+. .+.|.. ..++.|...|...|+..+|+..|+.++++.|+.|+++..++..+.-..+
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcd 505 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCD 505 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhc
Confidence 99999999999999999999998 778875 6889999999999999999999999999999999999999988776666
Q ss_pred chH
Q 042503 452 WDD 454 (477)
Q Consensus 452 ~~~ 454 (477)
|.+
T Consensus 506 w~D 508 (966)
T KOG4626|consen 506 WTD 508 (966)
T ss_pred ccc
Confidence 555
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-24 Score=218.61 Aligned_cols=411 Identities=11% Similarity=0.020 Sum_probs=331.5
Q ss_pred HHHHHhhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcc---cHH---------
Q 042503 40 FVSVCGTLNEIKYATKIFNQMRN--P-SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEY---TFA--------- 104 (477)
Q Consensus 40 l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~--------- 104 (477)
....+...|++++|+..|++..+ | +...+..+..++.+.|++++|...|++..+.. |+.. .+.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhHH
Confidence 35667788999999999998765 4 66789999999999999999999999998753 4322 111
Q ss_pred ---HHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--C-chHHhHHHHHHHHh
Q 042503 105 ---PLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--R-DVIVRNLMIHGFCK 178 (477)
Q Consensus 105 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~ 178 (477)
.....+.+.|++++|...++++++..+. +...+..+..++...|++++|++.|++..+ | +...+..+...|.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence 1234567899999999999999997543 566778889999999999999999999876 3 3456666666664
Q ss_pred cCChHHHHHHHHhcCCCC------------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 042503 179 KGDVDKGLYLFREMRERS------------VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLG 246 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 246 (477)
.++.++|...++.+.... ...+..+...+...|++++|+..|++..+.. +-+...+..+...+.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 567899999998776421 2245567778889999999999999998863 335566778888999999
Q ss_pred cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCC----c---------eeHHHHHHHHHhcC
Q 042503 247 AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKN----V---------VSWNAMISGLAFNG 313 (477)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~~ 313 (477)
++++|...++.+.+.. |.++..+..+...+...++.++|...++.+.... . ..+..+...+...|
T Consensus 510 ~~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G 587 (1157)
T PRK11447 510 QRSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSG 587 (1157)
T ss_pred CHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCC
Confidence 9999999999999876 6677777777777888999999999999886421 1 11234456788899
Q ss_pred CchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 042503 314 RGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLI 393 (477)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (477)
+.++|..+++. .+++...+..+...+.+.|++++|+..|+++.+. .+.+...+..++..|...|++++|++.+
T Consensus 588 ~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 588 KEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999872 2566677788899999999999999999999853 2567788999999999999999999999
Q ss_pred Hhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 394 RSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG------NYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 394 ~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+.. ...|+ ...+..+..++...|++++|.+++++++...|.++. .+..++.++...|++++|+..+++...
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 988 44554 566777888999999999999999999988765543 566778999999999999999999864
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=190.58 Aligned_cols=420 Identities=13% Similarity=0.119 Sum_probs=350.1
Q ss_pred HhHHHHHhhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccC
Q 042503 38 AHFVSVCGTLNEIKYATKIFNQMRN--P-SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVG 114 (477)
Q Consensus 38 ~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 114 (477)
..+....-+.|++++|++.-...-. | +....-.+-..+.+..+.+....--....+. .+.-..+|..+.+.+-..|
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 3455556677899998887665543 2 2222333344566666666555443333332 3456788999999999999
Q ss_pred CchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--CchHH-hHHHHHHHHhcCChHHHHHHHHh
Q 042503 115 DLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--RDVIV-RNLMIHGFCKKGDVDKGLYLFRE 191 (477)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~a~~~~~~ 191 (477)
+++.|...++.+++..++ ....|..+..++...|+.+.|.+.|....+ |+... .+.+.......|++++|...+.+
T Consensus 131 ~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred hHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 999999999999996544 678999999999999999999999998877 54443 33455566678999999999988
Q ss_pred cCC--CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccch
Q 042503 192 MRE--RS-VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELD-EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKV 267 (477)
Q Consensus 192 ~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 267 (477)
..+ |. ..+|+.|...+-.+|+...|++.|++..+. .|+ ...|..+...|...+.++.|...+.++.... |..
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr--pn~ 285 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR--PNH 285 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC--Ccc
Confidence 775 43 357999999999999999999999998875 454 4568889999999999999999999999887 888
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC--CC-ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR--KN-VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCC 344 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 344 (477)
..++..+...|..+|.+|.|+..+++..+ |+ +..|+.|..++...|+..+|++.|.+..... +......+.|...+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 88999999999999999999999999876 43 3689999999999999999999999999874 55678899999999
Q ss_pred hccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHH
Q 042503 345 AHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~ 422 (477)
...|.++.|..+|....+- .+--...++.|...|.++|++++|+..+++. .++|+. ..++.++..|-..|+.+.|+
T Consensus 365 ~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 9999999999999998842 2334567899999999999999999999998 889987 68999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 423 HAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+.+.+++..+|.-.+++..|+.+|..+|+..+|+.-++..++..
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999987753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-23 Score=198.45 Aligned_cols=419 Identities=11% Similarity=-0.013 Sum_probs=277.8
Q ss_pred HhHHHHHhhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCC
Q 042503 38 AHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGD 115 (477)
Q Consensus 38 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 115 (477)
......+.+.|++++|+..|++... |+...|..+..+|.+.|++++|++.++...+.+ +.+...+..+..++...|+
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 3445556666777777777766554 555666666666777777777777777666643 2234456666666667777
Q ss_pred chhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCC
Q 042503 116 LRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRER 195 (477)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 195 (477)
+++|..-+..+...+...+.. ...++..+........+...++.-.. +...+..+.. |...........-+....+.
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred HHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhhccccc
Confidence 777766665544332111111 11111111111112223333322221 1111111111 11111111111111111111
Q ss_pred Ch---hhHHHHHHHH---HhcCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccch
Q 042503 196 SV---VSWNLMISSL---GKSGRDSEALRLFHEMRDQA-FEL-DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKV 267 (477)
Q Consensus 196 ~~---~~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 267 (477)
+. ..+..+...+ ...+++++|...|+.....+ ..| ....+..+...+...|+++.|...++.+.... |..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~ 364 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRV 364 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCc
Confidence 11 1111111111 23468899999999988764 234 34456677777888999999999999999887 777
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCC 344 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 344 (477)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...|++..+.. +.+...+..+..++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence 88888999999999999999999988765 356788888999999999999999999998875 55677888888899
Q ss_pred hccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-H-------HHHHHHHHHHHc
Q 042503 345 AHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-A-------IWGSLLSSCRTH 415 (477)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~ 415 (477)
.+.|++++|+..|++..+. .+.+...++.+...+...|++++|++.|++. ...|+. . .++..+..+...
T Consensus 444 ~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~ 521 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK 521 (615)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999998842 3556778889999999999999999999997 444431 1 122222233446
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 416 GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
|++++|.+.++++++++|.+..++..++.++.+.|++++|++++++..+.
T Consensus 522 ~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 522 QDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999998889999999999999999999999998765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-21 Score=188.98 Aligned_cols=226 Identities=12% Similarity=0.042 Sum_probs=172.0
Q ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHH
Q 042503 233 ATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLA 310 (477)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~ 310 (477)
..+..+..++.. ++.++|...+....... |.+ .....+...+...|++++|...|+++.. ++...+..+..++.
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all 553 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDA-WQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ 553 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--Cch-HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence 334444444443 56666777666666554 332 2233445555688889999888887654 34445666677788
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHH
Q 042503 311 FNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAY 390 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (477)
+.|++++|..++++..+.. +++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|+
T Consensus 554 ~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 554 AAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8899999999999888765 334444444444555669999999999998842 467888899999999999999999
Q ss_pred HHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 391 DLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 391 ~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..+++. ...|+ ...++.+..++...|++++|+..++++++..|.++.++..++.++...|++++|...+++.++..
T Consensus 630 ~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 630 SDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999998 55554 46788888899999999999999999999999999999999999999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-23 Score=188.46 Aligned_cols=291 Identities=14% Similarity=0.087 Sum_probs=202.0
Q ss_pred hcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhccCcccch
Q 042503 178 KKGDVDKGLYLFREMRE--R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELD---EATVVAVLPICARLGAVDIG 251 (477)
Q Consensus 178 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 251 (477)
..|++++|...|+++.+ | +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 34444444444444443 1 223445555555555555555555555554321111 12344455555555666666
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc--------eeHHHHHHHHHhcCCchHHHHHHH
Q 042503 252 QWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV--------VSWNAMISGLAFNGRGELGVELYE 323 (477)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~ 323 (477)
..++..+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.++ ..+..+...+.+.|++++|...++
T Consensus 127 ~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 127 EELFLQLVDEG--DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHcCC--cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 66665555543 45555566666666666777766666666543211 134556677788999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH
Q 042503 324 QMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA 402 (477)
Q Consensus 324 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 402 (477)
++.+.. +.+...+..+...+.+.|++++|.++++++.+ .+......+++.++.+|...|++++|.+.++++ ...|+.
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~ 282 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE-QDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA 282 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 998764 44566788888999999999999999999984 221122456788899999999999999999998 667888
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCCC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE---GGRWDDAETLRMWMRENNVKKSPGQ 473 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 473 (477)
..+..++..+.+.|++++|..+++++++..|+++ .+..++..+.. .|+.+++..+++++.+.+++++|.+
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 7788899999999999999999999999999765 55555555543 5699999999999999999999874
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-20 Score=184.75 Aligned_cols=444 Identities=11% Similarity=0.016 Sum_probs=256.0
Q ss_pred cCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCCCchHHHHH
Q 042503 11 GRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNSMIKAYSLNGPSEEPVKLF 88 (477)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 88 (477)
..|++++|...++..++..+ .++.++..+...|...|+.++|+..+++..+ |+-..|..++..+ +++.+|.+++
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP-~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVP-DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 44888888888888888873 3478888888888888888888888888776 4333333333222 7777888888
Q ss_pred HHHHhCCCCCCcccHHHHHHHh-----hccCCchhHHHHHHHHHHhcccCcchHHHHH-HHHHHhcCChhhHHHHhcccC
Q 042503 89 ALLKNLGIWPDEYTFAPLLKAC-----LGVGDLRVGQCVHGEIIRSGFERFGSIRIGV-VELYTSCGQMDDGMKVFDEMS 162 (477)
Q Consensus 89 ~~~~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~ 162 (477)
+++.+.. +-+..++..+.... ....+.++|.+.++ .....+.|+..+.... ..+|.+.|++++|++++.++.
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 8887753 22233333333320 11222244444444 2222222233333333 555556666666666555554
Q ss_pred C---CchHHhHHHHHHHHh-cCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHH-
Q 042503 163 H---RDVIVRNLMIHGFCK-KGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFE-LDEATVV- 236 (477)
Q Consensus 163 ~---~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~- 236 (477)
+ .+......+...|.. .++ +++..+++...+.+...+..++..+.+.|+.++|..+++++...... |...++.
T Consensus 210 k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~ 288 (987)
T PRK09782 210 QQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLY 288 (987)
T ss_pred hcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHH
Confidence 4 122223333344444 233 44444444333334444555555555555555555555443221000 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 042503 237 -------------------------------------------------------------------------------- 236 (477)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (477)
T Consensus 289 ~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 368 (987)
T PRK09782 289 LLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLL 368 (987)
T ss_pred HHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHH
Confidence
Q ss_pred ------------HHHHHhhccCcccchHHHHHHHHHh-CC----------------------------------------
Q 042503 237 ------------AVLPICARLGAVDIGQWIHSYAESS-GL---------------------------------------- 263 (477)
Q Consensus 237 ------------~l~~~~~~~~~~~~a~~~~~~~~~~-~~---------------------------------------- 263 (477)
.+.-...+.|+.++|..+++..... +-
T Consensus 369 y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 448 (987)
T PRK09782 369 YQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQR 448 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhH
Confidence 0000011223333333333333221 00
Q ss_pred ----------------------ccc--hhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHH--HHHHHhcCCchH
Q 042503 264 ----------------------YRK--VVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAM--ISGLAFNGRGEL 317 (477)
Q Consensus 264 ----------------------~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~ 317 (477)
.|+ +...+..+..++.. +++++|...+.+.....+..+..+ ...+...|++++
T Consensus 449 ~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 449 QWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHH
Confidence 011 33333334444433 444455554444333222223333 233346777888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-
Q 042503 318 GVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM- 396 (477)
Q Consensus 318 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 396 (477)
|...++++... +|+...+..+..++.+.|+.++|...++...+ .. +++...+..+.....+.|++++|...+++.
T Consensus 528 Ai~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~-l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 528 ALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ-RG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 88877776543 44444555666677778888888888888774 21 333333334444455669999999999988
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 397 SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 397 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...|+...+..+..++.+.|++++|+..++++++.+|+++..+..++.++...|++++|+..+++.++..
T Consensus 604 ~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 604 NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 7778888999999999999999999999999999999999999999999999999999999999998764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-20 Score=182.21 Aligned_cols=356 Identities=11% Similarity=-0.030 Sum_probs=214.9
Q ss_pred hhcCChhHHHHHhccCCC------CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchh
Q 042503 45 GTLNEIKYATKIFNQMRN------PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRV 118 (477)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 118 (477)
.+..+|+.---+|...++ .+......++..+.+.|++++|..+++...... +-+...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 455666666666665554 233445566777888899999999988888753 3345566666677777889999
Q ss_pred HHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--C-chHHhHHHHHHHHhcCChHHHHHHHHhcCC-
Q 042503 119 GQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--R-DVIVRNLMIHGFCKKGDVDKGLYLFREMRE- 194 (477)
Q Consensus 119 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 194 (477)
|...++.+++..+. +...+..+...+...|++++|...+++..+ | +...+..+...+...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999988886443 556677777888888888888888887765 3 345566667777777777777777765532
Q ss_pred -CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHH
Q 042503 195 -RSV-VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGN 272 (477)
Q Consensus 195 -~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 272 (477)
|+. ..+..+ ..+...|++++|...++.+......++......+...+...|++++|...++.+.... |.+...+.
T Consensus 174 ~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~ 250 (656)
T PRK15174 174 VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRR 250 (656)
T ss_pred CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHH
Confidence 222 222222 3356667777777777766554322333333334445555566666666666555554 44444444
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHH
Q 042503 273 ALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEK 352 (477)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (477)
.+...+...|++++|. .+|...+++..+.. +.+...+..+...+...|++++
T Consensus 251 ~Lg~~l~~~G~~~eA~---------------------------~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 251 SLGLAYYQSGRSREAK---------------------------LQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred HHHHHHHHcCCchhhH---------------------------HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 4444444444444310 02556666665543 3345556666666666666666
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAI-WGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
|...++++.+.. +.+...+..+..++.+.|++++|++.|+++ ...|+... +..+..++...|+.++|...|+++++
T Consensus 303 A~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 303 AIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666665321 333445555666666666666666666665 33444322 23344556666666666666666666
Q ss_pred cCCCC
Q 042503 431 LEPWN 435 (477)
Q Consensus 431 ~~p~~ 435 (477)
..|.+
T Consensus 381 ~~P~~ 385 (656)
T PRK15174 381 ARASH 385 (656)
T ss_pred hChhh
Confidence 66554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-20 Score=182.13 Aligned_cols=400 Identities=11% Similarity=0.038 Sum_probs=241.9
Q ss_pred ccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHH
Q 042503 31 HQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLL 107 (477)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 107 (477)
+.++....-.+.+....|+.++|+++|..... .+...+..+...+...|++++|.++|++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45666677777888888999999888887664 333457888888888899999999988887753 44556667777
Q ss_pred HHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--C-chHHhHHHHHHHHhcCChHH
Q 042503 108 KACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--R-DVIVRNLMIHGFCKKGDVDK 184 (477)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 184 (477)
..+...|++++|...++++++..+. +.. +..+..++...|++++|+..++++.+ | +...+..+...+...+..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 7888888888888888888876433 444 77777888888888888888888766 3 34445566667777777788
Q ss_pred HHHHHHhcCC-CCh------hhHHHHHHHHHh-----cCCh---hHHHHHHHHHHHc-CCCCCHH-HHHHHHHHhhccCc
Q 042503 185 GLYLFREMRE-RSV------VSWNLMISSLGK-----SGRD---SEALRLFHEMRDQ-AFELDEA-TVVAVLPICARLGA 247 (477)
Q Consensus 185 a~~~~~~~~~-~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~m~~~-~~~~~~~-~~~~l~~~~~~~~~ 247 (477)
|++.++.... |+. .....++..... .+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~----------- 237 (765)
T PRK10049 169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ----------- 237 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH-----------
Confidence 8887776665 110 011111221111 1122 4455555555533 1112110 000
Q ss_pred ccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCC---ce-eHHHHHHHHHhcCCchHHHHHHH
Q 042503 248 VDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKN---VV-SWNAMISGLAFNGRGELGVELYE 323 (477)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~ 323 (477)
......+..+...|++++|+..|+++.+.+ +. ....+..++...|++++|..+|+
T Consensus 238 ---------------------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 238 ---------------------RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred ---------------------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 000011222334455555555555555421 11 11123445566666666666666
Q ss_pred HHHHcCCCC---CHHHHHHHHHHhhccccHHHHHHHHHHhhhccC----------CCCC---hHHHHHHHHHHHhcCCHH
Q 042503 324 QMIAKGVSP---NKATFVGVLTCCAHAGLVEKARELFASMTGLHS----------IVPN---LEHYGCMVDVLGRSGCVR 387 (477)
Q Consensus 324 ~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~ 387 (477)
++....... .......+..++...|++++|...++.+.+... -.|+ ...+..+...+...|+++
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 655432110 122344444455666666666666666653210 0122 123445566667777777
Q ss_pred HHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 388 EAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 388 ~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+|++.++++ .. +.+...+..++..+...|++++|++.++++++..|+++..+..++..+.+.|++++|..+++++++.
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777777776 22 3344566667777777777777777777777777777777777777777777777777777777654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-20 Score=178.90 Aligned_cols=419 Identities=10% Similarity=-0.015 Sum_probs=299.5
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCC
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGP 80 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 80 (477)
..-..+...|+++.|...++..++.. |++..|..+..+|.+.|++++|++.++...+ .+..+|..+..++...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 34556778899999999999988765 6778899999999999999999999998776 345688999999999999
Q ss_pred CchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcc
Q 042503 81 SEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDE 160 (477)
Q Consensus 81 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (477)
+++|+.-|......+ ..+......++..... ..+........+... ++...+..+.. |...........-++.
T Consensus 210 ~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 999999888776542 1111111122221111 122333333333221 22222222222 2222222222222222
Q ss_pred cCCCch---HHhHHHHHH---HHhcCChHHHHHHHHhcCCC------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 042503 161 MSHRDV---IVRNLMIHG---FCKKGDVDKGLYLFREMRER------SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAF 228 (477)
Q Consensus 161 ~~~~~~---~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 228 (477)
..+.+. ..+..+... ....+++++|.+.|++..+. ....|+.+...+...|++++|+..|++.....
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~- 361 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD- 361 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 211111 111111111 12357899999999987742 34568888889999999999999999988763
Q ss_pred CCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CceeHHHH
Q 042503 229 ELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-NVVSWNAM 305 (477)
Q Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l 305 (477)
+-+...|..+...+...|+++.|...++.+.+.. |.+..++..+...+...|++++|...|++..+ | +...+..+
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 2235678888888999999999999999999887 78889999999999999999999999998875 3 44567778
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCC-CC---Ch-HHHHHHHHHH
Q 042503 306 ISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSI-VP---NL-EHYGCMVDVL 380 (477)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~-~~~~~l~~~~ 380 (477)
..++.+.|++++|+..+++..... +.+...++.+..++...|++++|+..|++..+...- .+ +. ..++.....+
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 888999999999999999998764 556888999999999999999999999998742210 01 11 1122223334
Q ss_pred HhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 381 GRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 381 ~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
...|++++|.+++++. ...|+. ..+..++..+.+.|++++|...|+++.++.+..
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 4579999999999997 556655 578889999999999999999999999988753
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-20 Score=178.26 Aligned_cols=328 Identities=13% Similarity=0.039 Sum_probs=228.4
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCCh
Q 042503 103 FAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDV 182 (477)
Q Consensus 103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 182 (477)
...++..+.+.|+++.|..+++.++...+.+ ......++.+....|++++|...++++...+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~----------------- 106 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN----------------- 106 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-----------------
Confidence 3444455555566666666665555543332 2223333333344455555555444443300
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhC
Q 042503 183 DKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSG 262 (477)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (477)
..+...+..+...+...|++++|...++++.... +.+...+..+...+...|+++.|...++.+....
T Consensus 107 -----------P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 107 -----------VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred -----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 0233345555666666666666666666665542 2234455555666666666666666666665554
Q ss_pred CccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCC----ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHH
Q 042503 263 LYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKN----VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFV 338 (477)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 338 (477)
|.+...+..+ ..+...|++++|...++.+.+.+ ...+..+..++...|++++|+..++++.+.. +.+...+.
T Consensus 175 --P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 175 --PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred --CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 3444444333 34677788888888888765532 2234445677889999999999999999875 56778888
Q ss_pred HHHHHhhccccHHH----HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHH
Q 042503 339 GVLTCCAHAGLVEK----ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSC 412 (477)
Q Consensus 339 ~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 412 (477)
.+...+...|++++ |...|+++.+. .+.+...+..+...+.+.|++++|+..+++. ...|+ ...+..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 89999999999885 89999999843 2556778999999999999999999999998 55555 46778888999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+.|++++|...++++.+..|.++..+..++.++...|++++|...+++.++..
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999887777778899999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-21 Score=175.02 Aligned_cols=282 Identities=12% Similarity=0.110 Sum_probs=137.6
Q ss_pred HHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCc---chHHHHHHHHHHhc
Q 042503 72 IKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERF---GSIRIGVVELYTSC 148 (477)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 148 (477)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.++..+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334455666777777777776643 23444566666666666666666666666655322111 12344555555555
Q ss_pred CChhhHHHHhcccCC---CchHHhHHHHHHHHhcCChHHHHHHHHhcCCC--C------hhhHHHHHHHHHhcCChhHHH
Q 042503 149 GQMDDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRER--S------VVSWNLMISSLGKSGRDSEAL 217 (477)
Q Consensus 149 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~ 217 (477)
|++++|..+|+++.+ .+..++..++..+.+.|++++|.+.++.+.+. + ...+..+...+...|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 555555555555543 23334444444444444444444444444321 0 012233344444455555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-
Q 042503 218 RLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR- 296 (477)
Q Consensus 218 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 296 (477)
..|+++.+ .. +.+...+..++..+.+.|++++|.+.|+++.+
T Consensus 201 ~~~~~al~-----------------------------------~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 201 ALLKKALA-----------------------------------AD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHh-----------------------------------HC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55555443 32 33333344444444444444444444444432
Q ss_pred -CC--ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHH
Q 042503 297 -KN--VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHY 373 (477)
Q Consensus 297 -~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 373 (477)
|+ ..+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~ 318 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGF 318 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHH
Confidence 11 123444455555555555555555555543 233333445555555555555555555554421 3444455
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHhc
Q 042503 374 GCMVDVLGR---SGCVREAYDLIRSM 396 (477)
Q Consensus 374 ~~l~~~~~~---~g~~~~A~~~~~~~ 396 (477)
+.++..+.. .|+.++++.+++++
T Consensus 319 ~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 319 HRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHhhhccCCccchhHHHHHHHH
Confidence 444444332 33555555555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-18 Score=171.62 Aligned_cols=407 Identities=9% Similarity=-0.018 Sum_probs=276.7
Q ss_pred HHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcC
Q 042503 3 RKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNG 79 (477)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 79 (477)
...+......|+.++|..++....... +.+...+..+..++...|++++|..+|++... .+...+..++..+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 345677888999999999999988743 44556788999999999999999999999654 45667888889999999
Q ss_pred CCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhc
Q 042503 80 PSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFD 159 (477)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (477)
++++|...+++..+.. +.+.. +..+..++...|+.++|...++++++..+. +...+..+..++...|..+.|++.++
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999998863 44555 888888899999999999999999997554 55666678888889999999999999
Q ss_pred ccCC-Cch------HHhHHHHHHHHh-----cCCh---HHHHHHHHhcCC-----CChh-hH----HHHHHHHHhcCChh
Q 042503 160 EMSH-RDV------IVRNLMIHGFCK-----KGDV---DKGLYLFREMRE-----RSVV-SW----NLMISSLGKSGRDS 214 (477)
Q Consensus 160 ~~~~-~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~-----~~~~-~~----~~l~~~~~~~~~~~ 214 (477)
.... |+. .....+++.... .+++ ++|++.++.+.+ |+.. .+ ...+.++...|+++
T Consensus 175 ~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~ 254 (765)
T PRK10049 175 DANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYK 254 (765)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 8776 221 112223332221 2233 678887777763 2221 11 11134556779999
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccch----hHHHHHHHHHHHhcCChHHHHH
Q 042503 215 EALRLFHEMRDQAFE-LDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKV----VSVGNALVDFYCKCGILDTARN 289 (477)
Q Consensus 215 ~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~ 289 (477)
+|+..|+.+.+.+.+ |+. ....+...+...|++++|...++.+.+.. +.+ ......+..++...|++++|..
T Consensus 255 eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 255 DVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred HHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 999999999887532 322 11224556777777777777777766544 211 2233444445555555555555
Q ss_pred HhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhccccHHHHHHHHHHhhhccCC
Q 042503 290 VFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN---KATFVGVLTCCAHAGLVEKARELFASMTGLHSI 366 (477)
Q Consensus 290 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (477)
+++.+...++.....+ . ...-.|+ ...+..+...+...|++++|++.++++... .
T Consensus 332 ~l~~~~~~~P~~~~~~-----------------~---~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~ 389 (765)
T PRK10049 332 VTAHTINNSPPFLRLY-----------------G---SPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--A 389 (765)
T ss_pred HHHHHhhcCCceEeec-----------------C---CCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 5555443211100000 0 0000223 123445666677778888888888887732 3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 367 VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
|.+...+..+...+...|++++|++.+++. ...|+ ...+...+..+...|++++|+.+++++++..|+++.+
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 555667777778888888888888888877 55555 4566666667778888888888888888888876643
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-19 Score=167.34 Aligned_cols=444 Identities=13% Similarity=0.084 Sum_probs=299.2
Q ss_pred CchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCC------CcchHHHHHHHHHhcCCCchHHHH
Q 042503 14 TRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNP------SVLLFNSMIKAYSLNGPSEEPVKL 87 (477)
Q Consensus 14 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~ 87 (477)
.+..+.+.+....... +.+|.+.+.|..-|.-.|+++.+..+...+... -..+|-.+.++|-..|++++|...
T Consensus 251 s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 3344444444444443 345666777777777777777777776665541 123566677777777777777777
Q ss_pred HHHHHhCCCCCCcc--cHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcC----ChhhHHHHhccc
Q 042503 88 FALLKNLGIWPDEY--TFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCG----QMDDGMKVFDEM 161 (477)
Q Consensus 88 ~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~ 161 (477)
|.+..+.. |+.. .+.-+.+.+++.|+++.+...|+.+.+..+ .+..+...|...|...+ ..+.|..++...
T Consensus 330 Y~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 330 YMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 76666543 4433 334456677777777777777777776532 24455555666666554 455666666655
Q ss_pred CC---CchHHhHHHHHHHHhcCChHHHHHHHHhcC--------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHc---C
Q 042503 162 SH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMR--------ERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQ---A 227 (477)
Q Consensus 162 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~ 227 (477)
.+ .|...|-.+...+...+- -.++..|.... ...+...|.+...+...|+++.|...|...... .
T Consensus 407 ~~~~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 407 LEQTPVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred HhcccccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 54 344455555544443332 22244444332 245567788888888888888888888887654 2
Q ss_pred CCCCH------HHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CC
Q 042503 228 FELDE------ATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KN 298 (477)
Q Consensus 228 ~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~ 298 (477)
..+|. .+--.+..+.-..++.+.|.+.+..+.+.. |.-+..|..++.+....+...+|...+..+.. .+
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~n 563 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSN 563 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCC
Confidence 23333 123345556666778888888888888887 66666666666555566778888888887764 56
Q ss_pred ceeHHHHHHHHHhcCCchHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhc------------cccHHHHHHHHHHhhhccC
Q 042503 299 VVSWNAMISGLAFNGRGELGVELYEQMIAK-GVSPNKATFVGVLTCCAH------------AGLVEKARELFASMTGLHS 365 (477)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~ 365 (477)
+..++.+...+.+...+..|..-|....+. ...+|..+...|.+.|.. .+..++|+++|.++.. .
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~ 641 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--N 641 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--c
Confidence 667777777888888887777766665543 223566666666665542 2457788888888873 3
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCchHHH
Q 042503 366 IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE--PWNSGNYVL 441 (477)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~ 441 (477)
.|.|...-|.+.-+++..|++.+|..+|.+. .......+|..+..+|...|++-.|+++|+...+.. .+++.....
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 4667788888888999999999999999888 333455788889999999999999999999987654 456778899
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 442 LSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
|++++.+.|++.+|.+.+...+...
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999999999999988887776653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-18 Score=163.66 Aligned_cols=416 Identities=10% Similarity=-0.015 Sum_probs=218.4
Q ss_pred HhhcCChhHHHHHhccCCC--CCcc-hHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcc-cHHHH--HHHhhccCCch
Q 042503 44 CGTLNEIKYATKIFNQMRN--PSVL-LFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEY-TFAPL--LKACLGVGDLR 117 (477)
Q Consensus 44 ~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~~~~~ 117 (477)
..+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++... |+.. .+..+ ...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCHH
Confidence 4455666666666666654 3321 122555555666666666666666651 2222 22222 33555556666
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--CchHHhHHHHHHHHhcCChHHHHHHHHhcCC-
Q 042503 118 VGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE- 194 (477)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 194 (477)
+|.++++++++..+. +...+..++..+...++.++|++.++.+.. |+...+..++..+...++..+|++.++++.+
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 666666666665443 344455556666666666666666666655 3322332222222223444446666666654
Q ss_pred -C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH------HHHHHHHh-----hccCccc---chHHHHHHH
Q 042503 195 -R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEAT------VVAVLPIC-----ARLGAVD---IGQWIHSYA 258 (477)
Q Consensus 195 -~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------~~~l~~~~-----~~~~~~~---~a~~~~~~~ 258 (477)
| +...+..+..++.+.|-...|.++..+-... +.+...- ....++.- ...+++. .+..-++.+
T Consensus 199 ~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l 277 (822)
T PRK14574 199 APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNL 277 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 3 3344555556666666666666555432211 1111100 01111000 0111222 222223333
Q ss_pred HHhCC-ccch----hHHHHHHHHHHHhcCChHHHHHHhccCCCCC----ceeHHHHHHHHHhcCCchHHHHHHHHHHHcC
Q 042503 259 ESSGL-YRKV----VSVGNALVDFYCKCGILDTARNVFKEIPRKN----VVSWNAMISGLAFNGRGELGVELYEQMIAKG 329 (477)
Q Consensus 259 ~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 329 (477)
...-. .|+. ..+..-.+-++...|++.++++.|+.+..+. ..+-..+..+|...+++++|..+|+.+....
T Consensus 278 ~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~ 357 (822)
T PRK14574 278 LTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSD 357 (822)
T ss_pred HhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcc
Confidence 32110 0211 1111233445566677777777777766422 1234455666777777777777777765532
Q ss_pred -----CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCC----------CCCh---HHHHHHHHHHHhcCCHHHHHH
Q 042503 330 -----VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSI----------VPNL---EHYGCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 330 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~---~~~~~l~~~~~~~g~~~~A~~ 391 (477)
.+++......|..++...+++++|..+++.+.+.... .|+. ..+..++..+...|++.+|++
T Consensus 358 ~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~ 437 (822)
T PRK14574 358 GKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQK 437 (822)
T ss_pred ccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1223333456666677777777777777776631110 1111 223345556667777777777
Q ss_pred HHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 392 LIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 392 ~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.++++ .-+-|......+...+...|.+.+|++.++.+..++|.+..+....+..+...|++.+|..+.+.+.+.
T Consensus 438 ~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 438 KLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 77776 223355666667777777777777777777777777777777777777777777777777776666554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-18 Score=157.81 Aligned_cols=456 Identities=13% Similarity=0.061 Sum_probs=252.9
Q ss_pred HHHHHHHhh--cCCCchhHhHHHHHHHHhhc--ccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHH--
Q 042503 2 ERKILRLLH--GRNTRTHLTQIHAHFLRHKL--HQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAY-- 75 (477)
Q Consensus 2 ~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~-- 75 (477)
+.-|.++|. ..+++..|..+|...+...+ +||+. ..+..++.+.|+.+.|+..|+...+.|+...++++...
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~ 242 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEV 242 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 445556665 55788899999998776653 44443 34446677888888888888887774444333333221
Q ss_pred -Hhc---CCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhccc--CcchHHHHHHHHHHhcC
Q 042503 76 -SLN---GPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFE--RFGSIRIGVVELYTSCG 149 (477)
Q Consensus 76 -~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 149 (477)
... ..+..++.++...-..+ .-++...+.|.+.+.-.|++..+..+...++..... .-...|-.+.++|...|
T Consensus 243 ~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 243 DLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred HHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 122 23344555554444432 446777777888888888888888888877765321 12334666788888888
Q ss_pred ChhhHHHHhcccCC--Cch--HHhHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcC----ChhHHHH
Q 042503 150 QMDDGMKVFDEMSH--RDV--IVRNLMIHGFCKKGDVDKGLYLFREMRE--R-SVVSWNLMISSLGKSG----RDSEALR 218 (477)
Q Consensus 150 ~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~----~~~~a~~ 218 (477)
++++|...|.+..+ ++. ..+..+...|.+.|+++.+...|+.+.. | +..+...|...|...+ ..+.|..
T Consensus 322 d~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~ 401 (1018)
T KOG2002|consen 322 DFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASN 401 (1018)
T ss_pred cHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHH
Confidence 88888888877665 332 3345667788888888888888887764 3 3345555555555553 3445555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHH----HHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccC
Q 042503 219 LFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYA----ESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEI 294 (477)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (477)
++.+..+.- +.|...|..+...+....-+.. ...+..+ ...+. +..+...+.+...+...|++..|...|...
T Consensus 402 ~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~-~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 402 VLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGK-QIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCC-CCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 555544432 3455556555555544433332 4444333 33444 455556677777777777777777776654
Q ss_pred CC-------CCce------eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 295 PR-------KNVV------SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 295 ~~-------~~~~------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
.. ++.. +-..+....-..++++.|...|+.+.... |.=...|..++...-..+...+|...+..+.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 42 1111 11122333334456666666666666542 2122233333322223345555555555555
Q ss_pred hccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCCHHHHHHHHHHHHH------------cCChHHHHHHH
Q 042503 362 GLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM----SIRPNAAIWGSLLSSCRT------------HGHVELAEHAV 425 (477)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~ 425 (477)
.. ...++..+..+...+.+...+..|.+-|+.. ...+|..+...|++.|.+ .+..++|+++|
T Consensus 558 ~~--d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 558 NI--DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred hc--ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 22 2333334444455555555555554433332 223444444445444422 22344555555
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 426 KELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 426 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.++++.+|.|..+-+.++-+++..|++.+|..+|.++++..
T Consensus 636 ~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 636 GKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred HHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-19 Score=150.25 Aligned_cols=442 Identities=12% Similarity=0.100 Sum_probs=293.0
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHH-hHHHHHhhcCChhHHHHHhccCCC--CC------cchHHHHH
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILA-HFVSVCGTLNEIKYATKIFNQMRN--PS------VLLFNSMI 72 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~--~~------~~~~~~l~ 72 (477)
+..|..-+..+....+|+.-++-+++....|+..... .+...+.+..++.+|++.|+.... |+ +...+.+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 4455555555666666777777777766666554332 234566677777777777765443 22 22344555
Q ss_pred HHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccC------------cchHHHH
Q 042503 73 KAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFER------------FGSIRIG 140 (477)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~ 140 (477)
-.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|..++.....| +....+.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 5667777788888777777764 3665554444545555677777777777776533222 2222221
Q ss_pred HH-----HHHHhcC--ChhhHHH----HhcccCCCchH-------------HhH--------HHHHHHHhcCChHHHHHH
Q 042503 141 VV-----ELYTSCG--QMDDGMK----VFDEMSHRDVI-------------VRN--------LMIHGFCKKGDVDKGLYL 188 (477)
Q Consensus 141 l~-----~~~~~~g--~~~~A~~----~~~~~~~~~~~-------------~~~--------~l~~~~~~~~~~~~a~~~ 188 (477)
.+ .-.-+.+ +.++++- ++.-...|+-. .+. .-...+.+.|+++.|+++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 11 1111111 1222221 11111112210 000 112235667888888877
Q ss_pred HHhcCCCChhhHHHHH-----HHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhC
Q 042503 189 FREMRERSVVSWNLMI-----SSLGK-SGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSG 262 (477)
Q Consensus 189 ~~~~~~~~~~~~~~l~-----~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (477)
+.-..+.|..+-.+.. --|.+ -.++..|.++-+...... .-+......-.+.....|++++|...++++....
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd 520 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNND 520 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence 7777654443322211 11222 234666666555544332 2233333333344556789999999999998776
Q ss_pred CccchhHHHHHHHHHHHhcCChHHHHHHhccCC---CCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHH
Q 042503 263 LYRKVVSVGNALVDFYCKCGILDTARNVFKEIP---RKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVG 339 (477)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 339 (477)
.........+.-.+...|++++|++.|-++. ..+......+...|-...+...|++++.+.... ++.|+..++.
T Consensus 521 --asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilsk 597 (840)
T KOG2003|consen 521 --ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSK 597 (840)
T ss_pred --hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHH
Confidence 4444444556667888999999999988764 367777778888888899999999999887765 5778899999
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHH-HcCC
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCR-THGH 417 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~~~ 417 (477)
|...|-+.|+-..|.+.+-.-- .-++.+..+...|..-|....-+++++.+|++. -++|+..-|..|+..|. +.|+
T Consensus 598 l~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 9999999999999998876554 346788999999999999999999999999999 77999999999887765 5899
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 418 VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
+++|.++|+...+..|.+.+++..|++.....|.
T Consensus 676 yqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 676 YQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999999999888774
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-17 Score=156.39 Aligned_cols=387 Identities=15% Similarity=0.050 Sum_probs=282.2
Q ss_pred HHHHhcCCCchHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCCh
Q 042503 73 KAYSLNGPSEEPVKLFALLKNLGIWPDEY-TFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQM 151 (477)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (477)
-...+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|+..+++.+.. -.........++..+...|++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCH
Confidence 3557899999999999999985 35542 2237888888889999999999998711 111222333346688899999
Q ss_pred hhHHHHhcccCC---CchHHhHHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042503 152 DDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE--RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQ 226 (477)
Q Consensus 152 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 226 (477)
++|+++|+++.+ .+...+..++..+...++.++|++.++++.. |+...+-.++..+...++..+|+..++++.+.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999999987 3456677888899999999999999999987 44444434444444466676699999999987
Q ss_pred CCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHH------HHHHHHH---H--hcCC---hHHHHHHhc
Q 042503 227 AFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVG------NALVDFY---C--KCGI---LDTARNVFK 292 (477)
Q Consensus 227 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~~~---~~~a~~~~~ 292 (477)
. +-+...+..+..+..+.|-...|.++...-...-. +....+ ...++.- . ...+ .+.|+.-++
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~--~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVS--AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccC--HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 4 44667778888888999988888877665332211 111000 1111110 0 1112 334444444
Q ss_pred cCCC-----CCce-eH-H---HHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh
Q 042503 293 EIPR-----KNVV-SW-N---AMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG 362 (477)
Q Consensus 293 ~~~~-----~~~~-~~-~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (477)
.+.. |... .| . =.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|+.+++.+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 4432 2211 11 1 23456788999999999999999988765666888999999999999999999999874
Q ss_pred ccC----CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCC-------------CCH---HHHHHHHHHHHHcCChHHH
Q 042503 363 LHS----IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIR-------------PNA---AIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 363 ~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-------------p~~---~~~~~l~~~~~~~~~~~~a 421 (477)
..+ .+++......|.-+|...+++++|..+++++ ... |++ ..+..++..+...|+..+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 332 2334444678899999999999999999998 212 222 2345567778899999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++.++++....|.|+.....++.++...|.+.+|.+.++.....
T Consensus 436 e~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 436 QKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999776654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.4e-15 Score=133.60 Aligned_cols=451 Identities=13% Similarity=0.084 Sum_probs=282.1
Q ss_pred hhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHH
Q 042503 9 LHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPV 85 (477)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 85 (477)
.....+.+.|.-++....+.= +.+...+. ++++..-++.|.+++++.++ .+...|.+-...--.+|+.+...
T Consensus 386 AVelE~~~darilL~rAvecc-p~s~dLwl----AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ 460 (913)
T KOG0495|consen 386 AVELEEPEDARILLERAVECC-PQSMDLWL----ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVE 460 (913)
T ss_pred HHhccChHHHHHHHHHHHHhc-cchHHHHH----HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHH
Confidence 334444444555555554442 22333332 33444445555555554443 44555555554445556665555
Q ss_pred HHHHH----HHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccC--cchHHHHHHHHHHhcCChhhHHHHhc
Q 042503 86 KLFAL----LKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFER--FGSIRIGVVELYTSCGQMDDGMKVFD 159 (477)
Q Consensus 86 ~~~~~----~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (477)
+++.+ +...|+..+...|..=...|-..|..-.+..+....+..|++. -..+|..-.+.|.+.+.++-|..+|.
T Consensus 461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya 540 (913)
T KOG0495|consen 461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA 540 (913)
T ss_pred HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence 55543 2334555555555555555555555555555555555555442 12345555555555555555555555
Q ss_pred ccCC---CchH----------------------------------HhHHHHHHHHhcCChHHHHHHHHhcCC--C-Chhh
Q 042503 160 EMSH---RDVI----------------------------------VRNLMIHGFCKKGDVDKGLYLFREMRE--R-SVVS 199 (477)
Q Consensus 160 ~~~~---~~~~----------------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~ 199 (477)
...+ .+.. .|-.....+-..|++..|..++....+ | +...
T Consensus 541 ~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 541 HALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred HHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 4443 1222 233333444445666666666665544 2 3335
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHH
Q 042503 200 WNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC 279 (477)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (477)
|-.-+.......+++.|..+|.+... ..|+...|..-+..---.+..++|.++++...+.- |.....|-.+.+.+-
T Consensus 621 wlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhHHHH
Confidence 55555666666677777777766554 34566666555555555667777777777777665 666777777777777
Q ss_pred hcCChHHHHHHhccCCC--C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHH
Q 042503 280 KCGILDTARNVFKEIPR--K-NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (477)
+.++.+.|...|..-.+ | .+..|-.+...--+.|+.-.|..++++..-.+ +-+...|...++.-.+.|..+.|..+
T Consensus 697 ~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777766554 3 33456666565566677777777777777665 55677777777777777777777777
Q ss_pred HHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 357 FASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
..+..+ .++.+...|..-|....+.++-......+++. ..|+.....+...+....+++.|.+.|.++++.+|++.
T Consensus 776 makALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 776 MAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 777763 34566666776676666666666666666665 34566777788888889999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCCcc
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSL 475 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~ 475 (477)
++|..+...+.+.|.-++-.+++.+.... .|.-|-.|
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W 888 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELW 888 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHH
Confidence 99999999999999988888888887664 45555555
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-14 Score=124.00 Aligned_cols=393 Identities=13% Similarity=0.164 Sum_probs=247.3
Q ss_pred hhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcC--ChhHH-HH-----------------------HhccCCC
Q 042503 9 LHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLN--EIKYA-TK-----------------------IFNQMRN 62 (477)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a-~~-----------------------~~~~~~~ 62 (477)
...+|.+..+.-+++.|.+.|++.++.+...++..-+-.+ ++--| .+ ++-+...
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 4567888999999999999999988888777766543322 11111 11 2222222
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHH
Q 042503 63 PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVV 142 (477)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 142 (477)
.+..+|..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-. ...+++.+|+...+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 455677888888888777788888888777776677777888777664322 2266777777777777777777777
Q ss_pred HHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcC----CCChhhHHHHHHHHHhcCChhH-HH
Q 042503 143 ELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR----ERSVVSWNLMISSLGKSGRDSE-AL 217 (477)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~-a~ 217 (477)
.+..+.|+++.|... |.+++.+|. +|...+|..++..+.+.+++.+ +.
T Consensus 281 ~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred HHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 777777777665532 333444443 3788888888888888877644 45
Q ss_pred HHHHHHHHc----CCC---C-CHHHHHHHHHHhhccCcccchHHHHHHHHHhCC---cc---chhHHHHHHHHHHHhcCC
Q 042503 218 RLFHEMRDQ----AFE---L-DEATVVAVLPICARLGAVDIGQWIHSYAESSGL---YR---KVVSVGNALVDFYCKCGI 283 (477)
Q Consensus 218 ~~~~~m~~~----~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~~~ 283 (477)
.++.+++.. .++ | |...|...+..|.+..+.+.|.++......... .+ .....|..+..+.+....
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 555555432 222 2 455677888888888898888888877654322 11 223345667777778888
Q ss_pred hHHHHHHhccCCC----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc-cH--------
Q 042503 284 LDTARNVFKEIPR----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG-LV-------- 350 (477)
Q Consensus 284 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~-------- 350 (477)
.+.-...|+.+.. |+..+...++++..-.|.++-.-++|.+++..|...+.....-++..+++.. +.
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql 493 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQL 493 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 8888888888765 6667777777888888888888888888888875555444444444444433 11
Q ss_pred H-----HHHHHHHHhhh----ccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHH
Q 042503 351 E-----KARELFASMTG----LHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-------SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 351 ~-----~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~ 414 (477)
. -|..+++.... .....-.....+.+.-.+.+.|+.++|.++|.-. ...|......-++....+
T Consensus 494 ~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 494 QVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 1 11112211110 0011222334455555666777777777666555 122333333344455556
Q ss_pred cCChHHHHHHHHHHHhcC
Q 042503 415 HGHVELAEHAVKELINLE 432 (477)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~ 432 (477)
.++...|..+++-+...+
T Consensus 574 ~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLASAFN 591 (625)
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 666777777777665554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-15 Score=131.08 Aligned_cols=385 Identities=14% Similarity=0.085 Sum_probs=261.0
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhCCCCCC-cccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHH
Q 042503 68 FNSMIKAYSLNGPSEEPVKLFALLKNLGIWPD-EYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYT 146 (477)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (477)
+....+-|.++|.+++|++.|.+.++ ..|+ +..|.....+|...|+++++.+--...++.+++ .+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 44566778899999999999999998 4688 778888888889999999988888777774333 3445666667777
Q ss_pred hcCChhhHHHH------hcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhh------------------
Q 042503 147 SCGQMDDGMKV------FDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVS------------------ 199 (477)
Q Consensus 147 ~~g~~~~A~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~------------------ 199 (477)
..|++++|+.- ++......+ ..++.-..+.--..++.+-+.+-.. |+...
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~---~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASI---EPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchh---HHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 88888887632 111111110 0011100111111222222221111 11111
Q ss_pred -----HHHHHHHHHh--cC---ChhHHHHHHHHHHHcC-CCC-----CHHH----HHHHHH--HhhccCcccchHHHHHH
Q 042503 200 -----WNLMISSLGK--SG---RDSEALRLFHEMRDQA-FEL-----DEAT----VVAVLP--ICARLGAVDIGQWIHSY 257 (477)
Q Consensus 200 -----~~~l~~~~~~--~~---~~~~a~~~~~~m~~~~-~~~-----~~~~----~~~l~~--~~~~~~~~~~a~~~~~~ 257 (477)
...+..++.. .+ .+..|.+.+.+-.... ..+ |... -..++. -+.-.|+.-.+..-|+.
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence 1112111111 11 2333333333211110 011 1111 111111 23446788889999999
Q ss_pred HHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCH
Q 042503 258 AESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNK 334 (477)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 334 (477)
+.+.. +..+..|-.+..+|...++.++....|....+ .|+.+|..-.+...-.+++++|..=|++.++.. +.+.
T Consensus 352 ~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~ 428 (606)
T KOG0547|consen 352 AIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENA 428 (606)
T ss_pred HHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhh
Confidence 99988 56666678888999999999999999988765 567888888888888899999999999999875 5567
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-------HHHH-
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-------AAIW- 405 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------~~~~- 405 (477)
..|..+.-+..+.+.+++++..|++.++ .+|..+.+|+.....+..++++++|.+.|+.. .+.|+ ...+
T Consensus 429 ~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV 506 (606)
T KOG0547|consen 429 YAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLV 506 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhh
Confidence 7777777777889999999999999984 45777889999999999999999999999988 44443 2111
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
+.-+-.+.-.+++..|+.+++++++++|....++..|+....+.|+.++|+++|++-.
T Consensus 507 ~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 507 HKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111122234899999999999999999999999999999999999999999999764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-18 Score=150.04 Aligned_cols=258 Identities=14% Similarity=0.110 Sum_probs=114.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHh
Q 042503 202 LMISSLGKSGRDSEALRLFHEMRDQAFELDEAT-VVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK 280 (477)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (477)
.+...+.+.|++++|+++++.......+|+... +..+...+...++++.|...++.+...+ +.++..+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-cc
Confidence 446677788888888888866544432344434 4445556667888888888888888877 5567777777777 78
Q ss_pred cCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhccccHHHHHHHH
Q 042503 281 CGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKG-VSPNKATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
.+++++|..+++..-+ +++..+..++..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.++|+..+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8999999998887644 566778888889999999999999999987633 3567778888999999999999999999
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 358 ASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
++..+.. |.|......++..+...|+.+++.++++.. ..+.|+..+..+..++...|++++|...++++.+..|.|
T Consensus 170 ~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 170 RKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9998532 446778889999999999999988888777 224555678899999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+.....++.++...|+.++|.++.+++.+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 99999999999999999999999887754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-14 Score=126.34 Aligned_cols=411 Identities=12% Similarity=0.070 Sum_probs=327.8
Q ss_pred ChhHHHHHhccCCC--CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHH
Q 042503 49 EIKYATKIFNQMRN--PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEI 126 (477)
Q Consensus 49 ~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 126 (477)
+.++|+.++....+ |.. .-|.-++++..-++.|..++++..+. ++.+...|.+....--..|+.+...+++++-
T Consensus 391 ~~~darilL~rAveccp~s---~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 391 EPEDARILLERAVECCPQS---MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred ChHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 33445555554444 211 23444667778889999999999875 6778888888887778889999888887654
Q ss_pred H----HhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC------CchHHhHHHHHHHHhcCChHHHHHHHHhcCC--
Q 042503 127 I----RSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE-- 194 (477)
Q Consensus 127 ~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 194 (477)
+ ..|+..+...|..=...|-..|..-.+..+...... .-..+|..-...|.+.+.++-|..+|....+
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 4 468888888888888888888888888777776654 3346888888999999999999999988876
Q ss_pred -CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH
Q 042503 195 -RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA 273 (477)
Q Consensus 195 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 273 (477)
.+...|...+..--..|..+....+|++.... ++-....+.......-..|++..|..++..+.+.. |.+..+|-+
T Consensus 547 p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwla 623 (913)
T KOG0495|consen 547 PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLA 623 (913)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 34456777666666788999999999999887 34455666666777788899999999999999998 789999999
Q ss_pred HHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH
Q 042503 274 LVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE 351 (477)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (477)
-+.....+..++.|..+|.+... +....|..-+....-.++.++|.+++++..+. ++.-...|..+.+.+.+.++.+
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999998765 66677777777777789999999999998876 3444567888888999999999
Q ss_pred HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 042503 352 KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 429 (477)
.|...|..-. ..++-.+..|-.|.+.--+.|.+-+|..++++. ..+.+...|...++.-.+.|+.+.|..++.+++
T Consensus 703 ~aR~aY~~G~--k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 703 MAREAYLQGT--KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHhcc--ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999887665 334666778888888888999999999999998 445567889999999999999999999988887
Q ss_pred hcCCCC------------------------------CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 042503 430 NLEPWN------------------------------SGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKK 469 (477)
Q Consensus 430 ~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (477)
+..|.+ +......+..+....++++|.+.|.+.+..+...
T Consensus 781 Qecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 781 QECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 655544 6677778888888889999999999988776433
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-15 Score=137.84 Aligned_cols=358 Identities=16% Similarity=0.154 Sum_probs=225.8
Q ss_pred HHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhccc---CCCchHHhHHHHHHHHhcCChH
Q 042503 107 LKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEM---SHRDVIVRNLMIHGFCKKGDVD 183 (477)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 183 (477)
.+.+...|++++|..++.++++..+. +...|-.|..+|-..|+.+++...+-.. ...|...|..+.....+.|.++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 33444558888888888888887544 6677888888888888888887655433 3356677878888888888888
Q ss_pred HHHHHHHhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH----HHHHHhhccCcccchHHHHH
Q 042503 184 KGLYLFREMRER---SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVV----AVLPICARLGAVDIGQWIHS 256 (477)
Q Consensus 184 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~ 256 (477)
.|.-.|.+..+. +...+---+..|-+.|+...|...|.++.....+.|..-+. .+++.+...++.+.|.+.+.
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888887762 33344445667778888888888888887764322222222 23334444444455555555
Q ss_pred HHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 042503 257 YAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSP 332 (477)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 332 (477)
.....+....+...++.++..|.+...++.|......... +|..-|..- ..++ .....++. ...+..+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~-~~~~~~~~--~~~~~s~ 376 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRR-EEPNALCE--VGKELSY 376 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcc-cccccccc--CCCCCCc
Confidence 5544222133333334455555555555544443333221 111111000 0000 00000000 0012233
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC--CCCHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHS--IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI--RPNAAIWGS 407 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~p~~~~~~~ 407 (477)
+... ..++-++.+.+..+....+..... ... ...+...|.-+..+|...|++.+|+++|..+ .. ..+...|..
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~ 454 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK 454 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence 3333 122333444444444444444444 233 3345677888999999999999999999999 22 234568999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCCcc
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSL 475 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~ 475 (477)
++.+|...|.+++|.+.|++++...|++.++..+|+..|.+.|+.++|.+.++.+...+.+.-++++|
T Consensus 455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999999999999999999999999999999999999999999987555444566665
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.8e-14 Score=120.08 Aligned_cols=411 Identities=10% Similarity=0.088 Sum_probs=265.8
Q ss_pred hhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCCchhHH
Q 042503 45 GTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEY-TFAPLLKACLGVGDLRVGQ 120 (477)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~ 120 (477)
..++++..|+++|+.... .+...|-.-+..-.++.....|..+++..... -|... .|-..+-.--..|+...|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 345566677777777665 55566777777777777777788887777663 34332 2223333334567777888
Q ss_pred HHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--CchHHhHHHHHHHHhcCChHHHHHHHHhcCC----
Q 042503 121 CVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---- 194 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 194 (477)
++|+.-.+ ..|+...|++.+..-.+....+.|..++++..- |++.+|--..+--.++|.+..|.++|+...+
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 88777665 567777888888777777788888888877543 7777777777777777888888777777664
Q ss_pred --CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCcccchHHH--------HHHHHHhC
Q 042503 195 --RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELD--EATVVAVLPICARLGAVDIGQWI--------HSYAESSG 262 (477)
Q Consensus 195 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~ 262 (477)
.+...+.+....-.++..++.|.-+|+-.++. ++-+ ...|.....---+-|+....... ++..++.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 12234555555555667777777777776665 2222 23344444333344554433322 34455555
Q ss_pred CccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc-----eeHHHHH----H----HHHhcCCchHHHHHHHHHHHcC
Q 042503 263 LYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV-----VSWNAMI----S----GLAFNGRGELGVELYEQMIAKG 329 (477)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~l~----~----~~~~~~~~~~a~~~~~~m~~~~ 329 (477)
|.+-.+|--.+..-...|+.+...++|++....-+ ..|...| + .-....+.+.+.++|+..++.
T Consensus 319 --p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l- 395 (677)
T KOG1915|consen 319 --PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL- 395 (677)
T ss_pred --CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-
Confidence 67777777777777777888888888877654211 1122111 1 112456777777888777763
Q ss_pred CCCCHHHHHHHHHHh----hccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHH
Q 042503 330 VSPNKATFVGVLTCC----AHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAA 403 (477)
Q Consensus 330 ~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 403 (477)
+|-..+||.-+--.| .++.++..|.+++.... |.-|...+|...|..-.+.++++.+..++++. ...| +..
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~ 472 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCY 472 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhH
Confidence 455566665443333 35567778888887776 34677777777777777888888888888877 4444 346
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWN--SGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+|......-...|+.++|..+|+-+++....+ .-.|-.++..-...|.++.|..+++++++..
T Consensus 473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 77777777777788888888888777654222 2356666677777788888888888887653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.4e-15 Score=125.69 Aligned_cols=422 Identities=12% Similarity=0.076 Sum_probs=292.4
Q ss_pred hHHHhHHHHHhhcCChhHHHHHhccCCC----CCcchH-HHHHHHHHhcCCCchHHHHHHHHHhCCCCCCc--c----cH
Q 042503 35 LILAHFVSVCGTLNEIKYATKIFNQMRN----PSVLLF-NSMIKAYSLNGPSEEPVKLFALLKNLGIWPDE--Y----TF 103 (477)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~----~~ 103 (477)
.+...+.+.|.......+|+..|+-+.+ |+.-.. ..+...+.+..++.+|++.|+...+. .|+. . ..
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil 279 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHH
Confidence 3445556667777778888888887766 554322 23556788888999999999887764 3332 2 33
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC----------------CchH
Q 042503 104 APLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH----------------RDVI 167 (477)
Q Consensus 104 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~ 167 (477)
+.+.-.+++.|.++.|...|+...+. .|+..+-..|+-++..-|+.++..+.|..|.. |+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 34444578889999999999998874 45666666666677778888888888887754 2333
Q ss_pred HhHHH-----HHHHHhcC--ChHHHHHHHHhcCC----CChh-------------hHH--------HHHHHHHhcCChhH
Q 042503 168 VRNLM-----IHGFCKKG--DVDKGLYLFREMRE----RSVV-------------SWN--------LMISSLGKSGRDSE 215 (477)
Q Consensus 168 ~~~~l-----~~~~~~~~--~~~~a~~~~~~~~~----~~~~-------------~~~--------~l~~~~~~~~~~~~ 215 (477)
..+.- ++-.-+.+ +.++++-.--++.. |+-. .+. .-...+.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 22222 22222222 12222222222222 2211 011 11235678999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH--HHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhcc
Q 042503 216 ALRLFHEMRDQAFELDEATVVAV--LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKE 293 (477)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (477)
|+++++-+.+..-+.....-+.+ +.-+.-..++..|.++-+.++... ..++.....-.+.....|++++|.+.+++
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999888766433322222222 222223456777888877777666 55555555556666778999999999999
Q ss_pred CCCCCceeHHHHHH---HHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCCh
Q 042503 294 IPRKNVVSWNAMIS---GLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNL 370 (477)
Q Consensus 294 ~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (477)
....|...-.++.. .+-..|+.++|+..|-++... +..+...+..+...|....+...|++++.+.. .-++.|+
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDP 592 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCH
Confidence 98877655444433 456789999999999888764 25577788888999999999999999998876 4467788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE 448 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (477)
.....|...|-+.|+-..|.+..-+. -++.+..+..-|...|....-.++++.+|+++.-+.|....--..++.++.+
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 89999999999999999999887665 4456778888888888888889999999999998899644444455566778
Q ss_pred cCCchHHHHHHHHHHhC
Q 042503 449 GGRWDDAETLRMWMREN 465 (477)
Q Consensus 449 ~g~~~~A~~~~~~~~~~ 465 (477)
.|++.+|..+++....+
T Consensus 673 sgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 99999999999987654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.8e-14 Score=129.64 Aligned_cols=418 Identities=14% Similarity=0.157 Sum_probs=279.3
Q ss_pred hhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHH
Q 042503 45 GTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQC 121 (477)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 121 (477)
.-.|+.++|.+++.++.+ .+...|..|...|-..|+.+++...+-..-..+ +-|...|..+.......|++++|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 334888888888887765 445678888888888888888877665444332 4466777777777778888888888
Q ss_pred HHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--C--c----hHHhHHHHHHHHhcCChHHHHHHHHhcC
Q 042503 122 VHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--R--D----VIVRNLMIHGFCKKGDVDKGLYLFREMR 193 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~--~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 193 (477)
+|.+.++..++ +...+-.-+..|-+.|+...|..-|.++.. | | ...-...++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888876543 444555566777788888888887777765 2 1 1122234566667777788888887766
Q ss_pred C-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHH
Q 042503 194 E-----RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAF---------------------------ELDEATVVAVLPI 241 (477)
Q Consensus 194 ~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---------------------------~~~~~~~~~l~~~ 241 (477)
. -+...++.++..+.+...++.+......+..... .++... ..+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 4 2445678888888888888888888877766221 222222 122334
Q ss_pred hhccCcccchHHHHHHHHHhCC-ccchhHHHHHHHHHHHhcCChHHHHHHhccCCC----CCceeHHHHHHHHHhcCCch
Q 042503 242 CARLGAVDIGQWIHSYAESSGL-YRKVVSVGNALVDFYCKCGILDTARNVFKEIPR----KNVVSWNAMISGLAFNGRGE 316 (477)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 316 (477)
+......+....+......... +..++..+.-+..+|...|++.+|+.+|..+.. .+...|-.+..+|...|.++
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 4556666777777777777663 156677888899999999999999999998875 35668899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh-------ccCCCCChHHHHHHHHHHHhcCCHHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG-------LHSIVPNLEHYGCMVDVLGRSGCVREA 389 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (477)
.|...|+..+... |.+...-..|...+.+.|+.++|.+++..+.. ..+..|+....-.....+.+.|+.++-
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 9999999998874 55666777788888899999999999988641 122344444444556677788887775
Q ss_pred HHHHHhc--------CC-----------------CCCHHHHHHHHHHHHHcCChHHHHHHHHHH-----H---hcCCCC-
Q 042503 390 YDLIRSM--------SI-----------------RPNAAIWGSLLSSCRTHGHVELAEHAVKEL-----I---NLEPWN- 435 (477)
Q Consensus 390 ~~~~~~~--------~~-----------------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----~---~~~p~~- 435 (477)
+.+...+ -+ .-..........+-.+.++.......+..- . .+..++
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 5544333 01 111222333333333333322222222111 1 111111
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...+..++..+.+.|++++|..+...+.+..
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~ 656 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAY 656 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 2456677788899999999999988887653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-13 Score=118.08 Aligned_cols=403 Identities=12% Similarity=0.101 Sum_probs=310.1
Q ss_pred CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHH
Q 042503 64 SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVE 143 (477)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 143 (477)
+...|-....--...+++..|..+|+..+.-+ ..+...|...+..-.+...+..|..+++..+..-+. -...|-..+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHH
Confidence 44455555555566788899999999998854 446666777777778889999999999999886333 3345555555
Q ss_pred HHHhcCChhhHHHHhcccCC--CchHHhHHHHHHHHhcCChHHHHHHHHhcC--CCChhhHHHHHHHHHhcCChhHHHHH
Q 042503 144 LYTSCGQMDDGMKVFDEMSH--RDVIVRNLMIHGFCKKGDVDKGLYLFREMR--ERSVVSWNLMISSLGKSGRDSEALRL 219 (477)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 219 (477)
+--..|++..|.++|++-.+ |+...|.+.++.-.+-+.++.|..++++.. .|++.+|--.+..-.+.|....|..+
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 56678999999999999876 999999999999999999999999999976 49999999999999999999999999
Q ss_pred HHHHHHc-CC-CCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHH-------
Q 042503 220 FHEMRDQ-AF-ELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNV------- 290 (477)
Q Consensus 220 ~~~m~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~------- 290 (477)
|+...+. |- ..+...|.+...--.+...++.|..+++.+.+.-........|..+...--+-|+.....+.
T Consensus 230 yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 230 YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 9987764 11 11223344444444566788999999999998863233366677777666667775554443
Q ss_pred -hccCCCCCc---eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHH-------HHHHHHHHh---hccccHHHHHHH
Q 042503 291 -FKEIPRKNV---VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKA-------TFVGVLTCC---AHAGLVEKAREL 356 (477)
Q Consensus 291 -~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------~~~~l~~~~---~~~~~~~~a~~~ 356 (477)
++++.+.|+ .+|--.+..--..|+.+...++|++.+.. ++|-.. .|..+=.+| ....+.+.+.++
T Consensus 310 qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333334444 45666666667789999999999999875 566321 222222222 356899999999
Q ss_pred HHHhhhccCCCCChHHHHHHHHHH----HhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 357 FASMTGLHSIVPNLEHYGCMVDVL----GRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
++...+ -+|....||.-+-..| .++.++..|.+++-.. |.-|...+|...+..-.+.+++++...+|++.++-
T Consensus 389 yq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 389 YQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999883 4555666666554444 5788999999999988 99999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 042503 432 EPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSP 471 (477)
Q Consensus 432 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 471 (477)
+|.+-.+|...+..-...|+++.|..+|+-.++......|
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp 506 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP 506 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH
Confidence 9999999999999999999999999999999877543334
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-13 Score=121.76 Aligned_cols=453 Identities=10% Similarity=-0.010 Sum_probs=308.1
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhcc--CCCCCcchHHHHHHHHHhcC
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQ--MRNPSVLLFNSMIKAYSLNG 79 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~l~~~~~~~~ 79 (477)
|+++++-+..+.++..|.-+-+.+...+ -||...--+++++.-.|+.+.|..+... +...|..+.......+.+..
T Consensus 19 ~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk 96 (611)
T KOG1173|consen 19 YRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLK 96 (611)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 4667777777888888888888887776 4445555667888888899988888764 34478888888889999999
Q ss_pred CCchHHHHHH----HHHhCC---------CCCCccc----HHHHHH-------HhhccCCchhHHHHHHHHHHhcccCcc
Q 042503 80 PSEEPVKLFA----LLKNLG---------IWPDEYT----FAPLLK-------ACLGVGDLRVGQCVHGEIIRSGFERFG 135 (477)
Q Consensus 80 ~~~~a~~~~~----~~~~~~---------~~p~~~~----~~~l~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~ 135 (477)
+++.|..++. .+..-. +.+|..- -+.-.+ .+....++++|...|.+.+...+. ..
T Consensus 97 ~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~ 175 (611)
T KOG1173|consen 97 EWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CF 175 (611)
T ss_pred HHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hH
Confidence 9999999988 221100 1111111 111111 223344566666666666543322 11
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhcccCC-----CchHHhHHHHHHHHhcCChHHHHHHH--HhcC--CCChhhHHHHHHH
Q 042503 136 SIRIGVVELYTSCGQMDDGMKVFDEMSH-----RDVIVRNLMIHGFCKKGDVDKGLYLF--REMR--ERSVVSWNLMISS 206 (477)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~--~~~~~~~~~l~~~ 206 (477)
..+..++....-. .++-..+++.+.- .+......+.....-...-+.....- +.+. +.++........-
T Consensus 176 Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~ 253 (611)
T KOG1173|consen 176 EAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADR 253 (611)
T ss_pred HHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHH
Confidence 1222222221110 1122222222110 11111111111000000000000000 0000 1344455556677
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHH
Q 042503 207 LGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDT 286 (477)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (477)
+...+++.+...+.+...+.. ++....+..-|.++...|+..+-..+-..+++.. |..+..|-++.-.|...|+..+
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHH
Confidence 788899999999999988774 6677777777778889999888888888888887 8999999999999999999999
Q ss_pred HHHHhccCCCCCc---eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhc
Q 042503 287 ARNVFKEIPRKNV---VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGL 363 (477)
Q Consensus 287 a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 363 (477)
|++.|.+...-|. ..|-.+..+|+-.|..+.|+..+....+.= +-...-+--+.--|.+.++.+.|.+.|.....
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a- 408 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA- 408 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHh-
Confidence 9999998765443 579999999999999999999998877631 21222223344457788999999999999873
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-----CC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 364 HSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-----SI---RP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
-.|.|+...+-+.-.....+.+.+|..+|+.. .+ .+ -.++++.|+.+|.+.+.+++|+..+++++.+.|.
T Consensus 409 -i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k 487 (611)
T KOG1173|consen 409 -IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK 487 (611)
T ss_pred -cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 23567778888888888889999999999877 11 11 4567899999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 435 NSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++.++..++..|...|+++.|+..|.+.+-.
T Consensus 488 ~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 488 DASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred chhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 9999999999999999999999999887653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.6e-14 Score=128.97 Aligned_cols=276 Identities=11% Similarity=0.090 Sum_probs=188.5
Q ss_pred cCChHHHHHHHHhcCCC--Chh-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH--HHHHHhhccCcccchHH
Q 042503 179 KGDVDKGLYLFREMRER--SVV-SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVV--AVLPICARLGAVDIGQW 253 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~~~--~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~ 253 (477)
.|+++.|++.+....+. ++. .|.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 46777777666655442 222 2323334446777777777777777654 44443322 33456677777777777
Q ss_pred HHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc---e--------eHHHHHHHHHhcCCchHHHHHH
Q 042503 254 IHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV---V--------SWNAMISGLAFNGRGELGVELY 322 (477)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~--------~~~~l~~~~~~~~~~~~a~~~~ 322 (477)
.++.+.+.. |.++.+...+...|.+.|++++|.+++..+.+... . .|..++.......+.+...+++
T Consensus 175 ~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 175 GVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777777 77777777888888888888888877777665221 1 2223333333444555666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC
Q 042503 323 EQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN 401 (477)
Q Consensus 323 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 401 (477)
+.+... .+.+......+...+...|+.++|..++++..+ . +|+.... ++.+....++.+++.+.+++. ...|+
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-R--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-c--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 665443 255777788888888899999999999988873 2 4554322 233444568888898888888 44554
Q ss_pred -HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 402 -AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 402 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+..+..+...|.+.|++++|.+.|+++.+..|+ ...+..++.++.+.|+.++|.+++++-...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456778888899999999999999999998886 456778999999999999999988877653
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-13 Score=116.40 Aligned_cols=353 Identities=12% Similarity=0.122 Sum_probs=249.8
Q ss_pred HHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC----CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCc
Q 042503 25 FLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN----PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDE 100 (477)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 100 (477)
+...-.|.++.++..+|..+++-...+.|.+++++... .+..++|.+|.+-.- ..-.+++.+|....+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence 33444567889999999999999999999999998875 566778888766433 2337899999999999999
Q ss_pred ccHHHHHHHhhccCCchh----HHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhh-HHHHhcccCC------------
Q 042503 101 YTFAPLLKACLGVGDLRV----GQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDD-GMKVFDEMSH------------ 163 (477)
Q Consensus 101 ~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~------------ 163 (477)
.|+|.++++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+ |...+.++..
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998875 46788899999999999999999999999888755 3333333321
Q ss_pred CchHHhHHHHHHHHhcCChHHHHHHHHhcCC--------CC---hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 042503 164 RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE--------RS---VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDE 232 (477)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 232 (477)
.|...+..-+..|....+.+-|.++-.-... ++ ..-|..+....++....+.-..+|+.|.-.-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 2444556667777788888888877665543 22 235667788888899999999999999998889999
Q ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhc
Q 042503 233 ATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFN 312 (477)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 312 (477)
.+...++++....+.++-.-+++..+...|. .........++..+++.+- .|+...-..+-.+.++.
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh-t~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGH-TFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAKC 500 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHHHhhh-hhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHH
Confidence 9999999999999999999999999988885 3333333333333333220 12222111121111111
Q ss_pred --CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHH---HHHHHHHhcCCHH
Q 042503 313 --GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYG---CMVDVLGRSGCVR 387 (477)
Q Consensus 313 --~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~ 387 (477)
.-.+.....-.+|.+..++ ....+.++..+.+.|..++|.++|..+.....-.|.....| .+++.-.+....-
T Consensus 501 aad~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~sps 578 (625)
T KOG4422|consen 501 AADIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPS 578 (625)
T ss_pred HHHHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHH
Confidence 1112222233445544444 44566667778899999999999998864444445555555 4455556777788
Q ss_pred HHHHHHHhc
Q 042503 388 EAYDLIRSM 396 (477)
Q Consensus 388 ~A~~~~~~~ 396 (477)
.|...++-+
T Consensus 579 qA~~~lQ~a 587 (625)
T KOG4422|consen 579 QAIEVLQLA 587 (625)
T ss_pred HHHHHHHHH
Confidence 888877776
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-13 Score=118.00 Aligned_cols=356 Identities=11% Similarity=0.055 Sum_probs=195.2
Q ss_pred ccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHH--HHHH
Q 042503 31 HQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFA--PLLK 108 (477)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~ 108 (477)
..|+..+-.....+.+.|....|+..|......-+..|.+-+...--..+ .+....+.. |.+.+..-+. .+..
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~----~e~~~~l~~-~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD----IEILSILVV-GLPSDMHWMKKFFLKK 235 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch----HHHHHHHHh-cCcccchHHHHHHHHH
Confidence 44555555455556666777777777766554333333332222111111 122222221 1111111111 1223
Q ss_pred HhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC------CchHHhHHHHHHHHhcCCh
Q 042503 109 ACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH------RDVIVRNLMIHGFCKKGDV 182 (477)
Q Consensus 109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~ 182 (477)
++-.....+++.+-.+.....|++-+...-+....+.....|+++|+.+|+++.+ .|..+|+.++-.--...++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 3444456666666666667777766665556666666677778888888877765 3445555544322222222
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhC
Q 042503 183 DKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSG 262 (477)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (477)
.---+....+.+-.+.|...+.+-|.-.++.++|..+|+..++.+ +-....|+.+.+-|....+...|...++.+++-+
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 211111222223344566666666777777777777777776653 2234455666666666777777777777776666
Q ss_pred CccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHH
Q 042503 263 LYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVG 339 (477)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 339 (477)
|.+-..|-.|.++|.-.+.+.-|+-.|++..+ .|...|.+|.++|.+.++.++|++.|++....| ..+...+..
T Consensus 395 --p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~ 471 (559)
T KOG1155|consen 395 --PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVR 471 (559)
T ss_pred --chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHH
Confidence 66666777777777777777777766666543 356667777777777777777777777766655 345566666
Q ss_pred HHHHhhccccHHHHHHHHHHhhhc---cCC-CC-ChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 042503 340 VLTCCAHAGLVEKARELFASMTGL---HSI-VP-NLEHYGCMVDVLGRSGCVREAYDLIRS 395 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (477)
|...+.+.++.++|...|++-.+. .|. .| .......|..-+.+.+++++|......
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 667776777777766666655431 111 11 112222344455555666665554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-13 Score=116.26 Aligned_cols=327 Identities=11% Similarity=0.037 Sum_probs=237.3
Q ss_pred cchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCCh-hhHHHHHHHHHhcCC
Q 042503 134 FGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSV-VSWNLMISSLGKSGR 212 (477)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 212 (477)
|...+-...-.+.+.|..+.|+..|......-+..|.+-+....-..+.+.+..+.......+. ..---+..++....+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 4333333444555667777777777666553344444443333333333333333322222111 111223455666668
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCcc-chhHHHHHHHHHHHhcCChHH-HHHH
Q 042503 213 DSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYR-KVVSVGNALVDFYCKCGILDT-ARNV 290 (477)
Q Consensus 213 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~-a~~~ 290 (477)
.+++..-.+.....|++-+...-+....+.....++++|+.+|+.+.+...+. .+..+|..++-.--...++.- |..+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 88888888888888877777776777777788899999999999999987422 344455444433222222221 2222
Q ss_pred hccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCCh
Q 042503 291 FKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNL 370 (477)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 370 (477)
+ .+.+-.+.|...+.+-|.-.++.++|..+|++..+.+ +-....|+.+.+-|...++...|.+-++.+.+ -.|.|-
T Consensus 323 ~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~Dy 398 (559)
T KOG1155|consen 323 S-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDY 398 (559)
T ss_pred H-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhH
Confidence 2 2333345566777788888899999999999999886 55677899999999999999999999999984 236788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE 448 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (477)
..|-.|.++|.-.+.+.=|+-.|++. ..+| |+..|.+|+.+|.+.++.++|+..|++++..+..+..++..|++.|.+
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~ 478 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE 478 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 89999999999999999999999999 5555 568999999999999999999999999999998889999999999999
Q ss_pred cCCchHHHHHHHHHHh
Q 042503 449 GGRWDDAETLRMWMRE 464 (477)
Q Consensus 449 ~g~~~~A~~~~~~~~~ 464 (477)
.++.++|.+.+++.++
T Consensus 479 l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 479 LKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 9999999999998876
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=136.56 Aligned_cols=251 Identities=17% Similarity=0.119 Sum_probs=96.3
Q ss_pred HHHhhccCCchhHHHHHHHHHHhc-ccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCc---hHHhHHHHHHHHhcCCh
Q 042503 107 LKACLGVGDLRVGQCVHGEIIRSG-FERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRD---VIVRNLMIHGFCKKGDV 182 (477)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 182 (477)
...+.+.|++++|.++++...... .+.+...|..+.......++++.|.+.++++...+ ...+..++.. ...+++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 444555555555555554333332 22233444444445555555556655555555421 2233333333 455666
Q ss_pred HHHHHHHHhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhhccCcccchHHHHHHHH
Q 042503 183 DKGLYLFREMRE--RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQA-FELDEATVVAVLPICARLGAVDIGQWIHSYAE 259 (477)
Q Consensus 183 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (477)
++|.++++..-+ ++...+...+..+.+.++++++..+++.+.... .+++...|..+...+.+.|+.++|...++++.
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665554432 444556666777777788888888887766432 24456666777777777888888888888888
Q ss_pred HhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC---CCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHH
Q 042503 260 SSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP---RKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKAT 336 (477)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 336 (477)
+.. |.+..+...++..+...|+.+++..+++... ..|+..+..+..++...|++++|+.++++..... +.|...
T Consensus 174 ~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~ 250 (280)
T PF13429_consen 174 ELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW 250 (280)
T ss_dssp HH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred HcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence 777 7777777778888888888877666655443 3566677778888888888888888888887764 667777
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhh
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
...+..++...|+.++|.++..++.
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 7888888888888888888777664
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-13 Score=126.39 Aligned_cols=221 Identities=13% Similarity=0.010 Sum_probs=152.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchh------HHHHHHHHHH
Q 042503 205 SSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVV------SVGNALVDFY 278 (477)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~ 278 (477)
..+...|+++.|...++.+.+.. +-+......+...+.+.|+++.+..++..+.+....++.. .++..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554442 2233444444455555555555555555555544321111 1223334444
Q ss_pred HhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHH
Q 042503 279 CKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARE 355 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (477)
....+.+...++++.+.+ .++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+++.+
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 444556666777777654 46677888889999999999999999998874 5555322 3344456699999999
Q ss_pred HHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 356 LFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
..+...+.. +.|...+..+...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++.+.+.
T Consensus 316 ~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 316 VLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999988433 556677888999999999999999999999 778999999999999999999999999999997654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-13 Score=115.38 Aligned_cols=223 Identities=11% Similarity=0.007 Sum_probs=179.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChH
Q 042503 206 SLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILD 285 (477)
Q Consensus 206 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (477)
.+.-.|+.-.|..-|+..+.....++. .|.-+...|....+.++....|+.+.+.+ |.++.+|..-..++.-.++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHH
Confidence 345578889999999998887544333 27777788999999999999999999999 889999999999999999999
Q ss_pred HHHHHhccCCCC---CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh
Q 042503 286 TARNVFKEIPRK---NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG 362 (477)
Q Consensus 286 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (477)
+|..-|++...- ++..|-.+.-+..+.+++++++..|++.+.+ +|..+..|+.....+...++++.|.+.|+...+
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999998764 3455666666667889999999999999886 577788999999999999999999999999875
Q ss_pred ccCC------CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 363 LHSI------VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 363 ~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
.... .+.+.+.-.++..- -.+++..|.+++++. .+.|.. ..+..|...-.+.|+.++|+++|++...+..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2211 11122222233222 348999999999998 666755 5889999999999999999999999877653
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-14 Score=128.83 Aligned_cols=272 Identities=15% Similarity=0.135 Sum_probs=160.0
Q ss_pred ChhhHHHHhcccCC--Cc-hHHhHHHHHHHHhcCChHHHHHHHHhcCC------CChhhHHHHHHHHHhcCChhHHHHHH
Q 042503 150 QMDDGMKVFDEMSH--RD-VIVRNLMIHGFCKKGDVDKGLYLFREMRE------RSVVSWNLMISSLGKSGRDSEALRLF 220 (477)
Q Consensus 150 ~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~ 220 (477)
+..+|...|+.+.+ ++ ..+...+.++|...+++++|.++|+.+.+ .+...|.+.+..+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45678888887554 23 34556778889999999999999988875 4666777777655332 233333
Q ss_pred HH-HHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCC-
Q 042503 221 HE-MRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKN- 298 (477)
Q Consensus 221 ~~-m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 298 (477)
.+ +.+.. +..+.+|.++.++|.-+++.+.|++.|++..+-|
T Consensus 410 aq~Li~~~-------------------------------------~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp 452 (638)
T KOG1126|consen 410 AQDLIDTD-------------------------------------PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP 452 (638)
T ss_pred HHHHHhhC-------------------------------------CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC
Confidence 32 33222 4455555555555555555555555555555422
Q ss_pred --ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHH
Q 042503 299 --VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCM 376 (477)
Q Consensus 299 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (477)
..+|+.+..-+.....+|.|...|+..+... +-+-..|-.+.-.|.+.++++.|+-.|+++.+.. +.+......+
T Consensus 453 ~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~ 529 (638)
T KOG1126|consen 453 RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHI 529 (638)
T ss_pred ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhh
Confidence 2445555555555566666666666655432 2233344455556666666666666666665311 3344444455
Q ss_pred HHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 042503 377 VDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDD 454 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (477)
+..+.+.|+.++|+++++++ ...| |+..-...+..+...+++++|...++++.+.-|++...+..++..|.+.|+.+.
T Consensus 530 g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 530 GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH
Confidence 55666666666666666666 2222 333334444555666666777777777766667666666777777777777666
Q ss_pred HHHHHHHHHhC
Q 042503 455 AETLRMWMREN 465 (477)
Q Consensus 455 A~~~~~~~~~~ 465 (477)
|+.-|.-+.+.
T Consensus 610 Al~~f~~A~~l 620 (638)
T KOG1126|consen 610 ALLHFSWALDL 620 (638)
T ss_pred HHHhhHHHhcC
Confidence 66666555444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.3e-14 Score=127.98 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=146.1
Q ss_pred CCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChH---H
Q 042503 296 RKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLE---H 372 (477)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~ 372 (477)
+..+.+|-++..+|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+... ..++. .
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnA 491 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNA 491 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHH
Confidence 3567899999999999999999999999999864 4478899999999999999999999999888 34444 4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
|..|...|.++++++.|.-.|+++ .+.|.. .....++..+-+.|+.++|+++++++.-++|.++-.-...+..+...+
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~ 571 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLG 571 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhc
Confidence 556788999999999999999999 776654 677888888999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhC
Q 042503 451 RWDDAETLRMWMREN 465 (477)
Q Consensus 451 ~~~~A~~~~~~~~~~ 465 (477)
++++|+..++++.+.
T Consensus 572 ~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 572 RYVEALQELEELKEL 586 (638)
T ss_pred chHHHHHHHHHHHHh
Confidence 999999999999875
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-13 Score=123.45 Aligned_cols=278 Identities=12% Similarity=0.054 Sum_probs=166.1
Q ss_pred cCChHHHHHHHHhcCC--CCh-hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCcccchHH
Q 042503 179 KGDVDKGLYLFREMRE--RSV-VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDE--ATVVAVLPICARLGAVDIGQW 253 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~ 253 (477)
.|+++.|.+.+.+..+ |+. ..+-....+..+.|+++.|..++.+..+.. |+. ..-......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 5666666666655543 222 223333455556666777777666665442 332 222333555566666777777
Q ss_pred HHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCC---CceeHH----HHHHHHHhcCCchHHHHHHHHHH
Q 042503 254 IHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRK---NVVSWN----AMISGLAFNGRGELGVELYEQMI 326 (477)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~a~~~~~~m~ 326 (477)
.++.+.+.. |.++.+...+...+...|++++|.+.+..+.+. +...+. .........+..+++...+..+.
T Consensus 175 ~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 776666666 666666677777777777777777776666542 222221 11111122222333334444444
Q ss_pred HcCC---CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHH---HHHHHHHHHhcCCHHHHHHHHHhc-CCC
Q 042503 327 AKGV---SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEH---YGCMVDVLGRSGCVREAYDLIRSM-SIR 399 (477)
Q Consensus 327 ~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 399 (477)
+... +.+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.+++. ...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 4321 1366777777788888888888888888887422 33221 111112223456777777777776 334
Q ss_pred CCH---HHHHHHHHHHHHcCChHHHHHHHH--HHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 400 PNA---AIWGSLLSSCRTHGHVELAEHAVK--ELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 400 p~~---~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
|+. ....++++.+.+.|++++|.+.|+ .+.+..|+ +..+..++.++.+.|+.++|.+++++...
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443 456688888888888888888888 46666775 44566888888888888888888887644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-11 Score=107.68 Aligned_cols=437 Identities=13% Similarity=0.110 Sum_probs=272.4
Q ss_pred HHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcch-H-HHHHHHHHhcCCCch
Q 042503 6 LRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLL-F-NSMIKAYSLNGPSEE 83 (477)
Q Consensus 6 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~ 83 (477)
++.+...|++++|.+....++..+ +.|...+.+-+-++.+.+++++|+++.+.-....... + -.-..+..+.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 455667889999999999999987 5667788888889999999999998877654311111 1 122334567899999
Q ss_pred HHHHHHHHHhCCCCC-CcccHHHHHHHhhccCCchhHHHHHHHHHHhcccC-cchHHHHHHHHHHhcCChhhHHHHhccc
Q 042503 84 PVKLFALLKNLGIWP-DEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFER-FGSIRIGVVELYTSCGQMDDGMKVFDEM 161 (477)
Q Consensus 84 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (477)
|+..++ |..+ +..+...-.+.|.+.|++++|..+|+.+.+++.+. +......++..- -...+. +.+..
T Consensus 98 alk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~~q~v 167 (652)
T KOG2376|consen 98 ALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-LLQSV 167 (652)
T ss_pred HHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-HHHhc
Confidence 999988 2333 33366666788899999999999999998876542 222222222221 111121 33333
Q ss_pred CC---CchHHhHHHHHHHHhcCChHHHHHHHHhcC--------CCCh----------hhHHHHHHHHHhcCChhHHHHHH
Q 042503 162 SH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMR--------ERSV----------VSWNLMISSLGKSGRDSEALRLF 220 (477)
Q Consensus 162 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~----------~~~~~l~~~~~~~~~~~~a~~~~ 220 (477)
.. .+-..+......+...|++.+|+++++... +.|. ..--.|...+...|+.++|..+|
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 33 233333344556778999999999999882 1111 12334666778899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHH---HhhccCcccc--------------hHHHHHHHHHhCCccchhHHHHHHHHHHHhcCC
Q 042503 221 HEMRDQAFELDEATVVAVLP---ICARLGAVDI--------------GQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI 283 (477)
Q Consensus 221 ~~m~~~~~~~~~~~~~~l~~---~~~~~~~~~~--------------a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (477)
...++.. ++|........+ +.....++-. +......+.... ......-+.++.+| .+.
T Consensus 248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q--k~~i~~N~~lL~l~--tnk 322 (652)
T KOG2376|consen 248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ--KQAIYRNNALLALF--TNK 322 (652)
T ss_pred HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHH--hhh
Confidence 9998875 455533332222 2222211111 111111111111 11111112333333 355
Q ss_pred hHHHHHHhccCCCCC-ceeHHHHHHHHH--hcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHH--
Q 042503 284 LDTARNVFKEIPRKN-VVSWNAMISGLA--FNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFA-- 358 (477)
Q Consensus 284 ~~~a~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-- 358 (477)
.+.+.++...+.... ...+..++..+. +...+.++..++...-+....-.....-..+......|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 566766666665433 233444444333 223577788888777665322224555666777889999999999999
Q ss_pred ------HhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCCCH----HHHHHHHHHHHHcCChHHHHH
Q 042503 359 ------SMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-----SIRPNA----AIWGSLLSSCRTHGHVELAEH 423 (477)
Q Consensus 359 ------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~----~~~~~l~~~~~~~~~~~~a~~ 423 (477)
.+. ..+..| .+...+...+.+.++.+.|..++.+. ...+.. .++..+...-.++|+-++|..
T Consensus 403 ~~~~~ss~~-~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 403 LESWKSSIL-EAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred hhhhhhhhh-hhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 444 233334 45556777788888777777776665 112222 234444445567899999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 424 AVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
+++++++.+|++..+...++.+|++.. .+.|..+-+.+
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 999999999999999999999998874 66776665443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.3e-13 Score=122.24 Aligned_cols=287 Identities=14% Similarity=0.036 Sum_probs=166.8
Q ss_pred ccCCchhHHHHHHHHHHhcccCcc-hHHHHHHHHHHhcCChhhHHHHhcccCC--Cch--HHhHHHHHHHHhcCChHHHH
Q 042503 112 GVGDLRVGQCVHGEIIRSGFERFG-SIRIGVVELYTSCGQMDDGMKVFDEMSH--RDV--IVRNLMIHGFCKKGDVDKGL 186 (477)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~a~ 186 (477)
..|+++.|.+.+....+.. |+. ..+.....++...|+++.|.+.+++..+ |+. .........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3455555555554443322 222 1222333445555555555555555432 222 12222344455555566665
Q ss_pred HHHHhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH-HHHHhhccCcccchHHHHHHHHHhC
Q 042503 187 YLFREMRE--R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVA-VLPICARLGAVDIGQWIHSYAESSG 262 (477)
Q Consensus 187 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~ 262 (477)
+.++.+.+ | +......+...+...|++++|...+..+.+.++. +...+.. -..+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a--------------------- 231 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKA--------------------- 231 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH---------------------
Confidence 55555543 2 4456667777788888888888888888777533 2222211 1100
Q ss_pred CccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHH-H-H
Q 042503 263 LYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKA-T-F 337 (477)
Q Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~-~ 337 (477)
+..++..-......+.....++...+ .++..+..+...+...|+.++|..++++..+.. +.+.. . .
T Consensus 232 --------~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~ 302 (409)
T TIGR00540 232 --------EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLP 302 (409)
T ss_pred --------HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhH
Confidence 01111111111122333334443332 366677777778888888888888888888763 22221 1 1
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh--c-CCCCCHHHHHHHHHHHHH
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRS--M-SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~ 414 (477)
..........++.+.+.+.+++..+...-.|+......+...+.+.|++++|.+.|+. . ...|+...+..+...+.+
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1122223445777888888888875432222225666888889999999999999994 3 668999888899999999
Q ss_pred cCChHHHHHHHHHHHhc
Q 042503 415 HGHVELAEHAVKELINL 431 (477)
Q Consensus 415 ~~~~~~a~~~~~~~~~~ 431 (477)
.|+.++|.++|++.+..
T Consensus 383 ~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLGL 399 (409)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999987653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=112.15 Aligned_cols=200 Identities=13% Similarity=0.040 Sum_probs=166.6
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
......+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~ 106 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG 106 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 34456667788888899999999998887654 234567778888999999999999999998875 55667788888
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChH
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 419 (477)
..+...|++++|...+++.......+.....+..+...+...|++++|...+++. ...| +...+..+...+...|+++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence 8999999999999999999843223334567777889999999999999999998 4344 4578888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+|...++++++..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999998888888999999999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-11 Score=104.23 Aligned_cols=278 Identities=14% Similarity=0.112 Sum_probs=159.9
Q ss_pred cCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHH
Q 042503 179 KGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIH 255 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 255 (477)
.|++.+|++...+-.+ .....|..-+.+--+.|+.+.+-+++.+..+..-.++.....+........|+...|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3555555555544332 1122333333444455555555555555554422333344444445555555555555555
Q ss_pred HHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc-----------eeHHHHHHHHHhcCCchHHHHHHHH
Q 042503 256 SYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV-----------VSWNAMISGLAFNGRGELGVELYEQ 324 (477)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (477)
..+.+.+ |.++.+.....++|.+.|++.....++.++.+... .+|+.+++-....+..+.-...|+.
T Consensus 177 ~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 5555555 55555555566666666666666666655554211 2455555555555555555556665
Q ss_pred HHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCH
Q 042503 325 MIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNA 402 (477)
Q Consensus 325 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~ 402 (477)
.... .+.+...-..++.-+...|+.++|.++..+.. +.+..|+.. ..-...+-++...-++..++. ..+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 5443 24445555666667777777777777777776 354455411 112334555555555555554 222233
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
..+.+|+..|.+.+.+.+|...++.+++..| +...|..++.++.+.|+..+|.+..++....
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6677777778888888888888887777777 3777888888888888888888777776643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.5e-12 Score=102.85 Aligned_cols=257 Identities=11% Similarity=0.155 Sum_probs=146.0
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCC-Cch------HHhHHHHHHHHhcCChHHHHHHHHhcCCCCh---hhHHHHHHHHH
Q 042503 139 IGVVELYTSCGQMDDGMKVFDEMSH-RDV------IVRNLMIHGFCKKGDVDKGLYLFREMRERSV---VSWNLMISSLG 208 (477)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~ 208 (477)
.+|...|.+.|..|.|+++.+.+.+ ||. .....|..-|...|-+|.|+.+|..+.+.+. .+...|+..|-
T Consensus 73 ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ 152 (389)
T COG2956 73 LTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH
Confidence 3444444444555555544444433 221 1223444556666666666666666655222 24555667777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHH
Q 042503 209 KSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTAR 288 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 288 (477)
...+|++|++.-+++.+.+-.+... .-...|..+...+....+.+.|.
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~--------------------------------eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRV--------------------------------EIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchh--------------------------------HHHHHHHHHHHHHhhhhhHHHHH
Confidence 7777777777777666654333211 11222344444445555666666
Q ss_pred HHhccCCCCC---ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccC
Q 042503 289 NVFKEIPRKN---VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHS 365 (477)
Q Consensus 289 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 365 (477)
.++.+..+.| +..--.+.+.....|+++.|++.++...+.+..--..+...|..+|.+.|+.++....+.++.+ .
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-~- 278 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-T- 278 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-c-
Confidence 6666655432 2333445566777788888888888877775444456667777888888888888888777764 2
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHh
Q 042503 366 IVPNLEHYGCMVDVLGRSGCVREAYDLIRS-MSIRPNAAIWGSLLSSCRT---HGHVELAEHAVKELIN 430 (477)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 430 (477)
.+....-..+.+.-....-.+.|...+.+ ..-+|+...+..++..-.. .|...+....++.++.
T Consensus 279 -~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 279 -NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred -cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 34444444444444444445555544443 3667888877777776543 2344555556666653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-12 Score=104.53 Aligned_cols=265 Identities=12% Similarity=0.077 Sum_probs=175.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHH
Q 042503 203 MISSLGKSGRDSEALRLFHEMRDQAFELDEA---TVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC 279 (477)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (477)
|.+.|.+.|..+.|+++-..+.+..--+... ..-.+..-|...|-+|.|+.+|..+.+.+ .-...+...|+..|-
T Consensus 75 LGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~--efa~~AlqqLl~IYQ 152 (389)
T COG2956 75 LGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG--EFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch--hhhHHHHHHHHHHHH
Confidence 4444444555555555544444321111111 11123333455555555555555555544 334444466677777
Q ss_pred hcCChHHHHHHhccCCCCCcee--------HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH
Q 042503 280 KCGILDTARNVFKEIPRKNVVS--------WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE 351 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (477)
...+|++|+++-+++.+-+... |.-+...+....+.+.|..++++..+.+ +-....-..+.+.....|+++
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~ 231 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQ 231 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchH
Confidence 7777777777666555433332 3344555556789999999999998875 444555566778899999999
Q ss_pred HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 352 KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
.|.+.++.+.+ .+..--..+...|..+|...|+.++...++.++ ...+....-..+...-....-.+.|...+.+-+.
T Consensus 232 ~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 232 KAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 99999999984 433334567788999999999999999999988 5566666666666666667777888888888888
Q ss_pred cCCCCCchHHHHHHHHH---hcCCchHHHHHHHHHHhCCCccCCC
Q 042503 431 LEPWNSGNYVLLSNIYA---EGGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 431 ~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
..|. ...+..++..-. ..|.+.+-...++.|+..-++.+|.
T Consensus 311 r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 311 RKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred hCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 8885 667777777654 3356788888888888766666554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-11 Score=102.13 Aligned_cols=225 Identities=16% Similarity=0.065 Sum_probs=149.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccc------hhHHHHH
Q 042503 200 WNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRK------VVSVGNA 273 (477)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~ 273 (477)
+-+........|++..|..-+..+.+.+ +-+........++|.+.|++.....++..+.+.+...+ ...++..
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 3334444444555555554444444432 22333444444455555555555555555554444111 1223344
Q ss_pred HHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccH
Q 042503 274 LVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLV 350 (477)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (477)
+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ...-.+.+.++.
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~ 310 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDP 310 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCc
Confidence 44444444555555556666653 46777778888889999999999999999888777762 223346677787
Q ss_pred HHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 042503 351 EKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 429 (477)
..-++..+......+. ++..+..|...|.+.+.+.+|...|+.. ...|+..+|+-+..++.+.|+..+|.+..++.+
T Consensus 311 ~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 311 EPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 7777777777644443 4467888999999999999999999987 889999999999999999999999999999887
Q ss_pred hc
Q 042503 430 NL 431 (477)
Q Consensus 430 ~~ 431 (477)
..
T Consensus 389 ~~ 390 (400)
T COG3071 389 LL 390 (400)
T ss_pred HH
Confidence 44
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-10 Score=105.51 Aligned_cols=418 Identities=11% Similarity=0.048 Sum_probs=229.0
Q ss_pred hhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHH
Q 042503 9 LHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPV 85 (477)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 85 (477)
|-+.+.+...+...+.+++. .+.-+.+.....-.+...|+.++|........+ .+.++|..+.-.+-...++++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 34455566666666666663 233344444444444556777777776665554 34456666666666667777777
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--
Q 042503 86 KLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-- 163 (477)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 163 (477)
+.|......+ +-|...+.-+.-.-++.|+++.....-....+..+. ....|..++.++.-.|+...|..+++...+
T Consensus 96 Kcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777776643 334444554444445666666666555555553222 344555555556666666666666555432
Q ss_pred ---CchHHhHHH------HHHHHhcCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 042503 164 ---RDVIVRNLM------IHGFCKKGDVDKGLYLFREMRER---SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELD 231 (477)
Q Consensus 164 ---~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 231 (477)
++...+... .....+.|..++|.+.+...... ....-..-...+.+.+++++|..++..++.
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~------ 247 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE------ 247 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh------
Confidence 222222211 12223344445554444443321 111122233444445555555555555544
Q ss_pred HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHH-HHhccCCC--CCce-eHHHHHH
Q 042503 232 EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTAR-NVFKEIPR--KNVV-SWNAMIS 307 (477)
Q Consensus 232 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~--~~~~-~~~~l~~ 307 (477)
.+ |++...+..+..++.+-.+.-++. .+|....+ |... .-..=+.
T Consensus 248 -----------------------------rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls 296 (700)
T KOG1156|consen 248 -----------------------------RN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS 296 (700)
T ss_pred -----------------------------hC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH
Confidence 43 444444444444443222222222 33333322 0000 0000011
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHH-HHHHHHHhhhccC----------CCCChHHH--H
Q 042503 308 GLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEK-ARELFASMTGLHS----------IVPNLEHY--G 374 (477)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~----------~~~~~~~~--~ 374 (477)
......-.+..-.++..+.+.|+++-...+..+-.-=.+..-.++ +..+...+. ..| -+|....| -
T Consensus 297 vl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~-~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 297 VLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLS-GTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred HhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcc-cccCCCcccccccCCchHHHHHHH
Confidence 111122233455677778888877644444433321111111111 122222221 111 14554444 4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 042503 375 CMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (477)
.++..|-+.|+++.|..+++.. +..|+. ..|..-.+.+...|++++|..+++++.+++-.|..+-...+....++++.
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcccc
Confidence 5788899999999999999998 777776 56767778899999999999999999999977777777888999999999
Q ss_pred hHHHHHHHHHHhCCC
Q 042503 453 DDAETLRMWMRENNV 467 (477)
Q Consensus 453 ~~A~~~~~~~~~~~~ 467 (477)
++|.++....-..|.
T Consensus 456 ~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 456 EEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHhhhccc
Confidence 999999988877664
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-10 Score=103.17 Aligned_cols=251 Identities=15% Similarity=0.178 Sum_probs=120.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCC------HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccch---hHHHHHHHHHHHh
Q 042503 210 SGRDSEALRLFHEMRDQAFELD------EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKV---VSVGNALVDFYCK 280 (477)
Q Consensus 210 ~~~~~~a~~~~~~m~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 280 (477)
.|+..+....|.+..+. +.|- ...|..+...|-..|+++.|..+|+++.+... +.- ..+|..-..+-.+
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y-~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY-KTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-cchHHHHHHHHHHHHHHHh
Confidence 44455555555555443 2221 12355555666666666666666666665543 222 4455555566666
Q ss_pred cCChHHHHHHhccCCC-C--------------------CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC---------
Q 042503 281 CGILDTARNVFKEIPR-K--------------------NVVSWNAMISGLAFNGRGELGVELYEQMIAKGV--------- 330 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~-~--------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--------- 330 (477)
..+++.|+++.++... | +...|...++..-..|-++....+|+++++..+
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6666666666655431 0 112344444433334444444444444443321
Q ss_pred -------------------------CCCH-HHHHHHHHHhhc---cccHHHHHHHHHHhhhccCCCCChH--HHHHHHHH
Q 042503 331 -------------------------SPNK-ATFVGVLTCCAH---AGLVEKARELFASMTGLHSIVPNLE--HYGCMVDV 379 (477)
Q Consensus 331 -------------------------~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~ 379 (477)
.|+. ..|+..+..+.+ ...++.|..+|++..+ +.+|... .|-.....
T Consensus 518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHH
Confidence 2222 223333333222 2346666666666662 4444322 12112222
Q ss_pred HHhcCCHHHHHHHHHhc--CCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC--chHHHHHHHHHhcCCch
Q 042503 380 LGRSGCVREAYDLIRSM--SIRPNA--AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS--GNYVLLSNIYAEGGRWD 453 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~--~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~ 453 (477)
--+.|-...|+.++++. ++++.. ..|+..|.-....=-+..-..+|+++++.-|++. ......+..-.+.|..+
T Consensus 596 EEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEid 675 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEID 675 (835)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHH
Confidence 22345566666666666 333322 3445444433333334445566666666655432 23334455566677777
Q ss_pred HHHHHHHHHHh
Q 042503 454 DAETLRMWMRE 464 (477)
Q Consensus 454 ~A~~~~~~~~~ 464 (477)
.|..++.--.+
T Consensus 676 RARaIya~~sq 686 (835)
T KOG2047|consen 676 RARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHhhhh
Confidence 77776654433
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-10 Score=106.33 Aligned_cols=427 Identities=14% Similarity=0.091 Sum_probs=236.8
Q ss_pred hcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCC-CcccHH
Q 042503 29 KLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWP-DEYTFA 104 (477)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~ 104 (477)
.+.-|+.+|..+--++...|+++.+.+.|++... .....|+.+...+...|....|+.+++.-....-.| +...+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3445778888888888888999998888887765 455678888888888888888888888765532223 334444
Q ss_pred HHHHHhh-ccCCchhHHHHHHHHHHhc--cc--CcchHHHHHHHHHHhcC-----------ChhhHHHHhcccCC---Cc
Q 042503 105 PLLKACL-GVGDLRVGQCVHGEIIRSG--FE--RFGSIRIGVVELYTSCG-----------QMDDGMKVFDEMSH---RD 165 (477)
Q Consensus 105 ~l~~~~~-~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~---~~ 165 (477)
..-+.|. +.+..+++...-.+++... .. .....|..+.-+|...- ...++++.+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4445554 3466677776666665521 11 12233333333333211 12233444444432 12
Q ss_pred hHHhHHHHHHHHhcCChHHHHHHHHhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042503 166 VIVRNLMIHGFCKKGDVDKGLYLFREMRE----RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPI 241 (477)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 241 (477)
..+...+.--|+..++++.|.+...+..+ .+...|..++..+...+++.+|+.+.+.....- .-|......-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 22222222233444455555444444332 234445555555555555555555554433320 1111111111111
Q ss_pred hhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC---C---CCceeHHHHHHHHHhcC--
Q 042503 242 CARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP---R---KNVVSWNAMISGLAFNG-- 313 (477)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~---~~~~~~~~l~~~~~~~~-- 313 (477)
-...++.+.+......+...- .....+ ...++-....+....+. . ..+.++..+..-....+
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~w--e~~~~~--------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALW--EAEYGV--------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHH--HhhhhH--------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 112233333322222222111 000000 00011111111111111 0 01122222222111111
Q ss_pred -CchHHHHHHHHHHHcCCC--CC------HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC
Q 042503 314 -RGELGVELYEQMIAKGVS--PN------KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG 384 (477)
Q Consensus 314 -~~~~a~~~~~~m~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (477)
.++.. +...-+. |+ ...|......+.+.+..++|...+.+... ..+-....|......+...|
T Consensus 627 ~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 627 AGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred cccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHH
Confidence 11111 1111111 22 22344556677888899999988888873 33566778888888999999
Q ss_pred CHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHH--HHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 042503 385 CVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEH--AVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRM 460 (477)
Q Consensus 385 ~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (477)
.+++|.+.|... .+.|+. .+..++...+.+.|+..-|.. ++..+++.+|.++.+|..++.++.+.|+.++|.+.|.
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999999999888 667765 788999999999999888888 9999999999999999999999999999999999999
Q ss_pred HHHhCCCccCCCCcc
Q 042503 461 WMRENNVKKSPGQSL 475 (477)
Q Consensus 461 ~~~~~~~~~~~~~s~ 475 (477)
...+.. +.+|..+|
T Consensus 779 aa~qLe-~S~PV~pF 792 (799)
T KOG4162|consen 779 AALQLE-ESNPVLPF 792 (799)
T ss_pred HHHhhc-cCCCcccc
Confidence 887653 33444444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-10 Score=95.53 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG 381 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (477)
-.++..++.-..++++++.+++.....-...|.+.| .+..+.+..|.+.+|+++|-.+.. ..++.+..-...|.++|.
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~-~~ikn~~~Y~s~LArCyi 439 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISG-PEIKNKILYKSMLARCYI 439 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcC-hhhhhhHHHHHHHHHHHH
Confidence 334444444555666666666666654333333333 456677778888888888877762 333333333355677888
Q ss_pred hcCCHHHHHHHHHhcCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 382 RSGCVREAYDLIRSMSIRPNAAI-WGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
+.+.++-|+.++-++..+.+..+ +..+..-|.+.+.+--|.+.|+.+..++|.
T Consensus 440 ~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 440 RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 88888888888888753334433 344456788888888888888888877764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.9e-10 Score=95.76 Aligned_cols=275 Identities=10% Similarity=0.011 Sum_probs=210.3
Q ss_pred CchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhh---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042503 164 RDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVS---WNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLP 240 (477)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 240 (477)
.++.....+..++...|+.++|+..|++...-|+.+ .......+.+.|+++....+...+.... +-+...|-.-..
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 567778888899999999999999999877544433 2233445567888888888877776542 223333434444
Q ss_pred HhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchH
Q 042503 241 ICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGEL 317 (477)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 317 (477)
.....+++..|..+-++..+.+ +.+...+-.-...+...|++++|.-.|+.... -+..+|.-++.+|...|++.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 4556778888888888888887 77777777778888999999999999987653 367899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-HHhh-ccccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHH
Q 042503 318 GVELYEQMIAKGVSPNKATFVGVL-TCCA-HAGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRSGCVREAYDLIR 394 (477)
Q Consensus 318 a~~~~~~m~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 394 (477)
|...-+..... ++.+..++..+. .+|. ....-++|.+++++... ..|+ ....+.+...+...|..++++.+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 98887776654 356677776663 3333 33445788898888763 2344 4567778888999999999999999
Q ss_pred hc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 395 SM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 395 ~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
+. ...||....+.|...+...+.+++|.+.|..+++++|.+..+...|=..
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~l 514 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLL 514 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 98 7789999999999999999999999999999999999887766555433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.9e-12 Score=118.81 Aligned_cols=261 Identities=13% Similarity=0.002 Sum_probs=188.9
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhh---------ccCcccchHHHHHHHHH
Q 042503 196 SVVSWNLMISSLGK-----SGRDSEALRLFHEMRDQAFELD-EATVVAVLPICA---------RLGAVDIGQWIHSYAES 260 (477)
Q Consensus 196 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 260 (477)
+...|...+.+... .+.+++|...|++..+. .|+ ...+..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34455555554322 23467899999998875 454 334444444332 23457889999999999
Q ss_pred hCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHH
Q 042503 261 SGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATF 337 (477)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 337 (477)
.+ |.+..++..+...+...|++++|...|++..+ | +...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 333 ld--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~ 409 (553)
T PRK12370 333 LD--HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAG 409 (553)
T ss_pred cC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhH
Confidence 98 88888999999999999999999999998775 3 34578888889999999999999999999875 3333334
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHH-HHHHHHHHHHH
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAA-IWGSLLSSCRT 414 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~ 414 (477)
..++..+...|++++|...++++.+ .. +| +...+..+..++...|+.++|...++++ ...|+.. ..+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~-~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRS-QH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH-hc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 4445556678999999999999873 22 34 4555777888999999999999999988 4455544 44555556666
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 415 HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.| +.|...++++.+..-..+.....+...|.-.|+.+.+..+ +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 4788888887765433333334477778888888888777 8887765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-12 Score=104.00 Aligned_cols=228 Identities=13% Similarity=0.101 Sum_probs=150.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHh
Q 042503 201 NLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK 280 (477)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (477)
+.+.++|.+.|.+.+|...++..++. .|-+.||..+.+.|.+..++..|..++.+-.+.- |.++.......+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHH
Confidence 56777888888888888888777765 5666677777777777777777777777777665 6666666666777777
Q ss_pred cCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHH
Q 042503 281 CGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
.++.++|.++++...+ .++.....+...|.-.++++-|+++|+++.+.|+ -+...|+.+.-+|.-.++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7777777777776655 2444455555566667777777778877777773 36667777777777777777777777
Q ss_pred HHhhhccCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 358 ASMTGLHSIVPN--LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 358 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
++... .--.|+ ..+|-.+....+..|++.-|.+.|+-. ...| +...++.|.-.-.+.|+++.|..++..+.+..|
T Consensus 382 ~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 77663 222233 245555555556666666666666555 2222 335566665555566666666666666665555
Q ss_pred C
Q 042503 434 W 434 (477)
Q Consensus 434 ~ 434 (477)
+
T Consensus 461 ~ 461 (478)
T KOG1129|consen 461 D 461 (478)
T ss_pred c
Confidence 4
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-08 Score=92.64 Aligned_cols=434 Identities=12% Similarity=0.128 Sum_probs=268.2
Q ss_pred HHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC------------------------
Q 042503 7 RLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN------------------------ 62 (477)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------ 62 (477)
+-....+-++-+..+++..++.. |...+-.+..+++.+++++|.+.+.....
T Consensus 146 ~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis 221 (835)
T KOG2047|consen 146 KFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLIS 221 (835)
T ss_pred HHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHH
Confidence 33344555556666666665553 33355666777777888887777665542
Q ss_pred ----------------------CC--cchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhcc-----
Q 042503 63 ----------------------PS--VLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGV----- 113 (477)
Q Consensus 63 ----------------------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----- 113 (477)
+| -..|.+|.+-|.+.|.+++|.++|++.... ..+..-|..+..+|+.-
T Consensus 222 ~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~ 299 (835)
T KOG2047|consen 222 QNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCV 299 (835)
T ss_pred hCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHH
Confidence 11 124777888888888888888888877663 23444444444443321
Q ss_pred -----------CC------chhHHHHHHHHHHhcc-----------cCcchHHHHHHHHHHhcCChhhHHHHhcccCC--
Q 042503 114 -----------GD------LRVGQCVHGEIIRSGF-----------ERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-- 163 (477)
Q Consensus 114 -----------~~------~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 163 (477)
++ ++-....|+.+...++ +-++..|..-+.. ..|+..+-...|.+...
T Consensus 300 ~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~v 377 (835)
T KOG2047|consen 300 AAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTV 377 (835)
T ss_pred HHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHcc
Confidence 11 1222233333333221 1122233332222 23444444444444332
Q ss_pred -------CchHHhHHHHHHHHhcCChHHHHHHHHhcCCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 042503 164 -------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSV-------VSWNLMISSLGKSGRDSEALRLFHEMRDQAFE 229 (477)
Q Consensus 164 -------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 229 (477)
.-...|..+.+.|-..|+++.|..+|++..+-+- .+|......-.+..+++.|+.+++......-+
T Consensus 378 dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~ 457 (835)
T KOG2047|consen 378 DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTN 457 (835)
T ss_pred CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCc
Confidence 2234678888999999999999999999887322 25555666666788899999988876543211
Q ss_pred C-----------------CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhc
Q 042503 230 L-----------------DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFK 292 (477)
Q Consensus 230 ~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 292 (477)
| +...|...++.--..|-++....+++.+.+..+ .++.+.......+-.+.-++++.++++
T Consensus 458 ~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri--aTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 458 PELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI--ATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1 112344444555566888889999999999985 344444556666777888999999999
Q ss_pred cCCC----CCc-eeHHHHHHHHHh---cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHH--hhccccHHHHHHHHHHhhh
Q 042503 293 EIPR----KNV-VSWNAMISGLAF---NGRGELGVELYEQMIAKGVSPNKATFVGVLTC--CAHAGLVEKARELFASMTG 362 (477)
Q Consensus 293 ~~~~----~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~ 362 (477)
+-.. |++ ..|+..+.-+.+ ....+.|..+|++..+ |++|...-+..|+.+ -.+.|-...|+.+++++.
T Consensus 536 rgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat- 613 (835)
T KOG2047|consen 536 RGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT- 613 (835)
T ss_pred cCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-
Confidence 8765 444 467777766654 2468899999999998 777765433333322 234578889999999987
Q ss_pred ccCCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHH---HHHHHHHcCChHHHHHHHHHHHhcCCC--
Q 042503 363 LHSIVPN--LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGS---LLSSCRTHGHVELAEHAVKELINLEPW-- 434 (477)
Q Consensus 363 ~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~p~-- 434 (477)
.++++. ...||..|.--...=-+.....+|++. ..-|+...-.. ....-.+.|..++|..+|...-+.-++
T Consensus 614 -~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~ 692 (835)
T KOG2047|consen 614 -SAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRV 692 (835)
T ss_pred -hcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcC
Confidence 334443 356777776554444445555666666 44455543332 233446788999999999888776643
Q ss_pred CCchHHHHHHHHHhcCCch
Q 042503 435 NSGNYVLLSNIYAEGGRWD 453 (477)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~ 453 (477)
++..|...=..-.+.|+-+
T Consensus 693 ~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 693 TTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred ChHHHHHHHHHHHhcCCHH
Confidence 3556777777778888833
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-10 Score=103.30 Aligned_cols=280 Identities=13% Similarity=0.037 Sum_probs=210.1
Q ss_pred CchHHhHHHHHHHHhcCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042503 164 RDVIVRNLMIHGFCKKGDVDKGLYLFREMRER---SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLP 240 (477)
Q Consensus 164 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 240 (477)
.+.........-+...+++.+..++++...+. ....+..-|..+...|+..+-.-+=..+.+. .|-.+.+|-++.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 34444455556666777888888888777663 3344555566777778777777776777665 2445667777777
Q ss_pred HhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CceeHHHHHHHHHhcCCchH
Q 042503 241 ICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-NVVSWNAMISGLAFNGRGEL 317 (477)
Q Consensus 241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~ 317 (477)
-|...|...+|++.|.+....+ +.-...|-.+...|.-.|..++|+..+....+ + .-.-+--+..-|.+.++.+-
T Consensus 321 YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 7777788888888888888777 77778888999999999999999888776554 1 11223334455778899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhcc---C--CCCChHHHHHHHHHHHhcCCHHHHHHH
Q 042503 318 GVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLH---S--IVPNLEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 318 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
|.+.|.+..... |.|+..++-+.-.....+.+.+|..+|+...+.- + ...-..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999999988764 6677778888777788899999999998876211 0 011345688899999999999999999
Q ss_pred HHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 393 IRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 393 ~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
+++. -.+.+..++.+++-.|...|+++.|.+.|.+++-+.|++..+-..|..+..
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 9998 445677899999999999999999999999999999988766666665543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-11 Score=116.18 Aligned_cols=212 Identities=13% Similarity=-0.009 Sum_probs=170.7
Q ss_pred CcccchHHHHHHHHHhCCccchhHHHHHHHHHHHh---------cCChHHHHHHhccCCC---CCceeHHHHHHHHHhcC
Q 042503 246 GAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK---------CGILDTARNVFKEIPR---KNVVSWNAMISGLAFNG 313 (477)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 313 (477)
++.+.|...++++.+.. |.+...+..+..++.. .+++++|...+++..+ .+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 45678999999999888 7778787777766553 2447899999998876 35567888888889999
Q ss_pred CchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhcCCHHHHHHH
Q 042503 314 RGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
++++|...+++..+.+ +.+...+..+..++...|++++|...++++.+.. |+ ...+..++..+...|++++|...
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD---PTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999986 6677888889999999999999999999998533 33 23333445556778999999999
Q ss_pred HHhc--CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 393 IRSM--SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 393 ~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+++. ...|+ +..+..+..++...|+.++|...++++....|.+......++..|...| ++|...++++.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 9988 22454 4557778888899999999999999998888888888888888888888 4888888887653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.4e-12 Score=103.01 Aligned_cols=224 Identities=13% Similarity=0.015 Sum_probs=193.8
Q ss_pred HHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CceeHHHHHHHHHhc
Q 042503 236 VAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-NVVSWNAMISGLAFN 312 (477)
Q Consensus 236 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 312 (477)
..+.++|.+.|.+..|++.++...+. .+.+.+|..|...|.+..++..|+.+|.+..+ | |+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 46778999999999999999998887 45677788899999999999999999998876 4 333344566778888
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
++.++|.++|+...+.. +.+......+...|.-.++++.|+.+++++. ..|. .++..|+.+..+|.-.++++-++.-
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998875 6677777777888888999999999999999 4664 5788999999999999999999999
Q ss_pred HHhc---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 393 IRSM---SIRPN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 393 ~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
|++. --.|+ ..+|..+.......||+..|.+.|+-++..+|++..+++.|+-.-.+.|++++|..+++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9888 22343 4689999999999999999999999999999999999999999999999999999999887654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.6e-11 Score=109.89 Aligned_cols=272 Identities=13% Similarity=0.083 Sum_probs=159.4
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCc
Q 042503 86 KLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRD 165 (477)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (477)
.++-.+...|+.|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667777888888888988888888888888888 8888887777778888888888888888877665 577
Q ss_pred hHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHhhc
Q 042503 166 VIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMR-DQAFELDEATVVAVLPICAR 244 (477)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~l~~~~~~ 244 (477)
..+|+.|..+|...||+.. .+..++ ....+...+...|--.....++..+. ..+.-||..+. +.....
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---illlv~ 151 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILLLVL 151 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHHHHH
Confidence 7888888888888888765 222211 11122233333443333333333221 11223333221 111122
Q ss_pred cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc-CChHHHHHHhccCCC-CCceeHHHHHHHHHhcCCchHHHHHH
Q 042503 245 LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC-GILDTARNVFKEIPR-KNVVSWNAMISGLAFNGRGELGVELY 322 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (477)
.|.++.+.+++..+.......|... +++-.... ..+++-....+...+ +++.+|.+.+.+-...|+.+.|..++
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 2333333333322221111011000 11111111 112222222222222 67777777777777777777777778
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC
Q 042503 323 EQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG 384 (477)
Q Consensus 323 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (477)
.+|.+.|++.+.+.|..|+-+ .++...++.++..|. ..|+.|+..|+...+..+.+.|
T Consensus 228 ~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq-e~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 228 YEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ-EKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHH-HhcCCCCcchhHHHHHhhhcch
Confidence 888777777777776666644 666777777777777 4777777777766555555433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-09 Score=102.61 Aligned_cols=424 Identities=14% Similarity=0.074 Sum_probs=237.8
Q ss_pred HHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC----CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCC
Q 042503 20 QIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN----PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLG 95 (477)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 95 (477)
..+..+...|+.|+-.+|..+|..|+..|+.+.|- +|.-|.- .+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 56778889999999999999999999999999998 8887754 45567899999988888887775
Q ss_pred CCCCcccHHHHHHHhhccCCchh---HHHHHHHHHH----hcccC--------------cchHHHHHHHHHHhcCChhhH
Q 042503 96 IWPDEYTFAPLLKACLGVGDLRV---GQCVHGEIIR----SGFER--------------FGSIRIGVVELYTSCGQMDDG 154 (477)
Q Consensus 96 ~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~--------------~~~~~~~l~~~~~~~g~~~~A 154 (477)
.|...||..|..+|...||... +++.+..+.. .|... ....-...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6889999999999999998754 3332222222 22110 011112234444556667777
Q ss_pred HHHhcccCC--CchHHhHHHHHHHHh-cCChHHHHHHHHhcCC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 042503 155 MKVFDEMSH--RDVIVRNLMIHGFCK-KGDVDKGLYLFREMRE-RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFEL 230 (477)
Q Consensus 155 ~~~~~~~~~--~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 230 (477)
.+++..++. .+. ....+++-... ...+++-..+...... +++.+|..++..-...|+.+.|..++.+|.+.|++.
T Consensus 159 lkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 777766543 000 00001222211 2223333333333333 666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc-----------------------------
Q 042503 231 DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC----------------------------- 281 (477)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------------- 281 (477)
+...|-.++-+ .++...++.+++-|...|+ .|+..++...+..+.++
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv-~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGV-QPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcC-CCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 66555554433 5555555555555555555 44433333322222222
Q ss_pred -----------------------------------------CChHHHHHHhccCCCC-------CceeHHHHHHHHHhcC
Q 042503 282 -----------------------------------------GILDTARNVFKEIPRK-------NVVSWNAMISGLAFNG 313 (477)
Q Consensus 282 -----------------------------------------~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~ 313 (477)
|.-++.+.+-..+..| ++..|..++.-|.+.-
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 2222222222211111 1112222222211110
Q ss_pred ----------------------CchHHHHHHHHHHHcCCCCCHH----------------------------HHHHHHHH
Q 042503 314 ----------------------RGELGVELYEQMIAKGVSPNKA----------------------------TFVGVLTC 343 (477)
Q Consensus 314 ----------------------~~~~a~~~~~~m~~~~~~~~~~----------------------------~~~~l~~~ 343 (477)
...+..++... ..||.. .-+.++..
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 00000000000 011111 11222233
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHHcCCh
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-----SIRPNAAIWGSLLSSCRTHGHV 418 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~ 418 (477)
|++.-+..+++..-++.. ..-+ ...|..|++-+......+.|..+.++. ...-|...+..+.+...+.+..
T Consensus 469 l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 333333333333222222 1111 145777888888888888888888887 2334555677777888888888
Q ss_pred HHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 042503 419 ELAEHAVKELINLE---PWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKK 469 (477)
Q Consensus 419 ~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (477)
..+..+++++.+.- |....++..+.......|+.+.-.++.+-+...|+.-
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88888888887633 3334456667777778888888888888888777665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.8e-10 Score=103.05 Aligned_cols=230 Identities=18% Similarity=0.184 Sum_probs=163.7
Q ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHh-------CCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-------C-
Q 042503 233 ATVVAVLPICARLGAVDIGQWIHSYAESS-------GLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-------K- 297 (477)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~- 297 (477)
.++..+...|...|+++.|..+++.+.+. .. +.-....+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~h-l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKH-LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccC-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 34444555666666666666666655544 21 22333334577788888888888888877653 1
Q ss_pred C---ceeHHHHHHHHHhcCCchHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHhhccccHHHHHHHHHHhhhccC--
Q 042503 298 N---VVSWNAMISGLAFNGRGELGVELYEQMIAK-----GV-SPNK-ATFVGVLTCCAHAGLVEKARELFASMTGLHS-- 365 (477)
Q Consensus 298 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 365 (477)
+ ..+++.|..+|.+.|++++|..++++..+. |. .|.. ..++.+...|...+++++|..+++...+...
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2 246777777888899988888888776542 21 2222 2356677788899999999999987754222
Q ss_pred CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc---------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 366 IVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM---------SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 366 ~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
+.++ ..+++.|...|...|++++|.++++++ +..+. ...++.+...|.+.+++.+|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 1222 357899999999999999999999887 11232 357788999999999999999999988653
Q ss_pred ----CCCC---CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 432 ----EPWN---SGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 432 ----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
+|++ ..+|..|+..|.+.|++++|.++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4554 4468899999999999999999998886
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-11 Score=94.86 Aligned_cols=190 Identities=12% Similarity=0.048 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG 348 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 348 (477)
..|.-.|...|++..|..-+++..+.|+ .+|..+...|.+.|..+.|.+-|++..+.. +-+....|....-+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 3445555555555555555555554322 344445555555555555555555555543 334444555555555555
Q ss_pred cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHH
Q 042503 349 LVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVK 426 (477)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 426 (477)
.+++|...|++.........-..+|..+.-+..+.|+++.|...|++. ...|+ +.+...+.....+.|++..|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555555532222223345555555555555555555555554 22222 2344455555555555555555555
Q ss_pred HHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 427 ELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 427 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
+.....+...+.....++.-.+.|+.+.|-++=.++
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 555544444555555555555555555554443333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-10 Score=99.49 Aligned_cols=199 Identities=15% Similarity=0.072 Sum_probs=113.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHH
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDF 277 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (477)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|+++.|...++...+.. +.+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~-------- 100 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGD-------- 100 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHH--------
Confidence 455666666677777777777776665542 2223344444444455555555555555554443 33333
Q ss_pred HHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccccHHHHHHH
Q 042503 278 YCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV-SPNKATFVGVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (477)
.+..+...+...|++++|...+++...... +.....+..+..++...|++++|...
T Consensus 101 -----------------------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 101 -----------------------VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -----------------------HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 344445555555666666666666554321 12233455556666677777777777
Q ss_pred HHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 357 FASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
+++..+. .+.+...+..+...+...|++++|.+.+++. .. +.+...+..++..+...|+.+.|..+.+.+.+..
T Consensus 158 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 158 LTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 7776632 1334456666677777777777777777766 22 2344555566666667777777777766665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-09 Score=99.38 Aligned_cols=207 Identities=14% Similarity=0.142 Sum_probs=121.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC----------C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 171 LMIHGFCKKGDVDKGLYLFREMRE----------R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVL 239 (477)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 239 (477)
.+...|...+++.+|..+|+++.. | -..+++.|..+|.+.|++++|..+++...+-
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------- 312 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------- 312 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-------------
Confidence 345566666666666666666543 1 2246777888889999999888888776532
Q ss_pred HHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHH
Q 042503 240 PICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGV 319 (477)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 319 (477)
++....... +.-......+...+...+++++|..++.. +.
T Consensus 313 ---------------~~~~~~~~~-~~v~~~l~~~~~~~~~~~~~Eea~~l~q~------------------------al 352 (508)
T KOG1840|consen 313 ---------------YEKLLGASH-PEVAAQLSELAAILQSMNEYEEAKKLLQK------------------------AL 352 (508)
T ss_pred ---------------HHHhhccCh-HHHHHHHHHHHHHHHHhcchhHHHHHHHH------------------------HH
Confidence 111000000 22222233444444555555555444331 22
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhcc----C-CCC-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 042503 320 ELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLH----S-IVP-NLEHYGCMVDVLGRSGCVREAYDLI 393 (477)
Q Consensus 320 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 393 (477)
+++.......-+.-..+++.+...|.+.|++++|.++++++.... + ..+ ....++.|...|.+.++..+|.++|
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~ 432 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF 432 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence 222211111101123466777777777777777777777665311 1 111 1345667777777778877777777
Q ss_pred Hhc--------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 394 RSM--------SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 394 ~~~--------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
.+. ...|+. .+|..|...|...|+++.|.++.+.+.+
T Consensus 433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 766 234554 5788899999999999999998888864
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.1e-10 Score=91.11 Aligned_cols=414 Identities=11% Similarity=0.069 Sum_probs=254.8
Q ss_pred HHHhHHHHHhhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHH-HHHhh
Q 042503 36 ILAHFVSVCGTLNEIKYATKIFNQMRN--P-SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPL-LKACL 111 (477)
Q Consensus 36 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~ 111 (477)
-+.+.+..+.+..++++|++++..-.+ | +....+.|..+|....++..|.+.++++.. ..|...-|... .+.+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHH
Confidence 456667777888889999998876554 3 556778888888999999999999999877 35666655543 35556
Q ss_pred ccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC-CchHHhHHHHHHHHhcCChHHHHHHHH
Q 042503 112 GVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-RDVIVRNLMIHGFCKKGDVDKGLYLFR 190 (477)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 190 (477)
+.+.+..|..+...|.... ..-......-.......+++..+..++++... .+..+.+.......+.|+++.|.+-|+
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 7788888888887775420 00011111112234567889999999999884 666666666777778999999999998
Q ss_pred hcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccc
Q 042503 191 EMRE----RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRK 266 (477)
Q Consensus 191 ~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 266 (477)
...+ .....||.-+ +..+.|+++.|++...++.+.|++-.+..=.-+..--.....+.....+.. ..
T Consensus 169 aAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~--------Sa 239 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ--------SA 239 (459)
T ss_pred HHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH--------HH
Confidence 8876 3345666544 556778899999999999888865332210000000000000001111111 11
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHhccCCC-----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 267 VVSVGNALVDFYCKCGILDTARNVFKEIPR-----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
-...++.-...+.+.|+++.|.+.+-.|+. -|++|...+.-. -..+++.+..+-+.-+...+ |....||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHH
Confidence 223334455567788999999999999975 366665554321 23456777777777777765 45677899999
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHhcCCCCC--HHHHHHHHHHHHHcCC-
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG-RSGCVREAYDLIRSMSIRPN--AAIWGSLLSSCRTHGH- 417 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~~~- 417 (477)
-.||+..-++.|-+++.+-....-.-.+...|+ |++++. ..-..++|.+-++.+..... ......-+..-...++
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd 396 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDD 396 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 999999999999998865432111112333444 334443 34467777766665510000 0011111111111122
Q ss_pred --hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 042503 418 --VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 418 --~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (477)
...+++-|++.+++. .......++.|++..++..+.++|..-.+-..
T Consensus 397 ~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 397 EAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 122334444444443 12566778889999999999999988776543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-08 Score=87.38 Aligned_cols=284 Identities=10% Similarity=-0.036 Sum_probs=213.3
Q ss_pred HHHhcCChHHHHHHHHhcC-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhccCcc
Q 042503 175 GFCKKGDVDKGLYLFREMR-----ERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEAT-VVAVLPICARLGAV 248 (477)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~ 248 (477)
+.+-.++...|.+.+-.+. ..|+.....+...+...|+.++|+..|+..+.. .|+..+ .....-.+.+.|+.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~ 282 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGC 282 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCH
Confidence 3444555555555544333 257778899999999999999999999987654 343222 12222334677888
Q ss_pred cchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 249 DIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNGRGELGVELYEQM 325 (477)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m 325 (477)
+....+...+.... ..+...|..-+......++++.|+.+-++..+.++ ..|-.-...+...|++++|.-.|+..
T Consensus 283 e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 283 EQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 88888777776655 34444455556666778899999999998876544 34444456788899999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHH-HHHH-hcCCHHHHHHHHHhc-CCCCCH
Q 042503 326 IAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMV-DVLG-RSGCVREAYDLIRSM-SIRPNA 402 (477)
Q Consensus 326 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~~ 402 (477)
+... |-+...|..|+.+|...|.+.+|...-..... -++.+..+...+. ..+. ....-++|.+++++. .+.|+.
T Consensus 361 q~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 361 QMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred Hhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 8764 56789999999999999999999888777663 2355666665553 3332 333568899999988 778876
Q ss_pred -HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 403 -AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 403 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...+.+...|...|..+.++.++++.+...|+ ......|++.+...+.+++|...|...+..+
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 56778888899999999999999999999995 7789999999999999999999998887764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-08 Score=94.17 Aligned_cols=426 Identities=13% Similarity=0.118 Sum_probs=224.1
Q ss_pred HHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchHHH-HHHHHHhc-----
Q 042503 7 RLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNS-MIKAYSLN----- 78 (477)
Q Consensus 7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-l~~~~~~~----- 78 (477)
..+...|++++|+..++.-.+. +.............+.+.|+.++|..+|..+.+ |+-..|.. +..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 3455667777777666553333 233445566666777777777777777776665 43333333 33333111
Q ss_pred CCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCch-hHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHH
Q 042503 79 GPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLR-VGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKV 157 (477)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (477)
.+.+...++|+++... -|...+...+.-.+.....+. .+...+..+++.|++ .++..|-..|....+.+-..++
T Consensus 91 ~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 91 EDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 2344555666666553 244444444433333322232 334444555555543 2444444444433322222222
Q ss_pred hcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcC-CCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HH
Q 042503 158 FDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR-ERSVV--SWNLMISSLGKSGRDSEALRLFHEMRDQAFELD-EA 233 (477)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~ 233 (477)
+..... .....+.+.... ..-. .|... ++..+...|-..|++++|+.++++.+.. .|+ +.
T Consensus 166 ~~~~~~-----------~l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~e 229 (517)
T PF12569_consen 166 VEEYVN-----------SLESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVE 229 (517)
T ss_pred HHHHHH-----------hhcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHH
Confidence 222110 000000000000 0000 12332 3455667777888888888888887776 344 55
Q ss_pred HHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCce----------eH-
Q 042503 234 TVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVV----------SW- 302 (477)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~- 302 (477)
.|..-.+.+-..|++.+|....+.+...+ ..+..+-+..+..+.+.|+.++|..++....+++.. .|
T Consensus 230 ly~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf 307 (517)
T PF12569_consen 230 LYMTKARILKHAGDLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWF 307 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHH
Confidence 67777778888888888888888888877 666677677788888888888888888777665421 12
Q ss_pred -HHHHHHHHhcCCchHHHHHHHHHHHc--CC---CCCHH----------HHHHHHHHhhccc-------cHHHHHHHHHH
Q 042503 303 -NAMISGLAFNGRGELGVELYEQMIAK--GV---SPNKA----------TFVGVLTCCAHAG-------LVEKARELFAS 359 (477)
Q Consensus 303 -~~l~~~~~~~~~~~~a~~~~~~m~~~--~~---~~~~~----------~~~~l~~~~~~~~-------~~~~a~~~~~~ 359 (477)
.....+|.+.|++..|++-|....+. .+ +.|-+ +|..+++..-+.. -...|.+++-.
T Consensus 308 ~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~ 387 (517)
T PF12569_consen 308 ETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLE 387 (517)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 23456778888888887776665442 11 22222 2333332221111 12344555555
Q ss_pred hhhccCCCC-----------ChHHHHHHHHHH---HhcCCHHHHHHHHH-----------hc------CCCCCHHHHHHH
Q 042503 360 MTGLHSIVP-----------NLEHYGCMVDVL---GRSGCVREAYDLIR-----------SM------SIRPNAAIWGSL 408 (477)
Q Consensus 360 ~~~~~~~~~-----------~~~~~~~l~~~~---~~~g~~~~A~~~~~-----------~~------~~~p~~~~~~~l 408 (477)
+........ +..--..+..-. .+...-+++.+.-. +. ...||+ .
T Consensus 388 l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp-----~ 462 (517)
T PF12569_consen 388 LHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP-----L 462 (517)
T ss_pred HhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc-----c
Confidence 442110000 000000111000 11111112211110 00 112222 1
Q ss_pred HHHHHH-cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 409 LSSCRT-HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 409 ~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
+.-+.+ ..=.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 463 GekL~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 463 GEKLLKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 222223 33578899999999999999999999999999999999999887754
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-12 Score=78.74 Aligned_cols=50 Identities=38% Similarity=0.664 Sum_probs=44.8
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 042503 63 PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLG 112 (477)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 112 (477)
||+.+||.+|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78889999999999999999999999999999999999999999988764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.6e-12 Score=76.83 Aligned_cols=50 Identities=32% Similarity=0.471 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 042503 195 RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICAR 244 (477)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 244 (477)
||+.+||+++.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-10 Score=99.69 Aligned_cols=234 Identities=12% Similarity=0.010 Sum_probs=157.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcC
Q 042503 206 SLGKSGRDSEALRLFHEMRDQA-FELD--EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCG 282 (477)
Q Consensus 206 ~~~~~~~~~~a~~~~~~m~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (477)
.....+..+.++..+.+++... ..|+ ...|......+...|+.+.|...|+.+.+.. |.++.+|..+...+...|
T Consensus 35 ~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 35 PLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAG 112 (296)
T ss_pred ccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCC
Confidence 3444566778888888877542 2222 3456667777888899999999999998887 788889999999999999
Q ss_pred ChHHHHHHhccCCC--C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHH
Q 042503 283 ILDTARNVFKEIPR--K-NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFAS 359 (477)
Q Consensus 283 ~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 359 (477)
++++|...|++..+ | +..+|..+..++...|++++|...+++..+.. +.+. ........+...++.++|...|.+
T Consensus 113 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~-~~~~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 113 NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDP-YRALWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-HHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999988865 3 34677778888888999999999999988764 2232 122222234456788999999976
Q ss_pred hhhccCCCCChHHHHHHHHHHHhcCCHHH--HHHHHHhc-CC----CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 360 MTGLHSIVPNLEHYGCMVDVLGRSGCVRE--AYDLIRSM-SI----RP-NAAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
.... .+|+...+ .+. ....|+..+ +.+.+.+. .. .| ....|..++..+.+.|++++|+..|+++++.
T Consensus 191 ~~~~--~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 191 RYEK--LDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHhh--CCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5521 23332222 222 233444433 33333322 11 11 2357888889999999999999999999999
Q ss_pred CCC-CCchHHHHHHHHHh
Q 042503 432 EPW-NSGNYVLLSNIYAE 448 (477)
Q Consensus 432 ~p~-~~~~~~~l~~~~~~ 448 (477)
+|. .......++.....
T Consensus 266 ~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 266 NVYNFVEHRYALLELALL 283 (296)
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 864 34444444444433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-09 Score=95.39 Aligned_cols=92 Identities=14% Similarity=0.108 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 042503 269 SVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA 345 (477)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 345 (477)
..|..+...|...|+.++|...|++..+ .++..|+.+...+...|++++|...|++..+.. +.+..++..+..++.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3344455555555555555555554443 233445555555555555555555555555443 223444555555555
Q ss_pred ccccHHHHHHHHHHhh
Q 042503 346 HAGLVEKARELFASMT 361 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~ 361 (477)
..|++++|.+.|+...
T Consensus 144 ~~g~~~eA~~~~~~al 159 (296)
T PRK11189 144 YGGRYELAQDDLLAFY 159 (296)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-08 Score=91.94 Aligned_cols=381 Identities=13% Similarity=0.069 Sum_probs=220.8
Q ss_pred hcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHH
Q 042503 77 LNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMK 156 (477)
Q Consensus 77 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (477)
..+++...++..+.+.+ +.+-...|.....-.+...|+.++|....+..++..+. +...|+.+.-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence 34455555555555554 22333444444444444556666666665555554333 44555555555555566666666
Q ss_pred HhcccCC---CchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CC
Q 042503 157 VFDEMSH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQA-FE 229 (477)
Q Consensus 157 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~ 229 (477)
.|..... .|...|.-+.-.-.+.++++.....-....+ ..-..|..++.++.-.|++..|..++++..+.. -.
T Consensus 97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 6665443 3344444444344445555554444444333 233467777788888888888988888887664 24
Q ss_pred CCHHHHHHHH------HHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCcee
Q 042503 230 LDEATVVAVL------PICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVS 301 (477)
Q Consensus 230 ~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~ 301 (477)
|+...+.... ......|..+.|.+.+......- -+....-..-...+.+.+++++|..++..+.. ||...
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~ 254 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLD 254 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHH
Confidence 6655554322 23456677777777766555443 33444445667888899999999999999887 44444
Q ss_pred HHHHHH-HHHhcCCchHHH-HHHHHHHHcCCCCCHHHHHHHHHHhhcccc-HHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 302 WNAMIS-GLAFNGRGELGV-ELYEQMIAKGVSPNKATFVGVLTCCAHAGL-VEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 302 ~~~l~~-~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
|..... ++.+-.+.-++. .+|....+. .|....-..+-........ .+..-.++.... +.|+++-... +..
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l-~Kg~p~vf~d---l~S 328 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL-SKGVPSVFKD---LRS 328 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh-hcCCCchhhh---hHH
Confidence 544443 333333444444 666666543 2222111111111122222 233444555555 4666553332 333
Q ss_pred HHHhcCCHHHH----HHHHHhc-C------------CCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 042503 379 VLGRSGCVREA----YDLIRSM-S------------IRPNAAIW--GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 379 ~~~~~g~~~~A----~~~~~~~-~------------~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (477)
.|-.....+-- ..+...+ + -+|....| ..++..+-..|+++.|...++.+++..|.-++.|
T Consensus 329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 33222211111 1111111 1 14555444 4456678889999999999999999999988899
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 042503 440 VLLSNIYAEGGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (477)
..=++++...|++++|..++++..+.+.
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 9999999999999999999999987653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-09 Score=99.81 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhc---c----------CCCCCh--HHHHHHHHHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGL---H----------SIVPNL--EHYGCMVDVLG 381 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~----------~~~~~~--~~~~~l~~~~~ 381 (477)
.+..++..+..+|+|+ +|+.+-..|.......-...++...... . .-+|+. .++..+...|.
T Consensus 129 ~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 4556777788888665 4455555555555555555555554321 1 113444 34466788899
Q ss_pred hcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 042503 382 RSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
..|++++|++++++. ...|+ +..|..-++.+-+.|++++|.+.++.+.++++.|..+-+-.+..+.+.|+.++|.+++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999988 66777 5788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 042503 460 MWMRENNV 467 (477)
Q Consensus 460 ~~~~~~~~ 467 (477)
...-..+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 98877665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.6e-08 Score=84.94 Aligned_cols=413 Identities=10% Similarity=-0.001 Sum_probs=256.9
Q ss_pred HHHHhhcCChhHHHHHhccCCCCC----cchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCc
Q 042503 41 VSVCGTLNEIKYATKIFNQMRNPS----VLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDL 116 (477)
Q Consensus 41 ~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 116 (477)
+.-+....++..|+.+++--...+ ..+-..+...+.+.|++++|...+..+.... .|+...+..+.-+..-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 445566788999999987554311 1233345667788999999999999888765 56666666676666677888
Q ss_pred hhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCC--
Q 042503 117 RVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE-- 194 (477)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 194 (477)
.+|.++-... +.++-.-..+...-.+.|+-++-..+-+.+.+.. ..--++.......-.+++|++++.++..
T Consensus 108 ~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888776543 2133333445566667788777777666665422 2334555666667788999999999886
Q ss_pred CChhhHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhcc--Ccccch------------HHHHHHH
Q 042503 195 RSVVSWNL-MISSLGKSGRDSEALRLFHEMRDQAFELDE-ATVVAVLPICARL--GAVDIG------------QWIHSYA 258 (477)
Q Consensus 195 ~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~--~~~~~a------------~~~~~~~ 258 (477)
|+....|. +.-.|.+..-++-+..+++-..+. -||. ...+..+....+. |+.... ....+.+
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l 259 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL 259 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH
Confidence 44445554 345667777788888888877765 3443 3333332222222 221111 1122222
Q ss_pred HHhCCc----------------cchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCC-------c
Q 042503 259 ESSGLY----------------RKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGR-------G 315 (477)
Q Consensus 259 ~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~ 315 (477)
.+++.. ..-+.+...|+-.|.+.++..+|..+.+++....+.-|-.-.-.++..|+ .
T Consensus 260 ~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 260 CRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred HHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 222210 11123334566778889999999999988876555444433333444443 3
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 042503 316 ELGVELYEQMIAKGVSPN-KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIR 394 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 394 (477)
.-|...|+-.-+.+..-| ...-.++..++.-..++++.+..+..+. ..-...|...+ .+..+++..|++.+|.++|-
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~ 417 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELFI 417 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHHh
Confidence 334444444433333322 2234456667777788999999999988 35444454444 47889999999999999998
Q ss_pred hc-CCC-CCHHHHH-HHHHHHHHcCChHHHHHHHHHHHhcC-CCC-CchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 042503 395 SM-SIR-PNAAIWG-SLLSSCRTHGHVELAEHAVKELINLE-PWN-SGNYVLLSNIYAEGGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 395 ~~-~~~-p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (477)
.. +.+ .|..+|. .+.++|.+.|.++.|-+++ ++.+ |.+ ....-..+..+.+.+.+=-|.+.|+.+...+.
T Consensus 418 ~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 418 RISGPEIKNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 88 222 3445554 4567788899998886554 4444 332 23444566778899998888888888876543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-09 Score=85.69 Aligned_cols=162 Identities=14% Similarity=0.101 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG 381 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (477)
...+.-.|...|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++..... +.+..+.|...-.++
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHH
Confidence 3445556666666666666666666654 4455566666666666666666666666666321 444556666666666
Q ss_pred hcCCHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH
Q 042503 382 RSGCVREAYDLIRSMSIRP----NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAET 457 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (477)
..|++++|...|++.-..| -..+|..++.+..+.|+.+.|...|++.++.+|+.+.....++....+.|++..|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 6667777766666662122 134666666666666677777777777766666666666666666666677766666
Q ss_pred HHHHHHhCC
Q 042503 458 LRMWMRENN 466 (477)
Q Consensus 458 ~~~~~~~~~ 466 (477)
+++.....+
T Consensus 195 ~~~~~~~~~ 203 (250)
T COG3063 195 YLERYQQRG 203 (250)
T ss_pred HHHHHHhcc
Confidence 666665554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.7e-11 Score=101.48 Aligned_cols=144 Identities=13% Similarity=0.103 Sum_probs=67.4
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH----hcCCH
Q 042503 311 FNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG----RSGCV 386 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~ 386 (477)
..|++++|+++++.. .+.......+.++.+.++++.|.+.++.|.+ . ..|. +...+..++. ..+.+
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~--~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ-I--DEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-C--SCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCcH-HHHHHHHHHHHHHhCchhH
Confidence 344455554444321 2333444445555555555555555555552 1 1222 2222222221 22345
Q ss_pred HHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc-hHHHHHHHHHH
Q 042503 387 REAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW-DDAETLRMWMR 463 (477)
Q Consensus 387 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 463 (477)
.+|..+|+++ ...+++.+.+.++.++...|++++|.++++++++.+|.++.+...++-+....|+. +.+.+++.++.
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 5556566555 33345555555555555666666666666666555565555555555555555555 34444555544
Q ss_pred h
Q 042503 464 E 464 (477)
Q Consensus 464 ~ 464 (477)
.
T Consensus 264 ~ 264 (290)
T PF04733_consen 264 Q 264 (290)
T ss_dssp H
T ss_pred H
Confidence 3
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-08 Score=87.04 Aligned_cols=413 Identities=11% Similarity=0.017 Sum_probs=232.2
Q ss_pred HhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--CC-cchHHHHHHHHHhcCCCchH
Q 042503 8 LLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--PS-VLLFNSMIKAYSLNGPSEEP 84 (477)
Q Consensus 8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a 84 (477)
+.-..|+++.|...|...+..++ ++-..|..-..+|++.|++++|.+=-.+-++ |+ ...|+....++.-.|++++|
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 34466788888888887777763 3677777777788888888877765555444 33 34677777777778888888
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHH-----HHHHhcCChhhHHHHhc
Q 042503 85 VKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVV-----ELYTSCGQMDDGMKVFD 159 (477)
Q Consensus 85 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~ 159 (477)
+.-|.+-++.. +-+...+.-+..+.... . .+.+.|. ++..+..+. +.+...-.+..-++.+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~ 156 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILEIIQ 156 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-Hhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHHHhh
Confidence 88887777643 22344444455544100 0 0000000 111111111 11111111111111111
Q ss_pred ccCCCchHH---hHHHHHHHHhcCChH-HHHHHH------------HhcCC--C-------------ChhhHHHHHHHHH
Q 042503 160 EMSHRDVIV---RNLMIHGFCKKGDVD-KGLYLF------------REMRE--R-------------SVVSWNLMISSLG 208 (477)
Q Consensus 160 ~~~~~~~~~---~~~l~~~~~~~~~~~-~a~~~~------------~~~~~--~-------------~~~~~~~l~~~~~ 208 (477)
.... ++.. ...+..+.......+ .....- ..... | -....-.+.++..
T Consensus 157 ~~p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 157 KNPT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred cCcH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 1110 0000 000111110000000 000000 00000 0 0112455677777
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH-------HHHHHHhc
Q 042503 209 KSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA-------LVDFYCKC 281 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~ 281 (477)
+..+++.|++-+....... -+...++....++...|.............+.| .....-++. +..+|.+.
T Consensus 236 kkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g--re~rad~klIak~~~r~g~a~~k~ 311 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG--RELRADYKLIAKALARLGNAYTKR 311 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh--HHHHHHHHHHHHHHHHhhhhhhhH
Confidence 7888888888888877664 344445566667788888877777777666666 333322222 33466667
Q ss_pred CChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccccHHHHHHHHHHh
Q 042503 282 GILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN-KATFVGVLTCCAHAGLVEKARELFASM 360 (477)
Q Consensus 282 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (477)
++++.++..|.+...+... -....+....+++........-.+ |. ..-...-...+.+.|++..|+..|.++
T Consensus 312 ~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 312 EDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred HhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 7888888888775432111 111222333444444444433332 22 112222356677889999999999998
Q ss_pred hhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 361 TGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
.+.. |.|...|..-..+|.+.|.+..|++-.+.. ...|+. ..|..-+.++....+++.|.+.|++.++.+|.+...
T Consensus 385 Ikr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 385 IKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 8432 677888888889999999999988887777 445544 456555666677778999999999999999988777
Q ss_pred HHHHHHHHHh
Q 042503 439 YVLLSNIYAE 448 (477)
Q Consensus 439 ~~~l~~~~~~ 448 (477)
...+.+++..
T Consensus 463 ~~~~~rc~~a 472 (539)
T KOG0548|consen 463 IDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHH
Confidence 7777776664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.8e-09 Score=98.06 Aligned_cols=219 Identities=12% Similarity=-0.014 Sum_probs=113.0
Q ss_pred ccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC-----C---CCceeHHHHHHHHHhcCCc
Q 042503 244 RLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP-----R---KNVVSWNAMISGLAFNGRG 315 (477)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~ 315 (477)
...+++.|...|....... |.+...|-.........|+.-++..+|..-. + ++..-|-........+|+.
T Consensus 862 ~n~d~E~A~~af~~~qSLd--P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLD--PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred ecccHHHhhHHHHhhhhcC--chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 3344445555555554444 4444444333333344444444444444311 0 2222233333334445554
Q ss_pred hHHHHHHHHHHH---------cCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHH----HHHHHHHh
Q 042503 316 ELGVELYEQMIA---------KGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYG----CMVDVLGR 382 (477)
Q Consensus 316 ~~a~~~~~~m~~---------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~ 382 (477)
++-+...+++.. .+.+.+.+.|........+.+.+..|.....+...--...-+...|+ .+.+.+..
T Consensus 940 e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ls 1019 (1238)
T KOG1127|consen 940 EESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELS 1019 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Confidence 443333333221 13344566666666666666666666665555432111123333444 34455666
Q ss_pred cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHHHH
Q 042503 383 SGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS---GNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 383 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
.|.++.|...+.......+...-..-+.. .-.++++++.+.|+++..+...+. .....++......|..+.|...+
T Consensus 1020 lgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1020 LGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLL 1098 (1238)
T ss_pred hcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHH
Confidence 77777776665544222222222211111 346789999999999987664333 35566666677888888888887
Q ss_pred HHHHhC
Q 042503 460 MWMREN 465 (477)
Q Consensus 460 ~~~~~~ 465 (477)
-+....
T Consensus 1099 fe~~~l 1104 (1238)
T KOG1127|consen 1099 FEVKSL 1104 (1238)
T ss_pred HHHHHh
Confidence 777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.9e-08 Score=89.94 Aligned_cols=422 Identities=13% Similarity=0.017 Sum_probs=268.9
Q ss_pred CHHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC----C-CcchHHHHHHHH
Q 042503 1 IERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN----P-SVLLFNSMIKAY 75 (477)
Q Consensus 1 i~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~l~~~~ 75 (477)
||..|.=++...|+++.+-+.|+......+ .....|+.+...+...|.-..|..++++-.. | ++..+-..-..|
T Consensus 325 i~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc 403 (799)
T KOG4162|consen 325 IFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLC 403 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHH
Confidence 455666677888999999999998887764 3567888898999999999999999987654 2 233344444445
Q ss_pred Hh-cCCCchHHHHHHHHHhC--CC--CCCcccHHHHHHHhhcc-----------CCchhHHHHHHHHHHhcccCcchHHH
Q 042503 76 SL-NGPSEEPVKLFALLKNL--GI--WPDEYTFAPLLKACLGV-----------GDLRVGQCVHGEIIRSGFERFGSIRI 139 (477)
Q Consensus 76 ~~-~~~~~~a~~~~~~~~~~--~~--~p~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~ 139 (477)
.+ -+..+++++.-.+..+. +. ...+..|..+.-+|... ....++.+.+++.++.+.. |+.+..
T Consensus 404 ~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if 482 (799)
T KOG4162|consen 404 IERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIF 482 (799)
T ss_pred HhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHH
Confidence 44 47778888777777662 11 11233344443333211 1234567778888776554 334444
Q ss_pred HHHHHHHhcCChhhHHHHhcccCC----CchHHhHHHHHHHHhcCChHHHHHHHHhcCCC---ChhhHHHHHHHHHhcCC
Q 042503 140 GVVELYTSCGQMDDGMKVFDEMSH----RDVIVRNLMIHGFCKKGDVDKGLYLFREMRER---SVVSWNLMISSLGKSGR 212 (477)
Q Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 212 (477)
.+.--|+..++.+.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+..... |-.....-+..-..-++
T Consensus 483 ~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~ 562 (799)
T KOG4162|consen 483 YLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFND 562 (799)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhccc
Confidence 455567888999999998887655 67889999999999999999999998877642 22222222333344677
Q ss_pred hhHHHHHHHHHHHc--CCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHH---hcCChHHH
Q 042503 213 DSEALRLFHEMRDQ--AFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC---KCGILDTA 287 (477)
Q Consensus 213 ~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a 287 (477)
.++++.....+... ...+-..+.. .|....-..-+..... .. ...+.++..+..... +.-..+..
T Consensus 563 ~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~~~lk~~l~la~~-q~-~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 563 REEALDTCIHKLALWEAEYGVQQTLD--------EGKLLRLKAGLHLALS-QP-TDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhhhhhhcccccCcc-cc-cccchhhHHHHHHHHhhhhhcccccc
Confidence 77777777666532 0011000000 0000000000000001 00 112222222221111 11112222
Q ss_pred HHHhccCCCCCc------eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 288 RNVFKEIPRKNV------VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 288 ~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
+..+.....|+. ..|......+.+.++.++|...+.+..... +-....|......+...|..++|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 222222222332 245566677888999999998888877653 5567777777788889999999999998887
Q ss_pred hccCCCCChHHHHHHHHHHHhcCCHHHHHH--HHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 042503 362 GLHSIVPNLEHYGCMVDVLGRSGCVREAYD--LIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG 437 (477)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (477)
.. -|.++.+..++..++.+.|+..-|.. ++.++ .+.| ++..|..++..+.+.|+.++|.+.|..+.++++.+|.
T Consensus 712 ~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 712 AL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred hc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 32 24556788999999999998877777 88888 5555 5689999999999999999999999999998866554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-07 Score=84.31 Aligned_cols=411 Identities=14% Similarity=0.046 Sum_probs=233.7
Q ss_pred HHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCc
Q 042503 40 FVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDL 116 (477)
Q Consensus 40 l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 116 (477)
=++.+.+.|++++|.+...++.. .+...+..=+-++.+.+.+++|+.+.+.-... ..+...+---.-+..+.+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence 35667788899999988887765 34456667777888889999998665543321 11111111112333577888
Q ss_pred hhHHHHHHHHHHhcccCcc-hHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHH-HhcCChHHHHHHHHhcCC
Q 042503 117 RVGQCVHGEIIRSGFERFG-SIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGF-CKKGDVDKGLYLFREMRE 194 (477)
Q Consensus 117 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~ 194 (477)
++|...++ |..++. .+...-...+.+.|++++|..+|+.+.+.+...+..-+++- ...+....+. +.+..+.
T Consensus 96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~ 169 (652)
T KOG2376|consen 96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPE 169 (652)
T ss_pred HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccC
Confidence 88888877 344433 36666778888999999999999998764444443332221 1111111221 3444444
Q ss_pred CChhhHHH---HHHHHHhcCChhHHHHHHHHHHHcC--------CC-CCH----HH-HHHHHHHhhccCcccchHHHHHH
Q 042503 195 RSVVSWNL---MISSLGKSGRDSEALRLFHEMRDQA--------FE-LDE----AT-VVAVLPICARLGAVDIGQWIHSY 257 (477)
Q Consensus 195 ~~~~~~~~---l~~~~~~~~~~~~a~~~~~~m~~~~--------~~-~~~----~~-~~~l~~~~~~~~~~~~a~~~~~~ 257 (477)
....+|.. ....+...|++.+|+++++...+.+ .. -+. .+ -..+.-.+...|+.++|..++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 22334433 3456677899999999999873221 11 011 11 12334456778999999999988
Q ss_pred HHHhCCccchhHH---HHHHHHHHHhcCChH-HHHHHhccCCCCCcee--------------H-HHHHHHHHhcCCchHH
Q 042503 258 AESSGLYRKVVSV---GNALVDFYCKCGILD-TARNVFKEIPRKNVVS--------------W-NAMISGLAFNGRGELG 318 (477)
Q Consensus 258 ~~~~~~~~~~~~~---~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~--------------~-~~l~~~~~~~~~~~~a 318 (477)
..+... ++.+.. -|.|+.+-....-++ .++..++......... . +.++..|. +..+.+
T Consensus 250 ~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~ 326 (652)
T KOG2376|consen 250 IIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQV 326 (652)
T ss_pred HHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence 888874 332221 122222211111122 1222232222111111 1 11122221 122222
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhc--cccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHH-
Q 042503 319 VELYEQMIAKGVSPNKATFVGVLTCCAH--AGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRSGCVREAYDLIR- 394 (477)
Q Consensus 319 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~- 394 (477)
.++..... +..|. ..+..++..+.+ .....++..++....+ +.+.+ ..+.-.++......|+++.|.+++.
T Consensus 327 r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 327 RELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 22222211 22233 334444444332 2246777777777763 22333 4455667778889999999999998
Q ss_pred -------hc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCCchHHHHHH
Q 042503 395 -------SM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE-------PWNSGNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 395 -------~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
.. .+.-.+.+...+...+.+.++.+.|..++.++++.- +.-..++..++..-.+.|+-++|...+
T Consensus 402 ~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 402 FLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred HhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 33 334445566667777888888888888888876422 222334556666667889999999999
Q ss_pred HHHHhCC
Q 042503 460 MWMRENN 466 (477)
Q Consensus 460 ~~~~~~~ 466 (477)
+++.+.+
T Consensus 482 eel~k~n 488 (652)
T KOG2376|consen 482 EELVKFN 488 (652)
T ss_pred HHHHHhC
Confidence 9998854
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.3e-08 Score=90.34 Aligned_cols=169 Identities=14% Similarity=0.163 Sum_probs=90.7
Q ss_pred HHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHH
Q 042503 239 LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELG 318 (477)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 318 (477)
+.+......|.+|..+++.+.+... ....|..+...|...|+++.|.++|-+.. .++-.|..|.+.|+|+.|
T Consensus 739 ieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHH
Confidence 3444555666666666666655532 23344566666777777777777665432 344456666677777776
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 042503 319 VELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSI 398 (477)
Q Consensus 319 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (477)
.++-.+.. |.......|..-..-....|++.+|++++-.+. .|+. -|.+|-+.|..++.+++.++..-
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 66654432 323334444444445556666666666554333 2432 34556666666666666655511
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 042503 399 RPNAAIWGSLLSSCRTHGHVELAEHAVKE 427 (477)
Q Consensus 399 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 427 (477)
..-..|-..+..-+-..|+.+.|++.|-+
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 11223444444445555555555544433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-09 Score=96.55 Aligned_cols=220 Identities=12% Similarity=0.060 Sum_probs=174.2
Q ss_pred hhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcCCchHH
Q 042503 242 CARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNGRGELG 318 (477)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a 318 (477)
+.+.|++..|.-.|+.+++.+ |.+..+|..|.......++-..|+..+++..+-|+ ...-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 356788888888888888888 89999999999999999998889988888876444 4555566678888888899
Q ss_pred HHHHHHHHHcCCCCCHHHHHH-------HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 042503 319 VELYEQMIAKGVSPNKATFVG-------VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 319 ~~~~~~m~~~~~~~~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 391 (477)
+..++.-+... +|-...-.. .-..+.....+....++|-.+....+..+|+.++..|.-.|--.|.+++|+.
T Consensus 373 l~~L~~Wi~~~-p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 373 LKMLDKWIRNK-PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHhC-ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 99988876643 111000000 0012233344556666666665456656888899999999999999999999
Q ss_pred HHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 392 LIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 392 ~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.|+.+ .++|+. .+||.|+..+....+.++|+..|.+++++.|.-.++.+.|+-.|...|.+++|.+.|=..+.
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99998 777765 78999999999999999999999999999999999999999999999999999998877654
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-08 Score=83.00 Aligned_cols=297 Identities=13% Similarity=0.075 Sum_probs=185.7
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHH---HHHHhcCChHHHHHHHHhcCC--CChh-hHHHHHHHHHhcCC
Q 042503 139 IGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMI---HGFCKKGDVDKGLYLFREMRE--RSVV-SWNLMISSLGKSGR 212 (477)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~ 212 (477)
.-+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-|+++.+ ||-. +--.-...+.++|.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 34455566667777777777777665555555443 356667777777776666654 3322 11223345667777
Q ss_pred hhHHHHHHHHHHHcCCC------------CCHHH--HHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHH
Q 042503 213 DSEALRLFHEMRDQAFE------------LDEAT--VVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFY 278 (477)
Q Consensus 213 ~~~a~~~~~~m~~~~~~------------~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (477)
++.|..-|+..++.... +.... ....+..+...|+...++.....+.+.. +-+...+..-..+|
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHH
Confidence 77777777777665311 11111 2223444566677777777777777776 67777777777788
Q ss_pred HhcCChHHHHHHhccCC---CCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHH----HHHH---------HH
Q 042503 279 CKCGILDTARNVFKEIP---RKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKAT----FVGV---------LT 342 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l---------~~ 342 (477)
...|++..|+.=++... ..+...+..+-..+...|+.+.++...++-.+. .||... |..+ +.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHH
Confidence 88888887776555443 345555666666667777777777777766654 344322 1111 11
Q ss_pred HhhccccHHHHHHHHHHhhhccCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHc
Q 042503 343 CCAHAGLVEKARELFASMTGLHSIVPN-----LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTH 415 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 415 (477)
.....+++.+++...+...+ . .|. ...+..+-.++...|++.+|++...+. .+.|+ ..++..-..+|.-.
T Consensus 278 ~~ie~~~~t~cle~ge~vlk-~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d 354 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLK-N--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD 354 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHh-c--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh
Confidence 22345666677776666663 2 233 123444556677778888888888877 66665 67777778888888
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHH
Q 042503 416 GHVELAEHAVKELINLEPWNSGNYVLL 442 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l 442 (477)
..++.|+.-|+++.+.++.+..+-..+
T Consensus 355 E~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 355 EMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 888888888888888888766554443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-07 Score=85.06 Aligned_cols=196 Identities=12% Similarity=0.104 Sum_probs=100.2
Q ss_pred cCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC-----------CCc-chHHHHHHHHHhc
Q 042503 11 GRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN-----------PSV-LLFNSMIKAYSLN 78 (477)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~-~~~~~l~~~~~~~ 78 (477)
..|+.+.|.+-.+.+. +..+|..+..+|.+.+++|-|.-.+-.|.. .+. ..-....-.-...
T Consensus 740 tiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieL 813 (1416)
T KOG3617|consen 740 TIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIEL 813 (1416)
T ss_pred EeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHH
Confidence 4456665555444432 334667777777777777766666555543 111 1111222223455
Q ss_pred CCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHh
Q 042503 79 GPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVF 158 (477)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (477)
|..++|..+|.+.++. ..|-..|-..|.+++|.++-+.--+..+ ..||.....-+-..++.+.|++.|
T Consensus 814 gMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aleyy 881 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYY 881 (1416)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHH
Confidence 6667777777666653 2233444456666666666543222111 234444445555566666666666
Q ss_pred cccCC-----------------------CchHHhHHHHHHHHhcCChHHHHHHHHhcCC---------------------
Q 042503 159 DEMSH-----------------------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE--------------------- 194 (477)
Q Consensus 159 ~~~~~-----------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------------------- 194 (477)
++... .|...|.-....+-..|+.+.|+.+|+...+
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHH
Confidence 65432 1222222222223335666666666655432
Q ss_pred ---CChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042503 195 ---RSVVSWNLMISSLGKSGRDSEALRLFHEMR 224 (477)
Q Consensus 195 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 224 (477)
.|..+...+.+.|-..|++.+|...|-+.+
T Consensus 962 ~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 962 EESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 233445556666666666666666665543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.6e-09 Score=89.63 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh----
Q 042503 270 VGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA---- 345 (477)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~---- 345 (477)
+.......+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.+.+ .| .+...+..++.
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~ 178 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLAT 178 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHh
Confidence 3334445566678888888877765 455556667788888888888888888887643 33 33333444332
Q ss_pred ccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCCh-HHHH
Q 042503 346 HAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHV-ELAE 422 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~ 422 (477)
-.+.+..|..+|+++.+ ...+++.+.+.+..++...|++++|.+++++. ...| ++.++..++.+....|+. +.+.
T Consensus 179 g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 179 GGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp TTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred CchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 22358888899998874 34677888888888888999999999888887 3334 456777777777777777 6677
Q ss_pred HHHHHHHhcCCCCC
Q 042503 423 HAVKELINLEPWNS 436 (477)
Q Consensus 423 ~~~~~~~~~~p~~~ 436 (477)
+.+.++....|.++
T Consensus 257 ~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 257 RYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHCHHHTTTSH
T ss_pred HHHHHHHHhCCCCh
Confidence 88888888888644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-07 Score=84.58 Aligned_cols=259 Identities=14% Similarity=-0.003 Sum_probs=152.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHH
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICAR----LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC 279 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (477)
...+...|++++|...+++..+.. +.|...+.. ...+.. .+..+.+.+.+... ....+........+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHH
Confidence 344566778888888877776652 223323331 112222 33334444444331 1111444445556667788
Q ss_pred hcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhhccccHHHH
Q 042503 280 KCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV-SPNK--ATFVGVLTCCAHAGLVEKA 353 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a 353 (477)
..|++++|...+++..+ .+...+..+..++...|++++|..++++...... .|+. ..|..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 88888888888887765 3445667777888888899999888888776532 1222 2345677788888999999
Q ss_pred HHHHHHhhhccCCCCChHHH-H--HHHHHHHhcCCHHHHHHH--H-Hhc-CCCCC---HHHHHHHHHHHHHcCChHHHHH
Q 042503 354 RELFASMTGLHSIVPNLEHY-G--CMVDVLGRSGCVREAYDL--I-RSM-SIRPN---AAIWGSLLSSCRTHGHVELAEH 423 (477)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~ 423 (477)
..++++........+..... + .++..+...|....+.++ + ... ...|. .........++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 99998876322111222111 1 223333344433333332 1 111 11011 1222345667778899999999
Q ss_pred HHHHHHhcCC---------CCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 424 AVKELINLEP---------WNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 424 ~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.++.+..... .........+.++.+.|++++|.+.+...+..+
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9988765331 124455666677889999999999998887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1e-06 Score=84.36 Aligned_cols=377 Identities=13% Similarity=0.119 Sum_probs=229.9
Q ss_pred chhHHHhHHHHHhhcCChhHHHHHhccCCC-CCc-----chHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHH
Q 042503 33 SNLILAHFVSVCGTLNEIKYATKIFNQMRN-PSV-----LLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPL 106 (477)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 106 (477)
||......+.++...+-..+-+++++++.- +++ ..-|.|+-.-.+. +..+..+..+++-..+ .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------H
Confidence 455555555666666666666666665542 222 2223333333332 3344444444444332 121 2
Q ss_pred HHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHH
Q 042503 107 LKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGL 186 (477)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 186 (477)
...++..+-+++|..+|+.. ..+......|++ .-+..+.|.+.-++..+|. +|..+..+-.+.|.+.+|+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p~--vWsqlakAQL~~~~v~dAi 1124 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEPA--VWSQLAKAQLQGGLVKDAI 1124 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCChH--HHHHHHHHHHhcCchHHHH
Confidence 33344455556666666553 223344444443 3356666666666665544 5777788888888888887
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccc
Q 042503 187 YLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRK 266 (477)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 266 (477)
+-|-+.. |+..|..++....+.|.|++-.+++.-.++..-.|... ..++-+|++.++..+.+.+.. -|
T Consensus 1125 eSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~--------gp 1192 (1666)
T KOG0985|consen 1125 ESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA--------GP 1192 (1666)
T ss_pred HHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc--------CC
Confidence 7775543 44567777888888888888888777666665555443 356667777777666555442 34
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 042503 267 VVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH 346 (477)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 346 (477)
+..-...+.+-+...|.++.|.-+|. ++..|..+...+...|+++.|...-++ ..+..||..+-.+|..
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRK------Ans~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARK------ANSTKTWKEVCFACVD 1261 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHhc
Confidence 44444677777777788887777665 445678888888888888888776554 3367788888888888
Q ss_pred cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHH
Q 042503 347 AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHA 424 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 424 (477)
.+.+..|. |. ...+-....-...++.-|...|.+++.+.+++.. |...- ...|..+.-.|.+- ++++..+.
T Consensus 1262 ~~EFrlAQ-----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1262 KEEFRLAQ-----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred hhhhhHHH-----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence 77765542 32 1223344556778999999999999999999887 65433 34566565555443 45555555
Q ss_pred HHHHHh-cC-C------CCCchHHHHHHHHHhcCCchHHHH
Q 042503 425 VKELIN-LE-P------WNSGNYVLLSNIYAEGGRWDDAET 457 (477)
Q Consensus 425 ~~~~~~-~~-p------~~~~~~~~l~~~~~~~g~~~~A~~ 457 (477)
++-... .+ | +....|..+...|.+-..|+.|.-
T Consensus 1335 l~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1335 LKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 554432 11 1 224567777777777777776643
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-07 Score=90.41 Aligned_cols=427 Identities=15% Similarity=0.058 Sum_probs=259.9
Q ss_pred hhcccc-hhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCc--c
Q 042503 28 HKLHQS-NLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDE--Y 101 (477)
Q Consensus 28 ~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~ 101 (477)
....++ ...|..+...|+...+...|.+.|++.-+ .+..++....+.|++..+++.|..+.-..-+.. +.-. .
T Consensus 485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~ 563 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKE 563 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHh
Confidence 333344 34788888888888899999999998766 566788899999999999999999833322211 1111 1
Q ss_pred cHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCch-HHhH--HHHHHHHh
Q 042503 102 TFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDV-IVRN--LMIHGFCK 178 (477)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~l~~~~~~ 178 (477)
.|....-.+...++..++..-|+...+..+. |...|..++++|.++|++..|.++|.+...-++ ..|. -..-..+.
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 2333334456778899999999998886555 778899999999999999999999987765222 2222 22334566
Q ss_pred cCChHHHHHHHHhcCC---------C-ChhhHHHHHHHHHhcCChhHHHHHHHHH-------HHcCCCCCHHHHHHHHHH
Q 042503 179 KGDVDKGLYLFREMRE---------R-SVVSWNLMISSLGKSGRDSEALRLFHEM-------RDQAFELDEATVVAVLPI 241 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~~---------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m-------~~~~~~~~~~~~~~l~~~ 241 (477)
.|++.+|...+..+.. . -..++-.+...+.-.|-..++.+.++.- .......+...|..+-++
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda 722 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA 722 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH
Confidence 8899999888887753 0 1112222233333333333333333322 211111111112111111
Q ss_pred -----------------------hhccCcc---c---chHHHHHHHHHhCCccchhHHHHHHHHHHHh----c----CCh
Q 042503 242 -----------------------CARLGAV---D---IGQWIHSYAESSGLYRKVVSVGNALVDFYCK----C----GIL 284 (477)
Q Consensus 242 -----------------------~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----~~~ 284 (477)
.-..+.. + .+.+.+-...+. ..++..|..++..|.+ . .+.
T Consensus 723 c~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl---~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 723 CYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL---AIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH---hhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 1111111 1 000111001111 1223334444443333 1 122
Q ss_pred HHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 285 DTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 285 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
..|+..+.+..+ .+...|+.|.-. ...|++.-+...|-+-.... +.+..+|..+.-.+.+..+++.|...|.+.+
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 345666665443 455667766554 55567766666666655543 5567778888878888899999999999887
Q ss_pred hccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHHcCChHHHHH----------H
Q 042503 362 GLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-------SIRPNAAIWGSLLSSCRTHGHVELAEH----------A 424 (477)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~----------~ 424 (477)
. -.|.+...|-.........|+.-++..+|..- +.-|+...|..........|+.++-+. .
T Consensus 878 S--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~a 955 (1238)
T KOG1127|consen 878 S--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLA 955 (1238)
T ss_pred h--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHH
Confidence 3 22555666665555566778888888888763 445666666555555566666655444 3
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 425 VKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
+++.+...|++..+|...+..+-+.+.+.+|.+...+++
T Consensus 956 l~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 956 LSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445556678888899999999999999988888777654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2e-08 Score=98.56 Aligned_cols=211 Identities=13% Similarity=0.095 Sum_probs=175.3
Q ss_pred HHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCC--------CceeHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 255 HSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRK--------NVVSWNAMISGLAFNGRGELGVELYEQMI 326 (477)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 326 (477)
|++..... |.+...|-..+......++.+.|++++++.... -...|.++++.-...|.-+...++|+++.
T Consensus 1447 ferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1447 FERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 34444444 788888999999999999999999999987651 23468888888788888888899999998
Q ss_pred HcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC---CH
Q 042503 327 AKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP---NA 402 (477)
Q Consensus 327 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~ 402 (477)
+.- .....|..|...|.+.+.+++|.++++.|.++.+ .....|..++..+.++.+-++|..+++++ ..-| ..
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 753 2345678889999999999999999999997665 66778999999999999999999999988 3333 34
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSP 471 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 471 (477)
......+..-.+.|+.+++..+|+..+...|...+.|+.+++.-.+.|+.+.++.+|+++++.++++..
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 455666666789999999999999999999999999999999999999999999999999998876543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.6e-07 Score=91.57 Aligned_cols=323 Identities=11% Similarity=0.007 Sum_probs=166.8
Q ss_pred hhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC----C----c--h--HHhHHHHHHHH
Q 042503 110 CLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH----R----D--V--IVRNLMIHGFC 177 (477)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~----~--~--~~~~~l~~~~~ 177 (477)
....|+++.+..+++.+-......+..........+...|++++|...++.... . + . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666555555442211122223333344455566777777766654421 0 1 0 11122234455
Q ss_pred hcCChHHHHHHHHhcCC----CCh----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCC--HHHHHHHHHHhhc
Q 042503 178 KKGDVDKGLYLFREMRE----RSV----VSWNLMISSLGKSGRDSEALRLFHEMRDQAF---ELD--EATVVAVLPICAR 244 (477)
Q Consensus 178 ~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~~~~l~~~~~~ 244 (477)
..|++++|...+++... .+. ...+.+...+...|++++|...+++.....- .+. ...+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67888888887776543 111 2345566677788999999888888764311 111 1233445556677
Q ss_pred cCcccchHHHHHHHHHh----CCc--cchhHHHHHHHHHHHhcCChHHHHHHhccCCC------C--CceeHHHHHHHHH
Q 042503 245 LGAVDIGQWIHSYAESS----GLY--RKVVSVGNALVDFYCKCGILDTARNVFKEIPR------K--NVVSWNAMISGLA 310 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~--~~~~~~~l~~~~~ 310 (477)
.|+++.|...+.+.... +.. +.....+..+...+...|++++|...+++... + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 78888888877766543 110 01122233445556666777777776665432 1 1122333444555
Q ss_pred hcCCchHHHHHHHHHHHcCCCC-CHHHHHH-----HHHHhhccccHHHHHHHHHHhhhccCCCCC---hHHHHHHHHHHH
Q 042503 311 FNGRGELGVELYEQMIAKGVSP-NKATFVG-----VLTCCAHAGLVEKARELFASMTGLHSIVPN---LEHYGCMVDVLG 381 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 381 (477)
..|++++|...+.+........ ....+.. .+..+...|+.+.|...+..... ...... ...+..+..++.
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~-~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK-PEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC-CCCccchhHHHHHHHHHHHHH
Confidence 6677777777776664421010 1111111 11223345666666666655542 110111 011234555666
Q ss_pred hcCCHHHHHHHHHhc-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 382 RSGCVREAYDLIRSM-------SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
..|+.++|...+++. +..++ ..+...+..++...|+.++|...+.++++...
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 667777776666655 11111 13445555566667777777777777766653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-06 Score=83.87 Aligned_cols=408 Identities=12% Similarity=0.072 Sum_probs=263.7
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC------------CCc------
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN------------PSV------ 65 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~~------ 65 (477)
.|..-+-+.+++......++..++.| ..|+.++|++...|..+++-.+- .+.+-+- +|+
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~va 919 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVA 919 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEe
Confidence 34556667788888888899999998 46899999999999887654332 2221110 111
Q ss_pred -----------------chHHHHHHHHHhcCCCchHHHHH-----------HHHHhCCCC--CCcccHHHHHHHhhccCC
Q 042503 66 -----------------LLFNSMIKAYSLNGPSEEPVKLF-----------ALLKNLGIW--PDEYTFAPLLKACLGVGD 115 (477)
Q Consensus 66 -----------------~~~~~l~~~~~~~~~~~~a~~~~-----------~~~~~~~~~--p~~~~~~~l~~~~~~~~~ 115 (477)
..|....+-+.+..+.+--.+++ ++..+.+++ .|+...+.-+.++...+-
T Consensus 920 YerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 920 YERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred ecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 11233333444455544433333 122222222 244455556666666666
Q ss_pred chhHHHHHHHHHHhc--ccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcC
Q 042503 116 LRVGQCVHGEIIRSG--FERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR 193 (477)
Q Consensus 116 ~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 193 (477)
..+-.++++.++-.+ +.-+...-+.|+- -+-.-+...+.+..+++..-|.. .+.......+-+++|..+|++..
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiL-tAikad~trVm~YI~rLdnyDa~---~ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLIL-TAIKADRTRVMEYINRLDNYDAP---DIAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHH-HHhhcChHHHHHHHHHhccCCch---hHHHHHhhhhHHHHHHHHHHHhc
Confidence 677777777665321 1112222333332 22334455566666655541111 11222333444555555555432
Q ss_pred C-------------------------CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc
Q 042503 194 E-------------------------RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAV 248 (477)
Q Consensus 194 ~-------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (477)
- ..+..|..+..+-.+.|...+|++-|-+ ..|+..|..+++.+.+.|.+
T Consensus 1076 ~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~ 1149 (1666)
T KOG0985|consen 1076 MNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKY 1149 (1666)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcH
Confidence 1 2345788999999999999888877643 23677899999999999999
Q ss_pred cchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 042503 249 DIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK 328 (477)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 328 (477)
+.-..++..+.+... .+... ..|+-+|++.++..+-++++. .||......+.+-|...|.++.|.-+|...
T Consensus 1150 edLv~yL~MaRkk~~-E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--- 1220 (1666)
T KOG0985|consen 1150 EDLVKYLLMARKKVR-EPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--- 1220 (1666)
T ss_pred HHHHHHHHHHHHhhc-Cccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---
Confidence 999999888887764 44333 588999999999888777654 477777788888888888888887776543
Q ss_pred CCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCC--CCCHHHHH
Q 042503 329 GVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSI--RPNAAIWG 406 (477)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~p~~~~~~ 406 (477)
.-|..|...+...|+++.|.+.-++. .+..+|...-.+|...+.+.-| +-.|. -....-+.
T Consensus 1221 ------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlA----QiCGL~iivhadeLe 1283 (1666)
T KOG0985|consen 1221 ------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLA----QICGLNIIVHADELE 1283 (1666)
T ss_pred ------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHH----HhcCceEEEehHhHH
Confidence 34667777788888888887755443 3567888888888776655433 22232 23455677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
.++..|...|-+++.+.+++..+.+...+-..|..|+-.|.+-.
T Consensus 1284 eli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1284 ELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999988777788888888877653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.8e-08 Score=85.56 Aligned_cols=397 Identities=14% Similarity=0.063 Sum_probs=211.9
Q ss_pred HHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCC-cccHHHHHHHhhccCCch
Q 042503 42 SVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPD-EYTFAPLLKACLGVGDLR 117 (477)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~ 117 (477)
.+....|+++.|+.+|.+... +|...|+.-..+|+..|++++|++=-.+-++ +.|+ +..|+....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 455677888888888886654 5667788888888888888888877776666 4566 447888888888888888
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHH-----HHHHHhcCChHHHHHHHHhc
Q 042503 118 VGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLM-----IHGFCKKGDVDKGLYLFREM 192 (477)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~a~~~~~~~ 192 (477)
+|...|.+-++..+. +...+..+.+++. .+.+. -+.. .+...|..+ .+.+...-.+..-++.+..-
T Consensus 88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~----~~~~~--~~~~--~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-NKQLKTGLAQAYL----EDYAA--DQLF--TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred HHHHHHHHHhhcCCc-hHHHHHhHHHhhh----HHHHh--hhhc--cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 888888887775333 5566777777661 11111 1111 122222221 22222222222222222221
Q ss_pred CCCChhh---HHHHHHHHHhcCChh-HHHHHHHHH-HHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccch
Q 042503 193 RERSVVS---WNLMISSLGKSGRDS-EALRLFHEM-RDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKV 267 (477)
Q Consensus 193 ~~~~~~~---~~~l~~~~~~~~~~~-~a~~~~~~m-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 267 (477)
+. ++.. ...++.+.......+ .....-..+ ...+..|. .+.. ..................
T Consensus 159 p~-~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~~---~~~~~~~d~~ee~~~k~~ 223 (539)
T KOG0548|consen 159 PT-SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQEH---NGFPIIEDNTEERRVKEK 223 (539)
T ss_pred cH-hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------cccC---CCCCccchhHHHHHHHHh
Confidence 11 0000 011111111100000 000000000 00001111 0000 000000000000000011
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHH------
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVG------ 339 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~------ 339 (477)
..-...++++..+..+++.|...+....+ .++.-++....++...|.+..+........+.| .-...-|+.
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~ 302 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALA 302 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHH
Confidence 11123455555555566666655554443 233334444555556666555555555555444 112222222
Q ss_pred -HHHHhhccccHHHHHHHHHHhhhccCCCCChH-------------------------HHHHHHHHHHhcCCHHHHHHHH
Q 042503 340 -VLTCCAHAGLVEKARELFASMTGLHSIVPNLE-------------------------HYGCMVDVLGRSGCVREAYDLI 393 (477)
Q Consensus 340 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~~l~~~~~~~g~~~~A~~~~ 393 (477)
+..++.+.++++.++..|++....+ ..|+.. -...-...+.+.|++..|++.|
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~-Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Y 381 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEH-RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHY 381 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhh-cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 2223444455666666665554211 122211 1111245567889999999999
Q ss_pred Hhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 394 RSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 394 ~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.++ ...| |...|..-.-+|.+.|.+..|+.-.+..++++|.....|..=+.++....+|++|.+.|++-++.+
T Consensus 382 teAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998 3344 557889999999999999999999999999999988899998999999999999999998887765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.9e-08 Score=83.73 Aligned_cols=183 Identities=10% Similarity=-0.068 Sum_probs=115.8
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CC-c---eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCH---H
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KN-V---VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNK---A 335 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~ 335 (477)
+.....+..++..+...|+++.|...|+++.. |+ + ..+..+..++...|++++|...++++.+.. +.+. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 44555566677777777777777777776654 22 1 245556667777777777777777777653 1111 1
Q ss_pred HHHHHHHHhhcc--------ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHH
Q 042503 336 TFVGVLTCCAHA--------GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGS 407 (477)
Q Consensus 336 ~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 407 (477)
++..+..++... |+++.|.+.|+.+.... +.+...+..+..... ..... ......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH-----------HHHHHH
Confidence 344444445443 56677777777776321 122222221111100 00000 001124
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPWN---SGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+...+.+.|++++|...++++++..|++ +..+..++.++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677889999999999999999987765 468999999999999999999999988765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.4e-07 Score=76.24 Aligned_cols=309 Identities=9% Similarity=0.036 Sum_probs=181.7
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHH---HHHhhccCCchhHHHHHHHHHHhcccCcchH-HHHHHHHH
Q 042503 70 SMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPL---LKACLGVGDLRVGQCVHGEIIRSGFERFGSI-RIGVVELY 145 (477)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~ 145 (477)
-+.+.+..+|++..|+.-|....+. |+..|..+ ...|...|+-..|..=+...++ ++||... ...-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 3555666666666676666666542 33333333 3445556666666655555555 2333221 11222345
Q ss_pred HhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042503 146 TSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRD 225 (477)
Q Consensus 146 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 225 (477)
.++|+++.|..-|+.+.+.+.. .|...+|.+-+..+. ........+..+...|+...|+.....+++
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~--e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ--EHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH--HHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 5666666666666655542110 000000100000000 000112233445556777777777777766
Q ss_pred cCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCce-----
Q 042503 226 QAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVV----- 300 (477)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----- 300 (477)
-. +.|...+..-..+|...|++..|+.-++.+.+.. .++...+..+...+...|+.+.++...++..+-|+.
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf 260 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCF 260 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHH
Confidence 52 5566666666777777777777777777666666 556666667777777778888777777776653332
Q ss_pred -eHHHH---------HHHHHhcCCchHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCC
Q 042503 301 -SWNAM---------ISGLAFNGRGELGVELYEQMIAKGVSPN---KATFVGVLTCCAHAGLVEKARELFASMTGLHSIV 367 (477)
Q Consensus 301 -~~~~l---------~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 367 (477)
.|..+ +......++|.++++..+...+...... ...+..+-.++...+++-+|++...++.. -.+
T Consensus 261 ~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~ 338 (504)
T KOG0624|consen 261 PFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCc
Confidence 12111 2234567788888888888777642212 22345566677888999999999999983 224
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH
Q 042503 368 PNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA 402 (477)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 402 (477)
.|+.++---..+|.-...++.|+.-|+.. ...++.
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 45778877888999999999999999988 545543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.7e-06 Score=78.86 Aligned_cols=194 Identities=14% Similarity=0.147 Sum_probs=131.8
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccc
Q 042503 173 IHGFCKKGDVDKGLYLFREMRERSVV--SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDI 250 (477)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (477)
+.+......+.+|+.+++.+.+.++. -|..+...|...|+++.|.++|-+.- .++-.+..|.+.|+|..
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34555678888888888888765443 47778888888999999988886532 34456777888888888
Q ss_pred hHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 042503 251 GQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV 330 (477)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 330 (477)
|.++-.+.. |. ......|-+-..-+-+.|++.+|.++|-.+..|+. .|..|-+.|..+..+++..+-.-.
T Consensus 810 a~kla~e~~--~~-e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d-- 879 (1636)
T KOG3616|consen 810 AFKLAEECH--GP-EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD-- 879 (1636)
T ss_pred HHHHHHHhc--Cc-hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh--
Confidence 877655433 22 45566666667777888999999999988888874 467788888888888877664321
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
.-..|-..+..-+...|+...|+.-|-+.. -|..-+.+|...+-+++|.++-+.-
T Consensus 880 -~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakte 934 (1636)
T KOG3616|consen 880 -HLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTE 934 (1636)
T ss_pred -hhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcc
Confidence 123355556666777778777777665544 1333445555556666665555443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-06 Score=81.15 Aligned_cols=234 Identities=14% Similarity=0.108 Sum_probs=148.9
Q ss_pred chhHHHhHH--HHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhC-C-------C-CCCcc
Q 042503 33 SNLILAHFV--SVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNL-G-------I-WPDEY 101 (477)
Q Consensus 33 ~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~-~p~~~ 101 (477)
|+.+-.+++ +.|..-|+.|.|.+-.+.+++ ...|..+.+.|.+.++.+-|.-.+-.|... | . .|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 445555554 456778999999887776654 457999999999999888887777766542 1 1 122 3
Q ss_pred cHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC-CchHHhHHHHHHHHhcC
Q 042503 102 TFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-RDVIVRNLMIHGFCKKG 180 (477)
Q Consensus 102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~ 180 (477)
+=..+.-..+..|.+++|+.+|++..+.+ .|=..|-..|.+++|.++-+.-.. .=..+|......+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 33333344467789999999998876642 344567788999999998776443 22346666667777788
Q ss_pred ChHHHHHHHHhcCCC-----------------------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 042503 181 DVDKGLYLFREMRER-----------------------SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVA 237 (477)
Q Consensus 181 ~~~~a~~~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (477)
+.+.|++.|++...+ |...|.-....+-..|+.+.|+.+|....+ |-.
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 999999999886542 222333333444445555555555554432 334
Q ss_pred HHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccC
Q 042503 238 VLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEI 294 (477)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (477)
+++..+-.|+.++|.++-++ ..+..+...|.+.|-..|++.+|..+|.+.
T Consensus 944 ~VrI~C~qGk~~kAa~iA~e-------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEE-------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred heeeEeeccCchHHHHHHHh-------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45555556666666655543 333444455666666666666666666554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.6e-08 Score=79.70 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=82.3
Q ss_pred cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHH-HHcCC--hHHH
Q 042503 347 AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSC-RTHGH--VELA 421 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a 421 (477)
.++.+++...++...+. -+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666666532 2566677777777777777777777777777 4444 445666666653 55565 4777
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVK 468 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (477)
.++++++++.+|.++.++..++..+.+.|++++|+..|+++++...+
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 77777777777777777777777777777777777777777766533
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.98 E-value=2e-06 Score=78.53 Aligned_cols=265 Identities=12% Similarity=0.023 Sum_probs=172.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHH-HHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH--
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQA-FELDEATVV-AVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA-- 273 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-- 273 (477)
..|..+...+...|+.+.+...+....... ..++..... .....+...|+++.+..+++.+.+.. |.+...+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhH
Confidence 456667777777888888777666655432 122332222 22334577899999999999999886 666655442
Q ss_pred -HHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc
Q 042503 274 -LVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL 349 (477)
Q Consensus 274 -l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 349 (477)
........+..+.+.+.+......++ .....+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 22222234566666666665333223 233445567889999999999999999976 6667788889999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC--C-HHHH-H--HHHHHHHHcCChHH
Q 042503 350 VEKARELFASMTGLHSIVPNL--EHYGCMVDVLGRSGCVREAYDLIRSM-SIRP--N-AAIW-G--SLLSSCRTHGHVEL 420 (477)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--~-~~~~-~--~l~~~~~~~~~~~~ 420 (477)
+++|...+++........|+. ..|..+...+...|++++|.+++++. ...| . .... + .++.-+...|....
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988433222332 34557888999999999999999997 3233 1 2111 1 22333444554444
Q ss_pred HHHHHHHHHh----cCCCC--CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 421 AEHAVKELIN----LEPWN--SGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 421 a~~~~~~~~~----~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+.+. +.+.. ..|.. .......+.++...|+.++|...++.+....
T Consensus 244 ~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 244 GDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4333 22221 11221 2233367777889999999999999987643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.8e-07 Score=92.10 Aligned_cols=226 Identities=14% Similarity=0.094 Sum_probs=182.3
Q ss_pred cchHHHHHHHHHHhcCChhhHHHHhcccCC--------CchHHhHHHHHHHHhcCChHHHHHHHHhcCC-CC-hhhHHHH
Q 042503 134 FGSIRIGVVELYTSCGQMDDGMKVFDEMSH--------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE-RS-VVSWNLM 203 (477)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~l 203 (477)
+...|...|......++.++|.++.++... .-...|.++++.-..-|.-+...++|++..+ -| ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 566788899999999999999999998765 2345788888888888988899999999887 23 4578899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCC
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI 283 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (477)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++.+.-............+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 99999999999999999999887 34667788899999999999999999999998876433467777788888899999
Q ss_pred hHHHHHHhccCCCC---CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccccHHHHHHHHH
Q 042503 284 LDTARNVFKEIPRK---NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNK--ATFVGVLTCCAHAGLVEKARELFA 358 (477)
Q Consensus 284 ~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~ 358 (477)
.+.++.+|+..... -...|+..++.-.++|+.+.+..+|++....+++|-. +.|...+..--+.|+-..++.+=.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKa 1695 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKA 1695 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 99999999988753 4578999999999999999999999999998887753 345555655455566554444443
Q ss_pred Hh
Q 042503 359 SM 360 (477)
Q Consensus 359 ~~ 360 (477)
++
T Consensus 1696 rA 1697 (1710)
T KOG1070|consen 1696 RA 1697 (1710)
T ss_pred HH
Confidence 33
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.5e-07 Score=73.45 Aligned_cols=189 Identities=13% Similarity=0.094 Sum_probs=122.6
Q ss_pred chHHHHHHHHHHhcCChhhHHHHhcccCC--C-chHHhHHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHH-HHHHHH
Q 042503 135 GSIRIGVVELYTSCGQMDDGMKVFDEMSH--R-DVIVRNLMIHGFCKKGDVDKGLYLFREMRE--RSVVSWNL-MISSLG 208 (477)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-l~~~~~ 208 (477)
..-+.+.+.-+.+..++..|++++..-.+ | +....+.+..+|....++..|-..++++.. |...-|.. -...+.
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 33456666667788889999998877665 3 556677888888899999999999988876 44444432 345667
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHH--HHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHH
Q 042503 209 KSGRDSEALRLFHEMRDQAFELDEATVVAVL--PICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDT 286 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (477)
+.+.+..|+++...|.+. |+...-..-+ ......+++..+..+.++....+ +..+.....-...+.|++++
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHH
Confidence 788899999988877653 2222111112 22345677777777776654322 22233444555667778888
Q ss_pred HHHHhccCCC----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 042503 287 ARNVFKEIPR----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVS 331 (477)
Q Consensus 287 a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 331 (477)
|..-|+...+ .....||..+ ++.+.|+++.|+++..+++++|++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 8877777665 2334555444 344567777888888888777754
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-05 Score=71.76 Aligned_cols=130 Identities=14% Similarity=0.053 Sum_probs=84.8
Q ss_pred ccchhHHHhHHHHHhhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHH
Q 042503 31 HQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--P-SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLL 107 (477)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 107 (477)
|-|+..|..+++-+... .++++++.++++.. | ....|..-|..-.+.++++...++|.+.... ..+...|..-+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHH
Confidence 56888999999987776 99999999999876 3 4578999999999999999999999998875 34566666655
Q ss_pred HHhhc-cCCchhHH----HHHHHHH-HhcccC-cchHHHHHHHH---------HHhcCChhhHHHHhcccCC
Q 042503 108 KACLG-VGDLRVGQ----CVHGEII-RSGFER-FGSIRIGVVEL---------YTSCGQMDDGMKVFDEMSH 163 (477)
Q Consensus 108 ~~~~~-~~~~~~a~----~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~ 163 (477)
.---+ .++...+. +.|+-.+ +.|+++ +...|+..+.. |..+.+++...+++.++..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 54322 23333322 2333332 345443 23345544433 2333455566666666554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-07 Score=85.36 Aligned_cols=250 Identities=14% Similarity=0.028 Sum_probs=190.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCC
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI 283 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (477)
..-+.+.|+..+|.-.|+...+.. +-+...|..|....+..++-..|+..+.+..+.. |.+..+...|.-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhh
Confidence 345678899999999999888774 4467778888888888899999999999999998 8999999999999999999
Q ss_pred hHHHHHHhccCCCCCc-eeHHHHH---------HHHHhcCCchHHHHHHHHH-HHcCCCCCHHHHHHHHHHhhccccHHH
Q 042503 284 LDTARNVFKEIPRKNV-VSWNAMI---------SGLAFNGRGELGVELYEQM-IAKGVSPNKATFVGVLTCCAHAGLVEK 352 (477)
Q Consensus 284 ~~~a~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~a~~~~~~m-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (477)
-..|...+++-....+ ..|.... ..+..........++|-++ ...+..+|......|.-.|--.|++++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9999988876532111 0000000 0111111223344444444 445545788888888888999999999
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
|.+.|+.+... -|-|...||.|...++...+.++|+..|+++ .++|+. .+...|+-+|...|.+++|...|-.++.
T Consensus 449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999842 2567789999999999999999999999999 888886 5778889999999999999999999987
Q ss_pred cCCC-----C-----CchHHHHHHHHHhcCCchHHHHH
Q 042503 431 LEPW-----N-----SGNYVLLSNIYAEGGRWDDAETL 458 (477)
Q Consensus 431 ~~p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 458 (477)
+.+. . ..+|..|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 6533 1 24777777778888887755443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.5e-08 Score=74.56 Aligned_cols=105 Identities=10% Similarity=-0.085 Sum_probs=55.8
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcC
Q 042503 339 GVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHG 416 (477)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 416 (477)
.+..++...|++++|...|+..... -+.+...|..+..++.+.|++++|...|++. ...| +...+..++.++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3444555555555555555555521 1334455555555555555555555555555 2222 3345555555555555
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 417 HVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
++++|+..|+++++..|+++..+...+.+
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 55555555555555555555555444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-06 Score=77.02 Aligned_cols=213 Identities=12% Similarity=0.004 Sum_probs=140.7
Q ss_pred CcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcC-ChHHHHHHhccCCCC---CceeHHHHHHHHHhcCCc--hHHH
Q 042503 246 GAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCG-ILDTARNVFKEIPRK---NVVSWNAMISGLAFNGRG--ELGV 319 (477)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~a~ 319 (477)
+..++|..+..++.+.. |.+..+|.....++...| ++++++..++++.+. +..+|+.....+.+.|+. ++++
T Consensus 51 e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 51 ERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 34445555555555555 566666665555566666 467777777766542 334455544445555543 5678
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhc---CC----HHHHHHH
Q 042503 320 ELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRS---GC----VREAYDL 392 (477)
Q Consensus 320 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~ 392 (477)
.+++++.+.. +-|..+|+....++...|+++++++.++++.+.. +.+...|+.....+.+. |. .++++..
T Consensus 129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 8888888776 5577888888888888888888888888887432 34455565555444443 22 2456666
Q ss_pred HHhc-CCCC-CHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC----------------
Q 042503 393 IRSM-SIRP-NAAIWGSLLSSCRTH----GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG---------------- 450 (477)
Q Consensus 393 ~~~~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------- 450 (477)
..++ ...| |...|+.+...+... +...+|.+.+.++.+.+|.++.+...|+..|+...
T Consensus 206 ~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~ 285 (320)
T PLN02789 206 TIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEE 285 (320)
T ss_pred HHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccc
Confidence 6555 4444 446777777777663 34567888999988889999999999999998643
Q ss_pred --CchHHHHHHHHHH
Q 042503 451 --RWDDAETLRMWMR 463 (477)
Q Consensus 451 --~~~~A~~~~~~~~ 463 (477)
..++|.++++.+.
T Consensus 286 ~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 286 LSDSTLAQAVCSELE 300 (320)
T ss_pred cccHHHHHHHHHHHH
Confidence 2367888888883
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.6e-06 Score=85.62 Aligned_cols=57 Identities=7% Similarity=0.048 Sum_probs=25.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 305 MISGLAFNGRGELGVELYEQMIAK----GVSP-NKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
+..++...|++++|...+++.... |..+ ...+...+..++...|+.++|...+.+..
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al 758 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL 758 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444555555555555544332 1111 11233334444455555555555555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=72.63 Aligned_cols=107 Identities=8% Similarity=-0.100 Sum_probs=90.1
Q ss_pred HHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 355 ELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
..+++..+ ..|+ .+..+...+...|++++|...|+.. ...| +...+..++.++...|++++|...|+++++.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555552 2344 3556778889999999999999998 5444 56788999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 433 PWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 433 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
|.++..+..++.++...|++++|+..+++.++..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.4e-07 Score=82.43 Aligned_cols=206 Identities=9% Similarity=0.071 Sum_probs=127.7
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchH
Q 042503 173 IHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQ 252 (477)
Q Consensus 173 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (477)
...+...|-...|..+|++. ..|..++..|...|+..+|..+..+-.+ -+||+..|..+.+......-+++|.
T Consensus 405 aell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkaw 477 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAW 477 (777)
T ss_pred HHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHH
Confidence 34444445555555555442 3355555566666666666666555554 2556655555555554444455555
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCC---CceeHHHHHHHHHhcCCchHHHHHHHHHHHcC
Q 042503 253 WIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRK---NVVSWNAMISGLAFNGRGELGVELYEQMIAKG 329 (477)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 329 (477)
++.+..-.. +...+.....+.+++.++.+.|+.-.+- -..+|.....+..+.++++.|.+.|..-....
T Consensus 478 Elsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~ 549 (777)
T KOG1128|consen 478 ELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE 549 (777)
T ss_pred HHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence 544433221 1123333344467777777777765543 33567777777777888888888887776643
Q ss_pred CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 330 VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
+.+...||.+-.+|.+.++..+|...+++..+ .+ ..+...|.+.+....+.|.+++|++.+.++
T Consensus 550 -Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 550 -PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred -CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 55567788888888888888888888888773 44 455667777777778888888888887777
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3e-06 Score=68.94 Aligned_cols=147 Identities=9% Similarity=0.030 Sum_probs=101.3
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH----h
Q 042503 307 SGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG----R 382 (477)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 382 (477)
..|+..|++++|++..+... +......=...+.+..+.+.|.+.++.|.+ -.+..+.+-|..++. .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhcc
Confidence 45677788888887776621 122222223445667778888888888873 244455665555554 3
Q ss_pred cCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHH-HHH
Q 042503 383 SGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAE-TLR 459 (477)
Q Consensus 383 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~ 459 (477)
.+...+|.-+|+++ +..|+..+.+....++...|++++|..+++.++..++.+|.+...++-.-...|...++. +.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 45678888888888 467888888888888888888888888888888888888888888887777777765543 344
Q ss_pred HHHH
Q 042503 460 MWMR 463 (477)
Q Consensus 460 ~~~~ 463 (477)
.++.
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.5e-07 Score=72.68 Aligned_cols=155 Identities=13% Similarity=0.104 Sum_probs=119.8
Q ss_pred HHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHH
Q 042503 274 LVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKA 353 (477)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (477)
-+..|...|+++.+....+.+..+.. .+...++.+++...++...+.+ +.|...|..+...|...|+++.|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 34567777887776555433322210 1123566788888888888876 78899999999999999999999
Q ss_pred HHHHHHhhhccCCCCChHHHHHHHHHH-HhcCC--HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 354 RELFASMTGLHSIVPNLEHYGCMVDVL-GRSGC--VREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
...|++..... +.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+.+.|++++|+..|+++
T Consensus 93 ~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998432 55777888888864 67777 59999999999 5555 5678899999999999999999999999
Q ss_pred HhcCCCCCchH
Q 042503 429 INLEPWNSGNY 439 (477)
Q Consensus 429 ~~~~p~~~~~~ 439 (477)
++..|.+..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99998765443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-06 Score=81.58 Aligned_cols=185 Identities=11% Similarity=0.020 Sum_probs=118.4
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccH
Q 042503 273 ALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLV 350 (477)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (477)
..+.+|...|+..+|..+..+..+ |++..|..+++......-+++|.++.+....+ .-..+.....+.+++
T Consensus 429 ~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~f 501 (777)
T KOG1128|consen 429 PVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDF 501 (777)
T ss_pred HHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhH
Confidence 444555555555555444443332 34444444444444333344444444332221 111111112234666
Q ss_pred HHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 351 EKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
+++.+.|+.-.+.. +....+|-.+.-+..+.+++..|.+.|... ...||. ..||++..+|.+.|+-.+|...++++
T Consensus 502 s~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 502 SEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred HHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 66666666555322 334456777777778888899888888887 556665 78999999999999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 429 INLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
++.+-.+...|....-+..+.|.+++|.+.+.++.+..
T Consensus 580 lKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 580 LKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 98887778888888888889999999999988887643
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-06 Score=71.18 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=129.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR 382 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (477)
..+-..+...|+-+....+........ +-+.......+....+.|++..|...+.+.. ..-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHH
Confidence 555667777888888888777755432 4455566668888889999999999999998 3458889999999999999
Q ss_pred cCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 042503 383 SGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRM 460 (477)
Q Consensus 383 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (477)
.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|..++..+....+.+...-..++.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 99999999988887 5444 446788899999999999999999999998888889999999999999999999987765
Q ss_pred HH
Q 042503 461 WM 462 (477)
Q Consensus 461 ~~ 462 (477)
.-
T Consensus 227 ~e 228 (257)
T COG5010 227 QE 228 (257)
T ss_pred cc
Confidence 43
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.5e-07 Score=75.55 Aligned_cols=182 Identities=12% Similarity=-0.001 Sum_probs=129.2
Q ss_pred CCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchh---HHHHHHHHHHHhcCChHHHHHHhccCCC--CC-ce---
Q 042503 230 LDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVV---SVGNALVDFYCKCGILDTARNVFKEIPR--KN-VV--- 300 (477)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~~--- 300 (477)
.....+......+...|+++.|...++.+.... |.++ .++..+..++...|++++|...++++.+ |+ ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 355667778888999999999999999998876 4433 4667889999999999999999999875 32 22
Q ss_pred eHHHHHHHHHhc--------CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHH
Q 042503 301 SWNAMISGLAFN--------GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEH 372 (477)
Q Consensus 301 ~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (477)
++..+..++... |++++|...++.+.... +-+......+..... ... ... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~~---------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RLA---------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HHH---------HH
Confidence 355555666554 77889999999998763 323333322221110 000 000 01
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-SIRP----NAAIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
...+...|.+.|++++|+..+++. ...| ....+..++.++...|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 124667788999999999999888 2222 346888999999999999999999888876665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-06 Score=70.09 Aligned_cols=160 Identities=14% Similarity=0.056 Sum_probs=130.6
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
|.+..+ ..+...+...|+-+.+..+..+... .|.......+....+.|++..|+..+++..... ++|...|+.+.
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 566666 6777888888888888888777543 244455668888899999999999999998875 88999999999
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChH
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~ 419 (477)
-+|.+.|+.+.|..-|.+..+.. +-+...++.|...|.-.|+++.|..++... .-.-|..+-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 99999999999999999988644 345567888999999999999999999988 32336778888888999999999
Q ss_pred HHHHHHHHH
Q 042503 420 LAEHAVKEL 428 (477)
Q Consensus 420 ~a~~~~~~~ 428 (477)
+|+.+...-
T Consensus 220 ~A~~i~~~e 228 (257)
T COG5010 220 EAEDIAVQE 228 (257)
T ss_pred HHHhhcccc
Confidence 998886653
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.2e-06 Score=84.78 Aligned_cols=132 Identities=14% Similarity=0.011 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHH
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSL 408 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l 408 (477)
+.+...+..|.....+.|.+++|..+++.+.+.. +.+......+...+.+.+++++|...+++. ...|+. .....+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 3345555555555555666666666666555311 223334445555555666666666655555 333333 344455
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 409 LSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
..++.+.|++++|..+|+++...+|+++.++..++.++...|+.++|...|++.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555566666666666666655555556666666666666666666666655544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.7e-06 Score=75.92 Aligned_cols=195 Identities=12% Similarity=0.102 Sum_probs=145.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcC-CchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 042503 270 VGNALVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNG-RGELGVELYEQMIAKGVSPNKATFVGVLTCCA 345 (477)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 345 (477)
++..+-..+...++.++|+....++.+.++ .+|+....++...| ++++++..++++.+.+ +-+..+|+.-..++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 334455556667888899999988876443 45665666666777 5799999999999876 556667776655555
Q ss_pred cccc--HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHc---CC-
Q 042503 346 HAGL--VEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTH---GH- 417 (477)
Q Consensus 346 ~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~---~~- 417 (477)
+.|. .+++..+++++.+.. +-+..+|+...-++...|+++++++.++++ .. ..|...|+.....+.+. |.
T Consensus 118 ~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 6665 367788888887432 567788888888888999999999999998 33 44567787777666554 22
Q ss_pred ---hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc----CCchHHHHHHHHHHhCCC
Q 042503 418 ---VELAEHAVKELINLEPWNSGNYVLLSNIYAEG----GRWDDAETLRMWMRENNV 467 (477)
Q Consensus 418 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~ 467 (477)
.++.+....+++..+|.+..+|..+..++... ++..+|.+.+.+....++
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 25678888899999999999999999999883 455778888888776543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-05 Score=64.06 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=112.3
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----c
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH----A 347 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~ 347 (477)
..-...|+..|++++|++...... +....-.=...+.+..+.+-|...+++|.+-. +..|.+.|..++.+ .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence 344556778888888888877732 33333333455667778888999999998643 56677766666543 4
Q ss_pred ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCCh-HHHHHH
Q 042503 348 GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHV-ELAEHA 424 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~ 424 (477)
+.+..|.-+|+++.+ ..+|+..+.+....++...|++++|..++++. ....++.++..++..-...|.. +...+.
T Consensus 187 ek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 568889999999984 34788888888888899999999999999888 4455677777777666666655 445667
Q ss_pred HHHHHhcCCCCC
Q 042503 425 VKELINLEPWNS 436 (477)
Q Consensus 425 ~~~~~~~~p~~~ 436 (477)
+.......|.++
T Consensus 265 l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 265 LSQLKLSHPEHP 276 (299)
T ss_pred HHHHHhcCCcch
Confidence 777777777644
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.3e-07 Score=68.48 Aligned_cols=93 Identities=20% Similarity=0.175 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
...+...+...|++++|.+.|+.. ...| +...+..+...+...|++++|...++++++.+|.++..+..++..|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 334444455555555555555554 2222 33445555555555555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHHHhC
Q 042503 451 RWDDAETLRMWMREN 465 (477)
Q Consensus 451 ~~~~A~~~~~~~~~~ 465 (477)
++++|...+++.++.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 100 EPESALKALDLAIEI 114 (135)
T ss_pred CHHHHHHHHHHHHHh
Confidence 555555555555543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00033 Score=63.24 Aligned_cols=131 Identities=11% Similarity=0.063 Sum_probs=78.1
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSP-NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
.+|-..++.-.+......|..+|.+..+.+..+ +.....+++.-+| .++...|.++|+.=.+.+ ..++.--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf--~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF--GDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 456666666666666666777777776665555 5555566666554 356666777776555333 223333344555
Q ss_pred HHHhcCCHHHHHHHHHhc---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 379 VLGRSGCVREAYDLIRSM---SIRPN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
-+...++-..|..+|++. ++.|+ ...|..++..-..-|+...+..+-++.....|
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 666666666677777666 22333 25677777666667777777666666655444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.7e-07 Score=67.61 Aligned_cols=97 Identities=12% Similarity=-0.064 Sum_probs=84.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
....-.+...+...|++++|.++|+-. ...| +..-|..|..++...|++++|+..|.++..++|++|..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445666778899999999999998 4455 45778899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 042503 448 EGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~ 466 (477)
..|+.+.|.+.|+..+...
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999988764
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.5e-06 Score=80.67 Aligned_cols=227 Identities=10% Similarity=0.064 Sum_probs=151.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH
Q 042503 195 RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATV-VAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA 273 (477)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 273 (477)
.+...+..|+..+...+++++|.++.+...+. .|+...+ ..+...+.+.++...+.-+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~ 88 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------N 88 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------h
Confidence 35567888999999999999999999976665 4544333 2222345555554444333 2
Q ss_pred HHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH
Q 042503 274 LVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE 351 (477)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (477)
++.......++.....+...+.. .+...+..+..+|.+.|+.+++..+|+++.+.. +-|....|.+...+... +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22223333333222333333322 233467788889999999999999999999987 77888899999999888 999
Q ss_pred HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc----------------------CCCCCHHHHHHHH
Q 042503 352 KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM----------------------SIRPNAAIWGSLL 409 (477)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------~~~p~~~~~~~l~ 409 (477)
+|.+++.++... |...+++.++.+++.++ +..--..++..+-
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 999998888742 33333444444444444 2122234455555
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
..|...++++++..+++.+++.+|.|..+...++..|. +.+.. ...+++.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~ 280 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDY 280 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHH
Confidence 66778889999999999999999999999999999987 44444 3444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.3e-08 Score=52.71 Aligned_cols=32 Identities=28% Similarity=0.564 Sum_probs=20.3
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 365 SIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
|+.||..+|+.|+.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666655
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.3e-06 Score=78.00 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=102.2
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHH
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCR 413 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 413 (477)
....++..+...++++.|+.+|+++.+ . .|+ ....++..+...++-.+|++++++. ..+.+...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~-~--~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRE-R--DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHh-c--CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344566667777889999999999884 2 244 4455788888888888999999888 33446677777788899
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 414 THGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
..++++.|+.+.+++++..|.+..+|..|+.+|.+.|+++.|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999988774
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=7e-08 Score=52.78 Aligned_cols=34 Identities=32% Similarity=0.563 Sum_probs=29.8
Q ss_pred cCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 328 KGVSPNKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
+|+.||..||+.++.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788999999999999999999999999998874
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.5e-06 Score=65.46 Aligned_cols=115 Identities=14% Similarity=0.050 Sum_probs=90.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCC
Q 042503 321 LYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIR 399 (477)
Q Consensus 321 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 399 (477)
.+++..... +.+......+...+...|++++|...|+.+... .+.+...+..+...+...|++++|...++.. ...
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455555543 334455667777888899999999999988742 2557788888999999999999999999888 444
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 400 P-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 400 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
| +...+..+...+...|++++|...++++++..|.+...
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 4 56788888889999999999999999999999977653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00083 Score=64.48 Aligned_cols=407 Identities=15% Similarity=0.116 Sum_probs=225.1
Q ss_pred hhcCChhHHHHHhccCCC--CCcchHHHHHHHH--HhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHH
Q 042503 45 GTLNEIKYATKIFNQMRN--PSVLLFNSMIKAY--SLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQ 120 (477)
Q Consensus 45 ~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 120 (477)
...+++..|.....++.+ |+. .|..++.++ .+.|+.++|..+++.....+. -|..|...+-.+|...++.++|.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHH
Confidence 345778888888777665 443 344455544 577888888888877765542 26777888888888888888888
Q ss_pred HHHHHHHHhcccCcchHHHHHHHHHHhcCChh----hHHHHhcccCCCchHHhHHHHHHHHh-cCC---------hHHHH
Q 042503 121 CVHGEIIRSGFERFGSIRIGVVELYTSCGQMD----DGMKVFDEMSHRDVIVRNLMIHGFCK-KGD---------VDKGL 186 (477)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~l~~~~~~-~~~---------~~~a~ 186 (477)
.+|++..... |+......+..+|.+.+++. .|++++....+.--..|+. ++.+.+ ... ..-|.
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHH
Confidence 8888887753 34555566666777766554 3666676665544444443 333322 111 12344
Q ss_pred HHHHhcCCCC--h---hhHHHHHHHHHhcCChhHHHHHHHH-HHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHH
Q 042503 187 YLFREMRERS--V---VSWNLMISSLGKSGRDSEALRLFHE-MRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAES 260 (477)
Q Consensus 187 ~~~~~~~~~~--~---~~~~~l~~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (477)
+.++.+.+.+ . .-...-...+...|++++|+.++.. ..+.-..-+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5555554432 1 1112222344567778888888743 33333333444445666777778888888888888888
Q ss_pred hCCccchhHHHHHHHHHHH----------------hcCChHHHHHHhccCCCC-CceeHHHHHHHHH---hcCCchHHHH
Q 042503 261 SGLYRKVVSVGNALVDFYC----------------KCGILDTARNVFKEIPRK-NVVSWNAMISGLA---FNGRGELGVE 320 (477)
Q Consensus 261 ~~~~~~~~~~~~~l~~~~~----------------~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~a~~ 320 (477)
.+ +++ |...+..+. ..+..+...+...+.... .-..|-+-+.+.. .-|+.+++..
T Consensus 255 k~--~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 255 KG--NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred hC--Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHH
Confidence 77 444 222222111 112222222222222211 1122333333333 2355555544
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChH-------HHHHHHHHHHhcC-----CHHH
Q 042503 321 LYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLE-------HYGCMVDVLGRSG-----CVRE 388 (477)
Q Consensus 321 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g-----~~~~ 388 (477)
.|-+ +-|-.| .+..=+..|...=..+.-..++...... .++.. -+...+....-.| .-+.
T Consensus 330 ~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~---~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~ 401 (932)
T KOG2053|consen 330 YYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA---DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADS 401 (932)
T ss_pred HHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHHHHHHHHhhccccCChHH
Confidence 3332 222222 2223333444444445555555555421 12211 0222222222233 1222
Q ss_pred HHHHHHhc------C------CCCCH---------HHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 389 AYDLIRSM------S------IRPNA---------AIWGSLLSSCRTHGHV---ELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 389 A~~~~~~~------~------~~p~~---------~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
-..++++. | .-|+. .+.+.|+..|.+.++. -+|+.+++......|.|+..-..+++
T Consensus 402 i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLir 481 (932)
T KOG2053|consen 402 ILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIR 481 (932)
T ss_pred HHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHH
Confidence 33333333 1 12222 2345667778777764 47888899999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCcc
Q 042503 445 IYAEGGRWDDAETLRMWMRENNVKK 469 (477)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (477)
+|.-.|-...|.+.++.+--+.+..
T Consensus 482 iY~~lGa~p~a~~~y~tLdIK~IQ~ 506 (932)
T KOG2053|consen 482 IYSYLGAFPDAYELYKTLDIKNIQT 506 (932)
T ss_pred HHHHhcCChhHHHHHHhcchHHhhh
Confidence 9999999999999998886555443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-05 Score=71.72 Aligned_cols=116 Identities=20% Similarity=0.202 Sum_probs=68.3
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHH
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 421 (477)
+...|+++.|+..++.+.. ..+.|+..+....+.+.+.++.++|.+.++++ ...|+ ......+..++.+.|++++|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3345666666666666552 22444445555556666666666666666666 44555 34455556666666666666
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
+.++++....+|+++..|..|+++|...|+..+|..-.-+
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 6666666666666666666666666666555555444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.1e-05 Score=69.95 Aligned_cols=140 Identities=19% Similarity=0.129 Sum_probs=109.9
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhcC
Q 042503 306 ISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRSG 384 (477)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 384 (477)
.-.+...|++++|+..++.++..- |-|..........+...++.++|.+.++++... .|+ ....-.+..+|.+.|
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcC
Confidence 334556789999999999988763 556666777788899999999999999999843 344 566677888999999
Q ss_pred CHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 385 CVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 385 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
++.+|++.+++. ..+-|+..|..|..+|...|+..++.... +..|...|++++|...+...
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHH
Confidence 999999999988 55667789999999999999998887664 44566677777777777666
Q ss_pred HhCC
Q 042503 463 RENN 466 (477)
Q Consensus 463 ~~~~ 466 (477)
.+..
T Consensus 452 ~~~~ 455 (484)
T COG4783 452 SQQV 455 (484)
T ss_pred HHhc
Confidence 6554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-05 Score=64.28 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHH---HHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 042503 269 SVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAM---ISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA 345 (477)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 345 (477)
.++..+.-+....|+.+.|...++++...=+.++... ..-+-..|++++|+++|+.+.+.+ |.|..++..-+...-
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 3444455555556666666666665543211111111 112335688899999999998876 667777776666666
Q ss_pred ccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcC---ChHH
Q 042503 346 HAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHG---HVEL 420 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---~~~~ 420 (477)
..|+.-+|++-+....+ .+..|...|.-+...|...|++++|.-.++++ -+.| ++..+..+...+.-.| +.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 67777788888887774 35788999999999999999999999999998 3344 5566677777665544 6778
Q ss_pred HHHHHHHHHhcCCCCCchHHH
Q 042503 421 AEHAVKELINLEPWNSGNYVL 441 (477)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~ 441 (477)
+.++|.++++++|.+.+.+..
T Consensus 210 arkyy~~alkl~~~~~ral~G 230 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALFG 230 (289)
T ss_pred HHHHHHHHHHhChHhHHHHHH
Confidence 899999999999866555443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-05 Score=77.83 Aligned_cols=206 Identities=11% Similarity=0.047 Sum_probs=151.4
Q ss_pred CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHH
Q 042503 231 DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLA 310 (477)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 310 (477)
+...+..++..+...++++++.++.+...+.. |.....|-.++..+...++++.+..+ .++..+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~ 94 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFS 94 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcc
Confidence 44556777777778888888888888777666 66666666666677776665554433 3444444
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHH
Q 042503 311 FNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAY 390 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (477)
...++..+..++..|... .-+...+..+..+|.+.|+.+++..+++++.+ .. +.|+.+.|.+...|... ++++|.
T Consensus 95 ~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~-~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 95 QNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK-AD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 555565555555566553 34556888999999999999999999999995 43 67888999999999999 999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH--------------------HHHHHHHhcC
Q 042503 391 DLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYV--------------------LLSNIYAEGG 450 (477)
Q Consensus 391 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~--------------------~l~~~~~~~g 450 (477)
+++.+. +..+...+++..+.++|++++..+|++.+.+. -+-..|...+
T Consensus 170 ~m~~KA------------V~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 170 TYLKKA------------IYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred HHHHHH------------HHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence 998875 22366777888889999999888888754432 2335566778
Q ss_pred CchHHHHHHHHHHhCCCc
Q 042503 451 RWDDAETLRMWMRENNVK 468 (477)
Q Consensus 451 ~~~~A~~~~~~~~~~~~~ 468 (477)
+|+++..+++.+++...+
T Consensus 238 ~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 238 DWDEVIYILKKILEHDNK 255 (906)
T ss_pred hhhHHHHHHHHHHhcCCc
Confidence 899999999999886544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.9e-06 Score=70.16 Aligned_cols=111 Identities=19% Similarity=0.167 Sum_probs=95.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCCchHHH
Q 042503 367 VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTH---GHVELAEHAVKELINLEPWNSGNYVL 441 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (477)
+-|...|-.|...|...|++..|...|.+. .+ .+++..+..+..++..+ ....++..+++++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 678889999999999999999999999988 43 34556777777776544 35678999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCccCCCCccCC
Q 042503 442 LSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLIE 477 (477)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~~ 477 (477)
|+..+...|++.+|...|+.|.+...+.+|+.+.||
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 999999999999999999999999888888877764
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.1e-05 Score=74.38 Aligned_cols=138 Identities=9% Similarity=0.034 Sum_probs=90.8
Q ss_pred CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHH
Q 042503 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMV 377 (477)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (477)
++..+..|..+..+.|.+++|..+++...+.. |-+......+..++.+.+++++|...+++... .-+.+......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 35566666777777777777777777777653 44455566666777777777777777777763 2244455566666
Q ss_pred HHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 378 DVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
.++.+.|++++|..+|++. ...|+ ..++..+..++...|+.++|...|+++++...+-...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 7777777777777777777 23333 5667777777777777777777777777665433333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.4e-06 Score=61.61 Aligned_cols=93 Identities=14% Similarity=0.076 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN---SGNYVLLSN 444 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 444 (477)
+..++..+.+.|++++|.+.|+.+ ...|+ ...+..++.++.+.|+++.|...++++....|.+ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344445555555555555555555 22222 2344445555666666666666666666555543 334555566
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 042503 445 IYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++.+.|++++|.+.++++++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-05 Score=61.81 Aligned_cols=114 Identities=18% Similarity=0.120 Sum_probs=66.3
Q ss_pred cccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHHcCChHH
Q 042503 347 AGLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA----AIWGSLLSSCRTHGHVEL 420 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~ 420 (477)
.++...+...++.+.+..+-.+ .....-.+...+...|++++|...|+.. ...|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666664321110 0122333455666677777777777776 222333 233445666677777777
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 421 AEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
|+..++.. ...+..+..+...+.+|.+.|++++|...|++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777552 22333455666777777777777777777765
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.9e-05 Score=60.77 Aligned_cols=163 Identities=16% Similarity=0.148 Sum_probs=129.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG 381 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (477)
|..++-+....|+.+-|...++++...- +-+...-..-.--+...|++++|+++++.+.+.. +.|..++-.-+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHH
Confidence 4445556667899999999999998763 3333333222333556799999999999999533 666777777777777
Q ss_pred hcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC---CchHHH
Q 042503 382 RSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG---RWDDAE 456 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~ 456 (477)
.+|+.-+|++-+.+. .+..|...|..+...|...|+++.|.-.+++++=.+|.++..+..+++.+.-.| +..-|.
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888999888877 667899999999999999999999999999999999999999999999977555 456688
Q ss_pred HHHHHHHhCCC
Q 042503 457 TLRMWMRENNV 467 (477)
Q Consensus 457 ~~~~~~~~~~~ 467 (477)
+++.+.++.+.
T Consensus 212 kyy~~alkl~~ 222 (289)
T KOG3060|consen 212 KYYERALKLNP 222 (289)
T ss_pred HHHHHHHHhCh
Confidence 88888877654
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.9e-06 Score=58.90 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
+..+...+...|++++|...+++. ...|+ ...+..+...+...|++++|...++++.+..|.++..+..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667778888888888888887 44443 4677778888888899999999999999888888888889999999999
Q ss_pred CchHHHHHHHHHHhCC
Q 042503 451 RWDDAETLRMWMRENN 466 (477)
Q Consensus 451 ~~~~A~~~~~~~~~~~ 466 (477)
++++|...+++..+.+
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999888877643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.8e-07 Score=62.16 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=55.3
Q ss_pred cCCHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHH
Q 042503 383 SGCVREAYDLIRSM-SIRP---NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETL 458 (477)
Q Consensus 383 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (477)
.|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777777777777 2233 445566677888888888888888888 666666667777778888888888888888
Q ss_pred HHH
Q 042503 459 RMW 461 (477)
Q Consensus 459 ~~~ 461 (477)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.5e-05 Score=71.50 Aligned_cols=128 Identities=9% Similarity=0.055 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
......|+..+...++++.|+.+|+++.+.++.....++..+...++..+|++++++..... +.+...+..-...+.+.
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 34446777888888999999999999998888778888888888899999999999998764 55777777777888999
Q ss_pred ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 042503 348 GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSI 398 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 398 (477)
++++.|..+.+++.+. .|.+..+|..|..+|.+.|+++.|+-.++.++.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 9999999999999842 245567999999999999999999999998844
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.2e-05 Score=59.27 Aligned_cols=124 Identities=13% Similarity=0.078 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC--hHHHHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPN---KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN--LEHYGCM 376 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 376 (477)
|..++..+ ..++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+.. ....|+ ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHHH
Confidence 44444444 4677888888888887764 333 23334455677788888888888888884 322222 1234456
Q ss_pred HHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 377 VDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
...+...|++++|+..++.. +....+..+...+.++...|+.++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788888899988888776 32334456677788888899999998888875
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-06 Score=57.17 Aligned_cols=65 Identities=25% Similarity=0.225 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-CchHHHHHHHHHHhC
Q 042503 401 NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG-RWDDAETLRMWMREN 465 (477)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 465 (477)
+...|..++..+...|++++|+..|+++++.+|.++.++..++.+|.+.| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788899999999999999999999999999999999999999999999 799999999988764
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0017 Score=56.49 Aligned_cols=276 Identities=17% Similarity=0.175 Sum_probs=171.2
Q ss_pred cCChHHHHHHHHhcC---CCChhhHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCCHHHHH----HHHHHhhccCccc
Q 042503 179 KGDVDKGLYLFREMR---ERSVVSWNLMIS--SLGKSGRDSEALRLFHEMRDQAFELDEATVV----AVLPICARLGAVD 249 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~l~~~~~~~~~~~ 249 (477)
.|+-..|.++-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|.. |+.|-. .+.-...+.|+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHH
Confidence 344445554444332 133333333332 23346778888888887764 222222 2222334567777
Q ss_pred chHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-----CCce--eHHHHHHHHH---hcCCchHHH
Q 042503 250 IGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-----KNVV--SWNAMISGLA---FNGRGELGV 319 (477)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~---~~~~~~~a~ 319 (477)
.|.++-+..-..- |.-...+...+...+..|+++.|+++++.-.. +++. .-..|+.+-. -..+...|.
T Consensus 172 aAr~yAe~Aa~~A--p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 172 AARHYAERAAEKA--PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHhhc--cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 7777777766665 66677778888888888999998888876543 3332 1222222211 122344455
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--
Q 042503 320 ELYEQMIAKGVSPNKA-TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-- 396 (477)
Q Consensus 320 ~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 396 (477)
..-.+..+ +.|+.. .-..-..++.+.|+..++-.+++.+-+ . .|.+..+.. ..+.+.|+. ++.-+++.
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK-~--ePHP~ia~l--Y~~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK-A--EPHPDIALL--YVRARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh-c--CCChHHHHH--HHHhcCCCc--HHHHHHHHHH
Confidence 44444433 355533 333456778899999999999999883 3 455544432 234455543 33333333
Q ss_pred --CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh-cCCchHHHHHHHHHHhCCCccCCC
Q 042503 397 --SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE-GGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 397 --~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
..+||. .+...+..+....|++..|..--+.+.+..|. ...|..|+++-.. .|+-.++..++-+.+.. +.+|.
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A--PrdPa 397 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA--PRDPA 397 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC--CCCCc
Confidence 445554 67788888999999999999999999999996 7788899988765 49999999999887664 34444
Q ss_pred C
Q 042503 473 Q 473 (477)
Q Consensus 473 ~ 473 (477)
+
T Consensus 398 W 398 (531)
T COG3898 398 W 398 (531)
T ss_pred c
Confidence 3
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.9e-05 Score=68.52 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=113.8
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHH-------------H
Q 042503 307 SGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEH-------------Y 373 (477)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~ 373 (477)
.++.-.|++++|...--...+.. ..+......-..++.-.++.+.+...|++... ..|+... +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHH
Confidence 34556788888888777766654 33333333333345566788888888887763 2333221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-CCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM-SIRP-----NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
..=..-..+.|++.+|.+.+.+. ++.| +...|.....+..+.|+..+|+.-.+++++++|.-...+..-+.++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 11123345788999999999888 4444 45567677777788999999999999999999887888888888888
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCCCcc
Q 042503 448 EGGRWDDAETLRMWMRENNVKKSPGQSL 475 (477)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~~~~~~~~s~ 475 (477)
..++|++|.+.+++..+....+....+|
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s~e~r~~l 360 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKDCEIRRTL 360 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 8999999999998887764444344333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.6e-05 Score=58.21 Aligned_cols=105 Identities=14% Similarity=0.066 Sum_probs=74.1
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHH
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLL 409 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 409 (477)
++..++..+...|++++|...|..+.+...-.+ ....+..+..++.+.|++++|.+.|+++ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 445566667777888888888888774321111 1345666778888888888888888877 33333 45677778
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
.++...|+.++|...++++++..|.++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 8888889999999999999888887665443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-06 Score=54.99 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=49.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++..+...|++++|+..|+++++..|.++..+..++.++...|++++|..+++++++.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567788889999999999999888888888999999999999999999888888765
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.4e-05 Score=62.74 Aligned_cols=96 Identities=15% Similarity=0.075 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
...+..+...+...|++++|...|++. ...|+ ...+..++..+.+.|++++|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 345566666677777777777777766 22222 3467777777778888888888888888888877777777777
Q ss_pred HHHhcCC--------------chHHHHHHHHHHhC
Q 042503 445 IYAEGGR--------------WDDAETLRMWMREN 465 (477)
Q Consensus 445 ~~~~~g~--------------~~~A~~~~~~~~~~ 465 (477)
+|...|+ +++|.+++++....
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 7777666 45666666666554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.7e-06 Score=48.19 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCc
Q 042503 67 LFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDE 100 (477)
Q Consensus 67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 100 (477)
+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6888888888888888888888888888888863
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=8e-06 Score=73.52 Aligned_cols=109 Identities=17% Similarity=0.066 Sum_probs=90.0
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcC
Q 042503 339 GVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHG 416 (477)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 416 (477)
.-...+...|+++.|+..|+++.+. .+.+...|..+..+|...|++++|+..++++ ...| +...|..++.+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 3355667889999999999999843 2556778888899999999999999999998 5555 5578888999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 042503 417 HVELAEHAVKELINLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (477)
++++|+..|+++++++|.++.....+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999888777766664443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.8e-06 Score=47.70 Aligned_cols=33 Identities=24% Similarity=0.559 Sum_probs=26.8
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhCCCCC
Q 042503 66 LLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWP 98 (477)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 98 (477)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-05 Score=66.14 Aligned_cols=106 Identities=20% Similarity=0.118 Sum_probs=60.5
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHH
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a 421 (477)
+.+.+++++|+..|.++.+. .+-|...|..-..+|.+.|.++.|++-.+.. .+.|.. .+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34456666666666666531 1334444555556666666666666665555 444443 4666666666666666666
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
++.|+++++++|++......|-.+-.+.+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 666666666666666555555444444433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.3e-06 Score=46.13 Aligned_cols=33 Identities=30% Similarity=0.575 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFEL 230 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 230 (477)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.7e-05 Score=61.39 Aligned_cols=113 Identities=12% Similarity=-0.033 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHHcCChHHHHHH
Q 042503 350 VEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLLSSCRTHGHVELAEHA 424 (477)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~ 424 (477)
+..+...+..+....+..-....|..++..+...|++++|+..|++. ...|+ ..++..+...+...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33344444444322322333456677778888889999999998888 33333 34788889999999999999999
Q ss_pred HHHHHhcCCCCCchHHHHHHHHH-------hcCCchHHHHHHHHH
Q 042503 425 VKELINLEPWNSGNYVLLSNIYA-------EGGRWDDAETLRMWM 462 (477)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~ 462 (477)
++++++..|.....+..++.++. +.|++++|...+++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 99999999988888888888888 788888666555543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=5e-06 Score=46.24 Aligned_cols=34 Identities=47% Similarity=0.721 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELD 231 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 231 (477)
.+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00083 Score=51.95 Aligned_cols=132 Identities=12% Similarity=0.073 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC---HHHHH
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN---AAIWG 406 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~ 406 (477)
.|+...-..|..+....|+..+|...|++.. ..-+..|......+.++....+++..|...+++. ..+|+ +.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 5666666667777777788888888887777 3445666677777777777777888887777776 11121 22334
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.+.+.+...|.+..|+..|+.+++..|. +.....++..+.+.|+.++|..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4566777788888888888888887774 67777777778888877777665555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00023 Score=67.09 Aligned_cols=140 Identities=12% Similarity=0.046 Sum_probs=95.9
Q ss_pred CCceeHHHHHHHHHhc-----CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc--------ccHHHHHHHHHHhhhc
Q 042503 297 KNVVSWNAMISGLAFN-----GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA--------GLVEKARELFASMTGL 363 (477)
Q Consensus 297 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~ 363 (477)
.+...|...+.+.... ++...|..+|++..+.. |-....+..+..++... .+...+.+...+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 5667787777765432 23668888888888874 33444555444333221 2234444444443322
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 042503 364 HSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG 437 (477)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (477)
...+.+...|..+.......|++++|...++++ ...|+...|..++..+...|+.++|.+.++++..++|.++.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 223445567777777777789999999999888 66788888888889999999999999999999999987664
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0001 Score=66.49 Aligned_cols=102 Identities=15% Similarity=0.070 Sum_probs=83.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC
Q 042503 305 MISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG 384 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (477)
....+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++.+.. +.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 3455677899999999999999876 6678888888999999999999999999998432 456778888899999999
Q ss_pred CHHHHHHHHHhc-CCCCCHHHHHHHH
Q 042503 385 CVREAYDLIRSM-SIRPNAAIWGSLL 409 (477)
Q Consensus 385 ~~~~A~~~~~~~-~~~p~~~~~~~l~ 409 (477)
++++|+..|++. ...|+...+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999998 6667665554444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00064 Score=59.39 Aligned_cols=331 Identities=10% Similarity=-0.073 Sum_probs=170.1
Q ss_pred hhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHHHHHHHhcCChHHHH
Q 042503 110 CLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDVDKGL 186 (477)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 186 (477)
+.+..++..|+..+...++..+. +..-|..-+..+...|++++|.--.+.-.+ .........-+++...++..+|.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 44455566666666666665544 355555555556666666666544433322 11122223333444444444444
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHH-HHHhhccCcccchHHHHHHHHHhCCc
Q 042503 187 YLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAF-ELDEATVVAV-LPICARLGAVDIGQWIHSYAESSGLY 264 (477)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~ 264 (477)
+.++ +...| ....++..++....... +|.-.++..+ ..++...|+.+.|.+.-..+.+..
T Consensus 138 ~~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-- 199 (486)
T KOG0550|consen 138 EKLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-- 199 (486)
T ss_pred HHhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--
Confidence 4444 11111 11112222222221111 1322333322 234566777777777777777666
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCcee---------------HHHHHHHHHhcCCchHHHHHHHHHHHc-
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVS---------------WNAMISGLAFNGRGELGVELYEQMIAK- 328 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~~m~~~- 328 (477)
+.+......-..++.-.++.+.|...|++...-++.. |..-.+-..+.|++..|.+.|.+.+..
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 4444433333344555677788888888776533322 122223345778888888888888763
Q ss_pred --CCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH--
Q 042503 329 --GVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-- 402 (477)
Q Consensus 329 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-- 402 (477)
++.|+...|.....+..+.|+..+|+.-.++..+ +.|. +..|..-..++...+++++|.+-|++. ....+.
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence 3455666677777777888888888888887773 1111 223333344566677888888888877 222222
Q ss_pred -HHHHHHHHHHHHcCChH--HHHHHHHHHHhcCCCCCchHHHHHHHHH---hcCCchHHHHHHHHHHh
Q 042503 403 -AIWGSLLSSCRTHGHVE--LAEHAVKELINLEPWNSGNYVLLSNIYA---EGGRWDDAETLRMWMRE 464 (477)
Q Consensus 403 -~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 464 (477)
.++.....++-+.++-+ ..+-+-+.+ .......+|..++-++. ..|.-.+|...|++.-+
T Consensus 357 r~~l~~A~~aLkkSkRkd~ykilGi~~~a--s~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevge 422 (486)
T KOG0550|consen 357 RRTLREAQLALKKSKRKDWYKILGISRNA--SDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGE 422 (486)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHhhhhhhc--ccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHH
Confidence 33333333333322211 111111111 11112445655555543 34555777777776643
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.03 E-value=9.5e-05 Score=52.45 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=56.4
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHc
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTH 415 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 415 (477)
..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 34445555566666666666666532 1233345555666666666777777666665 2222 334666666677777
Q ss_pred CChHHHHHHHHHHHhcCC
Q 042503 416 GHVELAEHAVKELINLEP 433 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p 433 (477)
|+++.|...++++.+..|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 777777777777766655
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.7e-05 Score=54.71 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=35.3
Q ss_pred CCchHHHHHHHHHHHcCCC-CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 042503 313 GRGELGVELYEQMIAKGVS-PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 391 (477)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++... .. +.+......+..++.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~-~~--~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK-LD--PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT-HH--HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC-CC--CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4555555555555554311 123333334555555555555555555411 11 1122233333455555555555555
Q ss_pred HHHh
Q 042503 392 LIRS 395 (477)
Q Consensus 392 ~~~~ 395 (477)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.3e-05 Score=50.97 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=48.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 376 MVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
+...+.+.|++++|.+.|++. ...| +...+..+..++...|++++|...|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 5556 457888888899999999999999999999998764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0014 Score=55.39 Aligned_cols=58 Identities=14% Similarity=0.123 Sum_probs=48.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEPWN---SGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.+...|.+.|.+..|..-++.+++.-|.. +++...++.+|.+.|..++|.++...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 35567889999999999999999988765 45677888999999999999988876643
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00025 Score=66.89 Aligned_cols=144 Identities=17% Similarity=0.092 Sum_probs=103.4
Q ss_pred cCCCCCHHHHHHHHHHhhc-----cccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhc--------CCHHHHHHHH
Q 042503 328 KGVSPNKATFVGVLTCCAH-----AGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRS--------GCVREAYDLI 393 (477)
Q Consensus 328 ~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~ 393 (477)
.+.+.|...|...+++... .++...|..+|+++.+. .|+ ...|..+..++... ++...+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 3446778888888877543 23478999999999853 344 44555544444322 1234455555
Q ss_pred Hhc----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 042503 394 RSM----SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKK 469 (477)
Q Consensus 394 ~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (477)
++. ....++..+..+.......|++++|...++++++++| +...|..++.++...|+.++|...+++....+ +.
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~-P~ 485 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR-PG 485 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 553 2344567788887777788999999999999999999 58899999999999999999999999998765 33
Q ss_pred CCCCccC
Q 042503 470 SPGQSLI 476 (477)
Q Consensus 470 ~~~~s~~ 476 (477)
.|..-|.
T Consensus 486 ~pt~~~~ 492 (517)
T PRK10153 486 ENTLYWI 492 (517)
T ss_pred CchHHHH
Confidence 3444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.4e-05 Score=52.38 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=51.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 042503 409 LSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (477)
...|.+.++++.|.+++++++..+|.++..+...+.++.+.|++++|.+.+++.++.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678889999999999999999999999999999999999999999999999887653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.5e-06 Score=53.70 Aligned_cols=54 Identities=22% Similarity=0.362 Sum_probs=40.9
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...|++++|++.++++++.+|.++..+..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456778888888888888888888888888888888888888887777766543
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00028 Score=61.36 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=91.8
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHH-hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTC-CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV 379 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (477)
+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 46677777777777888888888887543 3334444444443 23356777788888888754 45677778888888
Q ss_pred HHhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 380 LGRSGCVREAYDLIRSM-SIRPNA----AIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
+.+.|+.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+..+.+++.+..|.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 88888888888888888 333333 488888888888888888888888888877653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00032 Score=56.22 Aligned_cols=129 Identities=19% Similarity=0.148 Sum_probs=68.6
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHH
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN--KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMV 377 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (477)
..+..+...+...|++++|...+++..+....+. ...+..+..++.+.|++++|...+++..+. .+.+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3455555556666666666666666655432221 244555555666666666666666665531 122344444455
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 378 DVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
.++...|+...+..-++.. ...+++|.++++++++.+|++ +..++.-+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5555555544433222211 112577888888888888865 4445554444443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.011 Score=52.65 Aligned_cols=440 Identities=12% Similarity=0.078 Sum_probs=222.4
Q ss_pred hhcCCCchhHhHHHHHHHHhhcccch------hHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchHHHHHHHH--Hhc
Q 042503 9 LHGRNTRTHLTQIHAHFLRHKLHQSN------LILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNSMIKAY--SLN 78 (477)
Q Consensus 9 ~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~--~~~ 78 (477)
+.++++++++..+|..+.+..- .++ ...+.++++|.- ++.+.....+....+ | ...|-.+..++ .+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence 3578999999999999987752 222 234456676654 566666666555544 3 44566666554 578
Q ss_pred CCCchHHHHHHHHHhC--CCCCC------------cccHHHHHHHhhccCCchhHHHHHHHHHHhccc----CcchHHHH
Q 042503 79 GPSEEPVKLFALLKNL--GIWPD------------EYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFE----RFGSIRIG 140 (477)
Q Consensus 79 ~~~~~a~~~~~~~~~~--~~~p~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ 140 (477)
+++.+|.+.+...... +-.|. ..-=+..+..++..|++.+++.+++.+...=++ -+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8999999998877664 22221 111123456677888888888888888765444 56777777
Q ss_pred HHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhc--CChhHHHH
Q 042503 141 VVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKS--GRDSEALR 218 (477)
Q Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~ 218 (477)
++-.+.+.=-. ++-+.+...=...|..++-.|.+.=..-++.. +++. -|.......++....-. .+..--.+
T Consensus 173 ~vlmlsrSYfL----El~e~~s~dl~pdyYemilfY~kki~~~d~~~-Y~k~-~peeeL~s~imqhlfi~p~e~l~~~mq 246 (549)
T PF07079_consen 173 AVLMLSRSYFL----ELKESMSSDLYPDYYEMILFYLKKIHAFDQRP-YEKF-IPEEELFSTIMQHLFIVPKERLPPLMQ 246 (549)
T ss_pred HHHHHhHHHHH----HHHHhcccccChHHHHHHHHHHHHHHHHhhch-HHhh-CcHHHHHHHHHHHHHhCCHhhccHHHH
Confidence 65555433111 11111111111123344444433211111100 0000 01111112222211111 11222233
Q ss_pred HHHHHHHcCCCCCHHHHH-HHHHHhhccCcccchHHHHHHHHHhCCc---cchhHHHHHHHHHHHhcCChHHHHHHhccC
Q 042503 219 LFHEMRDQAFELDEATVV-AVLPICARLGAVDIGQWIHSYAESSGLY---RKVVSVGNALVDFYCKCGILDTARNVFKEI 294 (477)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (477)
+++.....-+.|+..... .+...+.. +.+.+..+.+.+....+. ..-...+..++....+.++...|...+.-+
T Consensus 247 ~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL 324 (549)
T PF07079_consen 247 ILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALL 324 (549)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333444455533322 22222222 333333333333222210 223344556666667777777776665543
Q ss_pred C--CCCcee-------HHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCCHHHHHHHH---HHhhcccc-HHHHHHHH
Q 042503 295 P--RKNVVS-------WNAMISGLAF----NGRGELGVELYEQMIAKGVSPNKATFVGVL---TCCAHAGL-VEKARELF 357 (477)
Q Consensus 295 ~--~~~~~~-------~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~---~~~~~~~~-~~~a~~~~ 357 (477)
. +|+... -..+-+..+. .-+..+-+.+|+......+.. ......++ .-+.+.|. -++|+.++
T Consensus 325 ~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 325 KILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred HhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 3 232221 1111122221 112233344555555543221 11112222 23444554 77888888
Q ss_pred HHhhhccCCCCChHHHHHHH----HHHHhc---CCHHHH---HHHHHhcCCCCC----HHHHHHHHHH--HHHcCChHHH
Q 042503 358 ASMTGLHSIVPNLEHYGCMV----DVLGRS---GCVREA---YDLIRSMSIRPN----AAIWGSLLSS--CRTHGHVELA 421 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~~A---~~~~~~~~~~p~----~~~~~~l~~~--~~~~~~~~~a 421 (477)
+.+.+ . -+-|..+-|... ..|.+. ..+.+- ....++.|+.|- ...-|.+..+ +..+|++.++
T Consensus 404 k~il~-f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc 481 (549)
T PF07079_consen 404 KLILQ-F-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKC 481 (549)
T ss_pred HHHHH-h-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHH
Confidence 88874 2 123333333222 222221 222222 233344466553 3455555544 5678999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
.-.-.-+.+..| ++.+|..++-++....++++|..++..+.
T Consensus 482 ~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 482 YLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 888888888889 79999999999999999999999997663
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.017 Score=54.39 Aligned_cols=248 Identities=13% Similarity=0.043 Sum_probs=133.5
Q ss_pred ChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhC-CCCCCcc--cHHH--H--HHHhhccCCchhHHH
Q 042503 49 EIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNL-GIWPDEY--TFAP--L--LKACLGVGDLRVGQC 121 (477)
Q Consensus 49 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~--~~~~--l--~~~~~~~~~~~~a~~ 121 (477)
.+++|.+..+. .|.+..|..+...-...-.++.|...|-+.... |++.-.. +..+ + ...-+--|++++|++
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 35666666553 256677887777777666777777766655542 2211000 0000 0 011122367777777
Q ss_pred HHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC-----CchHHhHHHHHHHHhcCChHHHHHHHHhcCCCC
Q 042503 122 VHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-----RDVIVRNLMIHGFCKKGDVDKGLYLFREMRERS 196 (477)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 196 (477)
++-++-+.+ ..+..+.+.|++-.+.++++.-.. .-...|+.+...+.....+++|.+.|......
T Consensus 756 ~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~- 825 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT- 825 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-
Confidence 776554433 235556667777777766665332 11245677777777777777777777654321
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHH
Q 042503 197 VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVD 276 (477)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (477)
...+.++.+..++++-..+-.. ++-+....-.+...+.+.|.-++|.+.+-+ .+. | .+-+.
T Consensus 826 ----e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~--p-----kaAv~ 886 (1189)
T KOG2041|consen 826 ----ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSL--P-----KAAVH 886 (1189)
T ss_pred ----HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccC--c-----HHHHH
Confidence 1234444444444444333332 244555555666677777766666555432 121 1 34455
Q ss_pred HHHhcCChHHHHHHhccCCCCCceeHHH--------------HHHHHHhcCCchHHHHHHHHHHH
Q 042503 277 FYCKCGILDTARNVFKEIPRKNVVSWNA--------------MISGLAFNGRGELGVELYEQMIA 327 (477)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------------l~~~~~~~~~~~~a~~~~~~m~~ 327 (477)
.+...+++.+|.++-++..-|.+.+.-+ -|..+.+.|++-.|.+++.+|.+
T Consensus 887 tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 887 TCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 6667777777777766655444332211 12334455666666667666654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00017 Score=55.14 Aligned_cols=88 Identities=13% Similarity=-0.032 Sum_probs=72.2
Q ss_pred HHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 042503 377 VDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDD 454 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (477)
..-+...|++++|..+|+-+ -..-+..-|..|..++...+++++|+..|..+..++++||..+...+..|...|+.+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 33455788899998888887 2234556677888888888999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHh
Q 042503 455 AETLRMWMRE 464 (477)
Q Consensus 455 A~~~~~~~~~ 464 (477)
|...|+..++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9998888776
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.023 Score=55.10 Aligned_cols=212 Identities=13% Similarity=0.113 Sum_probs=134.5
Q ss_pred hcCCCchhHhHHHHHHHHhhcccchhHHHhHHHH--HhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchH
Q 042503 10 HGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSV--CGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEP 84 (477)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 84 (477)
..++++..|..-...+.+.. |+. .+...+.+ +.+.|+.++|..+++.... .|..+...+-..|-..++.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 35678888888888888775 332 33333443 4578999999988887654 4666788888888889999999
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcC----------ChhhH
Q 042503 85 VKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCG----------QMDDG 154 (477)
Q Consensus 85 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A 154 (477)
..+|+..... -|+..-...+..++++.+++.+-.++-=++.+. ++-+...+=+++..+...- -..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999988874 477777777888888888877655554444443 2324444444454444321 12345
Q ss_pred HHHhcccCCCc--hH---HhHHHHHHHHhcCChHHHHHHHHhc-----CCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042503 155 MKVFDEMSHRD--VI---VRNLMIHGFCKKGDVDKGLYLFREM-----RERSVVSWNLMISSLGKSGRDSEALRLFHEMR 224 (477)
Q Consensus 155 ~~~~~~~~~~~--~~---~~~~l~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 224 (477)
.+.++.+.+.+ .. -.......+...|++++|.+++..- ...+...-+.-+..+...++|.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 56666555422 11 1112233445678888888888332 22333344455666777788888888777777
Q ss_pred HcC
Q 042503 225 DQA 227 (477)
Q Consensus 225 ~~~ 227 (477)
..|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 765
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.5e-05 Score=63.11 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=79.3
Q ss_pred HHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 042503 378 DVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDA 455 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (477)
.-+.+.+++++|+..|.+. .+.|+ ...|..-..+|.+.|.++.|.+-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456788999999999998 66664 566777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 042503 456 ETLRMWMRENN 466 (477)
Q Consensus 456 ~~~~~~~~~~~ 466 (477)
++.|++.++..
T Consensus 169 ~~aykKaLeld 179 (304)
T KOG0553|consen 169 IEAYKKALELD 179 (304)
T ss_pred HHHHHhhhccC
Confidence 99998887653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00031 Score=61.07 Aligned_cols=129 Identities=10% Similarity=0.068 Sum_probs=101.0
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHhc--CCCCCHHHHHHHHHH
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR-SGCVREAYDLIRSM--SIRPNAAIWGSLLSS 411 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 411 (477)
.+|..++...-+.+..+.|..+|.++.+.. ..+..+|......-.. .++.+.|.++|+.. ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~--~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK--RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 467888888899999999999999998433 2344555555555334 56777799999998 556677889999999
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 412 CRTHGHVELAEHAVKELINLEPWNS---GNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+...|+.+.|..+|++++..-|.+. ..|..++..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766544 58999999999999999999999988764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.015 Score=51.32 Aligned_cols=107 Identities=13% Similarity=0.201 Sum_probs=84.1
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTH 415 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 415 (477)
+.+..+.-+...|+...|.++-.+.. -|+..-|...+.+++..++|++-.++... +-++..|...+.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 44555666777888888888776665 58888999999999999999988876553 33457788899999999
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 042503 416 GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
|+..+|..+..++ .+..-+..|.+.|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHH
Confidence 9999999888771 1256778889999999987763
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.018 Score=50.72 Aligned_cols=107 Identities=16% Similarity=0.111 Sum_probs=67.7
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHH
Q 042503 273 ALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEK 352 (477)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 352 (477)
..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++...+.+. .. ++..|..++.+|.+.|+..+
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---sPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS---KK---SPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---CCCChHHHHHHHHHCCCHHH
Confidence 3344555666777777777777667777777777777777777766554322 11 23556667777777777777
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
|..+..++. +..-+..|.+.|++.+|.+.--+.
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 777666532 123456677777777776665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.021 Score=51.01 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHH-HHHHHH
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHS-IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIW-GSLLSS 411 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~ 411 (477)
..|...+....+...++.|..+|-+..+ .+ ..+++..+++++..++ .|+..-|.++|+-. ..-||...| ...+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3455666666677778888888888884 44 5677777888777554 56777888888765 334555443 556666
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 412 CRTHGHVELAEHAVKELINLEPWN--SGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+...++-+.|..+|+..+..-..+ ..+|..++..-..-|+...+..+-+++.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 777888888888888665433222 56788888888888888777777666654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00062 Score=54.33 Aligned_cols=101 Identities=15% Similarity=0.052 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHH
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLS 410 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~ 410 (477)
...+..+...+...|++++|+..|++......-++ ...++..+...|...|++++|+..+++. ...|+ ...+..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34455556666667777777777777753221111 1246666777777777777777777776 33333 344555555
Q ss_pred HHH-------HcCChH-------HHHHHHHHHHhcCCC
Q 042503 411 SCR-------THGHVE-------LAEHAVKELINLEPW 434 (477)
Q Consensus 411 ~~~-------~~~~~~-------~a~~~~~~~~~~~p~ 434 (477)
.+. ..|+++ +|..++++++..+|.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 555 666766 445555556666664
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.5e-05 Score=50.71 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 383 SGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 383 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
.|++++|++.|+++ ...| +...+..++.+|.+.|++++|.++++++....|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 34444444444444 1122 33444444444445555555555555544444443
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00022 Score=60.77 Aligned_cols=90 Identities=12% Similarity=0.003 Sum_probs=38.8
Q ss_pred hccccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHHcCCh
Q 042503 345 AHAGLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLLSSCRTHGHV 418 (477)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~ 418 (477)
.+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+.+ ...|+ ...+..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555543221100 0123334444455555555555555444 11121 23333344444445555
Q ss_pred HHHHHHHHHHHhcCCC
Q 042503 419 ELAEHAVKELINLEPW 434 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~ 434 (477)
+.|..+|+++++..|.
T Consensus 234 ~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 234 AKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHHHCcC
Confidence 5555555555555444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.2e-05 Score=49.08 Aligned_cols=65 Identities=22% Similarity=0.269 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHG-HVELAEHAVKELINLEP 433 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 433 (477)
+...|..+...+...|++++|+..|++. ...|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567778888888888888888888887 44454 468888888888888 79999999999988887
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0019 Score=56.38 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVS-----PNKA-TFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
+..+...+.+.|++++|..+|++....-.. .+.. .|...+-++...||+..|...+++..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334455556666666666666665543211 1111 12223334455566666666666654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=2.3e-05 Score=42.03 Aligned_cols=29 Identities=31% Similarity=0.591 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhCC
Q 042503 67 LFNSMIKAYSLNGPSEEPVKLFALLKNLG 95 (477)
Q Consensus 67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 95 (477)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.038 Score=52.59 Aligned_cols=352 Identities=13% Similarity=0.087 Sum_probs=181.7
Q ss_pred HHHHhcCCCchHHHHHHHHH--------hCCCCCCcccHHH-----HHHHhhccCCchhHHHHHHHHHHhcccCcchHHH
Q 042503 73 KAYSLNGPSEEPVKLFALLK--------NLGIWPDEYTFAP-----LLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRI 139 (477)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~--------~~~~~p~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 139 (477)
.++.+..++++-..+.+.+. .-|++.+..-|.. ++.-+...+.+..|.++-..+...-.. ...+|.
T Consensus 397 k~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~ 475 (829)
T KOG2280|consen 397 KASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLL 475 (829)
T ss_pred ccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHH
Confidence 34445556666555555443 2356666555554 345556667777777776655321111 145566
Q ss_pred HHHHHHHhcC---ChhhHHHHhcccCC--CchHHhHHHHHHHHhcCChHHHHHHHHhcCCC--------ChhhHHHHHHH
Q 042503 140 GVVELYTSCG---QMDDGMKVFDEMSH--RDVIVRNLMIHGFCKKGDVDKGLYLFREMRER--------SVVSWNLMISS 206 (477)
Q Consensus 140 ~l~~~~~~~g---~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~l~~~ 206 (477)
....-+.+.. +-+-+..+-+++.. .+...|..+.+-....|+.+-|..+++.=+.. +..-+..-+.-
T Consensus 476 ~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~k 555 (829)
T KOG2280|consen 476 EWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKK 555 (829)
T ss_pred HHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHH
Confidence 6666555552 22223333333333 34455666666667777777777777654431 22234444455
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHH
Q 042503 207 LGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDT 286 (477)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (477)
....|+.+-...++-++...- +...|...+ .+.-.|..++.+..+..- . ..+-..|- .++-..
T Consensus 556 aies~d~~Li~~Vllhlk~~~---~~s~l~~~l------~~~p~a~~lY~~~~r~~~-~------~~l~d~y~-q~dn~~ 618 (829)
T KOG2280|consen 556 AIESGDTDLIIQVLLHLKNKL---NRSSLFMTL------RNQPLALSLYRQFMRHQD-R------ATLYDFYN-QDDNHQ 618 (829)
T ss_pred HHhcCCchhHHHHHHHHHHHH---HHHHHHHHH------HhchhhhHHHHHHHHhhc-h------hhhhhhhh-cccchh
Confidence 555666666665555554321 111111111 112222333333322111 0 01111121 222222
Q ss_pred HHHHhc--cCC-----CCCceeHHHHHHHHHhcCCch----------HHHHHHHHHHH-cCCCCCHHHHHHHHHHhhccc
Q 042503 287 ARNVFK--EIP-----RKNVVSWNAMISGLAFNGRGE----------LGVELYEQMIA-KGVSPNKATFVGVLTCCAHAG 348 (477)
Q Consensus 287 a~~~~~--~~~-----~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~ 348 (477)
+...|. ... .+-.........++.+..... +-+.+.+.+.. .|......+.+--+.-+...|
T Consensus 619 ~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g 698 (829)
T KOG2280|consen 619 ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIG 698 (829)
T ss_pred hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHcc
Confidence 221111 100 111122233334444433211 11122222222 222333334455555666778
Q ss_pred cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 349 LVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+... .+.-|.....+|.+.|+.++|..+.-+.
T Consensus 699 ~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 699 QNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred chHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 8888888877776 5888888888888999999988888777663 2455666888899999999888876553
Q ss_pred HhcCCCCCchHHHHHHHHHhcCCchHHHHH
Q 042503 429 INLEPWNSGNYVLLSNIYAEGGRWDDAETL 458 (477)
Q Consensus 429 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (477)
-.+ .....+|.+.|++.+|.++
T Consensus 771 ~~l--------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 771 GGL--------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred CCh--------HHHHHHHHHhccHHHHHHH
Confidence 211 1577888888888888765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00023 Score=64.26 Aligned_cols=118 Identities=18% Similarity=0.240 Sum_probs=71.1
Q ss_pred ccchhHHHhHHHHHhhcCChhHHHHHhccCCC-C-----CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHH
Q 042503 31 HQSNLILAHFVSVCGTLNEIKYATKIFNQMRN-P-----SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFA 104 (477)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 104 (477)
+.+......+++.+....+++.+..++-+.+. | -..+..++++.|...|..+.++++++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 34445555556666666666666666555443 1 12234566667777777777777766666667777777777
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhc
Q 042503 105 PLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSC 148 (477)
Q Consensus 105 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (477)
.|+..+.+.|++..|.++..+|...+...+..++..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777766666666655555555555444444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00087 Score=49.18 Aligned_cols=86 Identities=21% Similarity=0.087 Sum_probs=48.6
Q ss_pred HHHHHhcCCHHHHHHHHHhc---CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 042503 377 VDVLGRSGCVREAYDLIRSM---SIRPN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEPW---NSGNYVLLSNIYAE 448 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 448 (477)
..++-..|+.++|+.+|++. +.... ...+..+...+...|++++|..++++.....|+ +......++.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455556666666666555 22222 234455556666666666666666666665555 44455555566666
Q ss_pred cCCchHHHHHHHHH
Q 042503 449 GGRWDDAETLRMWM 462 (477)
Q Consensus 449 ~g~~~~A~~~~~~~ 462 (477)
.|+.++|+..+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 66666666665443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00053 Score=52.21 Aligned_cols=90 Identities=13% Similarity=0.005 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHh
Q 042503 201 NLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK 280 (477)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (477)
-.+...+...|++++|..+|+.+.... +-+..-|..+.-++...|++++|...+..+.... +.++..+..+..++..
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHH
Confidence 334444555556666666655554432 2223333344444444555555555555555554 4555555555555555
Q ss_pred cCChHHHHHHhcc
Q 042503 281 CGILDTARNVFKE 293 (477)
Q Consensus 281 ~~~~~~a~~~~~~ 293 (477)
.|+.+.|++.|+.
T Consensus 116 lG~~~~A~~aF~~ 128 (157)
T PRK15363 116 CDNVCYAIKALKA 128 (157)
T ss_pred cCCHHHHHHHHHH
Confidence 5555555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.8e-05 Score=40.76 Aligned_cols=31 Identities=42% Similarity=0.663 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAF 228 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 228 (477)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0079 Score=50.97 Aligned_cols=77 Identities=14% Similarity=0.046 Sum_probs=49.0
Q ss_pred CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccH----HHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHH
Q 042503 64 SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTF----APLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRI 139 (477)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 139 (477)
++..+-.....+.+.|++++|.+.|+.+... .|+.... -.+..++.+.++++.|...++..++..+.-...-+.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 4444444555667788888888888888874 3433221 345566778888888888888888865543333333
Q ss_pred HHH
Q 042503 140 GVV 142 (477)
Q Consensus 140 ~l~ 142 (477)
..+
T Consensus 109 ~Y~ 111 (243)
T PRK10866 109 LYM 111 (243)
T ss_pred HHH
Confidence 333
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0043 Score=48.17 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=101.6
Q ss_pred CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHH
Q 042503 297 KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCM 376 (477)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 376 (477)
|.+..--.+..++...|+..+|...|.+...--..-|......+.++....+++..|...++.+.+...-.-++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 55556667888889999999999999998876566788888888888889999999999999887533222234455667
Q ss_pred HHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 377 VDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
.+.|...|+.++|..-|+.. ..-|+...-......+.++|+..++..-+..+.+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88899999999999999888 6677776655566667788877766655554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0038 Score=54.54 Aligned_cols=204 Identities=13% Similarity=0.151 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhCCCCCC-----cccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHH
Q 042503 70 SMIKAYSLNGPSEEPVKLFALLKNLGIWPD-----EYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVEL 144 (477)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (477)
.....|-..|++++|.+.|.+..+.-...+ ...|......+ +..++++|...++.. +..
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A---------------~~~ 103 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKA---------------IEI 103 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHH---------------HHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHH---------------HHH
Confidence 445566677777777777766643211000 11122222222 222555555554443 344
Q ss_pred HHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhc-CChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCChh
Q 042503 145 YTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKK-GDVDKGLYLFREMRE-----RS----VVSWNLMISSLGKSGRDS 214 (477)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~ 214 (477)
|...|++..|-+.+. .+...|... |++++|++.|++..+ .. ...+..++..+.+.|+++
T Consensus 104 y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 104 YREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 556666655544333 344455555 666777666666543 11 224566777788888888
Q ss_pred HHHHHHHHHHHcCCC-----CCHH-HHHHHHHHhhccCcccchHHHHHHHHHhCC---ccchhHHHHHHHHHHHhc--CC
Q 042503 215 EALRLFHEMRDQAFE-----LDEA-TVVAVLPICARLGAVDIGQWIHSYAESSGL---YRKVVSVGNALVDFYCKC--GI 283 (477)
Q Consensus 215 ~a~~~~~~m~~~~~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~--~~ 283 (477)
+|..+|++....... ++.. .|...+-++...||...|...++....... ......+...|+.++-.. ..
T Consensus 173 ~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~ 252 (282)
T PF14938_consen 173 EAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEA 252 (282)
T ss_dssp HHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHH
Confidence 888888887654322 1221 222333345556777777777776664431 012233334455555432 34
Q ss_pred hHHHHHHhccCCCCCce
Q 042503 284 LDTARNVFKEIPRKNVV 300 (477)
Q Consensus 284 ~~~a~~~~~~~~~~~~~ 300 (477)
+..+..-|+.+.+-|..
T Consensus 253 f~~av~~~d~~~~ld~w 269 (282)
T PF14938_consen 253 FTEAVAEYDSISRLDNW 269 (282)
T ss_dssp HHHHCHHHTTSS---HH
T ss_pred HHHHHHHHcccCccHHH
Confidence 55566666666555543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00042 Score=53.83 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH-----hCCCccCCC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR-----ENNVKKSPG 472 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 472 (477)
.....++..+...|++++|...+++++..+|.+...|..++.+|.+.|+..+|.+.++++. +.|++|+|.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3556677788899999999999999999999999999999999999999999999998874 358777764
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00029 Score=49.58 Aligned_cols=79 Identities=18% Similarity=0.069 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHhCCC-CCCcccHHHHHHHhhccC--------CchhHHHHHHHHHHhcccCcchHHH
Q 042503 69 NSMIKAYSLNGPSEEPVKLFALLKNLGI-WPDEYTFAPLLKACLGVG--------DLRVGQCVHGEIIRSGFERFGSIRI 139 (477)
Q Consensus 69 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 139 (477)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ..-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456667777999999999999999998 899999999998876543 2335678889999999999999999
Q ss_pred HHHHHHHh
Q 042503 140 GVVELYTS 147 (477)
Q Consensus 140 ~l~~~~~~ 147 (477)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 98887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.5e-05 Score=42.02 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=30.9
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHhcCCchHHH
Q 042503 424 AVKELINLEPWNSGNYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (477)
.|+++++++|+++.+|..++.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999999986
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0012 Score=48.47 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=54.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccc---hhHHHHHHHHH
Q 042503 203 MISSLGKSGRDSEALRLFHEMRDQAFELD--EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRK---VVSVGNALVDF 277 (477)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~ 277 (477)
+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++...... |. +..+...+..+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 45566677888888888888777765544 2234445556666677777777776666553 22 33333334445
Q ss_pred HHhcCChHHHHHHhccCCC
Q 042503 278 YCKCGILDTARNVFKEIPR 296 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~ 296 (477)
+...|+.++|.+.+-....
T Consensus 85 L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5556666666655544333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00012 Score=43.03 Aligned_cols=42 Identities=24% Similarity=0.423 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
.++..+..+|...|++++|+++|+++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467788999999999999999999999999999999888764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00055 Score=59.75 Aligned_cols=129 Identities=11% Similarity=-0.075 Sum_probs=87.4
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhh---hccCCC-CChHHHHHHHHHHHhcCCHHHHHHHHHhc-------CC-CCCHH
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMT---GLHSIV-PNLEHYGCMVDVLGRSGCVREAYDLIRSM-------SI-RPNAA 403 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 403 (477)
.|..|...|.-.|+++.|+...+.-. +.+|-. .....+..|..++.-.|+++.|.+.|+.. +. .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45566666677788888876654321 123322 22346677888888888888888888765 21 22334
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc----C--CCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINL----E--PWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+..+|...|.-..++++|+.+..+-+.+ + ....+++.+|+.++...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5667778888888888888887776533 2 23466888889999999999998888776544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.028 Score=52.97 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=32.5
Q ss_pred cCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCCh
Q 042503 132 ERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSV 197 (477)
Q Consensus 132 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 197 (477)
+.+....-.+.+++.+.|.-++|.+.+-+...|.. -+..|...+++.+|.++-++..-|.+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVELAQRFQLPQV 909 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHHHHhccchhH
Confidence 33455555566666666666666665555444432 23344555556666655555444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0035 Score=56.92 Aligned_cols=121 Identities=11% Similarity=0.039 Sum_probs=79.9
Q ss_pred CCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCCCHHH
Q 042503 329 GVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHS-IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM---SIRPNAAI 404 (477)
Q Consensus 329 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~ 404 (477)
+.+.+......+++.+....+.+.+..++.+.+.... ...-..+..++++.|.+.|..++++++++.= |+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4456666777777777777777777777777764211 1122334557777788888888887777664 77778888
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCCchHHHHHHHHHhc
Q 042503 405 WGSLLSSCRTHGHVELAEHAVKELINLE-PWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 405 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 449 (477)
++.++..+.+.|++..|.++...+...+ ..++.++..-+.++.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888777777665433 44455555544444444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0019 Score=52.92 Aligned_cols=136 Identities=13% Similarity=0.057 Sum_probs=99.4
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccC----CCCChHHHHH
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHS----IVPNLEHYGC 375 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~ 375 (477)
..-+.++..+.-.|.+.-.+..+++.++...+.++.....+++.-.+.||.+.|...|+...+..+ ..-...+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345566777777888888899999999887677788888899999999999999999997764322 2222223333
Q ss_pred HHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 376 MVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
....|.-++++.+|.+.+.++ ..+.|+...|.-.-+..-.|+...|++.++.++...|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 444566778889999999888 223345555555556667889999999999999888863
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0026 Score=54.35 Aligned_cols=95 Identities=11% Similarity=0.072 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHH
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA----AIWGSLLSSCRTHGHVELAEHAVKELINLEPWN---SGNYVLLS 443 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 443 (477)
.|......+.+.|++++|+..|+.+ ...|+. ..+..++.+|...|++++|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445668888888888887 444443 466677788888888888888888888777664 44556667
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 042503 444 NIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.++...|++++|..+++++++.-
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77888888888888888887653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.011 Score=55.01 Aligned_cols=253 Identities=12% Similarity=0.109 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhH
Q 042503 136 SIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSE 215 (477)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (477)
..+.+=+-.|...|.+++|.++---- .....|..|.......=+++-|.+.|.+... -.+-+
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclg--Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRd----------------l~~L~ 618 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLG--VTDTDWRELAMEALEALDFETARKAYIRVRD----------------LRYLE 618 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccc--eecchHHHHHHHHHhhhhhHHHHHHHHHHhc----------------cHHHH
Confidence 33444445566777777776542211 1122344444433333344444444333221 12334
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC
Q 042503 216 ALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP 295 (477)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (477)
.+.-++++++.|-.|+.... ...|+-.|.+.+|.++|.+--.. +.-+++|.....++.|.+++....
T Consensus 619 li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~e----------nRAlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 619 LISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHE----------NRALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred HHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCch----------hhHHHHHHHHHHHHHHHHHhhcCC
Confidence 45556777777777776433 44556677777777776543211 234555555555666665554432
Q ss_pred C--------------CCceeHHHHHHHHHhcCCchHHHHHHHH------HHHcCC---CCCHHHHHHHHHHhhccccHHH
Q 042503 296 R--------------KNVVSWNAMISGLAFNGRGELGVELYEQ------MIAKGV---SPNKATFVGVLTCCAHAGLVEK 352 (477)
Q Consensus 296 ~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 352 (477)
. .++.--.+....+...|+.++|..+.-+ +.+.+- ..+..+...+...+-+...+..
T Consensus 686 ~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred hHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccch
Confidence 1 1111112333445556666666554321 122111 2234455555555556667777
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHH-----------HHHHHHHHHHcCChHH
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAI-----------WGSLLSSCRTHGHVEL 420 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-----------~~~l~~~~~~~~~~~~ 420 (477)
|-++|.+|-. ...+++.....+++++|.++-++. ...||... |...-.+|.+.|+..+
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~E 835 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQRE 835 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHH
Confidence 8888877752 123677788889999999988887 44554321 2222334555556666
Q ss_pred HHHHHHHHH
Q 042503 421 AEHAVKELI 429 (477)
Q Consensus 421 a~~~~~~~~ 429 (477)
|.++++++-
T Consensus 836 A~~vLeQLt 844 (1081)
T KOG1538|consen 836 AVQVLEQLT 844 (1081)
T ss_pred HHHHHHHhh
Confidence 666655553
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0095 Score=50.45 Aligned_cols=112 Identities=17% Similarity=0.126 Sum_probs=87.0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhc---CCHHHHHHHHHhc-C
Q 042503 322 YEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRS---GCVREAYDLIRSM-S 397 (477)
Q Consensus 322 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~ 397 (477)
++.-...+ +-|...|..|..+|...|+...|...|.+..+.. ++++..+..+..++..+ ....++..+|+++ .
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 33333444 7788999999999999999999999999998544 45666676676665533 2567889999998 4
Q ss_pred CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 398 IRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 398 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
.+| |......+...+...|++.+|...|+.+++..|.+.
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 455 556777788889999999999999999999998654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0014 Score=57.35 Aligned_cols=130 Identities=11% Similarity=0.002 Sum_probs=78.7
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHH----HHcCCC-CCHHHHHHHHHHhhccccHHHHHHHHHHhh----hccCCCCChH
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQM----IAKGVS-PNKATFVGVLTCCAHAGLVEKARELFASMT----GLHSIVPNLE 371 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~ 371 (477)
.|..+...|.-.|+++.|+..-+.= .+.|-+ .....+..+..++.-.|+++.|.+.|+... +...-.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4555555555667777776554332 122211 123356667777777788888877776543 1111123344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM--------SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
+..+|...|.-...+++|+.++++- ...-....+.+|..++...|..++|..+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5566777777777788887776654 1122345677788888888888888877776654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00062 Score=61.07 Aligned_cols=101 Identities=13% Similarity=0.043 Sum_probs=74.1
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 042503 367 VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAA----IWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVL 441 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (477)
+.+...++.+..+|.+.|++++|+..|++. .+.|+.. +|..+..+|...|+.++|+..++++++..+. .|..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~ 148 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFST 148 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHH
Confidence 445678889999999999999999999987 7777753 5888999999999999999999999987422 2221
Q ss_pred HHH--HHHhcCCchHHHHHHHHHHhCCCccC
Q 042503 442 LSN--IYAEGGRWDDAETLRMWMRENNVKKS 470 (477)
Q Consensus 442 l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~ 470 (477)
+.. .+....+..+..++++.+..-|.+..
T Consensus 149 i~~DpdL~plR~~pef~eLlee~rk~G~~~g 179 (453)
T PLN03098 149 ILNDPDLAPFRASPEFKELQEEARKGGEDIG 179 (453)
T ss_pred HHhCcchhhhcccHHHHHHHHHHHHhCCccC
Confidence 111 12233455677788888887776443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0071 Score=49.86 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=39.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHH
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPWNS---GNYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~ 456 (477)
++..|.+.|.+..|..-++.+++..|+.+ .+...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 56678899999999999999999998864 45778888999999988554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0022 Score=45.36 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccc--------cHHHHHHHHHHhhhccCCCCChHHH
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGV-SPNKATFVGVLTCCAHAG--------LVEKARELFASMTGLHSIVPNLEHY 373 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 373 (477)
...|..+...+++.....+|+.+.+.|+ -|+..+|+.++.+..+.. .....+.+++.|. ..+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHHH
Confidence 3345556666888888888888888888 788888888888766432 3445667777777 46777888888
Q ss_pred HHHHHHHHh
Q 042503 374 GCMVDVLGR 382 (477)
Q Consensus 374 ~~l~~~~~~ 382 (477)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 777766554
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00083 Score=44.80 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=49.6
Q ss_pred HHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 378 DVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
..|.+.+++++|.++++++ ...| ++..+...+.++.+.|++++|.+.++++++..|+++....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 5677888888888888888 4444 4467777888888999999999999999998887665443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.12 Score=48.34 Aligned_cols=183 Identities=15% Similarity=0.097 Sum_probs=119.0
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCCCC---ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPRKN---VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
+.....|...+..-...|+.+.+.-.|++..-|- ...|-..+.-....|+.+-|..++....+--++-...+-..-.
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 4455667777788888889888888888877642 2345555554555588888887777766644333332222222
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCCh-HHHHHHHHHHHhcCCHHHHH---HHHHhc-CCCCCHHHHHHHHHH-----
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNL-EHYGCMVDVLGRSGCVREAY---DLIRSM-SIRPNAAIWGSLLSS----- 411 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~~----- 411 (477)
.-+-..|++..|..+++.+.+.. |+. ..-..-+....+.|..+.+. .++... ..+.+..+...+.--
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 22445789999999999998532 443 22233345566788888887 444433 223333333333222
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 412 CRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
+.-.++.+.|..++.++.+..|++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 334689999999999999999999999999988876555
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0014 Score=52.42 Aligned_cols=88 Identities=17% Similarity=0.262 Sum_probs=63.9
Q ss_pred CCCceeHHHHHHHHHh-----cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc----------------ccHHHHH
Q 042503 296 RKNVVSWNAMISGLAF-----NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA----------------GLVEKAR 354 (477)
Q Consensus 296 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 354 (477)
..+-.+|..+++.|.+ .|..+-....++.|.+.|+.-|..+|+.|++++=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3566667777777664 467777888899999999999999999999987642 2345566
Q ss_pred HHHHHhhhccCCCCChHHHHHHHHHHHhcC
Q 042503 355 ELFASMTGLHSIVPNLEHYGCMVDVLGRSG 384 (477)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (477)
+++++|. ..|+.||.+++..+++.+++.+
T Consensus 124 ~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQME-NNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHH-HcCCCCcHHHHHHHHHHhcccc
Confidence 7777776 5677777777777777666554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00037 Score=47.27 Aligned_cols=62 Identities=15% Similarity=0.164 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCC---CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLE----PWN---SGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.+++.+...|...|++++|+..++++++.. +.+ ..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466777777888888888888888776532 221 44677788888888888888888877654
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0048 Score=54.28 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM-S-IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
..+++.+..+|.+.+++.+|++..++. . .++|...+..-..++...|+++.|+..|+++++++|.|..+-..++.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 346788899999999999999999888 3 35667788888999999999999999999999999999999999998887
Q ss_pred hcCCchH-HHHHHHHHHhC
Q 042503 448 EGGRWDD-AETLRMWMREN 465 (477)
Q Consensus 448 ~~g~~~~-A~~~~~~~~~~ 465 (477)
+.....+ ..++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 7766555 47888888764
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.028 Score=46.44 Aligned_cols=127 Identities=9% Similarity=0.016 Sum_probs=69.1
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCCHHHHHHHH
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--------SIRPNAAIWGSLL 409 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~ 409 (477)
+.++.++.-.|.+.-....+.+..+ ...+.++.....|+..-.+.|+.+.|...|++. +..-+........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 4445555555556666666666653 333444455555555556666666666666533 2222222333333
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
..+.-++++..|...+.++...+|.++...+.=+-++.-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455556666666666666666666665555555555556666666666666554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.042 Score=51.42 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=55.7
Q ss_pred hHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHh
Q 042503 182 VDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESS 261 (477)
Q Consensus 182 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 261 (477)
.+-+.++-.++...+..+...+...+.+...+.-|-++|..|-+. ..+++.....++|.+|..+-+...
T Consensus 732 ~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hP-- 800 (1081)
T KOG1538|consen 732 VDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHP-- 800 (1081)
T ss_pred HHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCc--
Confidence 333444444444444444444444445555555566666555321 233344444555555444433221
Q ss_pred CCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 042503 262 GLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK 328 (477)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 328 (477)
..-+.+|-...+.++...++++|. .+|.+.|+..+|..+++++...
T Consensus 801 ---e~~~dVy~pyaqwLAE~DrFeEAq------------------kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 801 ---EFKDDVYMPYAQWLAENDRFEEAQ------------------KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred ---cccccccchHHHHhhhhhhHHHHH------------------HHHHHhcchHHHHHHHHHhhhh
Confidence 112222333444444444544444 3456677777888887777554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00064 Score=46.08 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc-----CC---CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM-----SI---RPN-AAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
.+++.+...|...|++++|+..|++. .. .|+ ..++..++.++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45666777777777777777777666 11 122 346777888888888888888888887654
|
... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.2 Score=48.66 Aligned_cols=177 Identities=11% Similarity=0.064 Sum_probs=112.2
Q ss_pred HHHhHHHHHhhcCChhHHHHHhccCCCCCc---chHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 042503 36 ILAHFVSVCGTLNEIKYATKIFNQMRNPSV---LLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLG 112 (477)
Q Consensus 36 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 112 (477)
....-+..+.+...++.|+.+-+.-..+.. .....-.+.+.+.|++++|..-|-+-... +.| ..++.-+..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 345567777788888888888775443211 23334445667889999999888766543 233 334556666
Q ss_pred cCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCch-HHhHHHHHHHHhcCChHHHHHHHHh
Q 042503 113 VGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDV-IVRNLMIHGFCKKGDVDKGLYLFRE 191 (477)
Q Consensus 113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 191 (477)
......-...++.+.+.|+. +...-..|+.+|.+.++.++-.+..+...+... .-....+..+.+.+-.++|.-+-.+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k 488 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATK 488 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence 66677777788888888877 666777899999999999999888887763111 1123444555555555555555444
Q ss_pred cCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 042503 192 MRERSVVSWNLMISSLGKSGRDSEALRLFHEM 223 (477)
Q Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 223 (477)
... +.. .+--.+-..|++++|++++..+
T Consensus 489 ~~~-he~---vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 489 FKK-HEW---VLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred hcc-CHH---HHHHHHHHhcCHHHHHHHHhcC
Confidence 333 122 2222334467778887777654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.26 Score=48.31 Aligned_cols=52 Identities=13% Similarity=0.062 Sum_probs=22.9
Q ss_pred HHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 377 VDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
+..-.+.++++.+...+..| ..+-...-..=+.+++...|+.++|...|+++
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333555555555555555 11112222222334444455555555555554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.055 Score=48.28 Aligned_cols=162 Identities=15% Similarity=0.059 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCC-------CceeHHHHHHHHHh---cCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRK-------NVVSWNAMISGLAF---NGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
..++-.|....+++..+++.+.+... ....-....-++.+ .|+.++|..++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555566777777777777766552 11112233445555 788888888888866655577888887777
Q ss_pred HHhhc---------cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC-HH---HHHHHH---Hhc----C---C
Q 042503 342 TCCAH---------AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC-VR---EAYDLI---RSM----S---I 398 (477)
Q Consensus 342 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~----~---~ 398 (477)
..|-. ....++|+..|.+.-+ +.|+..+--.++-.+.-.|. ++ +..++- ... + .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66531 2346778888876653 23443322222222222332 11 222222 111 1 1
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 399 RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 399 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
..+--.+.+++.++.-.|+.++|.+.++++.++.|+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 23444567788889999999999999999999987643
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0022 Score=51.44 Aligned_cols=97 Identities=9% Similarity=0.116 Sum_probs=69.7
Q ss_pred HHHhccC--CCCCcchHHHHHHHHHh-----cCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhcc-------------
Q 042503 54 TKIFNQM--RNPSVLLFNSMIKAYSL-----NGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGV------------- 113 (477)
Q Consensus 54 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------------- 113 (477)
...|+.. ...+-.+|..+++.+.+ .|..+=....++.|.+.|+.-|..+|+.|+..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3344444 33666677777777754 355666667777888888888888888888877542
Q ss_pred ---CCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCC
Q 042503 114 ---GDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQ 150 (477)
Q Consensus 114 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (477)
.+.+-|++++++|...|+-||..++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1345678889999999999999999988888866654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.03 Score=46.19 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHhcCCCCCc-----------------hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 417 HVELAEHAVKELINLEPWNSG-----------------NYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~-----------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
...+|...++.+++..|+++. .-..+++.|.+.|.+..|..-++.+++.
T Consensus 105 ~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 105 STRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345666667777777776632 2334678899999999999999999875
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.022 Score=42.75 Aligned_cols=89 Identities=17% Similarity=0.079 Sum_probs=60.8
Q ss_pred HHHHHhcCCHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch-HHHHHHH--HHh
Q 042503 377 VDVLGRSGCVREAYDLIRSM----SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN-YVLLSNI--YAE 448 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~--~~~ 448 (477)
.....+.|++++|.+.|+.+ +. .-....-..++.+|.+.|+++.|...+++.+++.|.++.+ |..+..+ +.+
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455778888888888887 11 1223456677888889999999999999999999887663 3333333 334
Q ss_pred cCC---------------chHHHHHHHHHHhC
Q 042503 449 GGR---------------WDDAETLRMWMREN 465 (477)
Q Consensus 449 ~g~---------------~~~A~~~~~~~~~~ 465 (477)
... ..+|..-|+++++.
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 433 56777777777764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0057 Score=55.12 Aligned_cols=63 Identities=19% Similarity=0.099 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNL----EHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
+.+...++.+..+|...|++++|+..|++..+. .|+. ..|..+..+|...|++++|+..+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 556778888899999999999999999988753 4543 35888899999999999999999887
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0068 Score=50.60 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=47.7
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCC-CHHHHHH
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN---LEHYGCMVDVLGRSGCVREAYDLIRSM----SIRP-NAAIWGS 407 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ 407 (477)
.|+.-+.. .+.|++..|...|....+.+ +-+ ...+-.|..++...|++++|..+|..+ +..| -+..+..
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 34444433 34455666666666555321 111 123334555555555555555555554 1111 2244555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
+..+..+.|+.++|...|+++.+..|..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 55555555555555555555555555433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.24 Score=43.68 Aligned_cols=284 Identities=14% Similarity=0.088 Sum_probs=132.6
Q ss_pred HHHHHHHhh--ccCCchhHHHHHHHHHHhcccCcchHHHHHHHH--HHhcCChhhHHHHhcccCC-CchHH--hHHHHHH
Q 042503 103 FAPLLKACL--GVGDLRVGQCVHGEIIRSGFERFGSIRIGVVEL--YTSCGQMDDGMKVFDEMSH-RDVIV--RNLMIHG 175 (477)
Q Consensus 103 ~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~~--~~~l~~~ 175 (477)
|..|-.+++ ..|+-..|.+.-.+..+. +..|......++.+ -.-.|+++.|.+-|+.|.+ |.... ...|.-.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle 163 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE 163 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence 445555543 345666666555443321 22333333334433 3345888888888888876 33221 1222333
Q ss_pred HHhcCChHHHHHHHHhcCC--CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHH--HHHHHHHhhc---cC
Q 042503 176 FCKKGDVDKGLYLFREMRE--RS-VVSWNLMISSLGKSGRDSEALRLFHEMRDQA-FELDEAT--VVAVLPICAR---LG 246 (477)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~--~~~l~~~~~~---~~ 246 (477)
..+.|+.+.|.+.-+.... |. .-.+...+...+..|+|+.|+++++.-.... +.++..- -..++.+-+. ..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 3457788887777776654 32 2366778888888999999998888765432 3333321 1122222111 12
Q ss_pred cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHH
Q 042503 247 AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQ 324 (477)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (477)
+...|...-.+..+.. |+-...-..-..++++.|+..++-.+++.+-+ |.+..+. +-.+.+.|+. +..-+++
T Consensus 244 dp~~Ar~~A~~a~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gdt--a~dRlkR 317 (531)
T COG3898 244 DPASARDDALEANKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGDT--ALDRLKR 317 (531)
T ss_pred ChHHHHHHHHHHhhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCCc--HHHHHHH
Confidence 3333444443443333 22222223334455555555555555555543 2222221 1112233322 2222222
Q ss_pred HHH-cCC-CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHhc
Q 042503 325 MIA-KGV-SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG-RSGCVREAYDLIRSM 396 (477)
Q Consensus 325 m~~-~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 396 (477)
... ..+ +.+..+...+..+-...|++..|..--+.... ..|....|..|.+.-. ..|+-.++...+-+.
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 211 011 22334444444455555555554443333321 2344444444444332 225555555555444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.041 Score=40.21 Aligned_cols=140 Identities=19% Similarity=0.195 Sum_probs=89.5
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHH
Q 042503 310 AFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREA 389 (477)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (477)
.-.|..++..++..+..... +..-+|+++--....-+-+-..++++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 34678888888888877643 56667777766666666666677777665322221 23333333
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 042503 390 YDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVK 468 (477)
Q Consensus 390 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (477)
..-+-.+ ..+....+..+.+...+|.-+.-.+++..+.+.+..+|....-++.+|.+.|+..++.+++++.-+.|++
T Consensus 76 i~C~~~~--n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKR--NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHT--T---HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHh--cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3333333 2345566777888899999999999999998766667999999999999999999999999999999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.2 Score=41.79 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=91.4
Q ss_pred HHhcCCchHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----
Q 042503 309 LAFNGRGELGVELYEQMIAKG--VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR---- 382 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 382 (477)
-.+.|++++|.+.|+.+.... -+-...+...++.++.+.++++.|+..+++....++-.||.. |...+.++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhccC
Confidence 445566666666666666531 122344455555666666666666666666665555555542 2222222221
Q ss_pred ---cCCHHHHHHHHHhc----CC------CCCHHH------------HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-
Q 042503 383 ---SGCVREAYDLIRSM----SI------RPNAAI------------WGSLLSSCRTHGHVELAEHAVKELINLEPWNS- 436 (477)
Q Consensus 383 ---~g~~~~A~~~~~~~----~~------~p~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~- 436 (477)
..+...+.+.|..+ .. .||... =..+.+.|.+.|.+..|..-++++++.-|+.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~ 202 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA 202 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc
Confidence 12222233333222 11 222211 12345668899999999999999998876554
Q ss_pred --chHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 042503 437 --GNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSP 471 (477)
Q Consensus 437 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 471 (477)
..+..+..+|...|-.++|.+.-+- +..+.+.++
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~~v-l~~N~p~s~ 238 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTAKV-LGANYPDSQ 238 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHHHH-HHhcCCCCc
Confidence 4566777889999999999776544 445544443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0099 Score=52.37 Aligned_cols=65 Identities=14% Similarity=0.008 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 402 AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..++..+..++.+.+++..|++...++++++|.|..+++.-+.+|...|+++.|+..|+++++..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 34677888899999999999999999999999999999999999999999999999999998764
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.45 Score=44.65 Aligned_cols=137 Identities=7% Similarity=0.068 Sum_probs=85.1
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHH
Q 042503 63 PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEY-TFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGV 141 (477)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 141 (477)
.+...|+.++.---.....+.+..++..+... .|... -|......-.+.|..+.+.++|++.+.. ++.+...|...
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHH
Confidence 44556777776555555556667777777653 34443 3444444456778888888888887764 45566677666
Q ss_pred HHHHH-hcCChhhHHHHhcccCC------CchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHH
Q 042503 142 VELYT-SCGQMDDGMKVFDEMSH------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNL 202 (477)
Q Consensus 142 ~~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 202 (477)
...+. ..|+.+.....|+.... .....|...+.--..++++.....+++++.+-....|+.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~ 187 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNR 187 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHH
Confidence 65444 34666667777776654 344556666666666777777777777776644443333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.025 Score=41.15 Aligned_cols=88 Identities=19% Similarity=0.120 Sum_probs=41.1
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCC--CHHHHHHHHHHHHHcCC
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM----SIRP--NAAIWGSLLSSCRTHGH 417 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~~~ 417 (477)
....|+.+.|++.|.+... -.+.....||.-..++.-+|+.++|+.-+++. +-+- --..|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4445555555555555542 12334445555555555555555555555444 1110 01223333334445555
Q ss_pred hHHHHHHHHHHHhcCC
Q 042503 418 VELAEHAVKELINLEP 433 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p 433 (477)
.+.|..-|+.+-+++.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 5555555555555543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.22 Score=42.33 Aligned_cols=151 Identities=17% Similarity=0.119 Sum_probs=100.8
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCH
Q 042503 307 SGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCV 386 (477)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (477)
......|++.+|..+|+...... +-+......+..++...|+.+.|..++..+.... -.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 34567788888888888888764 4445666778888889999999999988776311 111111112234445555555
Q ss_pred HHHHHHHHhcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCchHHHHHH
Q 042503 387 REAYDLIRSMSIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLE--PWNSGNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 387 ~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
.+...+-++..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..++..+.-.|.-+.+...+
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 55555555553345 66777778888888999999988888777654 556777888888888888555544333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.02 Score=47.91 Aligned_cols=93 Identities=19% Similarity=0.139 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHH
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SIRP----NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN---SGNYVLLS 443 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 443 (477)
.|+.-+. +.+.|++.+|...|... ..-| ....+.-|+.++...|+++.|..+|..+.+..|.+ |+.+.-|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4444433 34556677777777766 1112 12234446677777777777777777777666544 45566677
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 042503 444 NIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
....+.|+.++|...|+++++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777665
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.77 Score=44.29 Aligned_cols=315 Identities=11% Similarity=0.003 Sum_probs=177.2
Q ss_pred hcccCcchHHH-----HHHHHHHhcCChhhHHHHhcccCCCc---hHHhHHHHHHHHhcC---ChHHHHHHHHhcCC--C
Q 042503 129 SGFERFGSIRI-----GVVELYTSCGQMDDGMKVFDEMSHRD---VIVRNLMIHGFCKKG---DVDKGLYLFREMRE--R 195 (477)
Q Consensus 129 ~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~--~ 195 (477)
.|++.+..-|. .+++-+...+.+..|.++-..+..|. ..++.....-+.+.. +.+.+..+-+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 45665555554 35566777889999999988887765 556666666666653 33334444455554 4
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHH
Q 042503 196 SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAF----ELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVG 271 (477)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (477)
....|...+......|+++-|..+++.=...+- -.+..-+...+.-+...|+.+....++-.+.+.-.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~-------- 577 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN-------- 577 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH--------
Confidence 556788888888889999999888764221110 01222344455556666777666666555544321
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC-CCceeHHHHHHHHHhcCCchHHHH-HHHHHHHc-CCCCCHHHHHHHHHHhhccc
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPR-KNVVSWNAMISGLAFNGRGELGVE-LYEQMIAK-GVSPNKATFVGVLTCCAHAG 348 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~-~~~~m~~~-~~~~~~~~~~~l~~~~~~~~ 348 (477)
....+....+...|..+|.+..+ .|..+ +-+.|.+..+...+-. .++...+. -+.+-..........|.+..
T Consensus 578 --~s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk 652 (829)
T KOG2280|consen 578 --RSSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSK 652 (829)
T ss_pred --HHHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhh
Confidence 01111112223334444443332 11111 1111222222221111 11111110 01122222333344444433
Q ss_pred c----------HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCh
Q 042503 349 L----------VEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHV 418 (477)
Q Consensus 349 ~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 418 (477)
. ..+-+.+.+.+..+.+.....-+.+--+.-+...|+..+|.++-++.. -||-..|.--+.++...+++
T Consensus 653 ~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kw 731 (829)
T KOG2280|consen 653 EKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKW 731 (829)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhH
Confidence 3 122233333444344433444455555667778899999999999986 46777888888899999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 419 ELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
++-+++-+.. . +|--|.-...++.+.|+.++|.+++-+.
T Consensus 732 eeLekfAksk---k--sPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 732 EELEKFAKSK---K--SPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHHHHHhcc---C--CCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 8877665442 2 2667888999999999999999988655
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.23 Score=44.45 Aligned_cols=163 Identities=12% Similarity=-0.007 Sum_probs=105.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhc---cccHHHHHHHHHHhhhccCCCCChHHHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKG---VSPNKATFVGVLTCCAH---AGLVEKARELFASMTGLHSIVPNLEHYGC 375 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 375 (477)
.-.++-+|....+++..+++.+.+.... +.-....-....-++.+ .|+.++|++++..+.. ..-.+++.+|..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHH
Confidence 3345556888999999999999998752 11122222234445566 8999999999999552 445778888888
Q ss_pred HHHHHHh---------cCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChH----HHHHHH---HH-HHhcC----C
Q 042503 376 MVDVLGR---------SGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVE----LAEHAV---KE-LINLE----P 433 (477)
Q Consensus 376 l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~----~a~~~~---~~-~~~~~----p 433 (477)
++..|-. ....++|+..|.+. .+.|+...=-.++..+...|... +..++- .. +.+.+ -
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 8877642 23588999999988 66676543333333333444322 222222 11 11121 1
Q ss_pred CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 434 WNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 434 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.+--.+.+++.+..-.|+.++|.+..++|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 22334668888889999999999999999876
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.091 Score=47.81 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=101.6
Q ss_pred eeH--HHHHHHHHhc-----CCchHHHHHHHHHHHc-CCCCC-HHHHHHHHHHhhcc---------ccHHHHHHHHHHhh
Q 042503 300 VSW--NAMISGLAFN-----GRGELGVELYEQMIAK-GVSPN-KATFVGVLTCCAHA---------GLVEKARELFASMT 361 (477)
Q Consensus 300 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~m~~~-~~~~~-~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~ 361 (477)
..| ..++.+.... ...+.|..+|.+.... ...|+ ...|..+..++... .+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5566555442 2345677788888721 22333 55666666555422 23456666666666
Q ss_pred hccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch-
Q 042503 362 GLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN- 438 (477)
Q Consensus 362 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~- 438 (477)
+.. +.|......+..++.-.++++.|...|++. ...||. .+|......+.-.|+.++|.+.++++++++|....+
T Consensus 332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 422 556677777777777778888999999888 667765 566666677778889999999999999988865433
Q ss_pred -HHHHHHHHHhcCCchHHHHHHH
Q 042503 439 -YVLLSNIYAEGGRWDDAETLRM 460 (477)
Q Consensus 439 -~~~l~~~~~~~g~~~~A~~~~~ 460 (477)
.-..+..|+..+ .++|++++-
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHh
Confidence 233333455544 667776653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.023 Score=44.00 Aligned_cols=69 Identities=16% Similarity=0.189 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh----ccCCCCChHH
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG----LHSIVPNLEH 372 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 372 (477)
..++..+...|++++|..+++.+.... |.+...+..+|.++...|+...|.++|+.+.. ..|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555566677777777777776664 55666677777777777777777766665532 3455555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.23 Score=45.33 Aligned_cols=140 Identities=9% Similarity=0.014 Sum_probs=96.0
Q ss_pred ChHHHHHHhccCC---CCC---ceeHHHHHHHHHh---------cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 283 ILDTARNVFKEIP---RKN---VVSWNAMISGLAF---------NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 283 ~~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
..+.|..+|.+.. +-| ...|..+..++.. .....+|.++-++..+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 3567888899887 434 3445555444332 123456777888888887 77888888888888888
Q ss_pred ccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHH---HHHHHHHHHHHcCChHHHH
Q 042503 348 GLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAA---IWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~~~~~~a~ 422 (477)
++++.|...|++.... .|| ...|........-.|+.++|.+.+++. ...|... .....+..|+.. ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 8999999999999853 344 455655666677789999999999995 6666543 233333345444 566677
Q ss_pred HHHHH
Q 042503 423 HAVKE 427 (477)
Q Consensus 423 ~~~~~ 427 (477)
.+|-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 76655
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.032 Score=41.45 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH
Q 042503 330 VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV 379 (477)
Q Consensus 330 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (477)
..|+..++.+++.+|+..+++..|.++.+.+...++++-+...|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44666666666666666666666666666666666666566666665543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.2 Score=47.32 Aligned_cols=116 Identities=19% Similarity=0.131 Sum_probs=85.6
Q ss_pred cccHHHHHHHHHHhhhccCCCCChHHHHHH-HHHHHhcCCHHHHHHHHHhc-CC-----CCCHHHHHHHHHHHHHcCChH
Q 042503 347 AGLVEKARELFASMTGLHSIVPNLEHYGCM-VDVLGRSGCVREAYDLIRSM-SI-----RPNAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~~~~~ 419 (477)
..+.+.|.++++.+.+. -|+...|... .+.+...|++++|++.|++. .. +.....+.-++..+.-..+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 45788899999999853 3666555443 46677889999999999976 11 122345566777888899999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHH-HHhcCCc-------hHHHHHHHHHHhC
Q 042503 420 LAEHAVKELINLEPWNSGNYVLLSNI-YAEGGRW-------DDAETLRMWMREN 465 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~-------~~A~~~~~~~~~~ 465 (477)
+|.+.+.++.+.+..+...|..+.-+ +...|+. ++|.++++++...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999999888766655544444 5578888 8888888887553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.011 Score=32.04 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
..+..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456677778888888888888888888888764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.5 Score=39.84 Aligned_cols=222 Identities=18% Similarity=0.110 Sum_probs=97.9
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHH
Q 042503 211 GRDSEALRLFHEMRDQAFEL-DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARN 289 (477)
Q Consensus 211 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 289 (477)
+....+...+.......... ....+......+...+....+...+.........+.....+......+...+.+..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444444332111 23444455555555555555555555554420114444444555555555555555555
Q ss_pred HhccCCC--CCc-eeHHHHHH-HHHhcCCchHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhc
Q 042503 290 VFKEIPR--KNV-VSWNAMIS-GLAFNGRGELGVELYEQMIAKGV--SPNKATFVGVLTCCAHAGLVEKARELFASMTGL 363 (477)
Q Consensus 290 ~~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 363 (477)
.+..... ++. ........ .+...|+++.+...+.+...... ......+......+...++.+.+...+......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 5555443 111 11222222 44555555555555555533110 012222222233334445555555555555421
Q ss_pred cCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 364 HSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 364 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
.+. ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 --NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 122 2344444455555555555555555554 22332 233333333333444455555555555555543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.2 Score=37.77 Aligned_cols=20 Identities=15% Similarity=0.074 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHhcCCCCCc
Q 042503 418 VELAEHAVKELINLEPWNSG 437 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~ 437 (477)
...|...|+++++..|++.-
T Consensus 115 ~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHHHHHHCcCChh
Confidence 55788888888888887653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.076 Score=40.99 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=43.3
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHH
Q 042503 310 AFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREA 389 (477)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (477)
...|++++|..+|+-+.-.+ +-+..-+..|..++-..+++++|+..|..... .. ..|+..+-....+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHHHH
Confidence 34566666666666555543 33444455555555555666666666655442 11 12222233345555666666666
Q ss_pred HHHHHhc
Q 042503 390 YDLIRSM 396 (477)
Q Consensus 390 ~~~~~~~ 396 (477)
...|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 6655555
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.71 Score=42.05 Aligned_cols=149 Identities=11% Similarity=-0.007 Sum_probs=77.2
Q ss_pred CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC--hHH
Q 042503 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSP---NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN--LEH 372 (477)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 372 (477)
...+|..+...+.+.|+++.|...+..+...+..+ .......-+......|+..+|...++.... ..+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~-~~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK-CRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhhhcccccc
Confidence 34466677777777788888877777776643111 223333344555666777777777776663 111111 111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHc------CChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 373 YGCMVDVLGRSGCVREAYDL-IRSMSIRPNAAIWGSLLSSCRTH------GHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
...+...+.. ..+..... ........-...+..+...+... ++.+.+...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000112334444444444 788888999999999998888888888877
Q ss_pred HHhc
Q 042503 446 YAEG 449 (477)
Q Consensus 446 ~~~~ 449 (477)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.33 E-value=2.3 Score=46.98 Aligned_cols=317 Identities=12% Similarity=0.057 Sum_probs=177.0
Q ss_pred HHHHHHHhcCChhhHHHHhcccC----CC--chHHhHHHHHHHHhcCChHHHHHHHHh-cCCCChhhHHHHHHHHHhcCC
Q 042503 140 GVVELYTSCGQMDDGMKVFDEMS----HR--DVIVRNLMIHGFCKKGDVDKGLYLFRE-MRERSVVSWNLMISSLGKSGR 212 (477)
Q Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 212 (477)
.+..+-.+++.+.+|.-.++.-. +. ....+..+...|...+++|...-+... ...|+. ..-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 44456667888899988888832 21 122333444578888888877777663 333332 234445667899
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH-HHHHHHhcCChHHHHHHh
Q 042503 213 DSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA-LVDFYCKCGILDTARNVF 291 (477)
Q Consensus 213 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~ 291 (477)
+..|...|+.+.+.+ ++...+++-++......+.++......+-..... ++...-++. =+.+--+.++++......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 999999999998764 4446778877777777777776666555444433 233332222 234445667777776665
Q ss_pred ccCCCCCceeHHHH--HHHHHhcCCch--HHHHHHHHHHHcCCCC--------C-HHHHHHHHHHhhccccHHHHHHHHH
Q 042503 292 KEIPRKNVVSWNAM--ISGLAFNGRGE--LGVELYEQMIAKGVSP--------N-KATFVGVLTCCAHAGLVEKARELFA 358 (477)
Q Consensus 292 ~~~~~~~~~~~~~l--~~~~~~~~~~~--~a~~~~~~m~~~~~~~--------~-~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (477)
. ..+..+|... +..+.+..+-+ .-...++.+.+.-+.| + ...|..++....-. +.+.-.+.+.
T Consensus 1542 ~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~ 1617 (2382)
T KOG0890|consen 1542 S---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELK 1617 (2382)
T ss_pred h---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 5 4455556554 23333322222 1122333333321111 0 12233333322111 1111111111
Q ss_pred HhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 042503 359 SMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM----SIRP-----NAAIWGSLLSSCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 429 (477)
.........-+...|..-+..-....+..+-+-.+++. ..+| -..+|....+.....|.++.|...+-++.
T Consensus 1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 11100011111222322222222222233333233332 1122 24689999999999999999999988888
Q ss_pred hcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 042503 430 NLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVK 468 (477)
Q Consensus 430 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (477)
+..+ +.++...+..+...|+-..|+.++++-++...+
T Consensus 1698 e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1698 ESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 7774 789999999999999999999999999876543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.2 Score=43.23 Aligned_cols=112 Identities=9% Similarity=0.035 Sum_probs=45.4
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHH----HHHHHHHHhcCCHHH
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHY----GCMVDVLGRSGCVRE 388 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~ 388 (477)
|+..+|-..++++.+. .|.|...+...-.+|...|+.+.-...++++.. ...++...| ..+..++..+|-+++
T Consensus 117 g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4444444444444433 233444444444444444444444444444441 122332222 122233334455555
Q ss_pred HHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 042503 389 AYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKE 427 (477)
Q Consensus 389 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 427 (477)
|.+.-++. .+.| |.-.-.+....+-..|+.+++.++..+
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55444444 2222 222333333344444444444444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.42 Score=39.42 Aligned_cols=52 Identities=12% Similarity=0.101 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcC----CCCCchHHHHHHHHHhcCCchHHHHH
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELINLE----PWNSGNYVLLSNIYAEGGRWDDAETL 458 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (477)
...+-.+....|+..|+..++.-.+.. |.+..+...|+.+| ..|+.+++.++
T Consensus 194 va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 194 VAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 333334444445555555555543322 34444444444443 33444444433
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.012 Score=32.06 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
.+|..++.++...|++++|+..++++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777788888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.13 Score=38.36 Aligned_cols=79 Identities=15% Similarity=0.267 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhh--------------hccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc---
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMT--------------GLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--- 396 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 396 (477)
..++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3455555666666666665555554331 12233455555555555555555555555555544
Q ss_pred -CCCCCHHHHHHHHHHH
Q 042503 397 -SIRPNAAIWGSLLSSC 412 (477)
Q Consensus 397 -~~~p~~~~~~~l~~~~ 412 (477)
+++-+...|..|+.-+
T Consensus 82 Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWA 98 (126)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 4444455555555433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.8 Score=39.99 Aligned_cols=19 Identities=5% Similarity=-0.162 Sum_probs=12.4
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 042503 411 SCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~ 429 (477)
.+.+.++++.|.+.|+-..
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3556777777777776543
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.44 Score=36.51 Aligned_cols=129 Identities=13% Similarity=0.040 Sum_probs=81.4
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV 379 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (477)
.....++..+...+.+.....+++.+...+ +.+....+.++..|++.+ .......++. ..+.......+..
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~ 78 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKL 78 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHH
Confidence 344566777777778888888888888776 466677788888887653 3444444442 1222333446677
Q ss_pred HHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 042503 380 LGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTH-GHVELAEHAVKELINLEPWNSGNYVLLSNIYAE 448 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (477)
+.+.+.++++.-++.+++.. ...+..+... ++++.|.+++++ +.++..|..++..+..
T Consensus 79 c~~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHHcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 77778888888888877522 2233333344 778888877765 2356677777766543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.71 Score=42.47 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCCCC
Q 042503 420 LAEHAVKELINLEPWN 435 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~~ 435 (477)
.|.+.+.++++.+|.-
T Consensus 364 ~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 3667788888877654
|
The molecular function of this protein is uncertain. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.046 Score=46.55 Aligned_cols=62 Identities=19% Similarity=0.305 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.++..++..+...|+++.+.+.+++.+..+|-+...|..++.+|.+.|+...|+..++++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555666777777788888888888888887778888888888888888888877777654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.92 Score=38.76 Aligned_cols=118 Identities=12% Similarity=0.043 Sum_probs=77.8
Q ss_pred HHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc----eeHHHHHHHHHhcCCc
Q 042503 240 PICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV----VSWNAMISGLAFNGRG 315 (477)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~ 315 (477)
......|++..+...++.+.... +.+..+...++.+|...|+.+.|..++..+..... .....-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34566788888888888888877 66666777889999999999999999998875221 1122234444455555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
.+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5544444444332 3355566666777777788877776665554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.63 Score=37.65 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=16.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.+|..|++.|...|+.++|..+|+-.+.
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4556666666666666666666655443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.22 Score=45.63 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN---AAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
.+-..+..+..+.|+.++|++.++++ ...|. ......|+.++...+.+.++..++.+.-+.
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 33345666777788888888888887 32232 245667778888888888888888876444
|
The molecular function of this protein is uncertain. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.99 Score=37.95 Aligned_cols=196 Identities=20% Similarity=0.110 Sum_probs=125.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC-----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR-----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLT 342 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 342 (477)
..........+...+.+..+...+..... .....+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 44556667777777777777776666542 233455556666667777778888887777654332 122222222
Q ss_pred -HhhccccHHHHHHHHHHhhhccCC--CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC--HHHHHHHHHHHHHcC
Q 042503 343 -CCAHAGLVEKARELFASMTGLHSI--VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN--AAIWGSLLSSCRTHG 416 (477)
Q Consensus 343 -~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~ 416 (477)
++...|+++.+...+.+... ... ......+......+...++.+.+...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 57777888888888887752 211 123334444444566777888888888777 33333 566777777777777
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 417 HVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+++.+...+..+....|.....+..+...+...|.++++...+++....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888877765556666666666666777777777776654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.5 Score=39.81 Aligned_cols=402 Identities=11% Similarity=0.065 Sum_probs=227.9
Q ss_pred HHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCc---chHHHHHHHHHhcCCCchHHHHHHHHHhCCC
Q 042503 20 QIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSV---LLFNSMIKAYSLNGPSEEPVKLFALLKNLGI 96 (477)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 96 (477)
++-+.+... |.|+..|-++++-+..+|..++.+++++++..|-+ .+|..-+++-...+++.....+|.+.....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~- 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS- 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-
Confidence 444444443 56789999999999999999999999999998654 478888888888899999999999998764
Q ss_pred CCCcccHHHHHHHhhccCCc------hhHHHHHHHHHH-hcccCcc-hHHHHHHHHH---------HhcCChhhHHHHhc
Q 042503 97 WPDEYTFAPLLKACLGVGDL------RVGQCVHGEIIR-SGFERFG-SIRIGVVELY---------TSCGQMDDGMKVFD 159 (477)
Q Consensus 97 ~p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~-~~~~~~~-~~~~~l~~~~---------~~~g~~~~A~~~~~ 159 (477)
.+...|...+..-.+.++. ....+.|+-.+. .+++|-. ..|+..+..+ -.+.+.|...+.+.
T Consensus 107 -l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 107 -LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred -ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 3455555555443333211 112233333333 3444432 3444433322 12344556666666
Q ss_pred ccCCC----------chHHhHHHHHHHH-h------cCChHHHHHHHHhcCC-------C---ChhhHHH----------
Q 042503 160 EMSHR----------DVIVRNLMIHGFC-K------KGDVDKGLYLFREMRE-------R---SVVSWNL---------- 202 (477)
Q Consensus 160 ~~~~~----------~~~~~~~l~~~~~-~------~~~~~~a~~~~~~~~~-------~---~~~~~~~---------- 202 (477)
++... |-..|..=++... + .--+-.|.+.++++.. . +..+++.
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 66541 1111111111110 0 1112334444444321 1 1112222
Q ss_pred -HHHHHHhc-----CC-hh-HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHH
Q 042503 203 -MISSLGKS-----GR-DS-EALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNAL 274 (477)
Q Consensus 203 -l~~~~~~~-----~~-~~-~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 274 (477)
.|..-... |+ .. ..--+++..... +...+..|--...-+...++-+.|.+.... |+ +..+.....+
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~-~~spsL~~~l 339 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVER----GI-EMSPSLTMFL 339 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cc-cCCCchheeH
Confidence 11111100 00 00 000111111110 111112221111122233444444433322 22 3333333334
Q ss_pred HHHHHhcCChHHHHHHhccCC---------------------------------CCCceeHHHHHHHHHhcCCchHHHHH
Q 042503 275 VDFYCKCGILDTARNVFKEIP---------------------------------RKNVVSWNAMISGLAFNGRGELGVEL 321 (477)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~ 321 (477)
...|.-.++.+.....|+... ..-...|...+....+....+.|..+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 444444444444444333321 01223566777777788889999999
Q ss_pred HHHHHHcC-CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHH-HHHHHHHHhcCCHHHHHHHHHhc--C
Q 042503 322 YEQMIAKG-VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHY-GCMVDVLGRSGCVREAYDLIRSM--S 397 (477)
Q Consensus 322 ~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~--~ 397 (477)
|.+..+.| +.++...+++++.-++ .|+...|..+|+.-... .||...| +..+..+...++-+.|..+|+.. .
T Consensus 420 F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 420 FIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence 99999988 6788888999998665 58889999999876522 3444443 55667778899999999999966 3
Q ss_pred CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 398 IRPN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 398 ~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
+..+ ...|..++..-..-|+...+..+-+++.+.-|..
T Consensus 496 ~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 496 LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 3333 5789999999999999999999888888887763
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.39 Score=44.71 Aligned_cols=132 Identities=13% Similarity=0.151 Sum_probs=75.4
Q ss_pred HHHhcCCCchHHHHHH--HHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCCh
Q 042503 74 AYSLNGPSEEPVKLFA--LLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQM 151 (477)
Q Consensus 74 ~~~~~~~~~~a~~~~~--~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (477)
...-+++++.+.+..+ ++.. .+ +....+.+++.+.+.|..+.|.++.+.- . .-.+...+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCH
Confidence 3344666666655554 1111 11 1334666777777777777777664322 1 123445677888
Q ss_pred hhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 042503 152 DDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQA 227 (477)
Q Consensus 152 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 227 (477)
+.|.++.++.. +...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888777765 444778888888888888888888877654 5566666777777766666665555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.79 Score=40.01 Aligned_cols=101 Identities=13% Similarity=0.001 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 372 HYGCMVDVLGRSGCVR---EAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
+...++.+|...+..+ +|.++++.+ +-.|+ +.++..-+..+.+.++.+.+.+.+.+|+..-+.....+...+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 3445555665555433 334444444 22222 233334445555566666666666666655443333444433333
Q ss_pred H--hcCCchHHHHHHHHHHhCCCccCCC
Q 042503 447 A--EGGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 447 ~--~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
. .......|...+..++-.-+.+++.
T Consensus 166 ~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 166 KQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 1 1122344555555555544444444
|
It is also involved in sporulation []. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.68 Score=40.60 Aligned_cols=128 Identities=15% Similarity=0.016 Sum_probs=70.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCC-----CCHHHHHHHHHHhhccccHHHHHHHHHHhhh---ccCCCCChHHHH
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGVS-----PNKATFVGVLTCCAHAGLVEKARELFASMTG---LHSIVPNLEHYG 374 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ 374 (477)
..+..++...+.++++++.|+......-. .....+..|...|....|+++|.-+..+..+ ..++..-...|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 34555666666677777777665542111 1223456666667777777776655544322 222221112222
Q ss_pred H-----HHHHHHhcCCHHHHHHHHHhc-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 375 C-----MVDVLGRSGCVREAYDLIRSM-------SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 375 ~-----l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
. |.-++...|++.+|.+..++. |.+|. ......+...|...|+.+.|..-|+.+..
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2 233455666666666665554 33332 24556667777778888887777777654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.054 Score=42.84 Aligned_cols=102 Identities=11% Similarity=0.028 Sum_probs=63.9
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHH
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPN-----LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRT 414 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~ 414 (477)
.-+...|++++|..-|..+.+.. ++. ...|..-..++.+.+.++.|+.-..+. .+.|+. ..+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 44677888888888888877432 222 223444455667777777777776665 445533 233333456667
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 415 HGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
...++.|++-|+++.+.+|....+....++.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 7778888888888888887655444444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.66 E-value=2.5 Score=41.65 Aligned_cols=147 Identities=10% Similarity=0.034 Sum_probs=95.8
Q ss_pred HHhHHHHHhhcCChhHHHHHhccCCC-CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCC
Q 042503 37 LAHFVSVCGTLNEIKYATKIFNQMRN-PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGD 115 (477)
Q Consensus 37 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 115 (477)
.....+-+-+.|++++|...|-+-.. .++ ..+|.-|....+...-...++.+.+.|+. +..--..|+.+|.+.++
T Consensus 371 ~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~---s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 371 HRKYGDYLYGKGDFDEATDQYIETIGFLEP---SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHcccCCh---HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence 33444455578999999888765443 222 35666777777777778888899988854 55555778899999999
Q ss_pred chhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCC
Q 042503 116 LRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE 194 (477)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 194 (477)
.++-.+..+..- .|.- ..-....+..+.+.+-.++|..+-..... .......+ +-..+++++|++.++.++-
T Consensus 447 ~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 447 VEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred hHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 888766655432 1111 11234556667777777777766555443 22222333 3457889999999998875
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.68 Score=43.17 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=99.4
Q ss_pred HHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHH
Q 042503 108 KACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLY 187 (477)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 187 (477)
+...-.++++.+.+..+.-.-. +.......+.++..+.+.|..+.|+++..+ | ..-.....+.|+++.|.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---~-----~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD---P-----DHRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----H-----HHHHHHHHHCT-HHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC---h-----HHHhHHHHhcCCHHHHHH
Confidence 4445667888766655311100 111245578889999999999999988664 2 233455678999999999
Q ss_pred HHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccch
Q 042503 188 LFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKV 267 (477)
Q Consensus 188 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 267 (477)
+.++.. +...|..|.....++|+++-|...|.+..+ +..++-.|.-.|+.+.-.++.+.+...|. .
T Consensus 340 ~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--~- 405 (443)
T PF04053_consen 340 IAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD--I- 405 (443)
T ss_dssp HCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---H-
T ss_pred HHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC--H-
Confidence 887766 566999999999999999999999987643 44556667777887777777777776662 2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhcc
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKE 293 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 293 (477)
+....++.-.|+.++..+++.+
T Consensus 406 ----n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 406 ----NIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ----HHHHHHHHHHT-HHHHHHHHHH
T ss_pred ----HHHHHHHHHcCCHHHHHHHHHH
Confidence 2233344445666555555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.59 Score=35.78 Aligned_cols=43 Identities=12% Similarity=0.240 Sum_probs=23.9
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhc
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTL 47 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 47 (477)
.++..+...+.+......++.+...+ +.++..++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34555555555556666666655554 24555666666666554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.14 Score=44.68 Aligned_cols=161 Identities=10% Similarity=0.032 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHH-cCCCCC---HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC----ChHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIA-KGVSPN---KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP----NLEHY 373 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~ 373 (477)
|..+..++-+.-++.+++.+-+.-.. .|..|. ......+..++...+.++++++.|+....-..-.. ...++
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 44444555555555555555444332 222221 12334567778888899999999988763221111 23578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-------CCCCCHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhcC------CCC
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM-------SIRPNAA-----IWGSLLSSCRTHGHVELAEHAVKELINLE------PWN 435 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~ 435 (477)
-.|...|.+..++++|.-+..+. +++.-.. ....|.-++...|....|.+..+++.++. |..
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 88999999999999987766555 3222222 33445567888899999999888886543 444
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
......+++.|...|+.+.|..-++..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 567788999999999999998887764
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.15 Score=42.88 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=74.3
Q ss_pred HHHhccCC--CCCceeHHHHHHHHHh-----cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc------------
Q 042503 288 RNVFKEIP--RKNVVSWNAMISGLAF-----NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG------------ 348 (477)
Q Consensus 288 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~------------ 348 (477)
+..|..+. +.|-.+|-.++..+.. .+..+-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444444 3566677777777764 3567777778899999999999999999998876532
Q ss_pred ----cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCH
Q 042503 349 ----LVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCV 386 (477)
Q Consensus 349 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 386 (477)
+-+=+++++++|. ..|+.||..+-..|+.++++.+..
T Consensus 134 HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 2344788889998 689999999998999998887743
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.57 Score=36.40 Aligned_cols=122 Identities=13% Similarity=0.094 Sum_probs=70.5
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHH-HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHH--HHHHHhcCC
Q 042503 309 LAFNGRGELGVELYEQMIAKGVSPNKA-TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCM--VDVLGRSGC 385 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~ 385 (477)
+++.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-....+|.-..-...| ...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456677888888888888766432221 11222334567788888888888876432222111111111 223456777
Q ss_pred HHHHHHHHHhcCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 386 VREAYDLIRSMSI---RPNAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 386 ~~~A~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
+++...-.+-+.. +.....-..|.-+-.+.|++..|...|+.+.+
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 7777777776621 11223345566666777888888887777765
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.33 E-value=1 Score=35.23 Aligned_cols=130 Identities=12% Similarity=0.087 Sum_probs=64.1
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcC--ChhhHHHHhcccC
Q 042503 85 VKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCG--QMDDGMKVFDEMS 162 (477)
Q Consensus 85 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 162 (477)
.+.++.+.+.+++|+...+..+++.+.+.|++.. +..++..++-+|.......+-.+.... -..-|..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3455566667777887888888888887777554 334444445555444333322221110 0222333333332
Q ss_pred CCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042503 163 HRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHE 222 (477)
Q Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (477)
..+..++..+...|++-+|.+.......-+......++.+..+.++...=..+++-
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~f 145 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRF 145 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 12334445555566666666666554333333334444444444444433333333
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.58 Score=44.24 Aligned_cols=156 Identities=12% Similarity=0.093 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCChhhHHHHhcccCC-Cch---------HHhHHHHHHHHh----cCChHHHHHHHHhcCC--CChhhHH
Q 042503 138 RIGVVELYTSCGQMDDGMKVFDEMSH-RDV---------IVRNLMIHGFCK----KGDVDKGLYLFREMRE--RSVVSWN 201 (477)
Q Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~---------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~--~~~~~~~ 201 (477)
...++....-.||-+.+++.+....+ +++ ..|...+..++. ..+.+.|.++++.+.+ |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 34455555556666666666655443 111 123333333322 3455666666666665 5555444
Q ss_pred HH-HHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHH-HHHH
Q 042503 202 LM-ISSLGKSGRDSEALRLFHEMRDQA---FELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGN-ALVD 276 (477)
Q Consensus 202 ~l-~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~ 276 (477)
.. .+.+...|+.++|++.|+...... .+.....+--+..++....+|++|...+..+.+.. .-+...|. ....
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHHHH
Confidence 33 344555677777777776544211 01122233344555666677777777777777665 23333332 2233
Q ss_pred HHHhcCCh-------HHHHHHhccCC
Q 042503 277 FYCKCGIL-------DTARNVFKEIP 295 (477)
Q Consensus 277 ~~~~~~~~-------~~a~~~~~~~~ 295 (477)
++...|+. ++|.++|.++.
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44455555 67777777664
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.5 Score=36.74 Aligned_cols=178 Identities=12% Similarity=0.035 Sum_probs=81.6
Q ss_pred HHHHhcCCCchHHHHHHHHHhCCCCCC---cccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhc-
Q 042503 73 KAYSLNGPSEEPVKLFALLKNLGIWPD---EYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSC- 148 (477)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 148 (477)
..-.+.|++++|.+.|+.+...- +-+ ..+...++.++-+.++++.|....++.++.-+.....-|...|.++...
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Confidence 34456677777777777776541 222 2334445555666777777777777777654443334444444444311
Q ss_pred ------CChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 042503 149 ------GQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHE 222 (477)
Q Consensus 149 ------g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 222 (477)
.|...+.+.+..+.+ ++.-|=...=...|...+..+...=...=..+.+.|.+.|.+..|..-+++
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~--------~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKE--------LVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred cCCccccCHHHHHHHHHHHHH--------HHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 111111111111111 000000000000000000000000000112345677888888888888888
Q ss_pred HHHcCCCCCH---HHHHHHHHHhhccCcccchHHHHHHHHH
Q 042503 223 MRDQAFELDE---ATVVAVLPICARLGAVDIGQWIHSYAES 260 (477)
Q Consensus 223 m~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (477)
|++. .+-+. ..+..+..+|...|-.+.|...-+-+..
T Consensus 193 v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 193 VLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 8876 22222 2344455566666666666555444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.25 Score=42.64 Aligned_cols=115 Identities=10% Similarity=0.052 Sum_probs=87.6
Q ss_pred hccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHH----HHHHHHHHcCCh
Q 042503 345 AHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWG----SLLSSCRTHGHV 418 (477)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~----~l~~~~~~~~~~ 418 (477)
.-.|+..+|-..++++.+ ..|.|...+..--.++.-.|+.+.-...+++. ...||.+.|. .+.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345778888888888884 45778777777778899999999988888888 4466664432 334455688999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 419 ELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
++|++..+++.+++|.|.-+....+.++.-.|+..++.++..+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 9999999999999998866666777777777777777766544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.12 Score=43.45 Aligned_cols=110 Identities=13% Similarity=0.040 Sum_probs=79.4
Q ss_pred HHHHhccCC--CCCcchHHHHHHHHHh-----cCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccC-----------
Q 042503 53 ATKIFNQMR--NPSVLLFNSMIKAYSL-----NGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVG----------- 114 (477)
Q Consensus 53 a~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----------- 114 (477)
.++.|..+. +.|-.+|-..+..+.. .+..+=....++.|.+.|+..|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 445566665 3677788888877754 3566667777899999999999999999999875432
Q ss_pred -----CchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCCh-hhHHHHhcccC
Q 042503 115 -----DLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQM-DDGMKVFDEMS 162 (477)
Q Consensus 115 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 162 (477)
+-+-+..++++|...|+.||..+-..|+.++.+.|-. .+..++.-.|.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 2345778888888888888888888888888777653 23334443343
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.22 Score=36.47 Aligned_cols=53 Identities=17% Similarity=0.132 Sum_probs=26.1
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh
Q 042503 309 LAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG 362 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (477)
++..|+.+.|++.|.+.+..- +-+...||.-..++.-.|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344455555555555544431 33444455555555555555555555555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.049 Score=31.71 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=28.2
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
|.++..++.+|.+.|++++|.+++++.++..
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4578899999999999999999999999874
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.052 Score=29.95 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 438 NYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
++..|+.+|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36678888888888888888888754
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.054 Score=29.88 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
+|..|...|.+.|++++|+++|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888889999999988885543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.065 Score=28.95 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
+|..+...|...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666677777777777777777777777663
|
... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.022 Score=44.02 Aligned_cols=129 Identities=10% Similarity=0.100 Sum_probs=85.2
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCch
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEE 83 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (477)
.++..+...+.+.....+++.+.+.+...++...+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45778888999999999999999887677799999999999999988999999885433 333556667777777777
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCC
Q 042503 84 PVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQ 150 (477)
Q Consensus 84 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 150 (477)
+.-++.++....- .+..+...++++.|.+.... .++..+|..++..+...++
T Consensus 89 a~~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 7777766543210 01112333444444433222 2346666666666665554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.80 E-value=3.1 Score=37.93 Aligned_cols=96 Identities=6% Similarity=-0.034 Sum_probs=59.6
Q ss_pred CCchhHhHHHHHHHHhhcccchhHHHhHHHH--HhhcCChhHHHHHhccCCC------------------CCcchHHHHH
Q 042503 13 NTRTHLTQIHAHFLRHKLHQSNLILAHFVSV--CGTLNEIKYATKIFNQMRN------------------PSVLLFNSMI 72 (477)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~------------------~~~~~~~~l~ 72 (477)
++++........+.+.. | ...|-.+..+ +-+.+.+++|.+.+..... +|...=+..+
T Consensus 59 ~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a 135 (549)
T PF07079_consen 59 NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEA 135 (549)
T ss_pred hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHH
Confidence 44555555555555543 2 2234444433 3467889998888765432 2222334567
Q ss_pred HHHHhcCCCchHHHHHHHHHhCCCC----CCcccHHHHHHHhh
Q 042503 73 KAYSLNGPSEEPVKLFALLKNLGIW----PDEYTFAPLLKACL 111 (477)
Q Consensus 73 ~~~~~~~~~~~a~~~~~~~~~~~~~----p~~~~~~~l~~~~~ 111 (477)
..+...|++.+++.+++++...=.+ -+..+|+.++-.+.
T Consensus 136 ~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 136 HSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 7888999999999999998765332 57778887544443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.72 E-value=3.6 Score=38.21 Aligned_cols=141 Identities=9% Similarity=0.044 Sum_probs=63.7
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC------hHHH
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN------LEHY 373 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 373 (477)
..|..++++|..+ ..++-..+|+++.+..+ .|.+.-..|...| ..++.+.+...|.++.. .+-|. ...|
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y-Ekik~sk~a~~f~Ka~y--rfI~~~q~~~i~evW 174 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY-EKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVW 174 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH-HHhchhhHHHHHHHHHH--HhcchhhhhhHHHHH
Confidence 3444555555554 34455555555555431 1222222233322 23555555555555542 11121 1123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM----SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
.-|...- ..+.+...++..+. +...-...+..+-.-|....++++|++++..+++.+..+..+...++.-+.
T Consensus 175 eKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 175 EKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred HHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 2222211 23444444444444 222223334444445556667777777777666666555555555554443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.3 Score=32.79 Aligned_cols=135 Identities=13% Similarity=0.131 Sum_probs=75.5
Q ss_pred HhcCChHHHHHHhccCCCC-CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHH
Q 042503 279 CKCGILDTARNVFKEIPRK-NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
.-.|..++..++..+...+ +..-+|-++--....-+ +..+++.+..-|--.|. ...|+.......+
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~---C~yvv~~LdsIGkiFDi----------s~C~NlKrVi~C~ 79 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAAD---CDYVVETLDSIGKIFDI----------SKCGNLKRVIECY 79 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH-----HHHHHHHHHHHGGGS-G----------GG-S-THHHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhc---hhHHHHHHHHHhhhcCc----------hhhcchHHHHHHH
Confidence 3457777777777765542 33334333332222222 23333333333322221 2334444444444
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 358 ASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
-.+- .+......-+..+..+|+-+.-.+++++. .-++++.....+..+|.+.|+..++.++++++-+.+
T Consensus 80 ~~~n------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 80 AKRN------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3332 23445556677888999999999998887 457888999999999999999999999999987665
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.54 E-value=6.7 Score=40.54 Aligned_cols=153 Identities=13% Similarity=0.092 Sum_probs=92.0
Q ss_pred cCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH----HHhhccCcccchHHH
Q 042503 179 KGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVL----PICARLGAVDIGQWI 254 (477)
Q Consensus 179 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~ 254 (477)
.++++.|+.-+.++. ...|.-.++.--+.|.+.+|+.++ .|+...+..+. ..+...+.++.|.-.
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 345555555554444 223333344444455555555554 56666655544 444566777777777
Q ss_pred HHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeH---HHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 042503 255 HSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSW---NAMISGLAFNGRGELGVELYEQMIAKGVS 331 (477)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 331 (477)
|+..-+. ..-+.+|..+|++++|+.+..++..+-.... ..|..-+...+++-+|-++..+....
T Consensus 962 Ye~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--- 1028 (1265)
T KOG1920|consen 962 YERCGKL----------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--- 1028 (1265)
T ss_pred HHHhccH----------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---
Confidence 7665444 3457788888999999998888776433222 56777778888888888887775532
Q ss_pred CCHHHHHHHHHHhhccccHHHHHHHHHHh
Q 042503 332 PNKATFVGVLTCCAHAGLVEKARELFASM 360 (477)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (477)
| ...+..+++...+++|..+-...
T Consensus 1029 ~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 1 12234455566666666555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.53 E-value=2.3 Score=35.27 Aligned_cols=203 Identities=12% Similarity=0.108 Sum_probs=110.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHH
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFY 278 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (477)
.|..-..+|...+++++|...+.+..+. ..-+...| -.....+.|.-+.+++.+. +.-...++.-...|
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kl---sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKL---SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHH
Confidence 3445556666777777777766555421 01111111 1112233333344444333 44555666777778
Q ss_pred HhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC--CCC---HHHHHHHHHHhhccccHHHH
Q 042503 279 CKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV--SPN---KATFVGVLTCCAHAGLVEKA 353 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~---~~~~~~l~~~~~~~~~~~~a 353 (477)
..+|.++.|-..+++.-+ ....-++++|+++|++...-=. ..+ ...+....+.+.+...+++|
T Consensus 102 ~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred HHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence 888877776655554321 2234456677777766543200 111 22334444556666777766
Q ss_pred HHHHHHhhh----ccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHcCChHHHHH
Q 042503 354 RELFASMTG----LHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM------SIRPNAAIWGSLLSSCRTHGHVELAEH 423 (477)
Q Consensus 354 ~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~p~~~~~~~l~~~~~~~~~~~~a~~ 423 (477)
-..+.+-.. -...+.--..|-..|-.|.-..++..|.+.+++. ....+..+...|+.+| ..||.+++..
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 655544321 0111111234556666777788999999999885 1133456788888776 6678887776
Q ss_pred HH
Q 042503 424 AV 425 (477)
Q Consensus 424 ~~ 425 (477)
++
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 65
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.52 E-value=3.9 Score=37.83 Aligned_cols=243 Identities=9% Similarity=0.016 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC------cccchHHHHHHHHHhCC-ccchhHHHHHHHHHHHhcCChHH-
Q 042503 215 EALRLFHEMRDQAFELDEATVVAVLPICARLG------AVDIGQWIHSYAESSGL-YRKVVSVGNALVDFYCKCGILDT- 286 (477)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~- 286 (477)
....+|++..+. -|+...+...|..|...- .......+++.+...+. .+..+..|..+.-.++......+
T Consensus 300 ~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~ 377 (568)
T KOG2396|consen 300 RCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREV 377 (568)
T ss_pred HHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHH
Confidence 344556555443 455556666666554322 23344445555544432 23444555555555555554433
Q ss_pred HHHHhccCCCCCceeHHHHHHHHHhcC-CchHHH-HHHHHHHHcCCCCCHHHHHHHH-HHhhccccHHHHHHHHHHhhhc
Q 042503 287 ARNVFKEIPRKNVVSWNAMISGLAFNG-RGELGV-ELYEQMIAKGVSPNKATFVGVL-TCCAHAGLVEKARELFASMTGL 363 (477)
Q Consensus 287 a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~-~~~~~m~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~ 363 (477)
|..+..+..+.+...|-.-+....+.. +++--. .++......-..+....|+... .........+.....+..+.
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~-- 455 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI-- 455 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc--
Confidence 344443444556655555554444221 222111 1222222221222233333333 01111111222222222222
Q ss_pred cCCCCChHH-HHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCCCch
Q 042503 364 HSIVPNLEH-YGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCR--THGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 364 ~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
.|+..+ -+.+++.+.+.|-..+|...+... .. +|+...|..++..-. ..-+...+.++|+.++.....+++.
T Consensus 456 ---~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 ---GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDL 532 (568)
T ss_pred ---CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHH
Confidence 344433 456788888999999999999998 22 456677888876532 2234888899999998776688999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 439 YVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 439 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
|..+...-...|..+.+-.++.+..+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 99998888899999988888776654
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.12 Score=39.81 Aligned_cols=87 Identities=10% Similarity=0.129 Sum_probs=60.0
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHH
Q 042503 105 PLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDK 184 (477)
Q Consensus 105 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 184 (477)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .....+++.+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888888888776666777888888888888888888888884433 333455666666666666
Q ss_pred HHHHHHhcCC
Q 042503 185 GLYLFREMRE 194 (477)
Q Consensus 185 a~~~~~~~~~ 194 (477)
|.-++.++..
T Consensus 89 a~~Ly~~~~~ 98 (143)
T PF00637_consen 89 AVYLYSKLGN 98 (143)
T ss_dssp HHHHHHCCTT
T ss_pred HHHHHHHccc
Confidence 6666665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.9 Score=33.63 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
..|..+-.+.|++.+|.+.|..+
T Consensus 171 EALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHH
Confidence 33434444444444444444443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.37 E-value=5.6 Score=38.99 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCc
Q 042503 270 VGNALVDFYCKCGILDTARNVFKEIPRKNV 299 (477)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 299 (477)
....|+..|...+++..|...+-...++++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 345689999999999999999988876544
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.31 E-value=2.8 Score=35.29 Aligned_cols=251 Identities=16% Similarity=0.135 Sum_probs=129.8
Q ss_pred ChHHHHHHHHhcCC--CC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc---CC--CCCHHHHHHHHHHhhccCcc
Q 042503 181 DVDKGLYLFREMRE--RS-----VVSWNLMISSLGKSGRDSEALRLFHEMRDQ---AF--ELDEATVVAVLPICARLGAV 248 (477)
Q Consensus 181 ~~~~a~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~~~~~~~~~l~~~~~~~~~~ 248 (477)
+.++|+.-|++..+ +. -.+.-.++....+.|++++.+..|.+|+.. .+ .-+....++++.-.+.+.+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 44555555555443 11 113344566677777777777777666432 11 22344556666555555555
Q ss_pred cchHHHHHHHHHh----CCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--------C-------CceeHHHHHHHH
Q 042503 249 DIGQWIHSYAESS----GLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--------K-------NVVSWNAMISGL 309 (477)
Q Consensus 249 ~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~-------~~~~~~~l~~~~ 309 (477)
+.-..+++.-.+. ........+-..|...|...+.+..-..+++++.+ . -...|..=|+.|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5444444332221 10011122224677778888887777777776642 0 123566677888
Q ss_pred HhcCCchHHHHHHHHHHHcC-CCCCHHHHHHHHHHh-----hccccHHHHHHHHHHhhhccCC--CCChHH---HHHHHH
Q 042503 310 AFNGRGELGVELYEQMIAKG-VSPNKATFVGVLTCC-----AHAGLVEKARELFASMTGLHSI--VPNLEH---YGCMVD 378 (477)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~~~---~~~l~~ 378 (477)
...++-.+...+|++..... .-|.+.... +++-| .+.|++++|..-|-++.+...- .|...+ |..|..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 88888888888888776532 234444433 34433 4668888876544444322211 232222 444555
Q ss_pred HHHhcCC--HHHHHHHHHhc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 379 VLGRSGC--VREAYDLIRSM---SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 379 ~~~~~g~--~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
.+.+.|- ++. ++. ...|.......++.+| +.++..+-+++++.-.+.--++|.+
T Consensus 281 MLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aY-Q~NdI~eFE~Il~~~~~~IM~DpFI 339 (440)
T KOG1464|consen 281 MLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAY-QNNDIIEFERILKSNRSNIMDDPFI 339 (440)
T ss_pred HHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHH-hcccHHHHHHHHHhhhccccccHHH
Confidence 5555541 110 111 2234445667777776 4456666556555444333333433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.22 E-value=2 Score=33.24 Aligned_cols=87 Identities=17% Similarity=0.155 Sum_probs=47.2
Q ss_pred hccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHH
Q 042503 345 AHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEH 423 (477)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~ 423 (477)
...++.+.+..++..+.-...-.|...++. ...+...|++.+|+++|+++ ...|....-..|+..|.....-..=..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHH
Confidence 456677777777777764322222233333 33466778888888888887 334444444455544444333333333
Q ss_pred HHHHHHhcCC
Q 042503 424 AVKELINLEP 433 (477)
Q Consensus 424 ~~~~~~~~~p 433 (477)
.-+++.+.++
T Consensus 99 ~A~evle~~~ 108 (160)
T PF09613_consen 99 YADEVLESGA 108 (160)
T ss_pred HHHHHHhcCC
Confidence 3444444444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.45 Score=36.01 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=47.6
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHhc-CCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 371 EHYGCMVDVL---GRSGCVREAYDLIRSM-SIRPNAAIWGS-LLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 371 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
.+.+.|+... ...++++++..+++.+ -.+|+..-... -...+...|++.+|.+++++..+-.+..+..-..++.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 3444444432 3466777777777777 33444322221 12345677777777777777777666555555556666
Q ss_pred HHhcCCc
Q 042503 446 YAEGGRW 452 (477)
Q Consensus 446 ~~~~g~~ 452 (477)
+.-.|+.
T Consensus 88 L~al~Dp 94 (153)
T TIGR02561 88 LNAKGDA 94 (153)
T ss_pred HHhcCCh
Confidence 6666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.11 Score=44.82 Aligned_cols=97 Identities=11% Similarity=0.032 Sum_probs=69.8
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHHcCC
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIR-PNAAIWGSLLSSCRTHGH 417 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~ 417 (477)
-...|.+.|.+++|++.|...... .+-+..++..-..+|.+..++..|..-.... .+. .-...|..-+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 356788999999999999887732 2337788888888999999888887766665 211 112344444555556678
Q ss_pred hHHHHHHHHHHHhcCCCCCch
Q 042503 418 VELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~ 438 (477)
..+|.+-++.++++.|.+...
T Consensus 181 ~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHH
Confidence 889999999999999985543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.13 Score=27.40 Aligned_cols=28 Identities=21% Similarity=0.126 Sum_probs=16.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
.++.++.+.|++++|.+.|+++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555566666666666666655554
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.79 E-value=5.1 Score=39.58 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhcc
Q 042503 70 SMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGV 113 (477)
Q Consensus 70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 113 (477)
.+|-.|.|.|++++|.++.+...+. .......+...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4555677888888888887555543 345556677777777654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.094 Score=28.43 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=24.8
Q ss_pred HHHHHHhCCccchhHHHHHHHHHHHhcCChHHHH
Q 042503 255 HSYAESSGLYRKVVSVGNALVDFYCKCGILDTAR 288 (477)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 288 (477)
++++++.. |.++.+|..+...|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34555555 888888888888888888888875
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.59 Score=36.07 Aligned_cols=97 Identities=20% Similarity=0.081 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHH---HhcCCHHHHHHHHHhc-CCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 042503 369 NLEHYGCMVDVL---GRSGCVREAYDLIRSM-SIRPNAAIWGSL-LSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLS 443 (477)
Q Consensus 369 ~~~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (477)
+..+.+.|+... .+.++.+++..++..+ -.+|.......+ ...+...|++.+|.++++.+.+..|..+..-..++
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 334555555543 4678999999999888 556665443322 34567899999999999998888887777777777
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 042503 444 NIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.++...|+.+= ..+-+++.+.+
T Consensus 86 ~CL~~~~D~~W-r~~A~evle~~ 107 (160)
T PF09613_consen 86 LCLYALGDPSW-RRYADEVLESG 107 (160)
T ss_pred HHHHHcCChHH-HHHHHHHHhcC
Confidence 77777776432 22234455554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=4.6 Score=35.21 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=13.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
..+.++...|+. +|...+.++.+.+|
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 344455555553 45555555555444
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.54 E-value=6 Score=36.43 Aligned_cols=121 Identities=7% Similarity=-0.003 Sum_probs=74.7
Q ss_pred cCCCchhHh-HHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHH
Q 042503 11 GRNTRTHLT-QIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVK 86 (477)
Q Consensus 11 ~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 86 (477)
..|++..|- +++..+......| .............|+++.+...+..... ....+...+++...+.|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p--~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDP--VLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCc--hhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 456665554 3444444443333 3333334455677888888888776544 556677888888888899999998
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCc
Q 042503 87 LFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERF 134 (477)
Q Consensus 87 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 134 (477)
+-+-|....+. ++..........-..|-++++.-.++++...+++.+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 88888765543 333333222223345667777777777766544433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.35 E-value=4.2 Score=35.75 Aligned_cols=147 Identities=10% Similarity=0.092 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc--c----ccHHHHHHHHHHhhhccCCCCC--hHHHHHHHHHHHhcCCHH
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAH--A----GLVEKARELFASMTGLHSIVPN--LEHYGCMVDVLGRSGCVR 387 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 387 (477)
++...+++.|.+.|+.-+..+|.+....... . .....|..+++.|++.+.+-.+ ..++..++.. ..++++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4566788888888888887776553333222 2 2356788899999876554322 3333333322 333333
Q ss_pred ----HHHHHHHhc---CCCCCH--HHHHHHHHHHHHcCC--hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch-HH
Q 042503 388 ----EAYDLIRSM---SIRPNA--AIWGSLLSSCRTHGH--VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWD-DA 455 (477)
Q Consensus 388 ----~A~~~~~~~---~~~p~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~A 455 (477)
.+...|+.+ +...+. .....++..+....+ ..++.++++.+.+.+..-...+...+.+++-.+..+ +.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~ 236 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKI 236 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHH
Confidence 334444444 443332 233333332222222 346677777777666322333344444444444333 55
Q ss_pred HHHHHHHHh
Q 042503 456 ETLRMWMRE 464 (477)
Q Consensus 456 ~~~~~~~~~ 464 (477)
..-+.++.+
T Consensus 237 ~~~i~ev~~ 245 (297)
T PF13170_consen 237 VEEIKEVID 245 (297)
T ss_pred HHHHHHHHH
Confidence 555555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.26 E-value=6.3 Score=35.82 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 399 RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE----PWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 399 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.....+|..++..+.+.|.++.|...+.++...+ +..+......++.+...|+..+|...++..++.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445788999999999999999999999998765 224778888899999999999999999998873
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=93.26 E-value=9.5 Score=37.86 Aligned_cols=185 Identities=10% Similarity=-0.063 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCC--Cc-eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 271 GNALVDFYCKCGILDTARNVFKEIPRK--NV-VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
...-+......++++.+...+..|... +. .-.-=+..++...|+.++|..+|+.+.. ..+ .|..+... +.
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~--~L 387 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQ--RL 387 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHH--Hc
Confidence 344445555777777777777776531 11 1122234455556777777777777632 112 22222211 11
Q ss_pred ccHHHHHHHHHHhhhccCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHH
Q 042503 348 GLVEKARELFASMTGLHSIVPNL-----EHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 422 (477)
|..-. +. ....++.. ..--.-+..+...|....|...+..+....+......+.....+.|.++.++
T Consensus 388 g~~~~-------~~-~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai 459 (644)
T PRK11619 388 GEEYP-------LK-IDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSV 459 (644)
T ss_pred CCCCC-------CC-CCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHH
Confidence 21100 00 00000000 0011123456677888888888877722355566666666677888888887
Q ss_pred HHHHHHHhcC---CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 042503 423 HAVKELINLE---PWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKS 470 (477)
Q Consensus 423 ~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 470 (477)
....+....+ -.-|..|...+..+.+.-.++.++-+----.|.+..|.
T Consensus 460 ~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 460 QATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 7766543321 01133466666666665566665533223334444443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.8 Score=34.60 Aligned_cols=54 Identities=11% Similarity=-0.023 Sum_probs=23.0
Q ss_pred HHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 379 VLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
.....|.+++|+..++.. +-.-.......-+.++...|+-++|+..|+++++.+
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 344445555555555443 111111222233344445555555555555554444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.18 E-value=3.7 Score=32.90 Aligned_cols=90 Identities=9% Similarity=-0.028 Sum_probs=57.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCCHHHH-----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 376 MVDVLGRSGCVREAYDLIRSMSIRPNAAIW-----GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
+...+...|++++|...++..--.|....+ ..|.+.....|.+++|...++...+.+- .+.....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 345667777777777777765223333333 2344556677888888877776544332 1334556677788888
Q ss_pred CchHHHHHHHHHHhCC
Q 042503 451 RWDDAETLRMWMRENN 466 (477)
Q Consensus 451 ~~~~A~~~~~~~~~~~ 466 (477)
+.++|+.-|++.++.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888888887775
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.15 Score=27.46 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
..+..++.++...|++++|++.+++.++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.6 Score=39.95 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=47.1
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHHcCChHHH
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-S-IRPNAAIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a 421 (477)
+...|+++.+.+.+....+ -+.....+...+++...+.|++++|...-.-| + --.+++............|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 4455666666666555442 22334445555666666666666666666555 1 122333333333334445566666
Q ss_pred HHHHHHHHhcCCCC
Q 042503 422 EHAVKELINLEPWN 435 (477)
Q Consensus 422 ~~~~~~~~~~~p~~ 435 (477)
...|++...++|+.
T Consensus 411 ~~~wk~~~~~~~~~ 424 (831)
T PRK15180 411 YHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccCChh
Confidence 66666666666443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=5.6 Score=34.74 Aligned_cols=60 Identities=8% Similarity=-0.044 Sum_probs=26.7
Q ss_pred cchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCc----hHHHHHHHH
Q 042503 32 QSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSE----EPVKLFALL 91 (477)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~a~~~~~~~ 91 (477)
++..+....+..+...|..+....+..-..++|...=...+.++.+.|+.. ++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 344444445555555554333333333223344444444455555555432 344445444
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.5 Score=38.26 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=32.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 376 MVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
-+..+.+.+.+.+|+...++- +-+|.. ..-..++..++-.|++++|..-++-+-++.|.+
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344555556666666655554 333332 334445555566666666666666665555543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.48 E-value=2.9 Score=33.49 Aligned_cols=60 Identities=12% Similarity=0.097 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPN--KATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
+..+...|.+.|+.+.|.+.|.++.+....+. ...+..+++.....+++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44455555666666666666666555433332 2234445555555566666665555554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.18 Score=25.25 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=17.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRM 460 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~ 460 (477)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345667777777777777777664
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.28 E-value=1.4 Score=38.72 Aligned_cols=128 Identities=12% Similarity=0.108 Sum_probs=80.3
Q ss_pred chhHhHHHHHHHHhhcccchhHHHhHHHHHhh--c----CChhHHHHHhccCCC-------CCcchHHHHHHHHHhcCCC
Q 042503 15 RTHLTQIHAHFLRHKLHQSNLILAHFVSVCGT--L----NEIKYATKIFNQMRN-------PSVLLFNSMIKAYSLNGPS 81 (477)
Q Consensus 15 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~ 81 (477)
+++...+++.+.+.|+..+..++-+..-.... . .....|.++|+.|++ ++-..+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788999999998887776664444433 2 234568888888876 344455555443 33333
Q ss_pred ----chHHHHHHHHHhCCCCCCcc--cHHHHHHHhhccCC--chhHHHHHHHHHHhcccCcchHHHHHHHH
Q 042503 82 ----EEPVKLFALLKNLGIWPDEY--TFAPLLKACLGVGD--LRVGQCVHGEIIRSGFERFGSIRIGVVEL 144 (477)
Q Consensus 82 ----~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (477)
+.+..+|+.+.+.|...+.. ..+.++..+....+ ...+.++++.+.+.|.++....|..+.-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 55677888888877665443 33333333322222 34677888888888888877777655543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.24 Score=26.70 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+|..++.+|...|++++|+..+++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 478899999999999999999999998753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.7 Score=31.96 Aligned_cols=52 Identities=4% Similarity=-0.126 Sum_probs=24.4
Q ss_pred hcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC
Q 042503 10 HGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN 62 (477)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 62 (477)
...++++++..+++.+.-..+ ..+..-.--...+...|+|++|..+|+.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRP-NLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCC-CccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 345555555555555554431 1122222223334455556666666555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=92.19 E-value=2.9 Score=29.19 Aligned_cols=60 Identities=15% Similarity=0.196 Sum_probs=34.6
Q ss_pred HHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 042503 174 HGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVV 236 (477)
Q Consensus 174 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 236 (477)
..+...|++++|..+.+....||...|-+|.. .+.|-.++....+..|...| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34555666666666666666666666655443 35566666666666666665 44444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.16 E-value=1.6 Score=34.96 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc---CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM---SIRP--NAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
.+..+...|.+.|+.++|.+.|.++ ...| -...+..+++.....+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3444555555555555555555555 1111 123444455555555555555555555543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.00 E-value=6.2 Score=32.66 Aligned_cols=129 Identities=12% Similarity=-0.014 Sum_probs=68.4
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhhcc-ccHHHHHHHHHHhhhccCC-CCChH---HHHHHHHH
Q 042503 310 AFNGRGELGVELYEQMIAKGVSPN-----KATFVGVLTCCAHA-GLVEKARELFASMTGLHSI-VPNLE---HYGCMVDV 379 (477)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~---~~~~l~~~ 379 (477)
.+.+++++|...++..++.-.... ......+...|... .++++|+..|+..-+-+.. ..+.. .+.-...-
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 345588888888877665311111 11122344555443 6777888888776532111 11111 12222233
Q ss_pred HHhcCCHHHHHHHHHhc---CCCCCHHHH------HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 380 LGRSGCVREAYDLIRSM---SIRPNAAIW------GSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~---~~~p~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
-...+++.+|+++|++. ....+..-| ..-+-++.-..|.-.+.+.+++..+.+|.-.++
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 34667888888888887 222221111 222222333467777888888888888865444
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.2 Score=36.90 Aligned_cols=57 Identities=12% Similarity=-0.066 Sum_probs=33.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 409 LSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
-.++...|++-++++.-.++++..|.+..+|..-+.+.+..=+.++|..-+.++++.
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 344455566666666666666666666666666666666555666666655555554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.35 Score=28.01 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 440 VLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 440 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..|+.+|...|+.+.|.++++++++.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468889999999999999999998765
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.86 Score=37.53 Aligned_cols=86 Identities=13% Similarity=0.021 Sum_probs=47.3
Q ss_pred HhhccccHHHHHHHHHHhhhccCCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHH-HHHHHHHHHHHcCChH
Q 042503 343 CCAHAGLVEKARELFASMTGLHSIVPNL-EHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAA-IWGSLLSSCRTHGHVE 419 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~ 419 (477)
.|.....++.|+..+.+... +.|+. .-|+.=+.++.+..+++.+..--.+. .+.||.. ....+..+......++
T Consensus 19 k~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred cccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 35555566666666655552 24444 33444555666666666665555444 5555543 3333444555666666
Q ss_pred HHHHHHHHHHhc
Q 042503 420 LAEHAVKELINL 431 (477)
Q Consensus 420 ~a~~~~~~~~~~ 431 (477)
+|+..+.++.++
T Consensus 96 eaI~~Lqra~sl 107 (284)
T KOG4642|consen 96 EAIKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHHHH
Confidence 676666666443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=1.2 Score=38.28 Aligned_cols=63 Identities=19% Similarity=0.123 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..+.+-.+|.+.++++.|.++.+.++...|+++.-+..-+.+|.+.|.+..|..-++..++..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345566677888888888888888888888888888888888888888888888888877663
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.50 E-value=2.2 Score=36.67 Aligned_cols=58 Identities=14% Similarity=0.253 Sum_probs=25.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHh
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASM 360 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (477)
+..++..+...|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3334444444444444444444444443 334444444444444444444444444443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.49 E-value=17 Score=36.61 Aligned_cols=188 Identities=14% Similarity=0.113 Sum_probs=96.1
Q ss_pred HhcCChHHHHHHhccCC----CCCce-------eHHHHHH-HHHhcCCchHHHHHHHHHHHcC----CCCCHHHHHHHHH
Q 042503 279 CKCGILDTARNVFKEIP----RKNVV-------SWNAMIS-GLAFNGRGELGVELYEQMIAKG----VSPNKATFVGVLT 342 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~----~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~l~~ 342 (477)
....++++|..++.++. .|+.. .|+.+-. .....|++++|.++.+.....= ..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567777777666543 22221 3444332 2335678888888877766541 1233445556666
Q ss_pred HhhccccHHHHHHHHHHhhhccCCCCChHH---HHHH--HHHHHhcCCHHHH--HHHHHhc-----CCCCC----HHHHH
Q 042503 343 CCAHAGLVEKARELFASMTGLHSIVPNLEH---YGCM--VDVLGRSGCVREA--YDLIRSM-----SIRPN----AAIWG 406 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~g~~~~A--~~~~~~~-----~~~p~----~~~~~ 406 (477)
+..-.|++++|..+.....+ ..-.-+... |..+ ...+..+|+...+ ...|... ..+|- ..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 66677888888877776653 111122222 2222 2234456633222 2223222 22222 23444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhc----CCCCCc---hHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINL----EPWNSG---NYVLLSNIYAEGGRWDDAETLRMWMRENNVKKS 470 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 470 (477)
.++.++.+ .+.+..-.....+. .|.... .+..|+..+...|+.++|...++++......+.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 55555554 33333333333322 222211 223677778888888888888888876554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.47 E-value=6.8 Score=32.04 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=105.6
Q ss_pred ccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCce-eHHHHHH--HHHhcCCchHHHH
Q 042503 244 RLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVV-SWNAMIS--GLAFNGRGELGVE 320 (477)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~a~~ 320 (477)
..|-++.|.--|.+..... |.-+.+++-+.-.+...|+++.|.+.|+...+-|+. -|..+=+ ++.--|++.-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~--P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC--CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 3344445555555555555 888899999999999999999999999998876553 2332222 2334578888887
Q ss_pred HHHHHHHcCCCCCHH--HHHHHHHHhhccccHHHHHHHH-HHhhhccCCCCChHHHHHH-HHHHHhcCCHHHHHHHHHhc
Q 042503 321 LYEQMIAKGVSPNKA--TFVGVLTCCAHAGLVEKARELF-ASMTGLHSIVPNLEHYGCM-VDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 321 ~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~ 396 (477)
-+...-+.. +.|+. .|.-+. ...-++.+|..-+ ++.. ..|..-|... +..|...=..+.+.+-....
T Consensus 155 d~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~ 225 (297)
T COG4785 155 DLLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-----KSDKEQWGWNIVEFYLGKISEETLMERLKAD 225 (297)
T ss_pred HHHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-----hccHhhhhHHHHHHHHhhccHHHHHHHHHhh
Confidence 777766654 32322 222222 2334566665444 3333 2333333332 23333222233333322222
Q ss_pred CCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 397 SIR------PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 397 ~~~------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
... .-..||.-+..-+...|+.++|..+|+-++..+.-
T Consensus 226 a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 226 ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 100 11357777888888999999999999999877643
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.41 E-value=2.9 Score=33.53 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=24.2
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 411 SCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
++.+.+..+.|+.-..++++++|....+...-+.+|.+..++++|+.-++++.+
T Consensus 143 a~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E 196 (271)
T KOG4234|consen 143 ALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILE 196 (271)
T ss_pred HHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.29 E-value=2.7 Score=33.22 Aligned_cols=73 Identities=18% Similarity=0.181 Sum_probs=39.4
Q ss_pred HHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 042503 387 REAYDLIRSM-SIRPNA-AIWGSLLSSCRTHG-----------HVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWD 453 (477)
Q Consensus 387 ~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 453 (477)
++|+.-|++. .+.|+. .++..++.++...+ .+++|.+.|+++++.+|.+. .|..-+.+. +
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~ 124 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMA------A 124 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------H
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------H
Confidence 3334444444 556665 56777777765443 25667777777778888644 444333332 3
Q ss_pred HHHHHHHHHHhCC
Q 042503 454 DAETLRMWMRENN 466 (477)
Q Consensus 454 ~A~~~~~~~~~~~ 466 (477)
+|-++..++.+.+
T Consensus 125 kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 KAPELHMEIHKQG 137 (186)
T ss_dssp THHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHH
Confidence 4666666665554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=91.22 E-value=1.9 Score=35.75 Aligned_cols=66 Identities=18% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCChH-------HHHHHHHHHHhcC--CCC----CchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 042503 404 IWGSLLSSCRTHGHVE-------LAEHAVKELINLE--PWN----SGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKK 469 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (477)
.+..+.+.|...|+.+ .|.+.|+++.+.. |.. ......++....+.|+.++|.+++.+++..+-.+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 4555666666667644 4555555555443 222 3466678888889999999999999998775433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.17 E-value=0.26 Score=26.17 Aligned_cols=28 Identities=18% Similarity=0.200 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 438 NYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 438 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++..++.++.+.|++++|.+.++++++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4678899999999999999999999875
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.7 Score=36.32 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 418 VELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
+++|+.-|++++.++|+..+++..++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 556777788888999999999999999987654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.48 Score=26.86 Aligned_cols=28 Identities=29% Similarity=0.308 Sum_probs=19.5
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.+++.++.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566777777777777777777777654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.79 E-value=1.2 Score=38.84 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=63.7
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC
Q 042503 305 MISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG 384 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 384 (477)
-.+-|.++|.+++|+..|....... +-|.+++..-..+|.+...+..|+.-........ ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 4667889999999999999887653 4488888888889999999998887777666211 111223333333334445
Q ss_pred CHHHHHHHHHhc-CCCCCH
Q 042503 385 CVREAYDLIRSM-SIRPNA 402 (477)
Q Consensus 385 ~~~~A~~~~~~~-~~~p~~ 402 (477)
...+|.+-++.. .+.|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 566666555555 556664
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.75 E-value=6.9 Score=30.80 Aligned_cols=133 Identities=12% Similarity=0.085 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcC--ChHHHHHHHHhcCCCCh
Q 042503 120 QCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKG--DVDKGLYLFREMRERSV 197 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~ 197 (477)
.+.++.+.+.+++|+...+..+++.+.+.|++.....++.--.=+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 3455666678899999999999999999999998888877654455444433332222211 1233445554443
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHH
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAES 260 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (477)
..+..++..+...|++-+|+++.+...... .++ ...++.+..+.+|...-..+++....
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~---~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVP---ARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCC---HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 245667788889999999999887753221 112 23345555555554444444444433
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.72 E-value=9.7 Score=37.15 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh-cCCchHHHHHHHHHHhCCC
Q 042503 417 HVELAEHAVKELINLEPWNSGNYVLLSNIYAE-GGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~ 467 (477)
+...|..+++++.+.++ +.+...+...+.- .++++.+.-.+..+.+.|.
T Consensus 379 ~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAELGY 428 (552)
T ss_pred CHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHhhh
Confidence 55566666666665552 2222222222221 1555555555555554443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.68 E-value=19 Score=35.68 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 042503 201 NLMISSLGKSGRDSEALRLFHEMR 224 (477)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~m~ 224 (477)
..|+..|...+++..|+.++-..+
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhcc
Confidence 336777777777777777775554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.62 E-value=24 Score=36.85 Aligned_cols=142 Identities=13% Similarity=0.120 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHH
Q 042503 138 RIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEAL 217 (477)
Q Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 217 (477)
|...++.--+.|-+.+|+.++.-=.+.-...|.+....+...+.+++|.-.|+...+ ...-+.+|...|+|.+|+
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l 985 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREAL 985 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHH
Confidence 333344444555555555555433222233444444455556666666666655443 122345566677777777
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC
Q 042503 218 RLFHEMRDQAFELDEAT--VVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP 295 (477)
Q Consensus 218 ~~~~~m~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (477)
.+-.++... -|... -..|...+...++.-+|-++........ ...+..|++...+++|..+.....
T Consensus 986 ~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~---------~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 986 SLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP---------EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH---------HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 776655321 11111 1345555566666666666655544332 334555666677777777665554
Q ss_pred C
Q 042503 296 R 296 (477)
Q Consensus 296 ~ 296 (477)
+
T Consensus 1054 ~ 1054 (1265)
T KOG1920|consen 1054 R 1054 (1265)
T ss_pred c
Confidence 3
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.6 Score=25.01 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=26.0
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.+|..++..|...|++++|.+.+++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999998764
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.81 Score=25.87 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 402 AAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
..+++.+...|...|++++|+.+++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788888999999999999999888753
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.83 Score=23.48 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 405 WGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 405 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
+..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44455555556666666666666655554
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=89.75 E-value=1.1 Score=27.32 Aligned_cols=34 Identities=24% Similarity=0.167 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (477)
-.+.-++.+.|++++|.+..+.+++.+|++..+.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3456678899999999999999999999876543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.64 E-value=13 Score=32.11 Aligned_cols=60 Identities=15% Similarity=0.053 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
++......|...|.+.+|.++-++++.++|.+...+..++..|...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 455566789999999999999999999999999999999999999999878877777663
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.61 E-value=2.3 Score=29.77 Aligned_cols=60 Identities=10% Similarity=0.112 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
+..+-+..+....+.|++......+++|.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 455566666667788899999999999999999999999999888655433 336665553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.37 E-value=1.3 Score=38.10 Aligned_cols=98 Identities=22% Similarity=0.361 Sum_probs=56.2
Q ss_pred cccchhHHHhHHHHHhhcCChhHHHHHhccCCC-CC------cchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCccc
Q 042503 30 LHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN-PS------VLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYT 102 (477)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 102 (477)
.+.+..+...++..-....+++.++..+-+++. |+ ...+ ..++.+ -.-++++++.++..=++.|+-||..+
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 334444455555555555666666666555543 21 1111 122222 23355667777666667777777777
Q ss_pred HHHHHHHhhccCCchhHHHHHHHHHHh
Q 042503 103 FAPLLKACLGVGDLRVGQCVHGEIIRS 129 (477)
Q Consensus 103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 129 (477)
+..++..+.+.+++..|.++...++..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777777666666554
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=89.30 E-value=1.4 Score=30.46 Aligned_cols=62 Identities=18% Similarity=0.048 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCch-HHHHHHHH
Q 042503 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN--SGNYVLLSNIYAEGGRWD-DAETLRMW 461 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~-~A~~~~~~ 461 (477)
.|...-..+...+...|+++.|.+.+-++++.++.. ...-..|+.++.-.|.-+ -+.++-++
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRk 84 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRK 84 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 345666777777888888888888888887776543 556677777777777644 33333333
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=89.13 E-value=0.86 Score=23.93 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=25.6
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 416 GHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
|+.+.+..+|++++...|.++..|..++...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678899999999999898888888877653
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.06 E-value=2.6 Score=29.18 Aligned_cols=60 Identities=10% Similarity=0.147 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
++.+-++.+....+.|++....+.+++|.+.+++..|.++|+.++.+.+. +...|..+++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 45566667777778888888888899999999999999999888743332 3445655543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.80 E-value=3.5 Score=35.65 Aligned_cols=96 Identities=7% Similarity=-0.012 Sum_probs=60.1
Q ss_pred CceeHHHHHHHHHhcCCchHHHHHHHHHHHcC---CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHH
Q 042503 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKG---VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYG 374 (477)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 374 (477)
...+...++..-....+++.++.++-++.... ..|+... ...++.| -.-++++++.++..-. .+|+-||..++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irll-lky~pq~~i~~l~npI-qYGiF~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLL-LKYDPQKAIYTLVNPI-QYGIFPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHH-HccChHHHHHHHhCcc-hhccccchhhHH
Confidence 34455555555455667777777777665431 1122111 1222322 2345667777777666 588888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc
Q 042503 375 CMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
.+++.+.+.+++.+|.++...|
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHH
Confidence 8888888888888888777666
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.97 E-value=6.3 Score=31.92 Aligned_cols=71 Identities=17% Similarity=0.126 Sum_probs=48.5
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCCCchHHHHHHHHHhcCCchHHH
Q 042503 385 CVREAYDLIRSM---SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE----PWNSGNYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 385 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~ 456 (477)
.-+.|.+.|-.+ +.--++.....++ .|....|.++++.++-+++++. ..|++.+..|+..|.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 345666666666 2223444444444 4445778899999999888765 235788999999999999988874
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.76 E-value=5.3 Score=37.94 Aligned_cols=100 Identities=21% Similarity=0.155 Sum_probs=46.6
Q ss_pred hcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHH
Q 042503 280 KCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFAS 359 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 359 (477)
+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 344555554444332 2344466666666666666666665555432 22344444444544433333333
Q ss_pred hhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 042503 360 MTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMS 397 (477)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (477)
.. ..|. .| .-..+|...|+++++.+++.+-+
T Consensus 718 ~~-~~g~-~N-----~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 718 AK-KQGK-NN-----LAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HH-hhcc-cc-----hHHHHHHHcCCHHHHHHHHHhcC
Confidence 33 2221 11 12234455566666666665553
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=87.61 E-value=22 Score=32.43 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=48.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHHHh
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEPW-NSGNYVLLSNIYA-EGGRWDDAETLRMWMRE 464 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 464 (477)
.+..+.+.|-+..|.++.+-+..++|. ||-....+++.|+ ++++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 356678899999999999999999998 8888888888886 78888888888887655
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=87.19 E-value=8.2 Score=27.05 Aligned_cols=88 Identities=13% Similarity=0.037 Sum_probs=60.0
Q ss_pred CCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHH
Q 042503 13 NTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLK 92 (477)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 92 (477)
...++|.-|-+.+...+-. ...+.-.-+..+...|++++|..+.+....||...|-+|-.. +.|-.+.+..-+..|.
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 3457788888888777632 333333445667788999999999999888999888877554 5566666666666777
Q ss_pred hCCCCCCcccHH
Q 042503 93 NLGIWPDEYTFA 104 (477)
Q Consensus 93 ~~~~~p~~~~~~ 104 (477)
.+| .|...+|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 666 44444443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.16 E-value=27 Score=32.89 Aligned_cols=158 Identities=11% Similarity=0.115 Sum_probs=81.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHH
Q 042503 196 SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALV 275 (477)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 275 (477)
|....-+++..+.....+.-+..+..+|..-| .+...|..++.+|... ..+.-..+++++.+... .+...-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHH
Confidence 33445556666777777777777777777653 4555666677777666 55556666676666663 3333334555
Q ss_pred HHHHhcCChHHHHHHhccCCCC------Cc---eeHHHHHHHHHhcCCchHHHHHHHHHHHc-CCCCCHHHHHHHHHHhh
Q 042503 276 DFYCKCGILDTARNVFKEIPRK------NV---VSWNAMISGLAFNGRGELGVELYEQMIAK-GVSPNKATFVGVLTCCA 345 (477)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~ 345 (477)
..|-+ ++...+...|.++... +. ..|..+... -..+.+....+..++... |...-...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55544 5555565555554321 11 123222221 123344444444444332 22222233333334455
Q ss_pred ccccHHHHHHHHHHhh
Q 042503 346 HAGLVEKARELFASMT 361 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~ 361 (477)
...++++|++++..+.
T Consensus 217 ~~eN~~eai~Ilk~il 232 (711)
T COG1747 217 ENENWTEAIRILKHIL 232 (711)
T ss_pred cccCHHHHHHHHHHHh
Confidence 5566666666666555
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.14 E-value=6.4 Score=27.69 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=36.6
Q ss_pred HHHHHHHhc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 388 EAYDLIRSM---SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 388 ~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
+..+-++.+ ..-|++.+..+.+.+|.+.+|+..|.++++-+...-.+....|-.++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 334444444 667888888999999999999999999998887655444445655543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=86.99 E-value=7.6 Score=31.48 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHcCChHHH
Q 042503 351 EKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM------SIRPNAAIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~p~~~~~~~l~~~~~~~~~~~~a 421 (477)
+.|.+.|-.+.. .+.-.++.....|...|. ..+.++++.++.+. +..+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 445555555542 333344444444444443 44566666665554 2255666666666666666666655
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=86.95 E-value=35 Score=33.99 Aligned_cols=175 Identities=12% Similarity=0.074 Sum_probs=91.4
Q ss_pred hHhHHHHHHHH-hhcccc--hhHHHhHHHHHh-hcCChhHHHHHhccCCC----CCc-----chHHHHHHHHHhcCCCch
Q 042503 17 HLTQIHAHFLR-HKLHQS--NLILAHFVSVCG-TLNEIKYATKIFNQMRN----PSV-----LLFNSMIKAYSLNGPSEE 83 (477)
Q Consensus 17 ~a~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~----~~~-----~~~~~l~~~~~~~~~~~~ 83 (477)
.|...++.+.+ ..++|. ..++..+...+. ...+++.|+..+++... ++. .+...++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 34555566663 333333 335666677666 56788999998886543 221 12234555665555555
Q ss_pred HHHHHHHHHhCCCCCCcc----cHHHH-HHHhhccCCchhHHHHHHHHHHhc---ccCcchHHHHHHHHHH--hcCChhh
Q 042503 84 PVKLFALLKNLGIWPDEY----TFAPL-LKACLGVGDLRVGQCVHGEIIRSG---FERFGSIRIGVVELYT--SCGQMDD 153 (477)
Q Consensus 84 a~~~~~~~~~~~~~p~~~----~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~ 153 (477)
|...+++..+.--..... .|..+ +..+...+++..|.+.++.+.... ..|...++..++.+.. +.+..++
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d 197 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD 197 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence 888888766542111112 22222 222223378888888888877643 2333444444444433 3454555
Q ss_pred HHHHhcccCC-------------CchHHhHHHHHHH--HhcCChHHHHHHHHhc
Q 042503 154 GMKVFDEMSH-------------RDVIVRNLMIHGF--CKKGDVDKGLYLFREM 192 (477)
Q Consensus 154 A~~~~~~~~~-------------~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 192 (477)
+.+.++.+.. |...+|..++..+ ...|+++.+.+.++++
T Consensus 198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555554411 2344555554433 3456655555554444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.89 E-value=5.9 Score=27.53 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=36.9
Q ss_pred HHHHHHHhc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 042503 388 EAYDLIRSM---SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLS 443 (477)
Q Consensus 388 ~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (477)
++.+-++.+ ..-|++.+..+.+++|.+.+|+..|.++++-....-..+...|-.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 334444444 66788888888888888888888888888877644433333444443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.86 E-value=63 Score=36.90 Aligned_cols=152 Identities=10% Similarity=0.067 Sum_probs=85.0
Q ss_pred HHHhhcCChhHHHHHhccC----CCC--CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCC
Q 042503 42 SVCGTLNEIKYATKIFNQM----RNP--SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGD 115 (477)
Q Consensus 42 ~~~~~~~~~~~a~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 115 (477)
.+-.+++.+..|.-.++.- .+. ...-|-.+...|..-++++...-+...-. .+...+.. +......|+
T Consensus 1391 ~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~q-il~~e~~g~ 1464 (2382)
T KOG0890|consen 1391 RASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQ-ILEHEASGN 1464 (2382)
T ss_pred HHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHH-HHHHHhhcc
Confidence 3445566677777777763 111 12234444447777788877766665311 12222232 333456778
Q ss_pred chhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHH-HHHHHhcCChHHHHHHHHh
Q 042503 116 LRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLM-IHGFCKKGDVDKGLYLFRE 191 (477)
Q Consensus 116 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l-~~~~~~~~~~~~a~~~~~~ 191 (477)
+..|...|+.+.+.+++ ....++.++......|.++.+....+.... +....++.+ +.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 88888888887775432 355666666666677777777776666554 222233322 333456677776666655
Q ss_pred cCCCChhhHHHH
Q 042503 192 MRERSVVSWNLM 203 (477)
Q Consensus 192 ~~~~~~~~~~~l 203 (477)
..+..+|...
T Consensus 1543 --~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 --DRNIEYWSVE 1552 (2382)
T ss_pred --cccccchhHH
Confidence 3444444443
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.02 E-value=30 Score=32.33 Aligned_cols=150 Identities=13% Similarity=0.026 Sum_probs=82.7
Q ss_pred hcCCchHHHHHHHHHHHc-CCCCCH--H------HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChH--HHHHHHHH
Q 042503 311 FNGRGELGVELYEQMIAK-GVSPNK--A------TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLE--HYGCMVDV 379 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~-~~~~~~--~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~ 379 (477)
-.|++.+|++-+.+|.+- .-.|.. . .-..+...|...+.++.|+.-|....+ .--.-|.. .-..+.-.
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k-~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATK-LTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHH-hhhHHHHHHHHHHhHHHH
Confidence 468888888888887762 112221 1 111222334556778888877776653 21122222 22345667
Q ss_pred HHhcCCHHHHHHHHHhcCCCCCHHH----------HHHHHHHHHHcCChHHHHHHHHHHHhcCC-C-----CCchHHHHH
Q 042503 380 LGRSGCVREAYDLIRSMSIRPNAAI----------WGSLLSSCRTHGHVELAEHAVKELINLEP-W-----NSGNYVLLS 443 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~~~~p~~~~----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~-----~~~~~~~l~ 443 (477)
|.+.|+-+.-.++++..+ +|+..+ +..-+-.....+++.+|.+.+.+.++... . ..-....|+
T Consensus 414 YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs 492 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLS 492 (629)
T ss_pred HHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 888888877777777773 121111 11111122467888888888888776541 1 122344455
Q ss_pred HHHHhcCCchHHHHHHHHH
Q 042503 444 NIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~ 462 (477)
.+....|+..++.+...-.
T Consensus 493 ~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 493 HVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHhcchHHHHhccchH
Confidence 5666777777776655433
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=85.89 E-value=42 Score=33.98 Aligned_cols=179 Identities=12% Similarity=0.040 Sum_probs=83.9
Q ss_pred hcCChHHHHHHhccCCC--------CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHH---HH--HHHhhc
Q 042503 280 KCGILDTARNVFKEIPR--------KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFV---GV--LTCCAH 346 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~l--~~~~~~ 346 (477)
..|+++.|.++.+.... .....+..+..+..-.|++++|..+..+..+..-.-+...+. .+ ...+..
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~ 549 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA 549 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 34566666555544332 344556666777777788888887777665542222222222 22 123444
Q ss_pred ccc--HHHHHHHHHHhhhccCCC-----CChHHHHHHHHHHHhcCCHHHHHHH----HHhc-CCCCCH--HH--HHHHHH
Q 042503 347 AGL--VEKARELFASMTGLHSIV-----PNLEHYGCMVDVLGRSGCVREAYDL----IRSM-SIRPNA--AI--WGSLLS 410 (477)
Q Consensus 347 ~~~--~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~-~~~p~~--~~--~~~l~~ 410 (477)
.|+ ....+..|.......... +-..++..+..++.+ .+.+..- +.-. ...|.. .. +..|+.
T Consensus 550 qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~ 626 (894)
T COG2909 550 QGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAE 626 (894)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHH
Confidence 553 223333333333211111 112233334444443 3333222 2211 112222 22 225666
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCC--CchHH---HHHHH--HHhcCCchHHHHHHHH
Q 042503 411 SCRTHGHVELAEHAVKELINLEPWN--SGNYV---LLSNI--YAEGGRWDDAETLRMW 461 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~---~l~~~--~~~~g~~~~A~~~~~~ 461 (477)
.....|+.++|...+.++..+...+ ...|. ..+.. -...|+.++|.....+
T Consensus 627 l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 627 LEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 7777888888888888877654222 11122 22222 2255777777666555
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.88 E-value=4.8 Score=35.16 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM----SIRPN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
|.-=..-|.+..++..|...|.+. .-.|| ...|+.-..+-...|++..|+.-..+++..+|.+..+|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333445567777888888888776 11333 356666666667788999999999999999999999999889998
Q ss_pred HhcCCchHHHHHHHHHH
Q 042503 447 AEGGRWDDAETLRMWMR 463 (477)
Q Consensus 447 ~~~g~~~~A~~~~~~~~ 463 (477)
....++++|..+.++..
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 88888888887776654
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.28 E-value=0.74 Score=40.09 Aligned_cols=119 Identities=21% Similarity=0.163 Sum_probs=69.4
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHH-HHHHHHHHHHHcCChHHH
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAA-IWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a 421 (477)
....|.++.|++.|...++. -++....|..-..++.+.++...|++-+... .+.||.. .|-.-..+....|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 34567777777777777632 2445555555566667777777777766665 5555542 233333344556777777
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.+.+..+.+++-+ ..+-..+-.+.-+.+..++-...+++.++.
T Consensus 202 a~dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 202 AHDLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHHH
Confidence 7777777766642 334444455555555555555555554443
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=85.05 E-value=4.8 Score=30.06 Aligned_cols=69 Identities=17% Similarity=0.086 Sum_probs=34.8
Q ss_pred CChHHHHHHHHHHHhcCC---HHHHHHHHHhc-C-CCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 368 PNLEHYGCMVDVLGRSGC---VREAYDLIRSM-S-IRPNA--AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~-~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
++..+--.+.-++.+..+ ..+.+.++++. . -.|+. ....-|.-++.+.|+++.++++++.+++.+|++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 444444444445554443 33445555555 2 22322 2333344556666666666666666666666544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.91 E-value=41 Score=32.96 Aligned_cols=272 Identities=12% Similarity=0.054 Sum_probs=149.2
Q ss_pred hHHHHHHHHhcCC-CChhhHHHHHHH-----HHhcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHhhccC--
Q 042503 182 VDKGLYLFREMRE-RSVVSWNLMISS-----LGKSGRDSEALRLFHEMRD-------QAFELDEATVVAVLPICARLG-- 246 (477)
Q Consensus 182 ~~~a~~~~~~~~~-~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~~-- 246 (477)
...|.+.++...+ .++..-..+... +....+.+.|+.+|+.+.+ .| +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4567777776665 333333333322 3345678888888888766 44 2223444555555533
Q ss_pred ---cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc---CChHHHHHHhccCCC-CCceeHHHHHHHHH----hcCCc
Q 042503 247 ---AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC---GILDTARNVFKEIPR-KNVVSWNAMISGLA----FNGRG 315 (477)
Q Consensus 247 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~----~~~~~ 315 (477)
+...|..++....+.|. ++... .+...+... .+...|..+|....+ ..+..+-.+..+|. ...+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~--~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN--PDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC--chHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCH
Confidence 45568888888888874 33333 233333322 356788888887664 33333333333332 23467
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH---HHh----cCCHHH
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV---LGR----SGCVRE 388 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~~~~ 388 (477)
..|..++++..+.| .|....-...+..+.. +.++.+...+..+.+ .+.......-..++.. ... ..+.+.
T Consensus 381 ~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~ 457 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLER 457 (552)
T ss_pred HHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhH
Confidence 88888888888888 4443333333334444 666665555555542 3222111111111111 111 225566
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc-C--CchHHHHHHHH
Q 042503 389 AYDLIRSMSIRPNAAIWGSLLSSCRTH----GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG-G--RWDDAETLRMW 461 (477)
Q Consensus 389 A~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~ 461 (477)
+...+.+...+-+......+...|..- .+++.|...|..+.... ......++.++... | .+..|.+++++
T Consensus 458 ~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~ 534 (552)
T KOG1550|consen 458 AFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHH
Confidence 666666664445555666666555432 36778888888877666 55666666665532 1 15778888877
Q ss_pred HHhCC
Q 042503 462 MRENN 466 (477)
Q Consensus 462 ~~~~~ 466 (477)
..+.+
T Consensus 535 ~~~~~ 539 (552)
T KOG1550|consen 535 ASEED 539 (552)
T ss_pred HHhcC
Confidence 76643
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=84.88 E-value=9.8 Score=29.07 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=53.0
Q ss_pred HHHhHHHHHhhcCChhHHHHHhccCCC---------CCcchHHHHHHHHHhcCC-CchHHHHHHHHHhCCCCCCcccHHH
Q 042503 36 ILAHFVSVCGTLNEIKYATKIFNQMRN---------PSVLLFNSMIKAYSLNGP-SEEPVKLFALLKNLGIWPDEYTFAP 105 (477)
Q Consensus 36 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~ 105 (477)
..+.++.-.+.-+++.....+++.+.. .+...|+.++.+..+... --.+..+|+.|++.+.++++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456666666667777777777776643 445567777777755544 3456677777777777777778888
Q ss_pred HHHHhhcc
Q 042503 106 LLKACLGV 113 (477)
Q Consensus 106 l~~~~~~~ 113 (477)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 88776654
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=84.76 E-value=2.1 Score=28.39 Aligned_cols=46 Identities=9% Similarity=0.034 Sum_probs=33.0
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCchHHHHHH
Q 042503 414 THGHVELAEHAVKELINLEPWNSG---NYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
...+.++|+..|+++++..++.+. ++..++.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888888877655444 4445666778888888877663
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.55 E-value=61 Score=38.59 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=35.6
Q ss_pred ccchhHHHhHHHHHhhcCChhHHHHHhccCCC-CCcchHHHHHHHHHhcCCCchHHHHHHHHHh
Q 042503 31 HQSNLILAHFVSVCGTLNEIKYATKIFNQMRN-PSVLLFNSMIKAYSLNGPSEEPVKLFALLKN 93 (477)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 93 (477)
.++......+...|......|.--.+|++-.. |. +.....|.+.|.+++|..+|++...
T Consensus 2451 ~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~e----T~~a~s~eQ~G~~e~AQ~lyekaq~ 2510 (3550)
T KOG0889|consen 2451 KGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFPE----TMVALSYEQLGFWEEAQSLYEKAQV 2510 (3550)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccHH----HHHHHHHHHhhhHHHHhhHHHHHHH
Confidence 34556666777777777766666666654221 22 2333456667777777777776543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.65 E-value=2.2 Score=21.72 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=25.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
..+..++..+...|++++|...+++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999988764
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.61 E-value=57 Score=33.57 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCCCchHHHHHHHHHhC
Q 042503 66 LLFNSMIKAYSLNGPSEEPVKLFALLKNL 94 (477)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 94 (477)
.-|..|+..|...|..++|++++.+..+.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 35889999999999999999999998873
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.60 E-value=33 Score=31.21 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhcccCC------CchHHhHHHHHHHHhcCChHHHHHHHHhcCC
Q 042503 136 SIRIGVVELYTSCGQMDDGMKVFDEMSH------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE 194 (477)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 194 (477)
..+..+.+.|..+|+++.|++.|.+..+ ..+..|-.++..-.-.|+|........+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3566778889999999999999998665 3344555666666667777776666655543
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=83.46 E-value=39 Score=31.50 Aligned_cols=31 Identities=10% Similarity=0.084 Sum_probs=14.5
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhcCCCch
Q 042503 53 ATKIFNQMRNPSVLLFNSMIKAYSLNGPSEE 83 (477)
Q Consensus 53 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (477)
...+.+.+..++...-....+++...+....
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a 118 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQA 118 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHH
Confidence 3334444444444445555555555544333
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=82.96 E-value=5.1 Score=28.05 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=34.9
Q ss_pred HHcCChHHHHHHHHHHHhcCCCC---------CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 413 RTHGHVELAEHAVKELINLEPWN---------SGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.+.||+..|.+.+.+..+....+ ..+...++......|++++|...+++.++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46778888877777766543111 123445666777888888888888877653
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.74 E-value=5.2 Score=37.87 Aligned_cols=100 Identities=15% Similarity=0.055 Sum_probs=52.0
Q ss_pred cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHH
Q 042503 347 AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHA 424 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~ 424 (477)
.|+...|...+....-......+ .....|.....+.|...+|..++.+. .+ ...+.++..+++++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 35555666555554421111111 12233444555555555666555444 11 23334555666666666666666666
Q ss_pred HHHHHhcCCCCCchHHHHHHHHH
Q 042503 425 VKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 425 ~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
++.+.++.|.++.+-+.|...-+
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHHH
Confidence 66666666666666555554433
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.43 E-value=2.6 Score=24.41 Aligned_cols=26 Identities=4% Similarity=0.026 Sum_probs=22.4
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhh
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHK 29 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~ 29 (477)
.|.++|...|+.+.|+.+++.++..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57888999999999999999998665
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=82.04 E-value=57 Score=32.48 Aligned_cols=159 Identities=9% Similarity=-0.007 Sum_probs=90.1
Q ss_pred HHHHHHhh-cCCCchhHhHHHHHHHHhhcccchh-----HHHhHHHHHhhcCChhHHHHHhccCCC----CCcchHHH--
Q 042503 3 RKILRLLH-GRNTRTHLTQIHAHFLRHKLHQSNL-----ILAHFVSVCGTLNEIKYATKIFNQMRN----PSVLLFNS-- 70 (477)
Q Consensus 3 ~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~-- 70 (477)
.++.+.+. +..+++.|+..++......-.++.. ....++..+.+.+... |...+++..+ .....|..
T Consensus 63 l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~f 141 (608)
T PF10345_consen 63 LRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAF 141 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHH
Confidence 34555555 6778899998888665443222211 2233456666655544 8887776554 11222332
Q ss_pred --H-HHHHHhcCCCchHHHHHHHHHhCC---CCCCcccHHHHHHHhh--ccCCchhHHHHHHHHHHhcc---------cC
Q 042503 71 --M-IKAYSLNGPSEEPVKLFALLKNLG---IWPDEYTFAPLLKACL--GVGDLRVGQCVHGEIIRSGF---------ER 133 (477)
Q Consensus 71 --l-~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~---------~~ 133 (477)
+ +..+...+++..|.+.++.+.... ..|....+..++.+.. +.+..+.+.+.++.+..... .|
T Consensus 142 rll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~ 221 (608)
T PF10345_consen 142 RLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIP 221 (608)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcH
Confidence 2 222223478999999998887642 2333444445555543 45666777777777754322 22
Q ss_pred cchHHHHHHHHH--HhcCChhhHHHHhcccC
Q 042503 134 FGSIRIGVVELY--TSCGQMDDGMKVFDEMS 162 (477)
Q Consensus 134 ~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~ 162 (477)
...++..+++.+ ...|+++.+...++++.
T Consensus 222 qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 222 QLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445566666554 45677777777666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.77 E-value=43 Score=32.08 Aligned_cols=52 Identities=23% Similarity=0.180 Sum_probs=30.8
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-hcCCchHHHHHHHHH
Q 042503 411 SCRTHGHVELAEHAVKELINLEPW-NSGNYVLLSNIYA-EGGRWDDAETLRMWM 462 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 462 (477)
.+.+.|-+..|.++.+-+++++|. ||-....+++.|+ ++.+++=-+++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344556666666666666666665 5666666666654 555555555555554
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.75 E-value=2.5 Score=34.73 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=24.8
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 414 THGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+.+|.+.+.+++.+++++-|.....|..++..-.++|+.+.|.+-+++..+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 344444444445554444444444444444444445555544444444444
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.16 E-value=19 Score=30.95 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=31.5
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHH-------HHHHHhhccccHHHHHHH
Q 042503 305 MISGLAFNGRGELGVELYEQMIAKGVSPNKATFV-------GVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~ 356 (477)
+.+-..+.+++++|+..+.++...|+..+..+.+ .+...|...|++..-.+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3444566777888888888888777777766543 234445555554443333
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.97 E-value=5.1 Score=34.53 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=21.5
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHH
Q 042503 414 THGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
+.|+.++|..+|+.++.+.|.++.....++......+++-+|-+++
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Confidence 3444444444444444444444444444444444444444444443
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.55 E-value=40 Score=29.67 Aligned_cols=148 Identities=12% Similarity=-0.068 Sum_probs=72.8
Q ss_pred CchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC-----
Q 042503 314 RGELGVELYEQMIAKGVSPNKATFVGVLTCCAH----AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG----- 384 (477)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 384 (477)
+..+|..+|+.+.+.|.++ ....|...+.. ..+..+|...++++. ..|..+.......+...|..-.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa-~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPLDLVKALKYYEKAA-KLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcccCHHHHHHHHHHHH-HcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 3455666666555544221 12223322322 235666666666666 3443332222333333333321
Q ss_pred --CHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC--------
Q 042503 385 --CVREAYDLIRSMSIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG-------- 450 (477)
Q Consensus 385 --~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 450 (477)
+...|...+.++-..-+......+...|.. ..|.++|...|+++-+.+. ......+. .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 168 AYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred cHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 223566666666222244444444444422 2367777777777777665 44444555 444444
Q ss_pred -------CchHHHHHHHHHHhCCCc
Q 042503 451 -------RWDDAETLRMWMRENNVK 468 (477)
Q Consensus 451 -------~~~~A~~~~~~~~~~~~~ 468 (477)
+...|...+......|.+
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcCCh
Confidence 666667777666665543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.11 E-value=21 Score=34.28 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=64.7
Q ss_pred hHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccC
Q 042503 35 LILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVG 114 (477)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 114 (477)
...+.++..+.++|-.++|+++--. |+ .-.....+.|+.+.|.++..+.. +..-|..|.++....+
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D---~d-----~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTD---PD-----QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCC---hh-----hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcc
Confidence 3455666667777777777664321 11 11223344556666655543332 3344666666666666
Q ss_pred CchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcC
Q 042503 115 DLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR 193 (477)
Q Consensus 115 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 193 (477)
++..|.+.|..... +..|+-.+...|+.+....+-....+.. -.|.-..+|...|+++++.+++.+-.
T Consensus 681 ~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g--~~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 681 ELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG--KNNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc--ccchHHHHHHHcCCHHHHHHHHHhcC
Confidence 66666666654432 2233334444444433333222222200 01222234555677777777666543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.5 bits (176), Expect = 1e-13
Identities = 28/196 (14%), Positives = 66/196 (33%), Gaps = 12/196 (6%)
Query: 98 PDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKV 157
P E A LL+ G L V Q G+ ++ + + Q+ +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 158 FDEMSHR-------DVIVRNLMIHGFCKKGDVDKGLYLFREMRERSV----VSWNLMISS 206
+ + + N ++ G+ ++G + +Y+ +++ + +S+ +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 207 LGKSGRDSEAL-RLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYR 265
+G+ +D+ + R +M + +L +L R + +
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 266 KVVSVGNALVDFYCKC 281
V+ L D Y K
Sbjct: 270 PPVNTSKLLRDVYAKD 285
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 6e-11
Identities = 25/194 (12%), Positives = 58/194 (29%), Gaps = 8/194 (4%)
Query: 216 ALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALV 275
A L R E + +L ++D+ Q + L + + A
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRL-LAFF 134
Query: 276 DFYCKCGILDTARNVFKEIPRK-------NVVSWNAMISGLAFNGRGELGVELYEQMIAK 328
L A ++ + + +NA++ G A G + V + +
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 329 GVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVRE 388
G++P+ ++ L C E + ++ R+ ++
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254
Query: 389 AYDLIRSMSIRPNA 402
+ + + S+ P
Sbjct: 255 VHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.8 bits (117), Expect = 2e-06
Identities = 15/97 (15%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 26 LRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN-------PSVLLFNSMIKAYSLN 78
+ +L L F C +++ A + ++ ++N+++ ++
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 79 GPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGD 115
G +E V + ++K+ G+ PD ++A L+
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.4 bits (112), Expect = 5e-06
Identities = 24/186 (12%), Positives = 58/186 (31%), Gaps = 12/186 (6%)
Query: 278 YCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATF 337
Y + K + + LA + R + V ++ +++ V TF
Sbjct: 44 YLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTF 103
Query: 338 VGVL-TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396
+ + + + + A +LE V +L + + A ++ M
Sbjct: 104 LLMAASIYFYDQNPDAALRTLHQGD-------SLECMAMTVQILLKLDRLDLARKELKKM 156
Query: 397 -SIRPNAAIWGSLLSSCRTH---GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW 452
+A + + ++ A + +E+ + + + GRW
Sbjct: 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216
Query: 453 DDAETL 458
+ AE +
Sbjct: 217 EAAEGV 222
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 5e-04
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 7/163 (4%)
Query: 297 KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL-TCCAHAGLVEKARE 355
+ S N + + G E V LY + + V P A L + G +++A
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALM 64
Query: 356 LFASMTGLHSIVPN-LEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAI-WGSLLSSCR 413
+ + + + G + + + Y R++ I P A +L S +
Sbjct: 65 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT--RAIQINPAFADAHSNLASIHK 122
Query: 414 THGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAE 456
G++ A + + + L+P Y L++ W D +
Sbjct: 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 37/303 (12%), Positives = 85/303 (28%), Gaps = 71/303 (23%)
Query: 176 FCKKGDVDKGLYLFREMRER---SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDE 232
+ L + ++ E ++ + L ++SL +SG ++ + + +
Sbjct: 315 LFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN----DLVDRH- 369
Query: 233 ATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFK 292
P A + +VG Y + AR F
Sbjct: 370 -------P---------------EKAVT--WL----AVGIY----YLCVNKISEARRYFS 397
Query: 293 ---EIPRKNVVSWNAMISGLAF--NGRGELGVELYEQMIAKGVSPNKAT---FVGVLTCC 344
+ + +W +F G + + Y + F+G+
Sbjct: 398 KSSTMDPQFGPAWIGF--AHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGM--QH 451
Query: 345 AHAGLVEKARELF--ASMTGLHSIVPNLEH-YGCMVDVLGRSG-------CVREAYDLIR 394
G + A E + +++ + V + A L++
Sbjct: 452 MQLGNILLANEYLQSS-----YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506
Query: 395 SMSIRP--NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW 452
AA W +L + R + A A+ + + L ++ + ++ +Y
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP 566
Query: 453 DDA 455
A
Sbjct: 567 GLA 569
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 53/318 (16%), Positives = 108/318 (33%), Gaps = 72/318 (22%)
Query: 176 FCKKGDVDKGLYLFR---EMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDE 232
+ +D+ + + +++ + + + G+ EA+ + A L
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY----RHALRLK- 97
Query: 233 ATVVAVLPICAR----LGAV--DIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI--- 283
P L A G + Y + L G
Sbjct: 98 -------PDFIDGYINLAAALVAAGD----MEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146
Query: 284 ----LDTARNVFK---EIPRKNVVSWNAMISGLAFNGRGELG--VELYEQMIAKGVSPNK 334
L+ A+ + E V+W+ + G FN +GE+ + +E+ + + PN
Sbjct: 147 ALGRLEEAKACYLKAIETQPNFAVAWSNL--GCVFNAQGEIWLAIHHFEKAVT--LDPNF 202
Query: 335 ATFVGVLTCCAH---------AGLVEKARELF--ASMTGLHSIVPNL-EHYGCMVDVLGR 382
A+ A + ++A + A S+ PN +G + V
Sbjct: 203 LD--------AYINLGNVLKEARIFDRAVAAYLRAL-----SLSPNHAVVHGNLACVYYE 249
Query: 383 SGCVREA---YDLIRSMSIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438
G + A Y R++ ++P+ + +L ++ + G V AE + L P ++ +
Sbjct: 250 QGLIDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307
Query: 439 YVLLSNIYAEGGRWDDAE 456
L+NI E G ++A
Sbjct: 308 LNNLANIKREQGNIEEAV 325
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 7e-04
Identities = 41/302 (13%), Positives = 106/302 (35%), Gaps = 51/302 (16%)
Query: 2 ERKILRLLHGRNTRTH--LTQIHAHFLRHKL----HQSNLILAHFVSVCGTLNEIKYATK 55
+ L H T T + + +L + + +S+ I+
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES--IRDGLA 342
Query: 56 IFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGV-- 113
++ ++ + ++I++ SLN EP + + L ++P A + L +
Sbjct: 343 TWDNWKHVNCDKLTTIIES-SLN--VLEPAEYRKMFDRLSVFPPS---AHIPTILLSLIW 396
Query: 114 GDLRVGQCVHGEIIRSGFERFGSIRI----GVVELYTSCGQMDDGMKVFDEMS-HRDVIV 168
D+ + V ++ + ++ + + + + ++ +K+ +E + HR ++
Sbjct: 397 FDV-IKSDV--MVVVNKLHKYSLVEKQPKESTISIPS--IYLELKVKLENEYALHRSIVD 451
Query: 169 RNLMIHGFCKKGDVDKGL--YLFREMRERSVVSWNLM--ISSLGKSGRDSEALRLFHEMR 224
+ F + L Y + ++ + ++ R + +F + R
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFY----------SHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 225 DQAFELDEATVVAVLPICARLGAVDIGQWIHSY----AESSGLYRKVVSVGNALVDFYCK 280
F L++ A ++ Q + Y ++ Y ++V NA++DF K
Sbjct: 502 ---F-LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV---NAILDFLPK 554
Query: 281 CG 282
Sbjct: 555 IE 556
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.76 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.75 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.7 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.7 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.69 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.69 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.69 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.66 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.65 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.65 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.64 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.57 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.57 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.56 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.54 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.52 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.52 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.52 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.49 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.48 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.47 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.47 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.47 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.35 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.34 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.34 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.34 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.29 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.29 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.28 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.27 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.27 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.26 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.25 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.24 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.23 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.23 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.22 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.2 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.18 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.17 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.16 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.13 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.13 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.12 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.11 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.11 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.1 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.1 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.09 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.09 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.09 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.06 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.05 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.05 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.03 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.02 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.01 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.99 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.94 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.94 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.94 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.93 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.93 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.93 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.91 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.91 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.91 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.9 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.9 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.89 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.89 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.88 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.86 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.84 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.84 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.84 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.83 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.82 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.82 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.81 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.8 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.79 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.78 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.78 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.78 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.78 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.77 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.77 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.77 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.76 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.75 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.74 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.73 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.73 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.69 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.69 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.68 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.67 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.66 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.65 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.65 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.64 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.63 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.6 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.58 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.58 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.58 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.57 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.57 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.57 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.56 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.56 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.55 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.54 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.52 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.51 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.5 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.49 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.48 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.46 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.46 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.42 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.38 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.33 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.33 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.32 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.3 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.3 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.3 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.29 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.28 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.27 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.25 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.16 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.15 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.15 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 98.14 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.05 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.03 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.0 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.97 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.96 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.92 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.9 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.88 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.76 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.65 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.64 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.57 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.57 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.56 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.53 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.42 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.41 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.31 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.16 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.16 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.09 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.98 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.91 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.81 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.67 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.53 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.52 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.34 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.3 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.24 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.12 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.07 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.06 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.74 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.73 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.65 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.61 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.34 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.32 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.67 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.67 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.33 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.46 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.24 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.14 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 93.04 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.9 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 92.28 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 91.19 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.15 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 91.06 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 90.99 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.93 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.8 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.61 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.55 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.28 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.0 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.87 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 89.72 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.33 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 89.22 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 89.06 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.59 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.38 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.98 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 86.67 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.34 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 84.35 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 84.02 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.53 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.45 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.9 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 82.15 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-43 Score=340.20 Aligned_cols=456 Identities=10% Similarity=-0.024 Sum_probs=361.1
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCC--CCCcchHHHHHHHHHhcC
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMR--NPSVLLFNSMIKAYSLNG 79 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~ 79 (477)
|..+++.+.+.|++++|..+++.+.... |+..++..++.+|.+.|++++|+.+|+.+. .+++.+++.++.+|.+.|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 164 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLY 164 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHh
Confidence 4566677777777777777777777543 455666777777777777777777777764 366777777777777777
Q ss_pred CCchHHHHHHHHHhC---------------CCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHH
Q 042503 80 PSEEPVKLFALLKNL---------------GIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVEL 144 (477)
Q Consensus 80 ~~~~a~~~~~~~~~~---------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (477)
++++|.++|+++... +.+++..+|+.++.++.+.|++++|.++|+++.+.++. +...+..+...
T Consensus 165 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~ 243 (597)
T 2xpi_A 165 DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSN 243 (597)
T ss_dssp CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHh
Confidence 777777777742211 12234567777777777777777777777777765432 33444444443
Q ss_pred HHhcCChhhHHHH---hcccCC----CchHHhHHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHHHHHHHHhcCChhH
Q 042503 145 YTSCGQMDDGMKV---FDEMSH----RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE--RSVVSWNLMISSLGKSGRDSE 215 (477)
Q Consensus 145 ~~~~g~~~~A~~~---~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~ 215 (477)
+...++.+.+... +..+.. ....+|+.++..|.+.|++++|.++|+++.+ ++..+|+.++..+.+.|++++
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHH
T ss_pred hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 3333222211110 111111 2233455557778889999999999999987 788999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC
Q 042503 216 ALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP 295 (477)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (477)
|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+..++..++..|.+.|++++|..+|+++.
T Consensus 324 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 324 VLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH--PEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999998875 4477889999999999999999999999999776 7888899999999999999999999999875
Q ss_pred C---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHH
Q 042503 296 R---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEH 372 (477)
Q Consensus 296 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 372 (477)
+ .+..+|+.++.++.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+
T Consensus 401 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 477 (597)
T 2xpi_A 401 TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLL 477 (597)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHH
Confidence 4 457789999999999999999999999999875 668889999999999999999999999999853 2557889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-------CCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-------SIRPN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLS 443 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (477)
|+.++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++.+|.++.+|..++
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 557 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIA 557 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999999999999999988 44777 789999999999999999999999999999999999999999
Q ss_pred HHHHhcCCchHHHHHHHHHHhCC
Q 042503 444 NIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+|.+.|++++|.+.++++++..
T Consensus 558 ~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 558 LVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999998764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-40 Score=320.60 Aligned_cols=439 Identities=9% Similarity=-0.014 Sum_probs=381.7
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCC------------------
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNP------------------ 63 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------ 63 (477)
+..++.+|...|++++|..+++.+... ++++.+++.++.+|.+.|++++|+++|+++...
T Consensus 120 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (597)
T 2xpi_A 120 AFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIK 197 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccc
Confidence 356788999999999999999988654 678899999999999999999999999965443
Q ss_pred -CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHH--HH-HHHHHHhcccCcchHHH
Q 042503 64 -SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQ--CV-HGEIIRSGFERFGSIRI 139 (477)
Q Consensus 64 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~ 139 (477)
++.+|+.++.+|.+.|++++|.++|++|.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+
T Consensus 198 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 198 LEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 37899999999999999999999999999864 234555555655554443322211 11 44555555666677788
Q ss_pred HHHHHHHhcCChhhHHHHhcccCC--CchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChh
Q 042503 140 GVVELYTSCGQMDDGMKVFDEMSH--RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDS 214 (477)
Q Consensus 140 ~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 214 (477)
.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|.++|+++.+ .+..+++.++.++.+.|+++
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH
Confidence 889999999999999999999988 8899999999999999999999999999874 46778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccC
Q 042503 215 EALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEI 294 (477)
Q Consensus 215 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (477)
+|..+++++.+.. +.+..++..++..|.+.|++++|..+|+.+.+.. |.+..+|..++..|.+.|++++|.++|+++
T Consensus 357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998653 5678899999999999999999999999999987 778889999999999999999999999987
Q ss_pred CC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhcc---CCCC
Q 042503 295 PR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLH---SIVP 368 (477)
Q Consensus 295 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~ 368 (477)
.+ .+..+|+.++.+|.+.|++++|..+|+++.+.. +.+..+|..++.++.+.|++++|.++|+++.+.. +..|
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 54 477899999999999999999999999999875 6689999999999999999999999999997431 5567
Q ss_pred C--hHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 369 N--LEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 369 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
+ ..+|..++.+|.+.|++++|.+.|+++ .. +.+..+|..++.+|.+.|++++|.+.++++++.+|.++..+..++.
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 7 789999999999999999999999998 33 4478999999999999999999999999999999999999999988
Q ss_pred HHH
Q 042503 445 IYA 447 (477)
Q Consensus 445 ~~~ 447 (477)
+|.
T Consensus 593 ~~~ 595 (597)
T 2xpi_A 593 ALE 595 (597)
T ss_dssp TTC
T ss_pred HHh
Confidence 764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-31 Score=241.83 Aligned_cols=372 Identities=13% Similarity=0.102 Sum_probs=278.0
Q ss_pred HHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCCh
Q 042503 72 IKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQM 151 (477)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (477)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++..++.. +.+...+..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344556666666666666665532 2233444445555566666666666666666543 22555666666666666666
Q ss_pred hhHHHHhcccCC--C-chHHhHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042503 152 DDGMKVFDEMSH--R-DVIVRNLMIHGFCKKGDVDKGLYLFREMRE--R-SVVSWNLMISSLGKSGRDSEALRLFHEMRD 225 (477)
Q Consensus 152 ~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 225 (477)
++|...|+++.+ | +...|..+..++.+.|++++|.+.|+++.+ | +...+..+...+...|++++|...|+++..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666666543 2 334566666677777777777777766654 3 334566677777778888888888888776
Q ss_pred cCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeH
Q 042503 226 QAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSW 302 (477)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~ 302 (477)
.. +.+..++..+...+...|+++.|...++++.+.+ |.....+..+...+...|++++|...|++..+ .+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 53 3346677777777888888888888888888776 67777888888888888888888888876653 345678
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR 382 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (477)
..+..++...|++++|...++++.+.+ +.+..++..+..++.+.|++++|...|+++.+. .+.+..++..+...+.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 888889999999999999999998875 556778889999999999999999999998843 36678889999999999
Q ss_pred cCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 383 SGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 383 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
.|++++|.+.++++ ...| +..++..++.++.+.|++++|...++++++..|.++.++..++..+...|+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999998 4444 467889999999999999999999999999999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-29 Score=233.34 Aligned_cols=353 Identities=12% Similarity=0.071 Sum_probs=312.2
Q ss_pred HHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHHHHHHHhcCCh
Q 042503 106 LLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDV 182 (477)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 182 (477)
+...+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+ .+..+|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 345667889999999999999886433 556777788889999999999999987765 4667899999999999999
Q ss_pred HHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHH
Q 042503 183 DKGLYLFREMRE--R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAE 259 (477)
Q Consensus 183 ~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (477)
++|.+.|+++.. | +..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999874 4 45579999999999999999999999998864 3345566778888899999999999999999
Q ss_pred HhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHH
Q 042503 260 SSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKAT 336 (477)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 336 (477)
+.. |.+..++..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...+++..... +.+..+
T Consensus 163 ~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 987 88889999999999999999999999998865 345678889999999999999999999998875 557889
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHH
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 414 (477)
+..+..++...|++++|...|+++.+. .+.+..+|..+...+.+.|++++|.+.|+++ ..+++..++..++..+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999853 2456778999999999999999999999998 335577899999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 415 HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.|++++|...++++++..|+++.++..++.+|.+.|++++|...++++++.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.4e-29 Score=232.01 Aligned_cols=212 Identities=11% Similarity=0.035 Sum_probs=133.6
Q ss_pred chHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcc
Q 042503 82 EEPVKLFALLKNLGIWPDEY-TFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDE 160 (477)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (477)
..+..+.+.+.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|.+.+...++.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~----- 81 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS----- 81 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSS-----
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhh-----
Confidence 34455666777776655543 578888999999999999999999999999988888888888887776543210
Q ss_pred cCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 042503 161 MSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE----RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVV 236 (477)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 236 (477)
+.+.+++|.++|++|.. ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 82 -----------------~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 82 -----------------PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred -----------------hcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 12223444444444432 555556666666666666666666666666555566655555
Q ss_pred HHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCch
Q 042503 237 AVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGE 316 (477)
Q Consensus 237 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (477)
.+|.+|++.|+++.|.++++.|.+.|+ .||..+|++|+.+|++.|+.+
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~--------------------------------~Pd~~ty~~Li~~~~~~g~~d 192 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEV--------------------------------VPEEPELAALLKVSMDTKNAD 192 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTC--------------------------------CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC--------------------------------CCCHHHHHHHHHHHhhCCCHH
Confidence 555555555555555555555555554 577778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
+|.+++++|.+.|..|+..||+.++..|...
T Consensus 193 ~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 193 KVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888777654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-27 Score=223.85 Aligned_cols=432 Identities=10% Similarity=-0.041 Sum_probs=249.6
Q ss_pred HHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcC
Q 042503 3 RKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNG 79 (477)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 79 (477)
......+...|++++|...++.+++.. |++..+..+..++.+.|++++|+..|+.+.+ .+..+|..+..++.+.|
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 345566677778888888888777775 5677777777777778888888877776654 34457777777777778
Q ss_pred CCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHH---hcCChhhHHH
Q 042503 80 PSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYT---SCGQMDDGMK 156 (477)
Q Consensus 80 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~ 156 (477)
++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+......-..... .......+..
T Consensus 88 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp CHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 8888888887777754 34444444444444333222222222222111111111100000000000 0000001111
Q ss_pred Hhccc---------CC-CchHHhHHHHHHHHh---cCChHHHHHHHHhcCC----------------C-ChhhHHHHHHH
Q 042503 157 VFDEM---------SH-RDVIVRNLMIHGFCK---KGDVDKGLYLFREMRE----------------R-SVVSWNLMISS 206 (477)
Q Consensus 157 ~~~~~---------~~-~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~----------------~-~~~~~~~l~~~ 206 (477)
.+... .. .+...+......+.. .|++++|...|+++.+ | +..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 11111 11 123334444444443 6777777777766544 1 23456667777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHH
Q 042503 207 LGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDT 286 (477)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (477)
+...|++++|...++.+.... |+...+..+..++...|+++.|...++.+.+.. |.+..++..+...+...|++++
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHHHHHHHhCCHHH
Confidence 777777777777777777654 236666667777777777777777777777665 5556666667777777777777
Q ss_pred HHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhc
Q 042503 287 ARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGL 363 (477)
Q Consensus 287 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 363 (477)
|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7777666532 234556666666666777777777777766653 334556666666666777777777777666532
Q ss_pred cCCCCC----hHHHHHHHHHHHh---cCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 364 HSIVPN----LEHYGCMVDVLGR---SGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 364 ~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
..-.++ ...+..+...+.. .|++++|.+.++++ .. +.+..++..++..+...|++++|...++++++..|.
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 211222 2356666666666 67777777776666 22 234556666666677777777777777777777766
Q ss_pred CCchHHHH
Q 042503 435 NSGNYVLL 442 (477)
Q Consensus 435 ~~~~~~~l 442 (477)
++..+..+
T Consensus 482 ~~~~~~~~ 489 (514)
T 2gw1_A 482 MEEKLQAI 489 (514)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 65555444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-27 Score=222.78 Aligned_cols=425 Identities=10% Similarity=-0.067 Sum_probs=320.7
Q ss_pred hhHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhh
Q 042503 34 NLILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACL 111 (477)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 111 (477)
...+......+.+.|++++|+..|+++.. |+..+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45667777888888999999999888765 788888888889999999999999999888764 445667888888888
Q ss_pred ccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC----CchHHhHHH---HHHHHhcCChHH
Q 042503 112 GVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH----RDVIVRNLM---IHGFCKKGDVDK 184 (477)
Q Consensus 112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l---~~~~~~~~~~~~ 184 (477)
..|++++|...|+.+.+.++. +......++..+........+.+.+..+.. ++...+..- ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 899999999999888887543 444444455544444444444433322211 111000000 000001111111
Q ss_pred HHHHHHhcCC---------C-ChhhHHHHHHHHHh---cCChhHHHHHHHHHHH-----cCCC--------CCHHHHHHH
Q 042503 185 GLYLFREMRE---------R-SVVSWNLMISSLGK---SGRDSEALRLFHEMRD-----QAFE--------LDEATVVAV 238 (477)
Q Consensus 185 a~~~~~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~--------~~~~~~~~l 238 (477)
+...+..... | +...+......+.. .|++++|...|+++.. .... .+...+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1112221111 1 13445555555554 8999999999999987 3112 234567778
Q ss_pred HHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCc
Q 042503 239 LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRG 315 (477)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 315 (477)
...+...|+++.|...++.+.+.. |. ..++..++..+...|++++|...++++.+ .+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCH
Confidence 888999999999999999999988 55 88889999999999999999999998765 3567888999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRS 395 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (477)
++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.+++
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999875 5567789999999999999999999999998532 45677899999999999999999999998
Q ss_pred c-C---CCCC----HHHHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 396 M-S---IRPN----AAIWGSLLSSCRT---HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 396 ~-~---~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+ . ..++ ...+..++..+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|...+++..+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8 2 2222 3488999999999 99999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 042503 465 NN 466 (477)
Q Consensus 465 ~~ 466 (477)
.+
T Consensus 478 ~~ 479 (514)
T 2gw1_A 478 LA 479 (514)
T ss_dssp HC
T ss_pred hc
Confidence 64
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-28 Score=224.72 Aligned_cols=184 Identities=18% Similarity=0.215 Sum_probs=140.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc---------ccchHHHHHHHHHhCCccchh
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGA---------VDIGQWIHSYAESSGLYRKVV 268 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 268 (477)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|+.|...|+
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~----- 101 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKV----- 101 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCC-----
Confidence 35788899999999999999999999999999999999999999987765 3556677777777766
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc
Q 042503 269 SVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG 348 (477)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 348 (477)
.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus 102 ---------------------------~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g 154 (501)
T 4g26_A 102 ---------------------------VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 154 (501)
T ss_dssp ---------------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred ---------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC
Confidence 35566666666667777777777777777777777777777777777777777
Q ss_pred cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc---CCCCCHHHHHHHHHHHHH
Q 042503 349 LVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM---SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~ 414 (477)
++++|.++|++|. ..|+.||..+|+.|+.+|++.|++++|.++|++| +..|+..||+.++..|..
T Consensus 155 ~~~~A~~l~~~M~-~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 155 DADKAYEVDAHMV-ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777776 4677777777777777777777777777777777 667777777777666654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-26 Score=218.14 Aligned_cols=419 Identities=9% Similarity=-0.020 Sum_probs=250.9
Q ss_pred chhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHH
Q 042503 33 SNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKA 109 (477)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 109 (477)
....+..+...+.+.|++++|+..|+++.. .++.+|..+..++.+.|++++|.+.|+++.+.+ +.+..++..+..+
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 345677777888888888888888887754 456778888888888888888888888888754 4456677778888
Q ss_pred hhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCC------chHHhHHHHHHHHhcCChH
Q 042503 110 CLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHR------DVIVRNLMIHGFCKKGDVD 183 (477)
Q Consensus 110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~ 183 (477)
+...|++++|...++ .....+.+ ....+..+...+....|...++.+... ........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDF----DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCC----ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 888888888888885 33222221 122233445555667777777776541 1111123333444445555
Q ss_pred HHHHHHHhcCCCChh---hHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCC--------HHHHHHHHHHhhc
Q 042503 184 KGLYLFREMRERSVV---SWNLMISSLGK--------SGRDSEALRLFHEMRDQAFELD--------EATVVAVLPICAR 244 (477)
Q Consensus 184 ~a~~~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~m~~~~~~~~--------~~~~~~l~~~~~~ 244 (477)
.+...+......+.. ....+...+.. .|++++|..+++.+.+.. |+ ...+..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHh
Confidence 554444444432222 22222222211 135666666666665542 22 1134444455566
Q ss_pred cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHH
Q 042503 245 LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVEL 321 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 321 (477)
.|+++.|...++.+.+.. |. ...+..+...+...|++++|...|+++.+ .+..+|..+...+...|++++|...
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 666667777766666665 33 55566666666666777777666666543 3445566666666677777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-C---
Q 042503 322 YEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-S--- 397 (477)
Q Consensus 322 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~--- 397 (477)
++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++ .
T Consensus 333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 77666654 3345566666666667777777777776666322 344556666666677777777777766665 1
Q ss_pred ----CCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 398 ----IRPNAAIWGSLLSSCRTH----------GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 398 ----~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
.......+......+... |++++|...++++++..|.++.++..++.+|.+.|++++|.+.+++.+
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111122334444555555 677777777777777777666677777777777777777777776666
Q ss_pred hC
Q 042503 464 EN 465 (477)
Q Consensus 464 ~~ 465 (477)
+.
T Consensus 490 ~~ 491 (537)
T 3fp2_A 490 IL 491 (537)
T ss_dssp HH
T ss_pred Hh
Confidence 54
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-25 Score=206.89 Aligned_cols=334 Identities=12% Similarity=0.023 Sum_probs=208.1
Q ss_pred CCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHHHH
Q 042503 98 PDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLMIH 174 (477)
Q Consensus 98 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 174 (477)
.+...+..+...+.+.|++++|..+|+.+++..+ .+...+..++.++...|++++|...|+++.+ .+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 3445555566666666666666666666655422 2445555555555555666555555555443 22334444444
Q ss_pred HHHhcCChHHHHHHHHhcCC--CC-h---hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc
Q 042503 175 GFCKKGDVDKGLYLFREMRE--RS-V---VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAV 248 (477)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 248 (477)
+|.+.|++++|.+.|+++.+ |+ . ..+..++..+.. ..+..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCH
Confidence 44445555555544444433 11 1 223333222000 0011112335556666
Q ss_pred cchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 249 DIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQM 325 (477)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 325 (477)
+.|...++.+.+.. |.+..++..++.+|.+.|++++|...|+++.+ .+..+|..++.++...|++++|...++++
T Consensus 160 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666555 55566666666666666777666666666543 34566777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHH------------HHHhhccccHHHHHHHHHHhhhccCCCCC-----hHHHHHHHHHHHhcCCHHH
Q 042503 326 IAKGVSPNKATFVGV------------LTCCAHAGLVEKARELFASMTGLHSIVPN-----LEHYGCMVDVLGRSGCVRE 388 (477)
Q Consensus 326 ~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~ 388 (477)
.... +.+...+..+ ..++...|++++|...|+++.+. .|+ ...+..+..++.+.|++++
T Consensus 238 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 238 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 7653 3344444443 77788888888888888888743 233 3467788888888899999
Q ss_pred HHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH------------HHhcC----
Q 042503 389 AYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI------------YAEGG---- 450 (477)
Q Consensus 389 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g---- 450 (477)
|+..++++ ...| +...|..++.+|...|++++|...++++++..|.++..+..++.+ |...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 99888887 3344 578888888889899999999999999999888888888888843 44445
Q ss_pred -CchHHHHHHHH
Q 042503 451 -RWDDAETLRMW 461 (477)
Q Consensus 451 -~~~~A~~~~~~ 461 (477)
+.+++.+.+++
T Consensus 394 ~~~~~~~~~y~~ 405 (450)
T 2y4t_A 394 AKKQEIIKAYRK 405 (450)
T ss_dssp CCTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 55666777776
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-24 Score=208.90 Aligned_cols=428 Identities=8% Similarity=-0.046 Sum_probs=331.6
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhc
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLN 78 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 78 (477)
+..+...+...|++++|...++.+++.. |.++..+..+..++.+.|++++|++.|+++.+ .+..+|..+...+...
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 4556778889999999999999999987 45788999999999999999999999998765 4567899999999999
Q ss_pred CCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcc--cCcchHHHHHHHHHHhcCChhhHHH
Q 042503 79 GPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGF--ERFGSIRIGVVELYTSCGQMDDGMK 156 (477)
Q Consensus 79 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (477)
|++++|.+.|+.+ .. .|+.. ...+..+...+....|...++.++...+ .+........+..+....+.+.+..
T Consensus 107 g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 9999999999743 32 23322 2223344455566788888888865321 1112223344555677888888888
Q ss_pred HhcccCCCchH---HhHHHHHHHHh--------cCChHHHHHHHHhcCC--CC--------hhhHHHHHHHHHhcCChhH
Q 042503 157 VFDEMSHRDVI---VRNLMIHGFCK--------KGDVDKGLYLFREMRE--RS--------VVSWNLMISSLGKSGRDSE 215 (477)
Q Consensus 157 ~~~~~~~~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~~ 215 (477)
.+......+.. ....+...+.. .|++++|.+.|+++.+ |+ ..++..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 88887763332 33333333222 3588999999999876 33 2257777788899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC
Q 042503 216 ALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP 295 (477)
Q Consensus 216 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (477)
|...++..... .|+...+..+...+...|+++.|...++.+.+.. |.+..++..+...+...|++++|...|+++.
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999986 4567888899999999999999999999999988 7788899999999999999999999999876
Q ss_pred C---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC----
Q 042503 296 R---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP---- 368 (477)
Q Consensus 296 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---- 368 (477)
+ .+...|..+..++...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+.....+
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 4 356788999999999999999999999999875 66678899999999999999999999999874321111
Q ss_pred ChHHHHHHHHHHHhc----------CCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 369 NLEHYGCMVDVLGRS----------GCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
....+..+...+.+. |++++|...|+++ .. +.+...+..++.++...|++++|.+.++++++..|.++
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 122344556677777 9999999999998 33 44568899999999999999999999999999999876
Q ss_pred chHH
Q 042503 437 GNYV 440 (477)
Q Consensus 437 ~~~~ 440 (477)
....
T Consensus 497 ~~~~ 500 (537)
T 3fp2_A 497 EKLQ 500 (537)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=201.20 Aligned_cols=379 Identities=11% Similarity=0.035 Sum_probs=259.1
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHH
Q 042503 51 KYATKIFNQMRN---PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEII 127 (477)
Q Consensus 51 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 127 (477)
..+...|.+... .++..|..++..+.+.|++++|.++|+++.+.. +.+..++..+..++...|++++|...++.++
T Consensus 9 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444554443 345688999999999999999999999999863 5578889999999999999999999999999
Q ss_pred HhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC--Cc-h---HHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHH
Q 042503 128 RSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--RD-V---IVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWN 201 (477)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 201 (477)
+.++. +...+..++.+|.+.|++++|.+.|+++.+ |+ . ..+..+...+.. ..+.
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~ 147 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLR 147 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHH
Confidence 97644 677889999999999999999999999876 33 3 555555444211 1122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc
Q 042503 202 LMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC 281 (477)
Q Consensus 202 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (477)
.+...+...|++++|...|+.+.... +.+...+..+..++...|+++.|...++.+.+.. |.+..++..++..|...
T Consensus 148 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 148 SQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 33444555666666666666665542 3345555566666666666666666666666554 55556666666666666
Q ss_pred CChHHHHHHhccCCC--C-CceeHHHH------------HHHHHhcCCchHHHHHHHHHHHcCCCCC----HHHHHHHHH
Q 042503 282 GILDTARNVFKEIPR--K-NVVSWNAM------------ISGLAFNGRGELGVELYEQMIAKGVSPN----KATFVGVLT 342 (477)
Q Consensus 282 ~~~~~a~~~~~~~~~--~-~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~ 342 (477)
|++++|...|+++.+ | +...+..+ +..+...|++++|..+|+++.+.. +.+ ...+..+..
T Consensus 225 g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICH 303 (450)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 666666666665543 2 22233333 777888899999999999888753 223 346777888
Q ss_pred HhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHH---------
Q 042503 343 CCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSS--------- 411 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~--------- 411 (477)
++.+.|++++|...++++.+. .+.+...|..+..+|...|++++|...|+++ ...|+ ...+..+..+
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 381 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK 381 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence 888999999999999888743 2456788888889999999999999999888 55565 4555555533
Q ss_pred ---HHHcC-----ChHHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHhcCCchHHH
Q 042503 412 ---CRTHG-----HVELAEHAVKE-LINLEPWNSG----------NYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 412 ---~~~~~-----~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A~ 456 (477)
|...| +.+++.+.|++ +++..|++.. .+..+..+|...|+.+++.
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 22333 56778888886 6777765432 4556667777777666543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=177.79 Aligned_cols=304 Identities=11% Similarity=0.011 Sum_probs=156.6
Q ss_pred chHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHH
Q 042503 135 GSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE--R-SVVSWNLMISSLG 208 (477)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~ 208 (477)
...+..+...+...|++++|...|+.+.+ .+...+..+...+...|++++|.+.|+++.+ | +...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44566667777777777777777777654 3455666677777777777777777776654 2 4456667777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHhhccCcccchHHHHHHHHHhCCccchhHHHH
Q 042503 209 KSGRDSEALRLFHEMRDQAFEL----DEATVVAV------------LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGN 272 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 272 (477)
..|++++|...|+++.+. .| +...+..+ ...+...|+++.|...++.+.+.. |.+..++.
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 158 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRE 158 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHH
Confidence 777777777777776654 23 22233222 244455555555555555555554 44444555
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHH---------
Q 042503 273 ALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGV--------- 340 (477)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------- 340 (477)
.+...+...|++++|...++++.+ .+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHH
Confidence 555555555555555555554432 233344444555555555555555555554432 2222222211
Q ss_pred ---HHHhhccccHHHHHHHHHHhhhccCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHH
Q 042503 341 ---LTCCAHAGLVEKARELFASMTGLHSIVPNL----EHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSS 411 (477)
Q Consensus 341 ---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 411 (477)
...+...|++++|...++++.+.. +.+. ..+..+..++...|++++|.+.+++. ...| +...+..++..
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 333444444555555444444211 1111 11223344444444444444444444 2122 33444444444
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 412 CRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
+...|++++|...++++++.+|.++.++..+..+
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4444444444444444444444444444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-22 Score=179.95 Aligned_cols=296 Identities=13% Similarity=0.033 Sum_probs=245.2
Q ss_pred chHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042503 165 DVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPI 241 (477)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 241 (477)
++..+..+...+...|++++|.+.|+++.+ .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456677888889999999999999998865 356688889999999999999999999988763 3366778888899
Q ss_pred hhccCcccchHHHHHHHHHhCCcc---chhHHHHHH------------HHHHHhcCChHHHHHHhccCCC---CCceeHH
Q 042503 242 CARLGAVDIGQWIHSYAESSGLYR---KVVSVGNAL------------VDFYCKCGILDTARNVFKEIPR---KNVVSWN 303 (477)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~ 303 (477)
+...|+++.|...++.+.+.. | .+...+..+ ...+...|++++|...++++.+ .+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence 999999999999999998876 6 666666666 6888999999999999998764 4567788
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHH---------
Q 042503 304 AMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYG--------- 374 (477)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------- 374 (477)
.+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHH
Confidence 88889999999999999999998875 6678889999999999999999999999988532 33333333
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHhc-CCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 375 ---CMVDVLGRSGCVREAYDLIRSM-SIRPNA-----AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 375 ---~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
.+...+.+.|++++|...++++ ...|+. ..+..+..++...|++++|...++++++..|.++..+..++.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 2366788999999999999988 334442 2355677889999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCC
Q 042503 446 YAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~~ 466 (477)
|.+.|++++|...+++.++..
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999998764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=169.29 Aligned_cols=279 Identities=13% Similarity=0.034 Sum_probs=195.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC-
Q 042503 171 LMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLG- 246 (477)
Q Consensus 171 ~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~- 246 (477)
.+...+...|++++|.++|+++.+ .+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhh
Confidence 333344444444444444444432 233344555556666666666666666666542 234455555666666666
Q ss_pred cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHH
Q 042503 247 AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYE 323 (477)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (477)
+++.|...++.+.+.. |.+...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++
T Consensus 106 ~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 106 KNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp CHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666666666655 55666677777777777777777777776653 234566777888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccC-------CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 324 QMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHS-------IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 324 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
+..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+..+|...|++++|...+++.
T Consensus 184 ~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 184 QALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp HHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 888765 56678888888888889999999988888764221 1344568888899999999999999999888
Q ss_pred -CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hcCCch
Q 042503 397 -SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA-EGGRWD 453 (477)
Q Consensus 397 -~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~ 453 (477)
.. +.+...+..+..++...|++++|.+.++++++..|.++..+..++.++. ..|+.+
T Consensus 263 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 263 LVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 33 3356788889999999999999999999999999999999999999884 556543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-21 Score=174.09 Aligned_cols=278 Identities=12% Similarity=-0.019 Sum_probs=205.5
Q ss_pred cCChHHHHH-HHHhcCC-----C--ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccc
Q 042503 179 KGDVDKGLY-LFREMRE-----R--SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDI 250 (477)
Q Consensus 179 ~~~~~~a~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 250 (477)
.|++++|.+ .|++... | +...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|+++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 455555555 5554432 1 23456666667777777777777777766653 3355566666667777777777
Q ss_pred hHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-CceeHHH---------------HHHHHHhc
Q 042503 251 GQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-NVVSWNA---------------MISGLAFN 312 (477)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~ 312 (477)
|...++.+.+.. |.+..++..++..+...|++++|...|+++.+ | +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK--PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777777666 56666777777777777777777777776543 1 1111110 23333488
Q ss_pred CCchHHHHHHHHHHHcCCCC--CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHH
Q 042503 313 GRGELGVELYEQMIAKGVSP--NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAY 390 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (477)
|++++|...++++.+.. +. +..++..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|.
T Consensus 195 ~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999875 33 5889999999999999999999999999853 2556789999999999999999999
Q ss_pred HHHHhc-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------CchHHHHHHHHHhcCCchHHHH
Q 042503 391 DLIRSM-SIR-PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN-----------SGNYVLLSNIYAEGGRWDDAET 457 (477)
Q Consensus 391 ~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~ 457 (477)
..|+++ ... .+...+..++.++...|++++|...++++++..|.+ +.+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999998 333 457899999999999999999999999999988877 7899999999999999999998
Q ss_pred HHHHH
Q 042503 458 LRMWM 462 (477)
Q Consensus 458 ~~~~~ 462 (477)
++++.
T Consensus 352 ~~~~~ 356 (368)
T 1fch_A 352 ADARD 356 (368)
T ss_dssp HHTTC
T ss_pred hHHHH
Confidence 87643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-20 Score=166.71 Aligned_cols=266 Identities=10% Similarity=-0.002 Sum_probs=234.8
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHH
Q 042503 195 RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNAL 274 (477)
Q Consensus 195 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 274 (477)
.+...+..++..+...|++++|..+|+++.+.. +.+...+..++.++...|+++.|...++.+.+.. |.+..++..+
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 96 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAV 96 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHH
Confidence 456678888999999999999999999998774 4455667778888899999999999999999987 7888899999
Q ss_pred HHHHHhcC-ChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccH
Q 042503 275 VDFYCKCG-ILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLV 350 (477)
Q Consensus 275 ~~~~~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 350 (477)
...+...| ++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 99999999 99999999998765 356789999999999999999999999999875 55567777899999999999
Q ss_pred HHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC----------CCCHHHHHHHHHHHHHcCChH
Q 042503 351 EKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI----------RPNAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 351 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~~ 419 (477)
++|...++++.+. .+.+...+..+...+...|++++|...++++ .. +.+..++..++.++...|+++
T Consensus 176 ~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9999999999843 3566788999999999999999999999888 11 334578999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+|...++++++..|.++..+..++.+|.+.|++++|.+.+++.++..
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999887653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-19 Score=171.24 Aligned_cols=365 Identities=10% Similarity=-0.025 Sum_probs=242.8
Q ss_pred CcchHHHHHHHHHh----cCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhc----cCCchhHHHHHHHHHHhcccCcc
Q 042503 64 SVLLFNSMIKAYSL----NGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLG----VGDLRVGQCVHGEIIRSGFERFG 135 (477)
Q Consensus 64 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 135 (477)
++.++..+...|.. .+++++|.+.|++..+.| +...+..+...+.. .+++++|...|+...+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 33444444444444 445555555555554432 33344444444444 455555555555554433 33
Q ss_pred hHHHHHHHHHHh----cCChhhHHHHhcccCC-CchHHhHHHHHHHHh----cCChHHHHHHHHhcCC-CChhhHHHHHH
Q 042503 136 SIRIGVVELYTS----CGQMDDGMKVFDEMSH-RDVIVRNLMIHGFCK----KGDVDKGLYLFREMRE-RSVVSWNLMIS 205 (477)
Q Consensus 136 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~ 205 (477)
..+..|...|.. .+++++|.+.|++..+ .+...+..+...|.. .++.++|.+.|++..+ .+...+..+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444544 4555555555555433 234445555555554 5666677777666544 45556666777
Q ss_pred HHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCcccchHHHHHHHHHhCCccchhHHHHHHHHH
Q 042503 206 SLGK----SGRDSEALRLFHEMRDQAFELDEATVVAVLPICAR----LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDF 277 (477)
Q Consensus 206 ~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (477)
.|.. .+++++|..+|++..+.| +...+..+...+.. .++.++|...++.+.+.+. +..+..+...
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~ 264 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN----SIAQFRLGYI 264 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC----HHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHH
Confidence 7766 677788888887777654 44455555555554 6777778888877776652 3344566777
Q ss_pred HHh----cCChHHHHHHhccCCC-CCceeHHHHHHHHHhc-----CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 278 YCK----CGILDTARNVFKEIPR-KNVVSWNAMISGLAFN-----GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 278 ~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
|.. .+++++|...|++..+ .++..+..+...+... +++++|..++++..+.| +...+..+...+...
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 776 7888888888887765 4556777777777776 89999999999998876 445667777777665
Q ss_pred c---cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cC
Q 042503 348 G---LVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR----SGCVREAYDLIRSMSIRPNAAIWGSLLSSCRT----HG 416 (477)
Q Consensus 348 ~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 416 (477)
| ++++|...|++..+ . .+...+..|...|.. .+++++|.+.|++.-...++..+..+...|.. .+
T Consensus 342 g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~ 417 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVER 417 (490)
T ss_dssp CCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCC
T ss_pred CCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCC
Confidence 5 88999999999985 3 467788888888888 89999999999998223467888889999988 89
Q ss_pred ChHHHHHHHHHHHhcCCC---CCchHHHHHHHHHh
Q 042503 417 HVELAEHAVKELINLEPW---NSGNYVLLSNIYAE 448 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 448 (477)
++++|...|+++.+.+|. ++.+...++.++..
T Consensus 418 d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 418 DYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 999999999999999854 66666666665543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-18 Score=166.21 Aligned_cols=417 Identities=9% Similarity=-0.024 Sum_probs=293.7
Q ss_pred HHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCC
Q 042503 22 HAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--P-SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWP 98 (477)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 98 (477)
++..++.. |.+...|..++.. .+.|++++|+.+|+.+.. | +...|...+..+.+.|++++|.++|+++... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 34444444 4577888888884 778999999999998876 4 4568999999999999999999999999985 47
Q ss_pred CcccHHHHHHHh-hccCCchhHHH----HHHHHHHh-cccC-cchHHHHHHHHHHh---------cCChhhHHHHhcccC
Q 042503 99 DEYTFAPLLKAC-LGVGDLRVGQC----VHGEIIRS-GFER-FGSIRIGVVELYTS---------CGQMDDGMKVFDEMS 162 (477)
Q Consensus 99 ~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 162 (477)
+...|...+... ...|+.+.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 777777666533 34677777765 66666553 4444 44567777766554 677888888888776
Q ss_pred C-Cch---HHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH------HcC---CC
Q 042503 163 H-RDV---IVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMR------DQA---FE 229 (477)
Q Consensus 163 ~-~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~------~~~---~~ 229 (477)
+ |.. ..|..........|. ..+..++. .+.+++..|..++.... +.. ++
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 5 321 222222111100110 01111111 12345566666665422 111 24
Q ss_pred CCH--------HHHHHHHHHhhcc----Ccc----cchHHHHHHHHHhCCccchhHHHHHHHHHHHh-------cCChH-
Q 042503 230 LDE--------ATVVAVLPICARL----GAV----DIGQWIHSYAESSGLYRKVVSVGNALVDFYCK-------CGILD- 285 (477)
Q Consensus 230 ~~~--------~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~- 285 (477)
|+. ..|...+...... ++. ..+..+++++.... |.++.+|..++..+.+ .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 431 3344433322211 222 25677899888876 8889999999998886 68987
Q ss_pred ------HHHHHhccCCC---C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-H-HHHHHHHHHhhccccHHHH
Q 042503 286 ------TARNVFKEIPR---K-NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN-K-ATFVGVLTCCAHAGLVEKA 353 (477)
Q Consensus 286 ------~a~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a 353 (477)
+|..+|++..+ | +...|..++..+.+.|++++|..+|+++.+. +|+ . ..|..++..+.+.|++++|
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHH
Confidence 89999998764 3 4567888999999999999999999999986 443 3 5788888888899999999
Q ss_pred HHHHHHhhhccCCCCChHHHHHHHHH-HHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 354 RELFASMTGLHSIVPNLEHYGCMVDV-LGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
..+|++..+.. +.+...|...+.. +...|+.++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++.
T Consensus 376 ~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 376 RMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 99999998532 2233334332222 34689999999999988 3344 578899999999999999999999999999
Q ss_pred cCCCCCc----hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 431 LEPWNSG----NYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 431 ~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..|.++. .|..++......|+.+.+..+.+++.+.-
T Consensus 454 ~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 454 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp SCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9877666 78888898899999999999999887653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.7e-20 Score=172.59 Aligned_cols=371 Identities=11% Similarity=-0.021 Sum_probs=189.8
Q ss_pred CcchHHHHHHHHHhcCCCchHHHHHHHHHhC-----C---CCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhccc---
Q 042503 64 SVLLFNSMIKAYSLNGPSEEPVKLFALLKNL-----G---IWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFE--- 132 (477)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 132 (477)
....||.|...+...|++++|++.|++..+. + .+....+|..+..++...|++++|...+++..+....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456777777777777777777777765431 1 1112345666666677777777777776666542110
Q ss_pred ---C-cchHHHHHHHHHHhc--CChhhHHHHhcccCC--Cc-hHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHH
Q 042503 133 ---R-FGSIRIGVVELYTSC--GQMDDGMKVFDEMSH--RD-VIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLM 203 (477)
Q Consensus 133 ---~-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 203 (477)
+ ...++..+..++... +++++|...|++..+ |+ ...+..+..++.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~-------------------------- 183 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY-------------------------- 183 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------------------
Confidence 0 112333333333322 245555555554433 21 222222222211
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh----hccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHH
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPIC----ARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYC 279 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 279 (477)
.+...++.++|+..+++..+.. +.+...+..+...+ ...++.+.|...++++.... |....++..+...|.
T Consensus 184 --~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~ 258 (472)
T 4g1t_A 184 --RLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYR 258 (472)
T ss_dssp --HHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHH
T ss_pred --HhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHH
Confidence 1222344444444444444332 11222222222222 12234444444554444444 444444444555555
Q ss_pred hcCChHHHHHHhccCCC--C-CceeHHHHHHHHH-------------------hcCCchHHHHHHHHHHHcCCCCCHHHH
Q 042503 280 KCGILDTARNVFKEIPR--K-NVVSWNAMISGLA-------------------FNGRGELGVELYEQMIAKGVSPNKATF 337 (477)
Q Consensus 280 ~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~m~~~~~~~~~~~~ 337 (477)
..|++++|...|++..+ | +..++..+..+|. ..+.++.|...+++..+.. +.+..++
T Consensus 259 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 337 (472)
T 4g1t_A 259 RKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVC 337 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCH
T ss_pred HcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhh
Confidence 55555555555544432 1 2223333332221 1233567888888887765 5566678
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhccCCCCCh--HHHHHHHH-HHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHH
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLHSIVPNL--EHYGCMVD-VLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCR 413 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~ 413 (477)
..+..++...|++++|+..|++..+ ....+.. ..+..+.. .+...|++++|+..|++. .+.|+......
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~------ 410 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK------ 410 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH------
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH------
Confidence 8889999999999999999999874 3222211 12333332 234778999999999988 66676543322
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCCccC
Q 042503 414 THGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPGQSLI 476 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~s~~ 476 (477)
....+..++++.++.+|.++.++..++.+|...|++++|++.+++.++.|.......+|+
T Consensus 411 ---~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 411 ---MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ---HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 234566778888999999999999999999999999999999999999987777777775
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-18 Score=162.77 Aligned_cols=364 Identities=12% Similarity=0.015 Sum_probs=301.7
Q ss_pred chHHHHHHHHHhCCCCCCcccHHHHHHHhhc----cCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHh----cCChhh
Q 042503 82 EEPVKLFALLKNLGIWPDEYTFAPLLKACLG----VGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTS----CGQMDD 153 (477)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 153 (477)
..+++.++...+.| +...+..+...+.. .+++++|...|+...+.| +...+..|...|.. .+++++
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 33456666665544 67777777777776 899999999999998875 56678888888988 899999
Q ss_pred HHHHhcccCC-CchHHhHHHHHHHHh----cCChHHHHHHHHhcCC-CChhhHHHHHHHHHh----cCChhHHHHHHHHH
Q 042503 154 GMKVFDEMSH-RDVIVRNLMIHGFCK----KGDVDKGLYLFREMRE-RSVVSWNLMISSLGK----SGRDSEALRLFHEM 223 (477)
Q Consensus 154 A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m 223 (477)
|.+.|++..+ .+...+..+...|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++|+.+|++.
T Consensus 98 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 98 AVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 9999998766 466777888888888 8899999999999876 466788888888887 78999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHhhc----cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHh----cCChHHHHHHhccCC
Q 042503 224 RDQAFELDEATVVAVLPICAR----LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK----CGILDTARNVFKEIP 295 (477)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~ 295 (477)
.+.| +...+..+...+.. .++.++|...+++..+.+. +..+..+...|.. .+++++|...|++..
T Consensus 178 ~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 178 AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGD----ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 8875 66777777777776 8999999999999988762 3456778888886 889999999999876
Q ss_pred C-CCceeHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc-----ccHHHHHHHHHHhhhccC
Q 042503 296 R-KNVVSWNAMISGLAF----NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA-----GLVEKARELFASMTGLHS 365 (477)
Q Consensus 296 ~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~ 365 (477)
+ .++..+..+...+.. .+++++|+.+|++..+.| +...+..+...+... +++++|...|++..+ .
T Consensus 251 ~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~- 325 (490)
T 2xm6_A 251 EQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q- 325 (490)
T ss_dssp TTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T-
T ss_pred HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c-
Confidence 5 466677778888887 899999999999998775 455677777777776 899999999999985 3
Q ss_pred CCCChHHHHHHHHHHHhcC---CHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCch
Q 042503 366 IVPNLEHYGCMVDVLGRSG---CVREAYDLIRSMSIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
.+...+..+...|...| ++++|+++|++.-...++..+..+...|.. .+++++|...++++.+.+ ++.+
T Consensus 326 --~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a 401 (490)
T 2xm6_A 326 --GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA 401 (490)
T ss_dssp --TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred --CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence 35567888888888766 889999999998223578899999999998 899999999999999875 4889
Q ss_pred HHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 042503 439 YVLLSNIYAE----GGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 439 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 467 (477)
+..++.+|.+ .+++++|..++++..+.+.
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999998 8999999999999998763
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-20 Score=165.62 Aligned_cols=280 Identities=9% Similarity=0.056 Sum_probs=115.8
Q ss_pred hcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHH
Q 042503 46 TLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGE 125 (477)
Q Consensus 46 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 125 (477)
+.|++++|.+.++++..| .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999655 4899999999999999999999965 25777999999999999999999998887
Q ss_pred HHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHH
Q 042503 126 IIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMIS 205 (477)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 205 (477)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 7764 44577888999999999999998888864 77779999999999999999999999987 47999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChH
Q 042503 206 SLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILD 285 (477)
Q Consensus 206 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (477)
++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-...++..|.+.|+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHH
Confidence 999999999999999987 27788888899999999888885544331 122222345777788888888
Q ss_pred HHHHHhccCCCC---CceeHHHHHHHHHhcCCchHHHHHHHHHHH-cCCCC------CHHHHHHHHHHhhccccHHHHHH
Q 042503 286 TARNVFKEIPRK---NVVSWNAMISGLAFNGRGELGVELYEQMIA-KGVSP------NKATFVGVLTCCAHAGLVEKARE 355 (477)
Q Consensus 286 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-~~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 355 (477)
+|..+++....- ....|+-+.-++++- ++++..+.++.... .+++| +...|.-+...|.+.++++.|..
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 888888776543 334566665555543 33444333333222 22222 23445666666666677776655
Q ss_pred H
Q 042503 356 L 356 (477)
Q Consensus 356 ~ 356 (477)
.
T Consensus 304 t 304 (449)
T 1b89_A 304 T 304 (449)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-20 Score=168.67 Aligned_cols=259 Identities=12% Similarity=-0.046 Sum_probs=197.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHH
Q 042503 197 VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVD 276 (477)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (477)
...+..+...+.+.|++++|...|+++.... +.+...+..+..++...|+++.|...++++.+.. |.+..++..++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 3446666666777777777777777766653 3355666666677777777777777777777665 666667777777
Q ss_pred HHHhcCChHHHHHHhccCCCC-------------CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 042503 277 FYCKCGILDTARNVFKEIPRK-------------NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSP--NKATFVGVL 341 (477)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~ 341 (477)
.|...|++++|...|+++.+. ....+..+...+...|++++|..+++++.+.. +. +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 777777777777777766541 12234455788889999999999999999875 33 688999999
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChH
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 419 (477)
.++...|++++|...|+++.+. .+.+..+|..+..+|...|++++|+..|+++ ...| +..++..++.+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999853 2556889999999999999999999999998 4444 4789999999999999999
Q ss_pred HHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 420 LAEHAVKELINLEPW------------NSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
+|...++++++..|. +..+|..++.++...|+.+.|....++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998866 367899999999999999999887754
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-17 Score=165.46 Aligned_cols=379 Identities=11% Similarity=0.079 Sum_probs=289.7
Q ss_pred chhHHHhHHHHHhhcCChhHHHHHhccCCC-CC-----cchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHH
Q 042503 33 SNLILAHFVSVCGTLNEIKYATKIFNQMRN-PS-----VLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPL 106 (477)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 106 (477)
+|.--...+..|...|.+.+|+++++++.- |+ ....+.++.+..+. +..+..+..+++.... ..-+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-------~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-------APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-------HHHH
Confidence 445556677888888999999999988763 22 34566677777766 5566666666554321 3447
Q ss_pred HHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHH
Q 042503 107 LKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGL 186 (477)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 186 (477)
...+...|.+++|..+|++.. ......+.+ +-..|++++|.++.++.. +..+|..+..++...|++++|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 778888999999999998852 111222222 227789999999998774 4667889999999999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccc
Q 042503 187 YLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRK 266 (477)
Q Consensus 187 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 266 (477)
+.|.+. .|...|..++.++.+.|++++|.+.|....+.. +++...+.++.+|++.++++....+. + .+
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~----~~ 1193 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N----GP 1193 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h----CC
Confidence 999775 667788889999999999999999999877654 33333345888899998887544432 1 33
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Q 042503 267 VVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH 346 (477)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 346 (477)
+...+..+...|...|++++|..+|..+ ..|..+..++.+.|++++|.+.+++. .+..+|..+..+|..
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 4455667999999999999999999986 48999999999999999999999886 356889999999999
Q ss_pred cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHc--CChHHHH
Q 042503 347 AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTH--GHVELAE 422 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~--~~~~~a~ 422 (477)
.|++..|......+ ..++..+..++..|.+.|.+++|+++++.. +..|.. ..|..+...+.+. ++..++.
T Consensus 1263 ~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999998877543 346667889999999999999999999877 655544 4666666666654 4666777
Q ss_pred HHHHHHHhcCC-----CCCchHHHHHHHHHhcCCchHHHHH
Q 042503 423 HAVKELINLEP-----WNSGNYVLLSNIYAEGGRWDDAETL 458 (477)
Q Consensus 423 ~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (477)
+.|..-....| .+...|..+...|.+.|+++.|...
T Consensus 1337 k~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 77776666555 5678899999999999999999843
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-17 Score=161.91 Aligned_cols=411 Identities=12% Similarity=0.103 Sum_probs=304.7
Q ss_pred HHHHHhhcCCCchhHhHHHHHHHHhh--cccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCC
Q 042503 4 KILRLLHGRNTRTHLTQIHAHFLRHK--LHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPS 81 (477)
Q Consensus 4 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (477)
..++++...|.+.+|..+++.++-.+ +..+....+.++....+. +..+..+..++....+ ...+...+...|.+
T Consensus 990 ~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lgly 1065 (1630)
T 1xi4_A 990 VTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELF 1065 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCH
Confidence 46788999999999999999998442 113445666676666665 4455555555544322 45578888999999
Q ss_pred chHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhccc
Q 042503 82 EEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEM 161 (477)
Q Consensus 82 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (477)
++|..+|++... .....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|...|.+.
T Consensus 1066 EEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1066 EEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred HHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 999999998631 1222233332 678899999988865 25778889999999999999999999775
Q ss_pred CCCchHHhHHHHHHHHhcCChHHHHHHHHhcCC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 162 SHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE--RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVL 239 (477)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 239 (477)
.|...|..++.++.+.|++++|.+.|....+ ++....+.++.+|++.+++++...+. . .++...+..+.
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 5667788899999999999999999987664 44444556999999999988644432 2 45667777899
Q ss_pred HHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHH
Q 042503 240 PICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGV 319 (477)
Q Consensus 240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 319 (477)
..|...|+++.|..+|..+ ..|..++..|.+.|++++|.+.+++. .+..+|..+..+|...|++..|.
T Consensus 1203 d~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~ 1270 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQ 1270 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHH
Confidence 9999999999999999875 36788999999999999999999987 46688998889999999988887
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh--cCCHHHHHHHHHhc-
Q 042503 320 ELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR--SGCVREAYDLIRSM- 396 (477)
Q Consensus 320 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~- 396 (477)
..... +..+...+..++..|.+.|.+++|+.+++...... +-....|+.|...|.+ -++..++.+.|..-
T Consensus 1271 ~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le--raH~gmftELaiLyaKy~peklmEhlk~f~~ri 1343 (1630)
T 1xi4_A 1271 MCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRV 1343 (1630)
T ss_pred HHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 76553 34456677788999999999999999998887422 3344566666666654 44666666666554
Q ss_pred CCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHh------------cCCCCCchHHHHHHHHHhcC--------
Q 042503 397 SIRP------NAAIWGSLLSSCRTHGHVELAEHAVKELIN------------LEPWNSGNYVLLSNIYAEGG-------- 450 (477)
Q Consensus 397 ~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g-------- 450 (477)
.++| +...|..+...|.+.|+++.|....-+... ..+.+++.|...+..|...+
T Consensus 1344 ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl 1423 (1630)
T 1xi4_A 1344 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLL 1423 (1630)
T ss_pred ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHH
Confidence 4433 456788888889999999988843322211 13566778888888777666
Q ss_pred -------CchHHHHHHH
Q 042503 451 -------RWDDAETLRM 460 (477)
Q Consensus 451 -------~~~~A~~~~~ 460 (477)
+.+.+.++++
T Consensus 1424 ~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1424 MVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHhhhcCChHHHHHHHH
Confidence 6666666665
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-19 Score=156.62 Aligned_cols=346 Identities=11% Similarity=0.040 Sum_probs=174.4
Q ss_pred hcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHH
Q 042503 10 HGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFA 89 (477)
Q Consensus 10 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 89 (477)
...|++++|.+.++.+ +++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3668899999998887 33469999999999999999999999764 677799999999999999999999888
Q ss_pred HHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHh
Q 042503 90 LLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVR 169 (477)
Q Consensus 90 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 169 (477)
..++. .+++.+.+.++.++.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence 77763 4667889999999999999999998885 367779999999999999999999999987 478
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccc
Q 042503 170 NLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVD 249 (477)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 249 (477)
..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|...... +..++.....++..|.+.|.++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHH
Confidence 999999999999999999999994 889999999999999999999665543 2334444667889999999999
Q ss_pred chHHHHHHHHHhCCccchhHHHHHHHHHHHhc--CChHHHHHHhccCCC--------CCceeHHHHHHHHHhcCCchHHH
Q 042503 250 IGQWIHSYAESSGLYRKVVSVGNALVDFYCKC--GILDTARNVFKEIPR--------KNVVSWNAMISGLAFNGRGELGV 319 (477)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~ 319 (477)
++..+++...... +.....|+.+.-+|++- ++..+.++.|..-.. .+...|..+.-.|...++++.|.
T Consensus 225 Eai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 225 ELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 9999999999777 78888888888888764 466677777765443 35788999999999999999887
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 042503 320 ELYEQMIAK-GVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMS 397 (477)
Q Consensus 320 ~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 397 (477)
.. |.+. ...-+...|.-++.--....-+-+|...+= +. .|. ..+.|+.++...=+...+.++|++.+
T Consensus 303 ~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~---~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~ 370 (449)
T 1b89_A 303 IT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKVK 370 (449)
T ss_dssp HH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHTT
T ss_pred HH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc---CHH--HHHHHHHHHHhccCcHHHHHHHHHcC
Confidence 63 4433 222334444444433222222333444332 11 233 46667777777777777777777774
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-19 Score=160.80 Aligned_cols=260 Identities=12% Similarity=-0.054 Sum_probs=192.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHH
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFY 278 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (477)
.+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. |.+..++..+...+
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSH 99 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHH
Confidence 34455555556666666666666655542 2244455555555666666666666666666554 55555666666666
Q ss_pred HhcCChHHHHHHhccCCC--C-CceeHHHH--------------HH-HHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHH
Q 042503 279 CKCGILDTARNVFKEIPR--K-NVVSWNAM--------------IS-GLAFNGRGELGVELYEQMIAKGVSPNKATFVGV 340 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 340 (477)
...|++++|...++++.+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 666666666666665543 1 22222222 22 3667889999999999999875 5678899999
Q ss_pred HHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCCh
Q 042503 341 LTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHV 418 (477)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~ 418 (477)
..++...|++++|...++++.+. .+.+...+..+...+...|++++|.+.|+++ .. +.+...+..++..+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999843 2556788999999999999999999999998 33 44578899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 419 ELAEHAVKELINLEPW------------NSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
++|...++++++..|. ++..+..++.++.+.|++++|..++++.++
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999999999998 688999999999999999999999875543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.4e-18 Score=148.04 Aligned_cols=267 Identities=11% Similarity=-0.008 Sum_probs=188.1
Q ss_pred hcCChHHHHHHHHhcCCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHH
Q 042503 178 KKGDVDKGLYLFREMRERS----VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQW 253 (477)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 253 (477)
..|+++.|+..+++....+ ......+.++|...|+++.|+..++. .-+|+..++..+...+...++.+.|.+
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 3455555555554433311 11233345555566666655554432 124444555555555566666666666
Q ss_pred HHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC
Q 042503 254 IHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN 333 (477)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 333 (477)
.++.+...+..|.++.++..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|...++++.+.. |+
T Consensus 87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~ 162 (291)
T 3mkr_A 87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--ED 162 (291)
T ss_dssp HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cC
Confidence 6666555543266677778888999999999999999998 4567788899999999999999999999999874 44
Q ss_pred HH-HH--HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHH
Q 042503 334 KA-TF--VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSL 408 (477)
Q Consensus 334 ~~-~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 408 (477)
.. .. ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|++. ...| +..++..+
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l 240 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 22 11 22334445669999999999999854 4678889999999999999999999999998 4444 66789999
Q ss_pred HHHHHHcCChHH-HHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHH
Q 042503 409 LSSCRTHGHVEL-AEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETL 458 (477)
Q Consensus 409 ~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 458 (477)
+..+...|+.++ +.++++++++.+|+++.+.. ...+.+.++++..-
T Consensus 241 ~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 241 VVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHH
Confidence 999999999876 67899999999999876543 45555555555443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=165.03 Aligned_cols=276 Identities=11% Similarity=0.068 Sum_probs=191.3
Q ss_pred cCChhhHHH-HhcccCC-----C--chHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHH
Q 042503 148 CGQMDDGMK-VFDEMSH-----R--DVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEA 216 (477)
Q Consensus 148 ~g~~~~A~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a 216 (477)
.|++++|.. .+++... | +...+..+...+.+.|++++|...|+++.+ .+..++..+...+...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555555 5554332 1 233455556666666666666666666543 2444566666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHH----------------HHHHHHHh
Q 042503 217 LRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGN----------------ALVDFYCK 280 (477)
Q Consensus 217 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~ 280 (477)
...|+++.+.. +.+...+..+..++...|+++.|...++.+.... |.+...+. .+...+ .
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 193 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S 193 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHH-H
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence 66666666553 3355566666666666666666666666666655 33332222 233333 8
Q ss_pred cCChHHHHHHhccCCC--C---CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHH
Q 042503 281 CGILDTARNVFKEIPR--K---NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARE 355 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 355 (477)
.|++++|...|+++.+ | +..++..+...+...|++++|...++++.... +.+..++..+..++...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8889999998888764 3 35678888999999999999999999998875 5678889999999999999999999
Q ss_pred HHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC------------CHHHHHHHHHHHHHcCChHHHH
Q 042503 356 LFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP------------NAAIWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~~~~~~a~ 422 (477)
.|+++.+.. +.+...+..+..+|.+.|++++|...|+++ ...| ...+|..++.++...|++++|.
T Consensus 273 ~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 273 AYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 999988532 456788999999999999999999999888 2222 1678999999999999999999
Q ss_pred HHHHHHHh
Q 042503 423 HAVKELIN 430 (477)
Q Consensus 423 ~~~~~~~~ 430 (477)
.++++.++
T Consensus 351 ~~~~~~l~ 358 (368)
T 1fch_A 351 AADARDLS 358 (368)
T ss_dssp HHHTTCHH
T ss_pred HhHHHHHH
Confidence 98876543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-19 Score=159.41 Aligned_cols=233 Identities=11% Similarity=0.020 Sum_probs=197.5
Q ss_pred CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHH
Q 042503 231 DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMIS 307 (477)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~ 307 (477)
+...+..+...+.+.|+++.|...++.+.+.. |.+..++..++..|...|++++|+..|+++.+ .+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 44558888889999999999999999999998 88899999999999999999999999998764 45678999999
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCH----------HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHH
Q 042503 308 GLAFNGRGELGVELYEQMIAKGVSPNK----------ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMV 377 (477)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~~~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (477)
++...|++++|...++++.+.. +.+. ..+..+..++...|++++|...++++.+.....++..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998863 2122 2233457889999999999999999986432223688999999
Q ss_pred HHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 042503 378 DVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDA 455 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (477)
..|...|++++|++.|+++ .. +.+..+|..++.+|...|++++|+..++++++..|.++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999998 33 446789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 042503 456 ETLRMWMRENN 466 (477)
Q Consensus 456 ~~~~~~~~~~~ 466 (477)
...+++.++..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998753
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-17 Score=154.15 Aligned_cols=407 Identities=9% Similarity=0.022 Sum_probs=281.8
Q ss_pred HHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchHHHHHHHH-HhcC
Q 042503 3 RKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNSMIKAY-SLNG 79 (477)
Q Consensus 3 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~-~~~~ 79 (477)
..++. +...|++++|..+++.+++.. |.+...|..++..+.+.|++++|+.+|++... |++..|...+... ...|
T Consensus 17 ~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~ 94 (530)
T 2ooe_A 17 SILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKG 94 (530)
T ss_dssp HHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcc
Confidence 34555 356899999999999999875 56788999999999999999999999999876 8777888777543 3568
Q ss_pred CCchHHH----HHHHHHhC-CCCC-CcccHHHHHHHhhc---------cCCchhHHHHHHHHHHhcccCcchHHHHHHHH
Q 042503 80 PSEEPVK----LFALLKNL-GIWP-DEYTFAPLLKACLG---------VGDLRVGQCVHGEIIRSGFERFGSIRIGVVEL 144 (477)
Q Consensus 80 ~~~~a~~----~~~~~~~~-~~~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (477)
+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|+..++....+....|......
T Consensus 95 ~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~ 174 (530)
T 2ooe_A 95 KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKY 174 (530)
T ss_dssp TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHH
Confidence 8888776 77766543 4433 44566666665543 68899999999999873111112333333222
Q ss_pred HHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHh-------cC------CCC--------hhhHHHH
Q 042503 145 YTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFRE-------MR------ERS--------VVSWNLM 203 (477)
Q Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~------~~~--------~~~~~~l 203 (477)
....|. ..+..++.. +.++++.|..++.. +. .|+ ...|...
T Consensus 175 e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 175 EEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp HHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 111111 111111111 12333444443332 11 111 1344444
Q ss_pred HHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-------cCccc-------chHHHHHHHHHh
Q 042503 204 ISSLGKS----GRD----SEALRLFHEMRDQAFELDEATVVAVLPICAR-------LGAVD-------IGQWIHSYAESS 261 (477)
Q Consensus 204 ~~~~~~~----~~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~ 261 (477)
+...... ++. +.+..+|++..... +-+...|......+.+ .|+++ .|..+++.+.+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~ 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH
Confidence 4333222 222 36777888877752 4466777777776664 68876 889999998873
Q ss_pred CCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CC-c-eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHH
Q 042503 262 GLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KN-V-VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATF 337 (477)
Q Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 337 (477)
-. |.+..+|..++..+.+.|++++|..+|+++.+ |+ . ..|..++..+.+.|++++|..+|++..+.. +.+...+
T Consensus 316 ~~-p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~ 393 (530)
T 2ooe_A 316 LL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVY 393 (530)
T ss_dssp TC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHH
T ss_pred hC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHH
Confidence 22 77888999999999999999999999998764 32 2 478888888888999999999999998763 3333333
Q ss_pred HHHHHH-hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC---CCC--HHHHHHHHH
Q 042503 338 VGVLTC-CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI---RPN--AAIWGSLLS 410 (477)
Q Consensus 338 ~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~--~~~~~~l~~ 410 (477)
...... +...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++. .. .|+ ...|...+.
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 332222 335899999999999988543 456788999999999999999999999998 22 332 448888888
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCC
Q 042503 411 SCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
.....|+.+.+..+.+++.+..|.
T Consensus 472 ~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCch
Confidence 888999999999999999998874
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-18 Score=149.99 Aligned_cols=247 Identities=9% Similarity=0.050 Sum_probs=203.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELDE--ATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC 281 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (477)
++.....|++..|+..++..... .|+. .....+.+++...|+++.|...++. .. ++...++..+...+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~--~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS--APELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS--CHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC--ChhHHHHHHHHHHHcCC
Confidence 45567789999999998876543 3443 3456678899999999998876644 22 77888889999999999
Q ss_pred CChHHHHHHhccCCC----C-CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHH
Q 042503 282 GILDTARNVFKEIPR----K-NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 282 ~~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (477)
++.++|++.++++.. | ++..+..+..++...|++++|+..+++ +.+...+..++..+.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999998642 4 455677778899999999999999987 56788999999999999999999999
Q ss_pred HHHhhhccCCCCChHHH---HHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 357 FASMTGLHSIVPNLEHY---GCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 357 ~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
|+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...++.++.++.+.|++++|+..++++++.
T Consensus 153 l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999853 3543211 22334455669999999999999 44567789999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHhcCCchH-HHHHHHHHHhCC
Q 042503 432 EPWNSGNYVLLSNIYAEGGRWDD-AETLRMWMRENN 466 (477)
Q Consensus 432 ~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 466 (477)
+|.++.++..++.++...|+.++ +.++++++++..
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999976 578999888653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-17 Score=155.89 Aligned_cols=381 Identities=8% Similarity=-0.035 Sum_probs=227.9
Q ss_pred cchhHHHhHHHHHhhcCChhHHHHHhccCCC-----------C-CcchHHHHHHHHHhcCCCchHHHHHHHHHhCC----
Q 042503 32 QSNLILAHFVSVCGTLNEIKYATKIFNQMRN-----------P-SVLLFNSMIKAYSLNGPSEEPVKLFALLKNLG---- 95 (477)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 95 (477)
.....|+.+..++...|++++|++.|++..+ | ...+|+.+..+|...|++++|...+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 3456789999999999999999999986532 2 34679999999999999999999999886531
Q ss_pred CC--C-CcccHHHHHHHhh--ccCCchhHHHHHHHHHHhcccCcchHHHHHHHH---HHhcCChhhHHHHhcccCC---C
Q 042503 96 IW--P-DEYTFAPLLKACL--GVGDLRVGQCVHGEIIRSGFERFGSIRIGVVEL---YTSCGQMDDGMKVFDEMSH---R 164 (477)
Q Consensus 96 ~~--p-~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~---~ 164 (477)
-+ + ...++.....++. ..+++++|...|++.++..+. +...+..+..+ +...++.++|++.+++..+ .
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 11 1 2234544444444 346799999999999986543 44455555544 3455777888888876654 3
Q ss_pred chHHhHHHHHHHHh----cCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 042503 165 DVIVRNLMIHGFCK----KGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVA 237 (477)
Q Consensus 165 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 237 (477)
+..++..+...+.. .|+.++|.+.+++... .+..++..+...+...|++++|...+++..+.. +-+...+..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 44455555444433 4667788888877653 455677788888888888888888888877653 223444544
Q ss_pred HHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCC
Q 042503 238 VLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGR 314 (477)
Q Consensus 238 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 314 (477)
+..++...+... .... . ..........+.++.|...|++..+ .+...+..+...+...|+
T Consensus 287 lg~~y~~~~~~~---------~~~~--~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNLR--E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHH---------HHC--------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh---------hhHH--H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 444442211100 0000 0 0011111122335667777766543 456789999999999999
Q ss_pred chHHHHHHHHHHHcCCCCCHH--HHHHHHH-HhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 042503 315 GELGVELYEQMIAKGVSPNKA--TFVGVLT-CCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 315 ~~~a~~~~~~m~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 391 (477)
+++|...|++..+....+... .+..+.. .....|++++|+..|++..+ +.|+....... ...+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHH
Confidence 999999999998875433321 2222222 23577999999999999884 24443322222 233344
Q ss_pred HHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 042503 392 LIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLS 443 (477)
Q Consensus 392 ~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (477)
++++. ..+.+..+|..++.+|...|++++|++.|+++++.+|.+|.+...++
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 44444 22445679999999999999999999999999999998888776654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=154.71 Aligned_cols=272 Identities=7% Similarity=-0.008 Sum_probs=166.4
Q ss_pred cchHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHH
Q 042503 134 FGSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSL 207 (477)
Q Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 207 (477)
+...+..+...+...|++++|..+|+++.+ .+...+..+...+...|++++|.+.|+++.+ .+..++..+...+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 344455666667777777777777776643 3445555666666666666666666666543 2444566666666
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHH-HH-HHHhcCChH
Q 042503 208 GKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNAL-VD-FYCKCGILD 285 (477)
Q Consensus 208 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~ 285 (477)
...|++++|...++++.... +.+...+..+...+ +... ....+ .. .+...|+++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~-~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDID-DLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC-------------------------------------------CCTTSHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHH-HHHHHHHhHHHHHcccHH
Confidence 66666666666666665542 11111111110000 0000 00001 11 244555566
Q ss_pred HHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh
Q 042503 286 TARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG 362 (477)
Q Consensus 286 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (477)
+|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666555443 244566667777777777777777777777664 55677777788888888888888888888764
Q ss_pred ccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 363 LHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-------------AAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
.. +.+...+..+...|...|++++|.+.++++ ...|+ ...+..+..++...|++++|..+++++
T Consensus 235 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 IN--PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22 445667777888888888888888888777 33333 567788888888888888888888766
Q ss_pred HhcC
Q 042503 429 INLE 432 (477)
Q Consensus 429 ~~~~ 432 (477)
++..
T Consensus 313 l~~~ 316 (327)
T 3cv0_A 313 VEPF 316 (327)
T ss_dssp SHHH
T ss_pred HHhc
Confidence 5543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-17 Score=136.68 Aligned_cols=196 Identities=11% Similarity=0.031 Sum_probs=156.5
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
|+++..+..+...+.+.|++++|...|++..+ .++..+..+..++.+.|++++|+..+++..+.. |.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 56667777888888888888888888887655 345678888888899999999999999998875 66788888889
Q ss_pred HHhhcc-----------ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHH
Q 042503 342 TCCAHA-----------GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLL 409 (477)
Q Consensus 342 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 409 (477)
.++... |++++|+..+++..+.. +.+...+..+..+|...|++++|+..|++. ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 999998 99999999999998532 456788999999999999999999999998 2227889999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
.++...|++++|+..++++++.+|.++..+..++.++.+.|++++|...+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999987653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-17 Score=139.10 Aligned_cols=229 Identities=10% Similarity=-0.043 Sum_probs=146.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHH
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDF 277 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (477)
..+..+...+...|++++|...|++..+.. .+...+..+..++...|+++.|...+..+.+.. |.....+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~----- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMRADYK----- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHH-----
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccccchH-----
Confidence 356667777777777888877777777665 566666666677777777777777776666543 21100000
Q ss_pred HHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHH
Q 042503 278 YCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
.....|..+...+...|++++|...++++... .|+. ..+...|++++|...+
T Consensus 77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence 00233445555556666666666666666554 2332 2344556677777777
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 358 ASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-S-IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
+++... .+.+...+..+...+...|++++|...+++. . .+.+...+..++.++...|++++|...++++++..|.+
T Consensus 129 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 206 (258)
T 3uq3_A 129 EAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 206 (258)
T ss_dssp HHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence 776631 1334456666777777777777777777776 2 23345677777777777777777777777777777777
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+..+..++.+|.+.|++++|...+++.++.
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777777777777777777777777777654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.7e-16 Score=143.80 Aligned_cols=379 Identities=10% Similarity=0.000 Sum_probs=178.8
Q ss_pred HHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCCh---hHHHHHhccCCCCCcchHHHHHHHHHhcC--
Q 042503 5 ILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEI---KYATKIFNQMRNPSVLLFNSMIKAYSLNG-- 79 (477)
Q Consensus 5 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-- 79 (477)
+...+...|++++|.++++...+.| ++..+..+..+|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3444555666666666666666554 223344444555555555 66666666655555555555555444443
Q ss_pred ---CCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHH
Q 042503 80 ---PSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMK 156 (477)
Q Consensus 80 ---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 156 (477)
++++|.+.|++..+.| +...+..+...+...+..+.+.+.++.+.......+......+...|...+.++++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~-- 160 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH-- 160 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG--
T ss_pred CCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC--
Confidence 4456666666666544 22245555555544433332222222222211111233333333334333332222
Q ss_pred HhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHH
Q 042503 157 VFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSG---RDSEALRLFHEMRDQAFELDEA 233 (477)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~ 233 (477)
.+.+..++......+...+..+...|...| ++++|+..|+...+.| .++..
T Consensus 161 -------------------------~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~ 214 (452)
T 3e4b_A 161 -------------------------LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQ 214 (452)
T ss_dssp -------------------------HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHH
T ss_pred -------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHH
Confidence 233344444444555557777777777777 7777777777777765 33333
Q ss_pred HHHHHHHHhhcc----CcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHH-
Q 042503 234 TVVAVLPICARL----GAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISG- 308 (477)
Q Consensus 234 ~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~- 308 (477)
.+..+...|... ++.++|...++.+. ..++..+..+...
T Consensus 215 ~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa------------------------------------~g~~~a~~~Lg~~~ 258 (452)
T 3e4b_A 215 RVDSVARVLGDATLGTPDEKTAQALLEKIA------------------------------------PGYPASWVSLAQLL 258 (452)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG------------------------------------GGSTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc------------------------------------CCCHHHHHHHHHHH
Confidence 333333333322 34444444444443 2233344444444
Q ss_pred H--HhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc-----cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH
Q 042503 309 L--AFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG-----LVEKARELFASMTGLHSIVPNLEHYGCMVDVLG 381 (477)
Q Consensus 309 ~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (477)
+ ...+++++|..+|++..+.| +...+..+...|. .| ++++|...|++.. +-+...+..|...|.
T Consensus 259 ~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 259 YDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYR 329 (452)
T ss_dssp HHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 2 24566667777777666655 4445555555554 33 6777777776554 334555556665555
Q ss_pred h----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHH--HhcCC
Q 042503 382 R----SGCVREAYDLIRSMSIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEPWNSGNYVLLSNIY--AEGGR 451 (477)
Q Consensus 382 ~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~ 451 (477)
. ..++++|.++|++.-..-+......+...|.. .+|.++|...|+++.+.++. .+...+..+. ...++
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~ 407 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQ 407 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHH
Confidence 4 33677777777766222233444555555543 34677777777777766643 2223333332 22334
Q ss_pred chHHHHHHHHHHh
Q 042503 452 WDDAETLRMWMRE 464 (477)
Q Consensus 452 ~~~A~~~~~~~~~ 464 (477)
..+|..+.++-.+
T Consensus 408 ~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 408 RAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5556555555433
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.3e-16 Score=133.04 Aligned_cols=190 Identities=14% Similarity=0.089 Sum_probs=158.4
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC--CCC----HHHHH
Q 042503 267 VVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV--SPN----KATFV 338 (477)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~~~ 338 (477)
....+..+...+...|++++|...|+++.+ .+...|..+..++...|++++|...+++..+... .++ ..++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 445567778888888888888888776543 5667788888899999999999999999887531 112 57888
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcC
Q 042503 339 GVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHG 416 (477)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~ 416 (477)
.+..++...|++++|...|+++.+. .|+. ..+...|++++|...++++ ...|+ ...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999852 3443 4566778899999999998 44444 468889999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 417 HVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
++++|...++++++..|.++.++..++.+|.+.|++++|...+++.++..
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999998754
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-16 Score=135.04 Aligned_cols=241 Identities=12% Similarity=-0.020 Sum_probs=181.4
Q ss_pred hcCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChH
Q 042503 209 KSGRDSEALRLFHEMRDQAFE---LDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILD 285 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 285 (477)
..|++++|+..|+++.+.... .+...+..+...+...|+++.|...++.+.+.. |.+..++..++..+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHH
Confidence 346677777777777765321 134556667777777888888888888877776 677778888888888888888
Q ss_pred HHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh
Q 042503 286 TARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG 362 (477)
Q Consensus 286 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (477)
+|...|+++.+ .+...+..+...+...|++++|...++++.+.. |+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888887764 356788888999999999999999999998864 3333344444555777999999999988774
Q ss_pred ccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 363 LHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
.. +++...+ .++..+...++.++|.+.+++. ...|+ ...+..++..+...|++++|...++++++.+|.+.
T Consensus 173 ~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 173 KS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred cC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 32 3444444 4677788888899999999888 43332 47888999999999999999999999999998764
Q ss_pred chHHHHHHHHHhcCCchHHHHHH
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
. ..+.++...|++++|++.+
T Consensus 250 ~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 V---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHHhhHHHH
Confidence 4 4467788889999998776
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.70 E-value=8e-16 Score=133.60 Aligned_cols=246 Identities=11% Similarity=-0.014 Sum_probs=139.2
Q ss_pred hHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhh
Q 042503 169 RNLMIHGFCKKGDVDKGLYLFREMRE--R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELD--EATVVAVLPICA 243 (477)
Q Consensus 169 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~ 243 (477)
+......+...|++++|++.|++..+ | +...+..+...+...|++++|+..+++....+..|+ ...+..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455666677777777777776653 2 344666677777777777777777777666321111 222555556666
Q ss_pred ccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHH
Q 042503 244 RLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYE 323 (477)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (477)
..|+++.|...++.+.+.. |.+..++..+...|...|++++|...|++..+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------------------------- 136 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--------------------------- 136 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---------------------------
T ss_pred HcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---------------------------
Confidence 6666666666666666655 44445555555555555555555555555443
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHhc----
Q 042503 324 QMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC---VREAYDLIRSM---- 396 (477)
Q Consensus 324 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~---- 396 (477)
.. +.+...+..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ +++|...+++.
T Consensus 137 ----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 137 ----PT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp ----SS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred ----cC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 21 2233333333312222235555555555554321 2234444445555555554 55555555544
Q ss_pred CCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 397 SIRPN------AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 397 ~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
...|+ ...+..+...|...|++++|.+.++++++.+|.++.++..+.......+
T Consensus 210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11222 2467778888888999999999999999999988888877777665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-15 Score=141.14 Aligned_cols=345 Identities=10% Similarity=0.016 Sum_probs=239.8
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCCh---hhHHHHhcccCCCchHHhHHHHHHHHhcC-
Q 042503 105 PLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQM---DDGMKVFDEMSHRDVIVRNLMIHGFCKKG- 180 (477)
Q Consensus 105 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~- 180 (477)
.+...+.+.|++++|.++|+...+.| +...+..|..+|...|+. ++|...|++..+.+...+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35667788999999999999998876 455566677777788888 99999999988776666777777565555
Q ss_pred ----ChHHHHHHHHhcCCC-ChhhHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchH
Q 042503 181 ----DVDKGLYLFREMRER-SVVSWNLMISSLGKSGRDS---EALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQ 252 (477)
Q Consensus 181 ----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (477)
+.++|.+.|++..++ +...+..|...|...+..+ .+...+......|. ......+...+...+.++.+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence 788999999988763 4557888888888776544 45555555555553 345556667777777666665
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHhcC---ChHHHHHHhccCCCC---CceeHHHHHHHHHhc----CCchHHHHHH
Q 042503 253 WIHSYAESSGLYRKVVSVGNALVDFYCKCG---ILDTARNVFKEIPRK---NVVSWNAMISGLAFN----GRGELGVELY 322 (477)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~a~~~~ 322 (477)
.......+.-. ..++..+..+...|...| +.++|+..|++..+. +...+..+...|... +++++|..+|
T Consensus 162 ~~a~~~~~~a~-~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAAL-NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHT-TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 55444433322 334447788999999999 999999999987653 223336677777544 6899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHH-h--hccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC-----CHHHHHHHHH
Q 042503 323 EQMIAKGVSPNKATFVGVLTC-C--AHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG-----CVREAYDLIR 394 (477)
Q Consensus 323 ~~m~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~ 394 (477)
++.. .| +...+..+... + ...+++++|...|++..+ .| +...+..|...|. .| ++++|.++|+
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 9987 44 44556666665 3 568999999999999984 43 6778888888887 55 9999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 042503 395 SMSIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE----GGRWDDAETLRMWMRENN 466 (477)
Q Consensus 395 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 466 (477)
+.- ..++.....+...|.. ..++++|...|+++.+.+ ++.+...|+.+|.. ..+.++|..++++..+.|
T Consensus 312 ~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 312 KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 998 7778888888887776 349999999999998754 57889999999985 458999999999999888
Q ss_pred Cc
Q 042503 467 VK 468 (477)
Q Consensus 467 ~~ 468 (477)
.+
T Consensus 389 ~~ 390 (452)
T 3e4b_A 389 TP 390 (452)
T ss_dssp CH
T ss_pred CH
Confidence 53
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-15 Score=134.80 Aligned_cols=245 Identities=9% Similarity=0.026 Sum_probs=167.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc-ccchHHHHHHHHHhCCccchhHHHHHHHHH
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGA-VDIGQWIHSYAESSGLYRKVVSVGNALVDF 277 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (477)
.|..+...+...|++++|+..+++.+... +-+...|..+..++...|+ +++|...++++.... |.+..+|..+..+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence 34445555555555555555555555442 2233444555555555554 555555555555555 6666666666666
Q ss_pred HHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cccHHHH
Q 042503 278 YCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH-AGLVEKA 353 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a 353 (477)
+...|++++|+..|+++.+ .+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 6677777777776666654 345667777778888888888888888888875 5577788888888777 5554666
Q ss_pred -----HHHHHHhhhccCCCCChHHHHHHHHHHHhcC--CHHHHHHHHHhcCCCC-CHHHHHHHHHHHHHcC--------C
Q 042503 354 -----RELFASMTGLHSIVPNLEHYGCMVDVLGRSG--CVREAYDLIRSMSIRP-NAAIWGSLLSSCRTHG--------H 417 (477)
Q Consensus 354 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~--------~ 417 (477)
+..+++..+.. +.+...|..+..++...| ++++|++.++++...| +...+..++.+|.+.| +
T Consensus 255 ~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 47777776432 445677888888888877 6888888888874344 4567888888888764 2
Q ss_pred -hHHHHHHHHHH-HhcCCCCCchHHHHHHHHHhc
Q 042503 418 -VELAEHAVKEL-INLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 418 -~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 449 (477)
.++|+.+++++ .+.+|.....|..++..+...
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 58999999999 899999888898888877543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.1e-16 Score=131.09 Aligned_cols=208 Identities=11% Similarity=0.016 Sum_probs=110.2
Q ss_pred HHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHH
Q 042503 234 TVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLA 310 (477)
Q Consensus 234 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 310 (477)
.+..+...+...|+++.|...++.+.+.. |.+...+..+...+...|++++|...|+++.+ .+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34444444555555555555555555544 44455555555555555555555555554432 23345555556666
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHH
Q 042503 311 FNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAY 390 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 390 (477)
..|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666666554 4455566666666666666666666666665321 334555666666666666666666
Q ss_pred HHHHhc-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 391 DLIRSM-S-IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 391 ~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
+.++++ . .+.+..++..++.++...|++++|...++++++..|.++..+..+....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 666665 2 2233556666666666666666666666666666666665555554443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.69 E-value=5e-15 Score=124.45 Aligned_cols=199 Identities=12% Similarity=0.049 Sum_probs=162.8
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
+.++..+..++..+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 55666777778888888888888888876653 345677888888888999999999999888875 55778888888
Q ss_pred HHhhcc-ccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCC
Q 042503 342 TCCAHA-GLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGH 417 (477)
Q Consensus 342 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 417 (477)
.++... |++++|...++++.+ .+..| +...+..+...+...|++++|...++++ ...| +...+..++..+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 899999 999999999999884 32223 3567888888999999999999999888 3333 47788888999999999
Q ss_pred hHHHHHHHHHHHhcCC-CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 418 VELAEHAVKELINLEP-WNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+++|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999999999998 88888888888889999999999999888764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-15 Score=127.63 Aligned_cols=197 Identities=11% Similarity=-0.003 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCC 344 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 344 (477)
...+..++..+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45556666666666777777666666543 344566777777778888888888888887764 45677778888888
Q ss_pred hccccHHHHHHHHHHhhhccCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHH
Q 042503 345 AHAGLVEKARELFASMTGLHSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 345 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a 421 (477)
...|++++|...++++.+ .+..| +...+..+...+...|++++|.+.++++ .. +.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888874 22233 4567777888888888888888888887 32 33567788888888888888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 422 EHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...++++++..|.++..+..++.++.+.|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888888888888888888888888888888888888887654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.8e-15 Score=129.30 Aligned_cols=223 Identities=9% Similarity=-0.006 Sum_probs=170.4
Q ss_pred HHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCce----eHHHHHHHHHhc
Q 042503 239 LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVV----SWNAMISGLAFN 312 (477)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~~l~~~~~~~ 312 (477)
...+...|+++.|...++.+.+.. |.+..++..+...|...|++++|+..++++.+ ++.. .|..+...+...
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 334444444444444444444443 45555566677777777777777777776554 2332 378888999999
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
|++++|...+++..+.. +.+...+..+..++...|++++|...|++..+. .+.+...+..+...+...+++++|.+.
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999875 557788999999999999999999999999843 355677788888344445699999999
Q ss_pred HHhc-CCCCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcC---CCC-----CchHHHHHHHHHhcCCchHHHHHH
Q 042503 393 IRSM-SIRPN-AAIWGSLLSSCRTHGH---VELAEHAVKELINLE---PWN-----SGNYVLLSNIYAEGGRWDDAETLR 459 (477)
Q Consensus 393 ~~~~-~~~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~ 459 (477)
|+++ ...|+ ...+..+..++...|+ +++|...++++++.. |.. ..++..++..|.+.|++++|.+.+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998 44444 6788888899998888 888999999998775 432 257888999999999999999999
Q ss_pred HHHHhCC
Q 042503 460 MWMRENN 466 (477)
Q Consensus 460 ~~~~~~~ 466 (477)
++.++..
T Consensus 245 ~~al~~~ 251 (272)
T 3u4t_A 245 KNILALD 251 (272)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-17 Score=157.26 Aligned_cols=149 Identities=15% Similarity=0.080 Sum_probs=112.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHH---HcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHH
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMR---DQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNAL 274 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 274 (477)
.+||++|++|++.|+.++|..+|++|. ..|+.||..||+++|.+|++.|++++|.++|++|...|+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~----------- 196 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL----------- 196 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------
Confidence 478888888888888888888887765 357888888888888888888888888888888888886
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCc-hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHH
Q 042503 275 VDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRG-ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKA 353 (477)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 353 (477)
.||+.+||++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. .+
T Consensus 197 ---------------------~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~v 251 (1134)
T 3spa_A 197 ---------------------TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TV 251 (1134)
T ss_dssp ---------------------CCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HH
T ss_pred ---------------------CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HH
Confidence 56777788888888888875 68899999999999999999999888655443 44
Q ss_pred HHHHHHhhhccCCCCC------hHHHHHHHHHHHhcC
Q 042503 354 RELFASMTGLHSIVPN------LEHYGCMVDVLGRSG 384 (477)
Q Consensus 354 ~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g 384 (477)
++..+++. .++.|+ ..+...|.+.|.+.+
T Consensus 252 L~~Vrkv~--P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 252 LKAVHKVK--PTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHGGGC--CCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHhC--cccCCCCCCcccccchHHHHHHHccCC
Confidence 44444453 233333 445555667777655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-17 Score=158.91 Aligned_cols=129 Identities=13% Similarity=0.167 Sum_probs=114.4
Q ss_pred chhHHHhHHHHHhhcCChhHHHHHhccCC-------CCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHH
Q 042503 33 SNLILAHFVSVCGTLNEIKYATKIFNQMR-------NPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAP 105 (477)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 105 (477)
-..+|+++|++|++.|++++|.++|+.|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999997653 39999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCc-hhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhccc
Q 042503 106 LLKACLGVGDL-RVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEM 161 (477)
Q Consensus 106 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (477)
+|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++...+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 99999999986 789999999999999999999999988776665555554444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-14 Score=123.50 Aligned_cols=198 Identities=13% Similarity=-0.047 Sum_probs=135.9
Q ss_pred HHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCc
Q 042503 239 LPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRG 315 (477)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 315 (477)
...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|...|+++.+ .+...+..+...+...|++
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHH
Confidence 333344444444444444444433 44444555555555556666666555555432 2445566667777777777
Q ss_pred hHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 042503 316 ELGVELYEQMIAKGVSP-NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIR 394 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 394 (477)
++|..+++++...+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...|...|++++|...++
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~ 199 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYD 199 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888777776622233 55677778888888889999998888887432 4457778888888999999999999998
Q ss_pred hc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 395 SM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 395 ~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
++ .. +.+...+..+...+...|++++|.+.++++.+..|.++....
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 200 LFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 88 33 345677888888899999999999999999999998766543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-15 Score=134.20 Aligned_cols=228 Identities=13% Similarity=0.068 Sum_probs=198.0
Q ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCC-hHHHHHHhccCCC---CCceeHHHHHHH
Q 042503 233 ATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI-LDTARNVFKEIPR---KNVVSWNAMISG 308 (477)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~---~~~~~~~~l~~~ 308 (477)
..+..+...+...|+++.|...++++.+.. |.+..+|..+..++...|+ +++|+..|+++.+ .+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 446667777888999999999999999998 8999999999999999997 9999999999875 456789999999
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh-cCCHH
Q 042503 309 LAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR-SGCVR 387 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 387 (477)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++.+.. +.+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999986 6688999999999999999999999999998533 5577889999999999 66657
Q ss_pred HH-----HHHHHhc-CCCC-CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC--------
Q 042503 388 EA-----YDLIRSM-SIRP-NAAIWGSLLSSCRTHG--HVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG-------- 450 (477)
Q Consensus 388 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 450 (477)
+| +..|++. ...| +...|..+...+...| ++++|.+.++++ +.+|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4778777 4455 4678888888888888 689999999998 889999999999999999875
Q ss_pred -CchHHHHHHHHH-HhCC
Q 042503 451 -RWDDAETLRMWM-RENN 466 (477)
Q Consensus 451 -~~~~A~~~~~~~-~~~~ 466 (477)
..++|+++++++ ++.+
T Consensus 332 ~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 332 DILNKALELCEILAKEKD 349 (382)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 258999999998 6543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-15 Score=127.52 Aligned_cols=199 Identities=11% Similarity=0.107 Sum_probs=158.7
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
......+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 34455667788889999999999999998765 356778888999999999999999999999875 56788899999
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChH
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~ 419 (477)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ .. +.+...+..++..+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998532 557788999999999999999999999998 33 446788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+|...++++++..|.++.++..++.+|.+.|++++|...++++++..
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999998754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.2e-15 Score=123.37 Aligned_cols=204 Identities=14% Similarity=0.021 Sum_probs=92.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHH
Q 042503 197 VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVD 276 (477)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 276 (477)
...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|...++++.+.. |.+...+..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence 3445555556666666666666666655442 2234444555555555555555555555555555 555555555555
Q ss_pred HHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHH
Q 042503 277 FYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 277 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (477)
++...+.. ... .....|++++|+..+++..+.. |.+...+..+..++...|++++|+..
T Consensus 82 ~~~~~~~~-----------~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~ 140 (217)
T 2pl2_A 82 AYVALYRQ-----------AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEAS 140 (217)
T ss_dssp HHHHHHHT-----------CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhhhh-----------hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHH
Confidence 55554000 000 0011144555555555554443 33344444455555555555555555
Q ss_pred HHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 042503 357 FASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKE 427 (477)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 427 (477)
|+++.+ .. .+...+..+..+|...|++++|+..|++. ...| +...+..+...+...|++++|...+++
T Consensus 141 ~~~al~-~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 141 LKQALA-LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred HHHHHh-cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555542 22 34444455555555555555555555554 2222 334444455555555555555555444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-13 Score=129.58 Aligned_cols=413 Identities=6% Similarity=-0.037 Sum_probs=242.0
Q ss_pred hhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCC---CchHHHHHH
Q 042503 16 THLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN---PSVLLFNSMIKAYSLNGP---SEEPVKLFA 89 (477)
Q Consensus 16 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~---~~~a~~~~~ 89 (477)
.+-...++..+..+ +-|...|..++..+.+.+.++.++.+|+.+.. .....|...+..-.+.++ ++.+.++|+
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 34444556666665 46899999999999999999999999998876 345678888888888888 999999999
Q ss_pred HHHhCC-CCCCcccHHHHHHHhhccCCc--------hhHHHHHHHHHH-hcc-cCc-chHHHHHHHHHH---------hc
Q 042503 90 LLKNLG-IWPDEYTFAPLLKACLGVGDL--------RVGQCVHGEIIR-SGF-ERF-GSIRIGVVELYT---------SC 148 (477)
Q Consensus 90 ~~~~~~-~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~---------~~ 148 (477)
+..... .+|+...|...+....+.++. +...++|+..+. .|. .++ ...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 998853 137888887777665555543 334467777665 355 554 467777776544 34
Q ss_pred CChhhHHHHhcccCC-Cc---hHHhHH---HHHHH----------HhcCChHHHHHHHHhcC-------C--CC------
Q 042503 149 GQMDDGMKVFDEMSH-RD---VIVRNL---MIHGF----------CKKGDVDKGLYLFREMR-------E--RS------ 196 (477)
Q Consensus 149 g~~~~A~~~~~~~~~-~~---~~~~~~---l~~~~----------~~~~~~~~a~~~~~~~~-------~--~~------ 196 (477)
++++.+..+|++... |. ..+|.. +...+ -...+++.|...+.++. . |.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence 567888899988876 21 122321 11111 00112233333333210 0 00
Q ss_pred --------------hhhHHHHHHHHHhcC-------ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchH-HH
Q 042503 197 --------------VVSWNLMISSLGKSG-------RDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQ-WI 254 (477)
Q Consensus 197 --------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~ 254 (477)
...|...+..--..+ ..+.+..+|++.+.. ++-+...|...+.-+...|+.+.|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 012333333222221 122344556665554 2345556666666666666666675 77
Q ss_pred HHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-------------CC------------ceeHHHHHHHH
Q 042503 255 HSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-------------KN------------VVSWNAMISGL 309 (477)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~------------~~~~~~l~~~~ 309 (477)
++.+.... |.+...|...+....+.|+++.|..+|+++.. |+ ...|...+...
T Consensus 367 l~rAi~~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 367 LKLGQQCI--PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 77776654 55666666666777777777777777766543 21 12455555555
Q ss_pred HhcCCchHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhc-cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHH
Q 042503 310 AFNGRGELGVELYEQMIAK-GVSPNKATFVGVLTCCAH-AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVR 387 (477)
Q Consensus 310 ~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (477)
.+.|+.+.|..+|.+..+. + .+....|...+..-.+ .++.+.|..+|+...+. ++.+...+...++.....|+.+
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHH
Confidence 5666667777777776654 2 1122222222222222 23466777777766643 2344455556666666667777
Q ss_pred HHHHHHHhc-CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 388 EAYDLIRSM-SIRP----NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 388 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
.|..+|++. ...| ....|...+..-.+.|+.+.+..+.+++.+..|++
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 777777766 2222 22456666666666677777777777777766654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-14 Score=123.12 Aligned_cols=224 Identities=8% Similarity=-0.084 Sum_probs=142.5
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCcccchHHHHHHHHHhCCccchhHHH
Q 042503 196 SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICAR----LGAVDIGQWIHSYAESSGLYRKVVSVG 271 (477)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 271 (477)
+..++..+...+...|++++|...|++..+.+ +...+..+...+.. .+++++|...++++.+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 44556666666777777777777777666522 23334444444444 444444444444444332
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAF----NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH- 346 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~- 346 (477)
++..+..+...+.. .+++++|...|++..+.+ +...+..+...+..
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 34445555566666 677777777777766654 55666666666666
Q ss_pred ---cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----c
Q 042503 347 ---AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR----SGCVREAYDLIRSMSIRPNAAIWGSLLSSCRT----H 415 (477)
Q Consensus 347 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~ 415 (477)
.+++++|...|++..+ .+ +...+..+...|.. .+++++|+..|++.-...+...+..+...|.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 7777777777777763 22 45566666666666 77777777777776112345666777777777 7
Q ss_pred CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCC
Q 042503 416 GHVELAEHAVKELINLEPWNSGNYVLLSNIYAE----GGRWDDAETLRMWMRENN 466 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 466 (477)
+++++|...++++.+.+| +..+..++.+|.. .|++++|.+.+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777777777777765 5677777777777 777777777777776655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=139.78 Aligned_cols=264 Identities=12% Similarity=0.017 Sum_probs=152.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC--CC-h----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 042503 170 NLMIHGFCKKGDVDKGLYLFREMRE--RS-V----VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPIC 242 (477)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~~~~--~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 242 (477)
..+...+...|++++|+..|+++.+ |+ . ..|..+...+...|++++|...+++.....
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 116 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA--------------- 116 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------
Confidence 3444555566666666666655543 21 1 245555555666666666666665544320
Q ss_pred hccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-----C----CceeHHHHHHHHHhcC
Q 042503 243 ARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-----K----NVVSWNAMISGLAFNG 313 (477)
Q Consensus 243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~ 313 (477)
...+..+....++..+...|...|++++|...+++..+ . ...++..+...+...|
T Consensus 117 ----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 117 ----------------KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp ----------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 00010133334444455555555555555555544332 0 1224555555566666
Q ss_pred C-----------------chHHHHHHHHHHHc----CC-CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC--
Q 042503 314 R-----------------GELGVELYEQMIAK----GV-SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN-- 369 (477)
Q Consensus 314 ~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 369 (477)
+ +++|...+++..+. +. +....++..+..++...|++++|...+++..+...-.++
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 6 66666666554431 11 112345666777777778888888777776532111111
Q ss_pred --hHHHHHHHHHHHhcCCHHHHHHHHHhc-CC---CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----
Q 042503 370 --LEHYGCMVDVLGRSGCVREAYDLIRSM-SI---RPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN---- 435 (477)
Q Consensus 370 --~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---- 435 (477)
...+..+...|...|++++|.+.+++. .. ..+ ..++..+...+...|++++|...++++++..+..
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 226667777788888888888887776 11 111 3567777788888888888888888887664322
Q ss_pred --CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 436 --SGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 436 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
..++..++.+|.+.|++++|...+++..+
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34777888888888888888888887755
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-14 Score=116.94 Aligned_cols=166 Identities=16% Similarity=0.103 Sum_probs=144.4
Q ss_pred CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHH
Q 042503 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMV 377 (477)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (477)
++..|..+...+...|++++|+..|++..+.. |-+...+..+..++...|++++|...+...... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45678888889999999999999999998875 667888999999999999999999999988743 245667778888
Q ss_pred HHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH
Q 042503 378 DVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDA 455 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 455 (477)
..+...++++.|...+++. .. +.+...+..++..+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999888 33 445678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 042503 456 ETLRMWMRENN 466 (477)
Q Consensus 456 ~~~~~~~~~~~ 466 (477)
.+.+++.++..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999998764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-14 Score=134.44 Aligned_cols=291 Identities=13% Similarity=0.041 Sum_probs=160.6
Q ss_pred chHHhHHHHHHHHhcCChHHHHHHHHhcCC--CC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CH
Q 042503 165 DVIVRNLMIHGFCKKGDVDKGLYLFREMRE--RS-----VVSWNLMISSLGKSGRDSEALRLFHEMRDQ----AFEL-DE 232 (477)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 232 (477)
....+......+...|++++|...|++..+ |+ ...+..+...+...|++++|...+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344555666777777888888888777654 22 235667777777778888888777775432 1111 13
Q ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHhCC----ccchhHHHHHHHHHHHhcCC--------------------hHHHH
Q 042503 233 ATVVAVLPICARLGAVDIGQWIHSYAESSGL----YRKVVSVGNALVDFYCKCGI--------------------LDTAR 288 (477)
Q Consensus 233 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~--------------------~~~a~ 288 (477)
..+..+...+...|+++.|...+..+.+... .+....++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3455566666777777777777766654421 01123355666666666666 66666
Q ss_pred HHhccCCC-----CC----ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccccHHHHH
Q 042503 289 NVFKEIPR-----KN----VVSWNAMISGLAFNGRGELGVELYEQMIAKGV-SPN----KATFVGVLTCCAHAGLVEKAR 354 (477)
Q Consensus 289 ~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~ 354 (477)
..+++..+ ++ ..++..+...+...|++++|...+++..+... .++ ..++..+..++...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 65554432 11 12455555566666666666666666554210 111 124555555666666666666
Q ss_pred HHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCC----HHHHHHHHHHHHHcCChHHHH
Q 042503 355 ELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM----SIRPN----AAIWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 355 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~ 422 (477)
..+++..+...-.++ ..++..+...|...|++++|.+.+++. ...++ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666655421110111 334555566666666666666666555 11111 334555566666666666666
Q ss_pred HHHHHHHhcCCCCC------chHHHHHHHHHhcCCchHH
Q 042503 423 HAVKELINLEPWNS------GNYVLLSNIYAEGGRWDDA 455 (477)
Q Consensus 423 ~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A 455 (477)
..++++++..+... .++..++.++...|+...+
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 66666666665542 2344455555555554443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-15 Score=130.88 Aligned_cols=262 Identities=15% Similarity=0.012 Sum_probs=169.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHhhccCcccchHHHHHHHHHh----CCccchhHHHHHHH
Q 042503 204 ISSLGKSGRDSEALRLFHEMRDQAFELD----EATVVAVLPICARLGAVDIGQWIHSYAESS----GLYRKVVSVGNALV 275 (477)
Q Consensus 204 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~ 275 (477)
...+...|++++|...|+++.+.. +.+ ...+..+...+...|+++.|...++.+... +..+....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 334444455555555555544432 111 123334444444555555555544443322 11133345556666
Q ss_pred HHHHhcCChHHHHHHhccCCC-----CC----ceeHHHHHHHHHhcCC--------------------chHHHHHHHHHH
Q 042503 276 DFYCKCGILDTARNVFKEIPR-----KN----VVSWNAMISGLAFNGR--------------------GELGVELYEQMI 326 (477)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~m~ 326 (477)
..+...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 667777777777766665542 11 2256666677777777 777777777665
Q ss_pred Hc----CCC-CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc-
Q 042503 327 AK----GVS-PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM- 396 (477)
Q Consensus 327 ~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~- 396 (477)
.. +.. .....+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|...+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 111 12346777888888999999999999887642111112 236778888999999999999999887
Q ss_pred C---CCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 397 S---IRPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN------SGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 397 ~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
. ..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|...+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1 1222 4577888899999999999999999998765432 3478899999999999999999999988
Q ss_pred hCC
Q 042503 464 ENN 466 (477)
Q Consensus 464 ~~~ 466 (477)
+..
T Consensus 331 ~~~ 333 (338)
T 3ro2_A 331 EIS 333 (338)
T ss_dssp HC-
T ss_pred HHH
Confidence 753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-14 Score=119.18 Aligned_cols=206 Identities=12% Similarity=0.012 Sum_probs=142.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHH
Q 042503 198 VSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDF 277 (477)
Q Consensus 198 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 277 (477)
..+..+...+...|++++|...++++.+. . |.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------------------~--~~~~~~~~~l~~~ 51 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKS-----------------------------------D--PKNELAWLVRAEI 51 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------C--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----------------------------------C--ccchHHHHHHHHH
Confidence 34555555666666666666666655544 2 3334444555555
Q ss_pred HHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhc-CCchHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccccHHH
Q 042503 278 YCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFN-GRGELGVELYEQMIAKGVSP-NKATFVGVLTCCAHAGLVEK 352 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 352 (477)
+...|++++|...++++.+ .+...+..+...+... |++++|...++++.+.+..| +...+..+..++...|++++
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555554432 2344566677777777 88888888888877632223 35677788888888899999
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-R-PNAAIWGSLLSSCRTHGHVELAEHAVKELI 429 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 429 (477)
|...++++.+.. +.+...+..+...+...|++++|.+.++++ .. + .+...+..+...+...|+.+.|..+++.+.
T Consensus 132 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 132 AEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999998887432 445778888888899999999999999887 33 3 466777777788888999999999999999
Q ss_pred hcCCCCCchHHHH
Q 042503 430 NLEPWNSGNYVLL 442 (477)
Q Consensus 430 ~~~p~~~~~~~~l 442 (477)
+..|.++.....+
T Consensus 210 ~~~p~~~~~~~~l 222 (225)
T 2vq2_A 210 ANFPYSEELQTVL 222 (225)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHh
Confidence 8999877665443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-13 Score=120.04 Aligned_cols=224 Identities=8% Similarity=-0.117 Sum_probs=175.5
Q ss_pred chHHhHHHHHHHHhcCChHHHHHHHHhcCCC-ChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 165 DVIVRNLMIHGFCKKGDVDKGLYLFREMRER-SVVSWNLMISSLGK----SGRDSEALRLFHEMRDQAFELDEATVVAVL 239 (477)
Q Consensus 165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 239 (477)
+..++..+...+...|++++|.+.|++..++ +..++..+...+.. .+++++|...|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5667788889999999999999999998774 56688889999999 999999999999998876 667777777
Q ss_pred HHhhc----cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHh----
Q 042503 240 PICAR----LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAF---- 311 (477)
Q Consensus 240 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~---- 311 (477)
..+.. .+++++|...++++.+.+ ++..+..+...+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~-----------------------------------~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK-----------------------------------YAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------------------CHHHHHHHHHHHHHCSSS
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC-----------------------------------CccHHHHHHHHHHcCCCc
Confidence 77777 777777777777776654 22334445555555
Q ss_pred cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----c
Q 042503 312 NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAH----AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR----S 383 (477)
Q Consensus 312 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 383 (477)
.+++++|...+++..+.+ +...+..+...+.. .+++++|...|++..+ . .+...+..+...|.. .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCC
Confidence 677777888887777765 45566677777776 7888899888888874 2 345677788888888 8
Q ss_pred CCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCC
Q 042503 384 GCVREAYDLIRSM-SIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 384 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~ 434 (477)
+++++|+..|++. ...| ...+..+...|.. .+++++|.+.++++.+.+|.
T Consensus 200 ~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred ccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8999999998887 3333 6778888888888 89999999999999998875
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.5e-15 Score=138.58 Aligned_cols=287 Identities=11% Similarity=-0.010 Sum_probs=208.6
Q ss_pred CcchHHHHHHHHHHhcCChhhHHHHhcccCC--Cc-----hHHhHHHHHHHHhcCChHHHHHHHHhcCC-----C----C
Q 042503 133 RFGSIRIGVVELYTSCGQMDDGMKVFDEMSH--RD-----VIVRNLMIHGFCKKGDVDKGLYLFREMRE-----R----S 196 (477)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~ 196 (477)
.....+......+...|++++|...|++..+ |+ ...+..+...+...|++++|...|++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445566777888899999999999988765 32 34677888889999999999999887643 1 2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhhccCc--------------------ccch
Q 042503 197 VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFE-LD----EATVVAVLPICARLGA--------------------VDIG 251 (477)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a 251 (477)
..++..+...+...|++++|...+++....... ++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 346778888899999999999999988765211 22 3366777788888899 8888
Q ss_pred HHHHHHHHHh----CCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-----CC----ceeHHHHHHHHHhcCCchHH
Q 042503 252 QWIHSYAESS----GLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-----KN----VVSWNAMISGLAFNGRGELG 318 (477)
Q Consensus 252 ~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a 318 (477)
...+..+.+. +..+....++..+...|...|++++|...+++..+ ++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888877654 21144455678888999999999999998887764 22 13677888889999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHH
Q 042503 319 VELYEQMIAKGVS-PN----KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREA 389 (477)
Q Consensus 319 ~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 389 (477)
...+++....... ++ ..++..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999888763211 11 456778888899999999999999887642211122 45677888889999999999
Q ss_pred HHHHHhc-------CCCC-CHHHHHHHHHHHHHcCChH
Q 042503 390 YDLIRSM-------SIRP-NAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 390 ~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~ 419 (477)
.+.+++. +..+ ...++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 9988886 1111 1245555666666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-14 Score=124.08 Aligned_cols=236 Identities=7% Similarity=-0.147 Sum_probs=158.0
Q ss_pred CChHHHHHHHHhcCCC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchH
Q 042503 180 GDVDKGLYLFREMRER-------SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQ 252 (477)
Q Consensus 180 ~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 252 (477)
|++++|++.|+++.+. +..++..+...+...|++++|...|+++.... +.+...+..+...+...|+++.|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 4445555555444431 23456666666667777777777777666653 335566666666777777777777
Q ss_pred HHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 042503 253 WIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGV 330 (477)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 330 (477)
..++.+.+.. |.+..++..+...|...|++++|...|+++.+ |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 98 EAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 7777777665 56667777778888888888888888877654 433334444455566789999999998887764
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC-----ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHH
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP-----NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAI 404 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 404 (477)
+++...+. ++..+...++.++|...+++..+ . .| +...+..+...|.+.|++++|...|+++ ...|+.
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~-~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 248 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADAT-D--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-- 248 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC-S--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhc-c--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--
Confidence 44444443 66667778888899999988773 2 22 1567888899999999999999999998 666643
Q ss_pred HHHHHHHHHHcCChHHHHHHH
Q 042503 405 WGSLLSSCRTHGHVELAEHAV 425 (477)
Q Consensus 405 ~~~l~~~~~~~~~~~~a~~~~ 425 (477)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 223355677788888887766
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.4e-15 Score=137.65 Aligned_cols=192 Identities=8% Similarity=-0.049 Sum_probs=153.1
Q ss_pred cchhHHHHHHHHHHHhcCCh-HHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGIL-DTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGV 340 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 340 (477)
+.+...+..+...+...|++ ++|+..|++..+ .+...|..+..+|...|++++|...|++..+. .|+...+..+
T Consensus 99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~l 176 (474)
T 4abn_A 99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNL 176 (474)
T ss_dssp CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHH
T ss_pred chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHH
Confidence 34444555555555555555 555555555432 23456777777788888888888888888776 4667888888
Q ss_pred HHHhhcc---------ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhc--------CCHHHHHHHHHhc-CCCC--
Q 042503 341 LTCCAHA---------GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRS--------GCVREAYDLIRSM-SIRP-- 400 (477)
Q Consensus 341 ~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p-- 400 (477)
..++... |++++|+..|+++.+.. +.+...|..+..+|... |++++|++.|++. ...|
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 8888888 99999999999988532 55678888899999888 9999999999998 4455
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHH
Q 042503 401 --NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRM 460 (477)
Q Consensus 401 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 460 (477)
+...|..+..+|...|++++|.+.|+++++.+|.++.++..++.++...|++++|.+.+.
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778999999999999999999999999999999999999999999999999999987543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-14 Score=131.29 Aligned_cols=271 Identities=13% Similarity=0.030 Sum_probs=183.7
Q ss_pred chHHHHHHHHHHhcCChhhHHHHhcccCC--Cc-h----HHhHHHHHHHHhcCChHHHHHHHHhcCC---------CChh
Q 042503 135 GSIRIGVVELYTSCGQMDDGMKVFDEMSH--RD-V----IVRNLMIHGFCKKGDVDKGLYLFREMRE---------RSVV 198 (477)
Q Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~ 198 (477)
...+..+...+...|++++|...|++..+ |+ . ..+..+...|...|++++|.+.|++..+ ....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44555677889999999999999998865 32 2 4678889999999999999999988754 1234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcC----C-CCCHHHHHHHHHHhhccCc----------ccchHHHHHHHHHhCC
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQA----F-ELDEATVVAVLPICARLGA----------VDIGQWIHSYAESSGL 263 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~-~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~ 263 (477)
++..+...+...|++++|...+++..... - +.....+..+...+...|+ .+.+...
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~--------- 198 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA--------- 198 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH---------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH---------
Confidence 67888889999999999999998876531 0 1112233444444444555 0000000
Q ss_pred ccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-----C----CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCC
Q 042503 264 YRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-----K----NVVSWNAMISGLAFNGRGELGVELYEQMIAKGV-SPN 333 (477)
Q Consensus 264 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~ 333 (477)
+++|...+++..+ . ....+..+...+...|++++|...+++..+... .++
T Consensus 199 --------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 199 --------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 4444444333221 1 123556666777777777777777777665310 011
Q ss_pred ----HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC---CCC
Q 042503 334 ----KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP----NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI---RPN 401 (477)
Q Consensus 334 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~ 401 (477)
...+..+..++...|++++|...+++..+...-.. ...++..+...|...|++++|...+++. .. .++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 23677788888888999999888887764221111 1456778888899999999999998887 11 112
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 402 ----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 402 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
..++..+...|...|++++|...+++++++.+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 347788889999999999999999999887753
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.5e-12 Score=122.00 Aligned_cols=400 Identities=9% Similarity=-0.009 Sum_probs=278.7
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCC---chhHHHHHHHHHHhcc-cCcchHH
Q 042503 63 PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGD---LRVGQCVHGEIIRSGF-ERFGSIR 138 (477)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~ 138 (477)
.|..+|..++..+.+.+.++.+..+|+.+... .+.....|...+..-.+.++ ++.+..+|+..+...+ .|++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 57889999999999999999999999999986 45566778888888888888 9999999999988642 3678888
Q ss_pred HHHHHHHHhcCCh--------hhHHHHhcccC------CC-chHHhHHHHHHHH---------hcCChHHHHHHHHhcCC
Q 042503 139 IGVVELYTSCGQM--------DDGMKVFDEMS------HR-DVIVRNLMIHGFC---------KKGDVDKGLYLFREMRE 194 (477)
Q Consensus 139 ~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 194 (477)
...+....+.++. +.+.++|+... ++ +...|...+.... ..++++.+.++|++...
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 8888776666654 33446666532 22 3457777765443 34567889999999876
Q ss_pred -CCh---hhH---HHHHHHH----------HhcCChhHHHHHHHHHHHc--CC----C-----------C-----C---H
Q 042503 195 -RSV---VSW---NLMISSL----------GKSGRDSEALRLFHEMRDQ--AF----E-----------L-----D---E 232 (477)
Q Consensus 195 -~~~---~~~---~~l~~~~----------~~~~~~~~a~~~~~~m~~~--~~----~-----------~-----~---~ 232 (477)
|.. .+| ..+.... -...+++.|...+.++... ++ + | + .
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql 302 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHH
Confidence 321 122 2222111 0012234444555443221 11 1 1 0 1
Q ss_pred HHHHHHHHHhhccC-------cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHH-HHhccCCC--C-Ccee
Q 042503 233 ATVVAVLPICARLG-------AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTAR-NVFKEIPR--K-NVVS 301 (477)
Q Consensus 233 ~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~--~-~~~~ 301 (477)
..|...+.---..+ ..+.+..++++++... |..+.+|...+..+...|+.++|. .+|++... | +...
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L 380 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence 22333333222211 1234567788888887 788999999999999999999996 99988765 3 4445
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHhhccccHHHHHHHHHHh
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGV---------SPN------------KATFVGVLTCCAHAGLVEKARELFASM 360 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~ 360 (477)
|-..+...-+.|++++|..+|+++..... .|+ ...|...+....+.|+.+.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67777888889999999999999886410 131 335777777778889999999999999
Q ss_pred hhccCCCCChHHHHHHHHHHHhc-CCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---
Q 042503 361 TGLHSIVPNLEHYGCMVDVLGRS-GCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW--- 434 (477)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--- 434 (477)
.+..+ .+....|...+..-.+. ++.+.|.++|+.. ..+.+...|...+......|+.+.|..+|++++...|+
T Consensus 461 ~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 461 RRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 85311 12234444333333344 4599999999998 33445667778888888899999999999999998873
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 435 NSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
....|..++..-.+.|+.+.+.++.+++.+.-
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 45678899999999999999999999998874
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.5e-14 Score=127.60 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=14.2
Q ss_pred hccCCchhHHHHHHHHHHh
Q 042503 111 LGVGDLRVGQCVHGEIIRS 129 (477)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~ 129 (477)
.+.+++++|..+++++.+.
T Consensus 23 i~~~~~~~A~~l~~~i~~~ 41 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQE 41 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHH
Confidence 5677888888888877654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-12 Score=114.30 Aligned_cols=219 Identities=10% Similarity=0.003 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-------ccCcc-------cchHHHHHHHHH-hCCccchhHHHHHHHHHH
Q 042503 214 SEALRLFHEMRDQAFELDEATVVAVLPICA-------RLGAV-------DIGQWIHSYAES-SGLYRKVVSVGNALVDFY 278 (477)
Q Consensus 214 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~ 278 (477)
++|...|++..... +-+...|..++..+. ..|++ ++|..+++++.+ .. |.+..+|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 45666666666542 334455555554443 24665 677777777777 34 66777778888888
Q ss_pred HhcCChHHHHHHhccCCC--C-Cce-eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh-ccccHHHH
Q 042503 279 CKCGILDTARNVFKEIPR--K-NVV-SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA-HAGLVEKA 353 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 353 (477)
.+.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888887665 3 233 67777888888888888888888888764 444445544333322 36888888
Q ss_pred HHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-C---CCC--CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 042503 354 RELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-S---IRP--NAAIWGSLLSSCRTHGHVELAEHAVKE 427 (477)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 427 (477)
..+|++..+.. +.+...|..++..+.+.|++++|..+|++. . ..| ....|..++....+.|+.+.|..++++
T Consensus 189 ~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887433 446677888888888888888888888887 2 244 356788888888888888888888888
Q ss_pred HHhcCCCCCch
Q 042503 428 LINLEPWNSGN 438 (477)
Q Consensus 428 ~~~~~p~~~~~ 438 (477)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 88888876544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.3e-14 Score=128.13 Aligned_cols=196 Identities=9% Similarity=0.000 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC-----CC-----ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCC---
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR-----KN-----VVSWNAMISGLAFNGRGELGVELYEQMIAKGV-SPN--- 333 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~--- 333 (477)
..++..+...|...|+++.|...+++..+ ++ ..+++.+...|...|++++|...+++..+... .++
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 34445555555555655555555554432 11 13456666677777777777777776654310 011
Q ss_pred -HHHHHHHHHHhhccccHHHHHHHHHHhhhc---cCC-CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-----CCC-
Q 042503 334 -KATFVGVLTCCAHAGLVEKARELFASMTGL---HSI-VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-----RPN- 401 (477)
Q Consensus 334 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~- 401 (477)
..++..+..+|...|++++|...+++..+. .+. +....++..+...|.+.|++++|...+++. .. .|.
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 235666777777777777777777776531 122 223456677777777778877777777766 11 111
Q ss_pred HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 402 AAIWGSLLSSCRTHGH---VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 402 ~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
...+..+...+...|+ +++|..++++. ...|.....+..++..|...|++++|...+++..+
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1234556666667777 66666666655 22233455677778888888888888888877765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.3e-14 Score=125.51 Aligned_cols=265 Identities=14% Similarity=0.062 Sum_probs=158.6
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCC--Cc-----hHHhHHHHHHHHhcCChHHHHHHHHhcCC-----C----ChhhHHH
Q 042503 139 IGVVELYTSCGQMDDGMKVFDEMSH--RD-----VIVRNLMIHGFCKKGDVDKGLYLFREMRE-----R----SVVSWNL 202 (477)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~----~~~~~~~ 202 (477)
......+...|++++|...|++..+ |+ ...+..+...+...|++++|.+.+++... + ...++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 3444555566666666666665543 11 23344455555555555555555544332 0 1223444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcC
Q 042503 203 MISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCG 282 (477)
Q Consensus 203 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 282 (477)
+...+...|++++|...+++..+.... .+..+....++..+...+...|
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~-------------------------------~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRE-------------------------------LNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-------------------------------TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHH-------------------------------hcCchHHHHHHHHHHHHHHHcC
Confidence 444555555555555555544332100 0100112234455566666666
Q ss_pred C--------------------hHHHHHHhccCCC-----CC----ceeHHHHHHHHHhcCCchHHHHHHHHHHHc----C
Q 042503 283 I--------------------LDTARNVFKEIPR-----KN----VVSWNAMISGLAFNGRGELGVELYEQMIAK----G 329 (477)
Q Consensus 283 ~--------------------~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~ 329 (477)
+ +++|...+++..+ ++ ...+..+...+...|++++|...+++..+. +
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 6 6666665554432 11 235667777788888888888888877653 1
Q ss_pred CC-CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc-CC---CC
Q 042503 330 VS-PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM-SI---RP 400 (477)
Q Consensus 330 ~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p 400 (477)
.+ ....++..+..++...|++++|...+++..+...-.++ ..++..+...|...|++++|...+++. .. .+
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 01 11336777888889999999999999887642211122 456778888999999999999999887 11 11
Q ss_pred C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 401 N----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 401 ~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
+ ..++..+...+...|++++|...+++++++.+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 2 347788899999999999999999999987754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-13 Score=110.47 Aligned_cols=168 Identities=14% Similarity=0.074 Sum_probs=138.2
Q ss_pred chhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042503 266 KVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLT 342 (477)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 342 (477)
.+..+|..+...|...|++++|+..|++..+ .++.+|..+..++.+.|++++|...+....... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4556777788888888888888888877654 355677888888889999999999999988875 556777888888
Q ss_pred HhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHH
Q 042503 343 CCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVEL 420 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 420 (477)
.+...++++.+...+.+..+. .+.+...+..+...|.+.|++++|++.|++. ...| +...+..++.++.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 889999999999999988743 2556778888999999999999999999988 4444 56889999999999999999
Q ss_pred HHHHHHHHHhcCCCCC
Q 042503 421 AEHAVKELINLEPWNS 436 (477)
Q Consensus 421 a~~~~~~~~~~~p~~~ 436 (477)
|++.|+++++.+|.++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999998653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-13 Score=109.92 Aligned_cols=131 Identities=15% Similarity=0.041 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHH
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSS 411 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 411 (477)
...+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ..+.+...+..++..
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 119 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Confidence 344444444555555555555555554421 1233445555555555566666666665555 223345566666677
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 412 CRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+...|++++|...++++++..|.++..+..++.++...|++++|...+++..+..
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 7777777777777777777777777777777777777777777777777776543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-12 Score=115.97 Aligned_cols=212 Identities=8% Similarity=-0.018 Sum_probs=173.6
Q ss_pred cchHHHHHHHHHhCCccchhHHHHHHHHHHHh-------cCCh-------HHHHHHhccCCC---C-CceeHHHHHHHHH
Q 042503 249 DIGQWIHSYAESSGLYRKVVSVGNALVDFYCK-------CGIL-------DTARNVFKEIPR---K-NVVSWNAMISGLA 310 (477)
Q Consensus 249 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~ 310 (477)
++|...|+++.... |.++.+|..++..+.. .|++ ++|..+|++..+ | +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56778888888877 8889999988888764 5886 899999998765 3 4457899999999
Q ss_pred hcCCchHHHHHHHHHHHcCCCCC-HH-HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH-hcCCHH
Q 042503 311 FNGRGELGVELYEQMIAKGVSPN-KA-TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG-RSGCVR 387 (477)
Q Consensus 311 ~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~ 387 (477)
+.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999985 443 33 78899999999999999999999998422 344555554443322 379999
Q ss_pred HHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 388 EAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINL---EPW-NSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 388 ~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
+|.++|++. .. +.+...|..++..+.+.|++++|..+|+++++. .|. +...|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998 33 335788999999999999999999999999996 443 566899999999999999999999999
Q ss_pred HHhCC
Q 042503 462 MRENN 466 (477)
Q Consensus 462 ~~~~~ 466 (477)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 98764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-13 Score=130.68 Aligned_cols=163 Identities=17% Similarity=0.153 Sum_probs=141.2
Q ss_pred ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 299 VVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 299 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
..+|+.+..++.+.|++++|+..|++.++.. +-+...+..+..++.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3467778888888888888888888888875 5567888889999999999999999999888532 445778999999
Q ss_pred HHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHH
Q 042503 379 VLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 379 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 456 (477)
+|.+.|++++|++.|++. .+.| +...+..++.++...|++++|+..|+++++++|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 999999999999999988 5555 46789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 042503 457 TLRMWMRE 464 (477)
Q Consensus 457 ~~~~~~~~ 464 (477)
+.++++++
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.2e-14 Score=123.02 Aligned_cols=235 Identities=12% Similarity=0.067 Sum_probs=113.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHh------CCcc
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQ-------AFELDEATVVAVLPICARLGAVDIGQWIHSYAESS------GLYR 265 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~ 265 (477)
++..+...+...|++++|..+++++.+. ..+.....+..+...+...|+++.|...++.+... +..+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4555566666666666666666665542 11112233444444444555555555544444433 1113
Q ss_pred chhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc------CC-CCCHHHHH
Q 042503 266 KVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK------GV-SPNKATFV 338 (477)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~ 338 (477)
....++..+...|...|++++|...|+ ++.+. +. +.....+.
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------------------~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCK-------------------------------RALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHH-------------------------------HHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHH-------------------------------HHHHHHHHhcCCCChHHHHHHH
Confidence 334444455555555555555555444 43332 11 11233455
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhcc-----C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-C---------CCCC-
Q 042503 339 GVLTCCAHAGLVEKARELFASMTGLH-----S-IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-S---------IRPN- 401 (477)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~- 401 (477)
.+..++...|++++|...++++.+.. + .+....++..+...|...|++++|.+.++++ . ..+.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 55556666666666666666554310 1 1112334555666666666666666666555 1 0111
Q ss_pred ------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 402 ------AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 402 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
...+..+...+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112222233344455666666777777777777777788888888888888888888877765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=8.6e-13 Score=120.29 Aligned_cols=302 Identities=9% Similarity=0.008 Sum_probs=149.9
Q ss_pred ccCcchHHHHHHHHH--HhcCChhhHHHHhcccCC--------CchHHhHHHHHH--HHhcCChHHHH---------HHH
Q 042503 131 FERFGSIRIGVVELY--TSCGQMDDGMKVFDEMSH--------RDVIVRNLMIHG--FCKKGDVDKGL---------YLF 189 (477)
Q Consensus 131 ~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~--~~~~~~~~~a~---------~~~ 189 (477)
..|+..+-..|-..| ...+++++|.++++++.+ .+...|..++.. ....+....+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345556666666676 778888888888776532 233333333322 11112222222 333
Q ss_pred HhcCC---CCh-----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHhhccCcccchHHHHH
Q 042503 190 REMRE---RSV-----VSWNLMISSLGKSGRDSEALRLFHEMRDQAF-ELD----EATVVAVLPICARLGAVDIGQWIHS 256 (477)
Q Consensus 190 ~~~~~---~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 256 (477)
+.+.. +.. ..+......+...|++++|+..|++...... .++ ...+..+...+...|+++.|...+.
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 33321 100 1222334455566777777777766654311 111 1233344444444555555544444
Q ss_pred HHHHhCC-----ccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc---
Q 042503 257 YAESSGL-----YRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK--- 328 (477)
Q Consensus 257 ~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--- 328 (477)
++.+... .+... .+++.+..++...|++++|...+++..+.
T Consensus 166 ~al~~~~~~~~~~~~~~-------------------------------~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTI-------------------------------QSLFVIAGNYDDFKHYDKALPHLEAALELAMD 214 (378)
T ss_dssp HHHHHHHTSTTCHHHHH-------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHH-------------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 4433210 00112 23455555566666666666666555442
Q ss_pred -CCC-CCHHHHHHHHHHhhccccHHHHHHHHHHhhhc---cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc----CC-
Q 042503 329 -GVS-PNKATFVGVLTCCAHAGLVEKARELFASMTGL---HSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM----SI- 398 (477)
Q Consensus 329 -~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~- 398 (477)
+.+ ....++..+..++...|++++|...+++..+. .+.+....++..+...|.+.|++++|...+++. ..
T Consensus 215 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 101 11234555666666666666666666666520 022223455666666666777777776666665 11
Q ss_pred -CCC-HHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 399 -RPN-AAIWGSLLSSCRTHGH---VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 399 -~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
.|. ...+..+...+...++ +.+|...+++. ...|.....+..++..|...|++++|...+++..+
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122 2234444444555555 55555555541 11122344556677777777777777777766654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-12 Score=117.27 Aligned_cols=309 Identities=8% Similarity=-0.013 Sum_probs=199.9
Q ss_pred CCCCcccHHHHHHHh--hccCCchhHHHHHHHHHHhccc--C--cchHHHHHHHH--HHhcCChhhHH---------HHh
Q 042503 96 IWPDEYTFAPLLKAC--LGVGDLRVGQCVHGEIIRSGFE--R--FGSIRIGVVEL--YTSCGQMDDGM---------KVF 158 (477)
Q Consensus 96 ~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~--~~~~g~~~~A~---------~~~ 158 (477)
+.|+...-+.+-..+ +..+++++|..+++++.+.... . +...|-.++.. ..-.+.+.... ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 456666666666777 8899999999999998774322 2 23333444432 11123333333 444
Q ss_pred cccCC---Cch--H---HhHHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhhHHHHHHHHHhcCChhHHHHHHH
Q 042503 159 DEMSH---RDV--I---VRNLMIHGFCKKGDVDKGLYLFREMRE-----RS----VVSWNLMISSLGKSGRDSEALRLFH 221 (477)
Q Consensus 159 ~~~~~---~~~--~---~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 221 (477)
+.+.. +.. . .+......+...|++++|+..|++..+ ++ ..++..+...+...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 44432 111 1 223345566789999999999998764 22 3478889999999999999999999
Q ss_pred HHHHcCC-----CC-CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCC
Q 042503 222 EMRDQAF-----EL-DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIP 295 (477)
Q Consensus 222 ~m~~~~~-----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 295 (477)
+..+... .+ ...++..+..++...|+++.|...+.++.+......+..
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-------------------------- 219 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR-------------------------- 219 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------------------
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH--------------------------
Confidence 8775311 11 234566777778888888888888877665421000000
Q ss_pred CCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc----CCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCC---CC
Q 042503 296 RKNVVSWNAMISGLAFNGRGELGVELYEQMIAK----GVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSI---VP 368 (477)
Q Consensus 296 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 368 (477)
....++..+..++...|++++|...+++..+. +.+....++..+..++.+.|++++|...+++..+...- +.
T Consensus 220 -~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 220 -FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp -HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 00123455566666667777777776666551 22334667778888888888999988888887643221 22
Q ss_pred ChHHHHHHHHHHHhcCC---HHHHHHHHHhcCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 369 NLEHYGCMVDVLGRSGC---VREAYDLIRSMSIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
....+..+...|...|+ +.+|+..+++.+..|+. ..+..++..|...|++++|...++++++.
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 23345666667777787 88888888887544433 46677888899999999999999988754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-11 Score=110.47 Aligned_cols=262 Identities=10% Similarity=-0.047 Sum_probs=131.6
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--C--Ch----hhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHH----HHHHH
Q 042503 172 MIHGFCKKGDVDKGLYLFREMRE--R--SV----VSWNLMISSLGKSGRDSEALRLFHEMRDQAF-ELDEA----TVVAV 238 (477)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~----~~~~l 238 (477)
....+...|++++|...+++... | +. .+++.+...+...|++++|...+++...... .++.. ++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34455567777777777666432 1 11 1345555666677777777777777654321 11211 13344
Q ss_pred HHHhhccCcccchHHHHHHHHHhC----Cc--cchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C------CceeHHH
Q 042503 239 LPICARLGAVDIGQWIHSYAESSG----LY--RKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K------NVVSWNA 304 (477)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~------~~~~~~~ 304 (477)
...+...|+++.|...++.+.+.. .. +.....+..+...+...|++++|...+++... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 455566666666666666655432 10 11233444555666666666666666655432 1 0123444
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCC--HHHHH----HHHHHhhccccHHHHHHHHHHhhhccCCCC--ChHHHHHH
Q 042503 305 MISGLAFNGRGELGVELYEQMIAKGVSPN--KATFV----GVLTCCAHAGLVEKARELFASMTGLHSIVP--NLEHYGCM 376 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 376 (477)
+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++........+ ....+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 55555666666666666666554311111 11111 112234456666666666666552110000 01133445
Q ss_pred HHHHHhcCCHHHHHHHHHhc-------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 377 VDVLGRSGCVREAYDLIRSM-------SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
...+...|++++|...+++. +..++. ..+..+..++...|+.++|...+++++...+
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 55566666666666666554 111111 2444445555666666666666666665554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=109.03 Aligned_cols=205 Identities=11% Similarity=-0.014 Sum_probs=135.2
Q ss_pred CCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCC---CceeHHHHH
Q 042503 230 LDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRK---NVVSWNAMI 306 (477)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~ 306 (477)
.|+..+......+...|++++|...++.+.+... +++...+..+..++...|++++|+..|++..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3556677777777888888888888888887762 256666666777777888888887777776542 335667777
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC---ChHHHHHH
Q 042503 307 SGLAFNGRGELGVELYEQMIAKGVSPNK-------ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP---NLEHYGCM 376 (477)
Q Consensus 307 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l 376 (477)
.++...|++++|...+++..+.. +.+. ..|..+...+...|++++|+..|+++.+. .| +...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHH
Confidence 77777788888888887777754 3344 44666667777777777887777777632 23 34566666
Q ss_pred HHHHHhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 377 VDVLGRSGCVREAYDLIRSM-S-IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
..+|...|+. .++++ . ...+...+.... ....+.+++|...++++++++|.++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 6666554432 22332 1 122233333332 23455678899999999999998887777666553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=7.6e-12 Score=101.27 Aligned_cols=171 Identities=15% Similarity=-0.001 Sum_probs=147.6
Q ss_pred chhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042503 266 KVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLT 342 (477)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 342 (477)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3455667888899999999999999999876 355678888899999999999999999999875 667888999999
Q ss_pred HhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHH
Q 042503 343 CCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVEL 420 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~ 420 (477)
.+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ..+.+...+..++..+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999843 3567788899999999999999999999998 334467889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchH
Q 042503 421 AEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 421 a~~~~~~~~~~~p~~~~~~ 439 (477)
|...++++++..|.++...
T Consensus 163 A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 163 ALPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHHcCCCchhhH
Confidence 9999999999988766543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-12 Score=121.38 Aligned_cols=209 Identities=12% Similarity=0.007 Sum_probs=164.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcc-cchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHh
Q 042503 213 DSEALRLFHEMRDQAFELDEATVVAVLPICARLGAV-DIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVF 291 (477)
Q Consensus 213 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 291 (477)
+++++..++...... +.+...+..+...+...|++ ++|...++++.+.. |.+..++..+..+|...|++++|...|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455556666544432 34566677777777778888 88888888887776 777788888888888888888888888
Q ss_pred ccCCC--CCceeHHHHHHHHHhc---------CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc--------ccHHH
Q 042503 292 KEIPR--KNVVSWNAMISGLAFN---------GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA--------GLVEK 352 (477)
Q Consensus 292 ~~~~~--~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--------~~~~~ 352 (477)
++..+ |+...+..+...+... |++++|+..+++..+.. +.+...+..+..++... |++++
T Consensus 161 ~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 161 SGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 87765 5566777788888888 99999999999998875 66788888999999888 99999
Q ss_pred HHHHHHHhhhccCCC---CChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 042503 353 ARELFASMTGLHSIV---PNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKE 427 (477)
Q Consensus 353 a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 427 (477)
|+..|++..+.. + .+...|..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998532 3 47788999999999999999999999988 4444 456788888888888888888876543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-12 Score=107.28 Aligned_cols=189 Identities=8% Similarity=-0.049 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC----CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR----KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTC 343 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 343 (477)
+..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 34444555555555555555555554432 233344444455555555555555555555443 3334445555555
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC---HHHHHHHHHHH
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNL-------EHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN---AAIWGSLLSSC 412 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 412 (477)
+...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|++. ...|+ ...+..+..++
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 555555555555555554321 1222 23444444455555555555555554 33443 23444444444
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
... +...++++..+.+.++..+... .....|.+++|...+++.++..
T Consensus 164 ~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 164 YNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 322 2233344444443332222221 2223344599999999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=115.23 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhcCCCchHHHHHHHHHhC-------CCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhc-------cc
Q 042503 67 LFNSMIKAYSLNGPSEEPVKLFALLKNL-------GIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSG-------FE 132 (477)
Q Consensus 67 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~ 132 (477)
++..+...+...|++++|..+|+++.+. ..+....++..+...+...|++++|...+++.+... .+
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555555555555555555442 112223344555555555566666665555555431 11
Q ss_pred CcchHHHHHHHHHHhcCChhhHHHHhcccCC-----------CchHHhHHHHHHHHhcCChHHHHHHHHhcCC-------
Q 042503 133 RFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-----------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE------- 194 (477)
Q Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------- 194 (477)
....++..+...|...|++++|...+++..+ .....+..+...+...|++++|.+.|++..+
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 1234455555555556666666555554432 1122344555555556666666655555432
Q ss_pred C----ChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042503 195 R----SVVSWNLMISSLGKSGRDSEALRLFHEMRD 225 (477)
Q Consensus 195 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 225 (477)
+ ...++..+...+...|++++|...++++..
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 123566677777777788877777777664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-10 Score=98.84 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCC-CCCHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 304 AMISGLAFNGRGELGVELYEQMIAKGV-SPNKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 304 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
.+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444555555555444433321 1233344444444444555555555554444
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-10 Score=103.62 Aligned_cols=127 Identities=13% Similarity=0.011 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHH--
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQAFEL----DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGN-- 272 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 272 (477)
.+..+...+...|++++|...+++........ ....+..+...+...|+++.|...++........+.....+.
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 34445566666666666666666655432111 122344444555555666666665555544311011101111
Q ss_pred ---HHHHHHHhcCChHHHHHHhccCCCCCce-------eHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 273 ---ALVDFYCKCGILDTARNVFKEIPRKNVV-------SWNAMISGLAFNGRGELGVELYEQM 325 (477)
Q Consensus 273 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~m 325 (477)
..+..+...|++++|...+++...+... .+..+...+...|++++|...+++.
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1223355666666666666655542210 1233344444455555555554444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-12 Score=110.86 Aligned_cols=221 Identities=13% Similarity=0.089 Sum_probs=130.0
Q ss_pred ccCcccchHHHHHHHHHh-------CCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-------C----CceeHHHH
Q 042503 244 RLGAVDIGQWIHSYAESS-------GLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-------K----NVVSWNAM 305 (477)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l 305 (477)
..|+++.|...++++.+. .. +....++..+...|...|++++|...++++.+ + ...++..+
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDH-PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 344455555544444432 11 44455566666667777777776666665442 1 12356666
Q ss_pred HHHHHhcCCchHHHHHHHHHHHc------C-CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhc----c-C-CCCChHH
Q 042503 306 ISGLAFNGRGELGVELYEQMIAK------G-VSPNKATFVGVLTCCAHAGLVEKARELFASMTGL----H-S-IVPNLEH 372 (477)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~-~~~~~~~ 372 (477)
...+...|++++|...+++.... . .+....++..+..++...|++++|...++++.+. . + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77777777777777777776654 1 1223556777777888888888888888877642 0 1 1223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-C---------CCCCH-HHHHHHHHHHHHcCC------hHHHHHHHHHHHhcCCCC
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-S---------IRPNA-AIWGSLLSSCRTHGH------VELAEHAVKELINLEPWN 435 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~ 435 (477)
+..+...|...|++++|...+++. . ..+.. ..+..+...+...+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 777788888888888888888776 1 12222 233333333333222 222333333322233445
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+.++..++.+|...|++++|..++++.++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667888999999999999999999888754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=119.92 Aligned_cols=165 Identities=12% Similarity=0.148 Sum_probs=142.6
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVL 341 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 341 (477)
|.+..+++.+...|.+.|++++|+..|++..+ .+..+|..+..++.+.|++++|+..|++.++.. +-+...|..+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 77788888899999999999999999888765 345778889999999999999999999999875 55788999999
Q ss_pred HHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChH
Q 042503 342 TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 342 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~ 419 (477)
.++...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|++.|++. ...|+ ...+..++.++...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999988532 456788999999999999999999999998 55554 578999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 042503 420 LAEHAVKELINLE 432 (477)
Q Consensus 420 ~a~~~~~~~~~~~ 432 (477)
+|.+.+++++++.
T Consensus 163 ~A~~~~~kal~l~ 175 (723)
T 4gyw_A 163 DYDERMKKLVSIV 175 (723)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.5e-11 Score=103.07 Aligned_cols=169 Identities=11% Similarity=-0.003 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHhccCCC-----CC----ceeHHHHHHHHHhc-CCchHHHHHHHHHHHcCCCC-C---
Q 042503 268 VSVGNALVDFYCKCGILDTARNVFKEIPR-----KN----VVSWNAMISGLAFN-GRGELGVELYEQMIAKGVSP-N--- 333 (477)
Q Consensus 268 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~-~--- 333 (477)
..++..+..+|...|++++|+..|++..+ .+ ..+++.+...|... |++++|+..|++..+..... +
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 34455566666666666666655554432 11 23566667777775 77777777777766531100 1
Q ss_pred -HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCCh-----HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHH---
Q 042503 334 -KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNL-----EHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAA--- 403 (477)
Q Consensus 334 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~--- 403 (477)
..++..+...+...|++++|+..|+++.+...-.+.. ..|..+..++...|++++|...|++. .+.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 3456677777778888888888888777422111221 14566677777788888888888777 4455432
Q ss_pred ---HHHHHHHHHH--HcCChHHHHHHHHHHHhcCCCCC
Q 042503 404 ---IWGSLLSSCR--THGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 404 ---~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
.+..++.++. ..+++++|+..|+++..++|...
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 2334444443 34567777777777766666543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.4e-11 Score=102.45 Aligned_cols=172 Identities=10% Similarity=-0.010 Sum_probs=128.1
Q ss_pred ChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhhccccHHHHHHHH
Q 042503 283 ILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK----GVSPN-KATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 283 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
++++|...|++. +..|...|++++|...|.+..+. |-+++ ..+|+.+..+|...|++++|+..+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777766553 55677788888888888877653 31222 457888888888889999998888
Q ss_pred HHhhhccCCCCC----hHHHHHHHHHHHhc-CCHHHHHHHHHhc-CCCC---C----HHHHHHHHHHHHHcCChHHHHHH
Q 042503 358 ASMTGLHSIVPN----LEHYGCMVDVLGRS-GCVREAYDLIRSM-SIRP---N----AAIWGSLLSSCRTHGHVELAEHA 424 (477)
Q Consensus 358 ~~~~~~~~~~~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~p---~----~~~~~~l~~~~~~~~~~~~a~~~ 424 (477)
++..+...-..+ ..+++.+...|... |++++|+..|++. .+.| + ..++..++..+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 887642211111 34678888888886 9999999998887 2211 1 35678888899999999999999
Q ss_pred HHHHHhcCCCCCc-------hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 425 VKELINLEPWNSG-------NYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 425 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++++++..|.++. .+..++.++...|++++|...+++.++.
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999998877654 4677888889999999999999887764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.28 E-value=8.9e-11 Score=100.87 Aligned_cols=188 Identities=12% Similarity=-0.023 Sum_probs=131.5
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-C---ceeHHHHHHHHHhcCCchHHHHHHHHHHHcCC--CCCHHH
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-N---VVSWNAMISGLAFNGRGELGVELYEQMIAKGV--SPNKAT 336 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~ 336 (477)
+.+...+..+...+.+.|++++|...|+++.+ | + ...+..+..++.+.|++++|...|++..+... +.....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45556666777777788888888888877765 2 2 34566777788888888888888888887631 122455
Q ss_pred HHHHHHHhhc--------cccHHHHHHHHHHhhhccCCCCChHHH-----------------HHHHHHHHhcCCHHHHHH
Q 042503 337 FVGVLTCCAH--------AGLVEKARELFASMTGLHSIVPNLEHY-----------------GCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 337 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~ 391 (477)
+..+..++.. .|++++|+..|+++.+.. +.+.... ..+...|.+.|++++|+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 6667777777 888888888888887533 2222222 456778888999999999
Q ss_pred HHHhc-CCCCC----HHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHhcCCch
Q 042503 392 LIRSM-SIRPN----AAIWGSLLSSCRTH----------GHVELAEHAVKELINLEPWNSG---NYVLLSNIYAEGGRWD 453 (477)
Q Consensus 392 ~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~ 453 (477)
.|+++ ...|+ ...+..++.+|... |++++|...++++++..|+++. +...+..++.+.|+++
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 99887 33343 45677777888765 8889999999999999988754 3444555555555444
Q ss_pred H
Q 042503 454 D 454 (477)
Q Consensus 454 ~ 454 (477)
+
T Consensus 250 ~ 250 (261)
T 3qky_A 250 G 250 (261)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-10 Score=94.72 Aligned_cols=182 Identities=12% Similarity=-0.022 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCC--CCc----eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-CCH-HHHHHHH
Q 042503 270 VGNALVDFYCKCGILDTARNVFKEIPR--KNV----VSWNAMISGLAFNGRGELGVELYEQMIAKGVS-PNK-ATFVGVL 341 (477)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~-~~~~~l~ 341 (477)
.+..++..+.+.|++++|+..|+++.+ |+. ..+..++.++.+.|++++|+..|+++.+.... +.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344556666777777777777776653 321 34555666677777777777777777665311 111 1333334
Q ss_pred HHhhc------------------cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHH
Q 042503 342 TCCAH------------------AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAA 403 (477)
Q Consensus 342 ~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~ 403 (477)
.++.. .|++++|...|+++.+.. |.+...+........ .. ... ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~----~~------~~~-----~~ 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF----LK------DRL-----AK 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH----HH------HHH-----HH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH----HH------HHH-----HH
Confidence 44432 345555555555555321 111111111100000 00 000 01
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWNS---GNYVLLSNIYAEGGRWDDAETLRMWMRENNVK 468 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (477)
....++..+.+.|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 113466778899999999999999999999876 57999999999999999999999999887543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-10 Score=87.37 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=89.4
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHH
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 414 (477)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++ ..+.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4455566666677777777776665321 334556666666777777777777777766 223345667777777788
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 415 HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.|++++|...++++.+..|.++..+..++.++.+.|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888888888888888877778888888888888888888888877654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-10 Score=100.38 Aligned_cols=169 Identities=11% Similarity=0.001 Sum_probs=138.5
Q ss_pred CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC-hHH
Q 042503 297 KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPN---KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN-LEH 372 (477)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 372 (477)
.+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..++...|++++|+..|+++.+...-.|. ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355667778888999999999999999999874 334 678888999999999999999999999864322222 456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHhc-CCCCCH-HHH-----------------HHHHHHHHHcCChHHHHHHH
Q 042503 373 YGCMVDVLGR--------SGCVREAYDLIRSM-SIRPNA-AIW-----------------GSLLSSCRTHGHVELAEHAV 425 (477)
Q Consensus 373 ~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~~~~~~a~~~~ 425 (477)
+..+..++.. .|++++|+..|++. ...|+. ... ..++..|...|++++|+..|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7788888988 99999999999998 333432 222 56688899999999999999
Q ss_pred HHHHhcCCCCC---chHHHHHHHHHhc----------CCchHHHHHHHHHHhCC
Q 042503 426 KELINLEPWNS---GNYVLLSNIYAEG----------GRWDDAETLRMWMRENN 466 (477)
Q Consensus 426 ~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 466 (477)
+++++..|.++ ..+..++.+|... |++++|...++++++..
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 99999999854 5788999999877 89999999999998753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=96.23 Aligned_cols=141 Identities=9% Similarity=-0.023 Sum_probs=88.5
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHH
Q 042503 308 GLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVR 387 (477)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (477)
.+...|++++|+..+....... +.+...+..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchH
Confidence 3344556666666666654331 2223344556666777777777777777766422 345666777777777777777
Q ss_pred HHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHH-HHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 388 EAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEH-AVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 388 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
+|+..|++. ...| +...+..++..|.+.|++++|.+ +++++++++|.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777766 4444 35667777777777777765544 3577777777777777777777766664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-10 Score=101.08 Aligned_cols=166 Identities=17% Similarity=0.090 Sum_probs=98.3
Q ss_pred chhHHHHHHHHHHHhcCChHHHHHHhccCCC-------C----CceeHHHHHHHHHhcCCchHHHHHHHHHHHc------
Q 042503 266 KVVSVGNALVDFYCKCGILDTARNVFKEIPR-------K----NVVSWNAMISGLAFNGRGELGVELYEQMIAK------ 328 (477)
Q Consensus 266 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------ 328 (477)
....++..+...|...|++++|...|++..+ + ...++..+...+...|++++|..+++++.+.
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 3344455555555555555555555554432 1 1235666677777778888888877777664
Q ss_pred C-CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhcc------CCCC-ChHHHHHHHHHHHhcC------CHHHHHHHHH
Q 042503 329 G-VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLH------SIVP-NLEHYGCMVDVLGRSG------CVREAYDLIR 394 (477)
Q Consensus 329 ~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g------~~~~A~~~~~ 394 (477)
+ .+....++..+..++...|++++|...++++.+.. ...+ ....+..+...+...+ .+..+...++
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 1 12235577788888889999999999888876420 1122 2233333333333322 3444455555
Q ss_pred hcC-CCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 395 SMS-IRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 395 ~~~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
..+ ..|+ ..++..++..|...|++++|...++++++.
T Consensus 243 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 243 ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 552 2233 357888999999999999999999998865
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.7e-10 Score=92.26 Aligned_cols=162 Identities=10% Similarity=-0.055 Sum_probs=129.3
Q ss_pred CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc----cHHHHHHHHHHhhhccCCCCChHHH
Q 042503 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG----LVEKARELFASMTGLHSIVPNLEHY 373 (477)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 373 (477)
++..+..+...+...+++++|+.+|++..+.| +...+..+...|.. + ++++|...|++..+ .-+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~----~g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE----AGSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH----TTCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH----CCCHHHH
Confidence 45566667777777888888888888888766 55667777777777 6 89999999998874 3466777
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhc-CCCCC---HHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHH
Q 042503 374 GCMVDVLGR----SGCVREAYDLIRSM-SIRPN---AAIWGSLLSSCRT----HGHVELAEHAVKELINLEPWNSGNYVL 441 (477)
Q Consensus 374 ~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (477)
..|...|.. .+++++|+++|++. ...|+ +..+..|...|.. .+++++|...|+++.+. |.++.++..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 888888877 78999999999988 44443 7888888888888 78999999999999888 556788999
Q ss_pred HHHHHHhc-C-----CchHHHHHHHHHHhCCCc
Q 042503 442 LSNIYAEG-G-----RWDDAETLRMWMRENNVK 468 (477)
Q Consensus 442 l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 468 (477)
|+.+|... | ++++|..++++..+.|.+
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 99998764 3 899999999998887743
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.1e-10 Score=98.74 Aligned_cols=163 Identities=10% Similarity=-0.056 Sum_probs=135.0
Q ss_pred CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHH-HH
Q 042503 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYG-CM 376 (477)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l 376 (477)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++... .|+..... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHHH
Confidence 34456667778888999999999999999875 667888999999999999999999999998743 34443332 33
Q ss_pred HHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCc
Q 042503 377 VDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN--SGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~ 452 (477)
...+.+.++.++|++.+++. .. +.+...+..+...+...|++++|...++++++.+|.+ ...+..++.+|...|+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 33467788888899999888 33 4457889999999999999999999999999999988 78999999999999999
Q ss_pred hHHHHHHHHHHh
Q 042503 453 DDAETLRMWMRE 464 (477)
Q Consensus 453 ~~A~~~~~~~~~ 464 (477)
++|...+++.+.
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=117.53 Aligned_cols=169 Identities=9% Similarity=-0.058 Sum_probs=141.3
Q ss_pred HhcCChHHHHHHhccCC--------C---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 279 CKCGILDTARNVFKEIP--------R---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 279 ~~~~~~~~a~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
...|++++|++.+++.. + .+...+..+..++...|++++|...+++..+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999999988776 2 355678888889999999999999999998875 66788888999999999
Q ss_pred ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHH
Q 042503 348 GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAV 425 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 425 (477)
|++++|+..|+++.+.. +.+...+..+..+|.+.|++++ ++.|++. ...| +...+..+..++.+.|++++|+..|
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988532 4467788899999999999999 9999888 4444 5678899999999999999999999
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 426 KELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 426 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
+++++++|.+..++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999877665
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.22 E-value=6.8e-10 Score=84.27 Aligned_cols=131 Identities=15% Similarity=0.228 Sum_probs=111.1
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHH
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVL 380 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (477)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 46677888888999999999999998875 5577788888889999999999999999988432 45677888899999
Q ss_pred HhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 381 GRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 381 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
...|++++|.+.++++ .. +.+...+..++..+...|++++|...++++++.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999988 32 445778888999999999999999999999998875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-09 Score=91.71 Aligned_cols=180 Identities=8% Similarity=-0.006 Sum_probs=127.8
Q ss_pred hHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCC-----CceeHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 251 GQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRK-----NVVSWNAMISGLAFNGRGELGVELYEQM 325 (477)
Q Consensus 251 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m 325 (477)
+...+++....+ +++......+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556666665554 333444457788888888888888888876443 3456677788899999999999999999
Q ss_pred HHcCCCC-----CHHHHHHHHHH--hhccc--cHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 326 IAKGVSP-----NKATFVGVLTC--CAHAG--LVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 326 ~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
.+. .| +..+...+..+ ....| ++..|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 876 55 35555566555 33334 899999999998742 344333344445888999999999998865
Q ss_pred -CC----------CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 042503 397 -SI----------RP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 397 -~~----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (477)
.. .| ++.++..++......|+ +|.++++++.+..|++|.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 22 24 45666577767777787 88999999999999877543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.18 E-value=4e-10 Score=90.23 Aligned_cols=159 Identities=11% Similarity=0.056 Sum_probs=114.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH-H
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV-L 380 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 380 (477)
+......+...|++++|...+++..+.. +.+...+..+..++...|++++|+..++++.+.. |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHH
Confidence 4455566777777778877777766653 4566777777777888888888888887776432 233333222211 1
Q ss_pred HhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--CchHHHHHHHHHhcCCchHHH
Q 042503 381 GRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN--SGNYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 381 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 456 (477)
...+...+|+..+++. ...| +...+..+..++...|++++|...++++++.+|.. +..+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2223334567777777 4445 57888899999999999999999999999999865 558999999999999999999
Q ss_pred HHHHHHHh
Q 042503 457 TLRMWMRE 464 (477)
Q Consensus 457 ~~~~~~~~ 464 (477)
..+++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-10 Score=108.78 Aligned_cols=160 Identities=12% Similarity=0.037 Sum_probs=120.6
Q ss_pred cCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHH
Q 042503 281 CGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
.|++++|...|++..+ .+...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788889999988775 345678888888999999999999999998875 556888888999999999999999999
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHc---CChHHHHHHHHHHHhcC
Q 042503 358 ASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTH---GHVELAEHAVKELINLE 432 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 432 (477)
++..+.. +.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9988532 456778888999999999999999999988 3334 567888888899998 99999999999999999
Q ss_pred CCCCchHHHHH
Q 042503 433 PWNSGNYVLLS 443 (477)
Q Consensus 433 p~~~~~~~~l~ 443 (477)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98888877766
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=89.82 Aligned_cols=125 Identities=8% Similarity=-0.062 Sum_probs=104.1
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCC
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGH 417 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 417 (477)
|...+...|++++|+..++..... .+.+...+..+...|.+.|++++|++.|++. ...| +...|..++.++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 456677889999999999988732 1233456677899999999999999999998 4455 56899999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHH-HHHHHhCC
Q 042503 418 VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETL-RMWMRENN 466 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~ 466 (477)
+++|+..|+++++++|.++.++..++.+|.+.|++++|.+. +++.++..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999887765 58777653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.1e-09 Score=88.56 Aligned_cols=137 Identities=12% Similarity=0.044 Sum_probs=94.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR 382 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (477)
..+..++.+.|++++|+..|++..+.. |.+...+..+..++...|++++|+..|+++.+.. |.+...+..+..+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 446677778888888888888888775 5567788888888888888888888888887432 4556777777777765
Q ss_pred cCC--HHHHHHHHHhcCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 383 SGC--VREAYDLIRSMSIRPNA--AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 383 ~g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
.|. .+.+...++... .|++ ..+.....++...|++++|+..|++++++.|. ......+..
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~~ 198 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 543 344556665552 3333 34455566777788888999999999888885 333333333
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.7e-10 Score=91.60 Aligned_cols=167 Identities=11% Similarity=-0.020 Sum_probs=95.7
Q ss_pred HHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH----------------HHHHHHhcCChHHHHHHhccCCC--
Q 042503 235 VVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA----------------LVDFYCKCGILDTARNVFKEIPR-- 296 (477)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~-- 296 (477)
+......+...|+++.|...++.+.+.. |.+...+.. +..+|.+.|++++|+..|++..+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3334445566777777777777777766 566666655 66666667777777766666543
Q ss_pred -CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc--HHHHHHHHHHhhhccCCCCChHHH
Q 042503 297 -KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL--VEKARELFASMTGLHSIVPNLEHY 373 (477)
Q Consensus 297 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~ 373 (477)
.++..|..+..++...|++++|...|++..+.. |.+...+..+..++...|+ ...+...++.+.. ..|....+
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~ 160 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS---PTKMQYAR 160 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C---CCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---CCchhHHH
Confidence 244556666666666677777777777666654 4456666666666554443 2334444444331 11222233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHH
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGS 407 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 407 (477)
..+..++...|++++|+..|++. ...|+......
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 33444555566667777777666 55666544433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.12 E-value=4.4e-08 Score=91.66 Aligned_cols=372 Identities=10% Similarity=0.019 Sum_probs=196.2
Q ss_pred cCC-CchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCC-CchHHH
Q 042503 11 GRN-TRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRN--PSVLLFNSMIKAYSLNGP-SEEPVK 86 (477)
Q Consensus 11 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~-~~~a~~ 86 (477)
..| ++..|+.+++..+..- |. |+++.+..+|+.... |++..|...+....+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 346 4888888888888764 33 789999999998876 899999998888777663 466788
Q ss_pred HHHHHHhC-CC-CCCcccHHHHHHHhhc----cCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcc
Q 042503 87 LFALLKNL-GI-WPDEYTFAPLLKACLG----VGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDE 160 (477)
Q Consensus 87 ~~~~~~~~-~~-~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (477)
+|+..... |. +++...|...+..+.. .++.+.+..+|+..+......-...|......- .......+..++.+
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~ 148 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGD 148 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHH
Confidence 88887764 42 3355667777766542 456788899999988732211112222222211 11112222222211
Q ss_pred cCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCC----CChhhHHHHHHHHHhcC--C-----hhHHHHHHHHHHHcCCC
Q 042503 161 MSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE----RSVVSWNLMISSLGKSG--R-----DSEALRLFHEMRDQAFE 229 (477)
Q Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~m~~~~~~ 229 (477)
. .+.+..|..+++.+.. .+...|...+..-...+ - .+.+..+|+++.... +
T Consensus 149 ~-----------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p 210 (493)
T 2uy1_A 149 T-----------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-Y 210 (493)
T ss_dssp H-----------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-T
T ss_pred H-----------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-C
Confidence 0 0111222222222111 12223433333322110 0 233455666665542 3
Q ss_pred CCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHH-HHHhccCC----------C--
Q 042503 230 LDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTA-RNVFKEIP----------R-- 296 (477)
Q Consensus 230 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~----------~-- 296 (477)
.++..|...+.-+.+.|+++.|..+++.+... |.+...+.. |....+.++. ..+.+... .
T Consensus 211 ~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (493)
T 2uy1_A 211 YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSK 283 (493)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhccc
Confidence 44555555555556666666777777666666 222222221 1111111111 01111100 0
Q ss_pred CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc-cHHHHHHHHHHhhhccCCCCChHHHHH
Q 042503 297 KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG-LVEKARELFASMTGLHSIVPNLEHYGC 375 (477)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~ 375 (477)
.....|...+....+.++.+.|..+|++. ... +.+...|......-...+ +.+.|..+|+...+.. +.++..+..
T Consensus 284 ~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~ 359 (493)
T 2uy1_A 284 ELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEE 359 (493)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 01134555555555666777788888777 221 223344432222222223 5777888888777433 223445555
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 376 MVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
.++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 360 yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 360 FFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666677788888888888772 2456777777766777888888777777763
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-09 Score=106.79 Aligned_cols=166 Identities=7% Similarity=-0.061 Sum_probs=79.4
Q ss_pred hccCcccchHHHHHHHH--------HhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHh
Q 042503 243 ARLGAVDIGQWIHSYAE--------SSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAF 311 (477)
Q Consensus 243 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 311 (477)
...|++++|...++.+. +.. |.+...+..+...+...|++++|+..|+++.+ .+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 34444555555555444 222 44444445555555555555555555554443 233444445555555
Q ss_pred cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 042503 312 NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 312 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 391 (477)
.|++++|...|++..+.. +.+...+..+..++...|++++ +..|+++.+.. +.+...|..+..+|.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555443 3344444555555555555555 55555554211 2334445555555555555555555
Q ss_pred HHHhc-CCCCCH-HHHHHHHHHHHH
Q 042503 392 LIRSM-SIRPNA-AIWGSLLSSCRT 414 (477)
Q Consensus 392 ~~~~~-~~~p~~-~~~~~l~~~~~~ 414 (477)
.|++. ...|+. ..+..+..++..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHhhcccCcccHHHHHHHHHHHHc
Confidence 55555 344442 344444444433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.11 E-value=1.4e-08 Score=95.05 Aligned_cols=373 Identities=10% Similarity=-0.055 Sum_probs=219.0
Q ss_pred hcC-ChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCC-chhHHHHH
Q 042503 46 TLN-EIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGD-LRVGQCVH 123 (477)
Q Consensus 46 ~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~ 123 (477)
+.| +++.|+.+|+.+.. .+-. |+++.+..+|++.... .|+...|...+....+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 345 36666666665443 2211 8889999999988873 5788888887777766653 45677778
Q ss_pred HHHHHh-cccC-cchHHHHHHHHHH----hcCChhhHHHHhcccCC-CchHHhHHHHHHHH---hcCChHHHHHHHHhcC
Q 042503 124 GEIIRS-GFER-FGSIRIGVVELYT----SCGQMDDGMKVFDEMSH-RDVIVRNLMIHGFC---KKGDVDKGLYLFREMR 193 (477)
Q Consensus 124 ~~~~~~-~~~~-~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~ 193 (477)
+..+.. |..+ +...|...+..+. ..|+.+.+.++|++... |.. .+..+-..|. ...+...+.+++.+
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~-- 148 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIVGD-- 148 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHHHH--
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHHHH--
Confidence 877764 4333 5567777776544 24567778888777655 211 1111111111 11111222222211
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc--C-----cccchHHHHHHHHHhCCccc
Q 042503 194 ERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARL--G-----AVDIGQWIHSYAESSGLYRK 266 (477)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--~-----~~~~a~~~~~~~~~~~~~~~ 266 (477)
. .+.+..|..+++.+...--..+...|...+.--... + ..+.+..+++++.... |.
T Consensus 149 -------------~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~--p~ 211 (493)
T 2uy1_A 149 -------------T--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF--YY 211 (493)
T ss_dssp -------------H--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT--TT
T ss_pred -------------H--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC--CC
Confidence 1 122334444444433210011333444444332211 1 1234677899988876 77
Q ss_pred hhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcC---------CCC---CH
Q 042503 267 VVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKG---------VSP---NK 334 (477)
Q Consensus 267 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---------~~~---~~ 334 (477)
.+.+|...+..+.+.|+.+.|..+|++.... +.....- -.|....+.++. ++.+.+.- ..+ ..
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~-~~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~ 286 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS-LYYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELD 286 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH-HHHHHHTTCTHH---HHHHHHHTC----------CHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH-HHHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccH
Confidence 7889999999999999999999999976543 3221111 123332222222 33333210 011 12
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHhc--CCCCCHHHHHHHHHH
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG-CVREAYDLIRSM--SIRPNAAIWGSLLSS 411 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 411 (477)
..|...+....+.++.+.|..+|+++. ..+ .+...|...+..-...+ +.+.|.++|+.. ..+.++..+...+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIELG-NEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHT-TSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhh-CCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 446666666667888999999999993 222 24444543333323333 699999999988 332235566777777
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 412 CRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
....|+.+.|..+|+++ +.+...|..++..-...|+.+.+..++++..+
T Consensus 364 e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78899999999999997 33567888888888889999999998888875
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.8e-10 Score=85.62 Aligned_cols=98 Identities=9% Similarity=-0.080 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
+...+..+...+.+.|++++|+..|++. ...| +...|..++.++...|++++|+..|+++++++|+++.++..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3456777888888899999999999888 4444 5678888899999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 042503 447 AEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+.|++++|...+++.++..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999888754
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.5e-09 Score=91.37 Aligned_cols=164 Identities=12% Similarity=0.026 Sum_probs=121.6
Q ss_pred CCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHH-H
Q 042503 229 ELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNA-M 305 (477)
Q Consensus 229 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~-l 305 (477)
+.+...+..+...+...|+++.|...++.+.+.. |.+..++..+...+...|++++|...++++.. |+...... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 3344555666667777788888888888887777 77888888999999999999999999999876 43332222 2
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC
Q 042503 306 ISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC 385 (477)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (477)
...+...++.++|...+++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 223566778888888888888875 6677888888888888899999998888887533212225677778888888888
Q ss_pred HHHHHHHHHh
Q 042503 386 VREAYDLIRS 395 (477)
Q Consensus 386 ~~~A~~~~~~ 395 (477)
.++|...+++
T Consensus 271 ~~~a~~~~r~ 280 (287)
T 3qou_A 271 GDALASXYRR 280 (287)
T ss_dssp TCHHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 8887777765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-08 Score=87.02 Aligned_cols=221 Identities=8% Similarity=-0.044 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHH-HHHHHHHhhccC--cccchHHHHHHHHHhCCccchhHHHHHHHHHH----Hhc---C
Q 042503 213 DSEALRLFHEMRDQAFELDEAT-VVAVLPICARLG--AVDIGQWIHSYAESSGLYRKVVSVGNALVDFY----CKC---G 282 (477)
Q Consensus 213 ~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 282 (477)
.++|+.+++.++.. .|+..| ++.--.++...| +++++..+++.+.... |.+..+|+.-...+ ... +
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccC
Confidence 35677777766654 333332 344444444445 6666666666666655 55555554443333 333 4
Q ss_pred ChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCch--HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc------HH
Q 042503 283 ILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGE--LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL------VE 351 (477)
Q Consensus 283 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~------~~ 351 (477)
++++++.+++++.+ .+..+|+.-.-.+.+.|.++ +++..++++++.. +-|...|+.-...+...+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 55555555555443 23334444444444455555 5555555555544 3344444444444444443 45
Q ss_pred HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHH-HHHHHHhc-CC----CCCHHHHHHHHHHHHHcCChHHHHHHH
Q 042503 352 KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVRE-AYDLIRSM-SI----RPNAAIWGSLLSSCRTHGHVELAEHAV 425 (477)
Q Consensus 352 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~a~~~~ 425 (477)
++++.++++.... +-|...|+.+...+.+.|+..+ +..+.+++ .. ..++..+..++.++.+.|+.++|.+++
T Consensus 204 eEl~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 204 EELNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 5555555444221 3344444444444444444222 23333333 11 223344444445555555555555555
Q ss_pred HHHHh-cCCCCCchHH
Q 042503 426 KELIN-LEPWNSGNYV 440 (477)
Q Consensus 426 ~~~~~-~~p~~~~~~~ 440 (477)
+.+.+ .+|.....|.
T Consensus 282 ~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 282 DLLKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHHHTTCGGGHHHHH
T ss_pred HHHHhccChHHHHHHH
Confidence 55543 4454444443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.4e-09 Score=101.23 Aligned_cols=151 Identities=13% Similarity=-0.034 Sum_probs=89.5
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDL 392 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 392 (477)
|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+..+|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56667777777666553 445666666777777777777777777776632 234456666677777777777777777
Q ss_pred HHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc---CCchHHHHHHHHHHhCC
Q 042503 393 IRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG---GRWDDAETLRMWMRENN 466 (477)
Q Consensus 393 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 466 (477)
+++. ...| +...+..+..++...|++++|.+.++++++.+|.++..+..++.++... |++++|.+.+++.++.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 7766 3233 3566667777777777777777777777777777777777777777777 77777777777766544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.2e-09 Score=87.18 Aligned_cols=128 Identities=7% Similarity=-0.101 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLG 381 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 381 (477)
+..+...+...|++++|...+++.. .|+...+..+..++...|++++|+..|++..+.. +.+...+..+..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHH
Confidence 4455666777788888888777663 5577777777888888888888888888777432 445667777777888
Q ss_pred hcCCHHHHHHHHHhc-CCCC-C----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 382 RSGCVREAYDLIRSM-SIRP-N----------------AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
..|++++|++.|++. ...| + ...+..++.++...|++++|...++++++..|.+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888777 2222 1 2567777777888888888888888888887764
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-09 Score=87.60 Aligned_cols=188 Identities=10% Similarity=-0.049 Sum_probs=134.8
Q ss_pred CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCc-cchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCce----eHH
Q 042503 231 DEATVVAVLPICARLGAVDIGQWIHSYAESSGLY-RKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVV----SWN 303 (477)
Q Consensus 231 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~----~~~ 303 (477)
+...+......+...|+++.|...|+.+.+.... +.....+..++.+|.+.|++++|+..|+++.+ |+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666777889999999999999999987631 22346778899999999999999999999865 3322 455
Q ss_pred HHHHHHHh------------------cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccC
Q 042503 304 AMISGLAF------------------NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHS 365 (477)
Q Consensus 304 ~l~~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 365 (477)
.+..++.. .|++++|...|+++++.. |-+.......... + .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----~------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----V------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----H------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----H------HHHHHHH----
Confidence 55555554 578999999999998863 3233222211110 0 0111111
Q ss_pred CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 366 IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA----AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
.....+...|.+.|++++|+..|+++ ...|+. ..+..++.++.+.|+.++|.+.++++....|.+...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 11234677889999999999999998 444442 568889999999999999999999999999887654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.9e-09 Score=93.67 Aligned_cols=219 Identities=14% Similarity=0.019 Sum_probs=151.5
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc-cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHH
Q 042503 209 KSGRDSEALRLFHEMRDQAFELDEATVVAVLPICAR-LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTA 287 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 287 (477)
..|++++|..++++..+.. +.. +.. .++++.|...+.. .+..|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~----------------a~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAK----------------AAVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHH----------------HHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHH----------------HHHHHHHcCCHHHH
Confidence 3577888999988876542 111 111 3555555555443 34567777888888
Q ss_pred HHHhccCCC-----CC----ceeHHHHHHHHHhcCCchHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHhhccccHHHH
Q 042503 288 RNVFKEIPR-----KN----VVSWNAMISGLAFNGRGELGVELYEQMIAKG--V-SPN--KATFVGVLTCCAHAGLVEKA 353 (477)
Q Consensus 288 ~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~-~~~--~~~~~~l~~~~~~~~~~~~a 353 (477)
...|.+..+ .+ ..+|+.+...|...|++++|+..+++..+.- . .+. ..++..+..+|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 877776543 11 2467788888999999999999999876631 1 121 4567888888988 999999
Q ss_pred HHHHHHhhhccCCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC---CCC----HHHHHHHHHHHHHcCChHHH
Q 042503 354 RELFASMTGLHSIVP----NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI---RPN----AAIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 354 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a 421 (477)
+..|++..+...-.. ...++..+...|.+.|++++|+..|++. .+ .++ ...+..++.++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998874221111 1457888999999999999999999988 21 122 23667777788888999999
Q ss_pred HHHHHHHHhcCCCCCch-----HHHHHHHHHhcCCchHHHH
Q 042503 422 EHAVKELINLEPWNSGN-----YVLLSNIYAEGGRWDDAET 457 (477)
Q Consensus 422 ~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 457 (477)
...+++++ ..|..... ...++.++ ..|+.+.+..
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999 88865443 33445544 5677666655
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-09 Score=78.85 Aligned_cols=108 Identities=11% Similarity=-0.032 Sum_probs=62.9
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHH
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCR 413 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 413 (477)
.+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++. .+.| +...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 44455555666666666666666655321 344555666666666666666666666655 2222 3455666666666
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 414 THGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
..|++++|++.|+++++++|.++.++..+..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 66666666666666666666666655555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.9e-09 Score=84.41 Aligned_cols=75 Identities=9% Similarity=0.097 Sum_probs=40.4
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN---AAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
|...+++..+.. +.+...+..+..++...|++++|...|+++ ...|+ ...+..++.++...|+.++|...|+++
T Consensus 93 a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 445555544211 233455555556666666666666666555 33333 335555666666666666666666655
Q ss_pred H
Q 042503 429 I 429 (477)
Q Consensus 429 ~ 429 (477)
+
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-07 Score=80.38 Aligned_cols=212 Identities=14% Similarity=0.113 Sum_probs=169.7
Q ss_pred ccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcC--ChHHHHHHhccCCC---CCceeHHHHHHHH----Hhc---CCc
Q 042503 248 VDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCG--ILDTARNVFKEIPR---KNVVSWNAMISGL----AFN---GRG 315 (477)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~~ 315 (477)
.++|......+...+ |....+|+.-...+...| ++++++..++.+.. .+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 357888888888888 889999999889998888 99999999998875 3445666655555 455 789
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH--HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC------HH
Q 042503 316 ELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE--KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC------VR 387 (477)
Q Consensus 316 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 387 (477)
++++.+++++.+.. +-|...|+.-..++.+.|.++ ++++.++++.+.. +-|...|+.-...+.+.|+ ++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999886 668888888777777788877 9999999998533 5566777766666666666 88
Q ss_pred HHHHHHHhc--CCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcC---CCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 388 EAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHV-ELAEHAVKELINLE---PWNSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 388 ~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
++++.++++ ..+-|...|+.+...+.+.|.. +.+..+.+++++.+ |.++.++..++.+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999888 3345678888888888888774 44667888887766 78888999999999999999999999999
Q ss_pred HHh
Q 042503 462 MRE 464 (477)
Q Consensus 462 ~~~ 464 (477)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 986
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.7e-09 Score=79.00 Aligned_cols=97 Identities=10% Similarity=0.006 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM-SIR-PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
...+......|.+.|++++|++.|++. ... .+...|..++.++.+.|++++|+..++++++++|.++.+|..++.+|.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 456778899999999999999999998 444 467899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 042503 448 EGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~ 466 (477)
..|++++|.+.+++.++..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 9999999999999998754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-09 Score=83.63 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE 448 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (477)
..+..+...+.+.|++++|+..|++. .. +.+...|..+..++...|++++|+..++++++++|.++..+..++.+|..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34444455555555555555555554 22 22344555555555555555555555555555555555555555555555
Q ss_pred cCCchHHHHHHHHHHh
Q 042503 449 GGRWDDAETLRMWMRE 464 (477)
Q Consensus 449 ~g~~~~A~~~~~~~~~ 464 (477)
.|++++|...+++.++
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-08 Score=80.57 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=103.2
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHH
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSC 412 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 412 (477)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++. .. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 456667777788888888888888887432 446777888888888999999999988887 33 34567888899999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCchHHHHHHHHHHh
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNI--YAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 464 (477)
...|++++|...++++++..|.++..+..+..+ +.+.|++++|...+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999888887555555 7788999999999887654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.96 E-value=3.2e-08 Score=81.78 Aligned_cols=132 Identities=5% Similarity=-0.132 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc
Q 042503 270 VGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL 349 (477)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 349 (477)
.+..+...+...|++++|...|++...++...|..+..++...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345678888999999999999999998888899999999999999999999999999875 6678899999999999999
Q ss_pred HHHHHHHHHHhhhccCCCC--------------ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH
Q 042503 350 VEKARELFASMTGLHSIVP--------------NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA 402 (477)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 402 (477)
+++|...|++..+...-.+ ....+..+..+|.+.|++++|.+.|++. ...|+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999985321111 2267888999999999999999999998 666764
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=4.5e-08 Score=80.79 Aligned_cols=175 Identities=10% Similarity=-0.073 Sum_probs=132.6
Q ss_pred chHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-CCceeHHHHHHHHHhcC----CchHHHHHHHH
Q 042503 250 IGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-KNVVSWNAMISGLAFNG----RGELGVELYEQ 324 (477)
Q Consensus 250 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~ 324 (477)
+|...|++..+.+ ++..+..+...|...+++++|...|++..+ .++..+..+...|.. + ++++|..+|++
T Consensus 4 eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 3555566665554 344556677777778888888888877655 355667777777776 6 89999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHhhc----cccHHHHHHHHHHhhhccCCC-CChHHHHHHHHHHHh----cCCHHHHHHHHHh
Q 042503 325 MIAKGVSPNKATFVGVLTCCAH----AGLVEKARELFASMTGLHSIV-PNLEHYGCMVDVLGR----SGCVREAYDLIRS 395 (477)
Q Consensus 325 m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 395 (477)
..+.| +...+..+...|.. .+++++|...|++..+ .+.. .++..+..|...|.. .+++++|+.+|++
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 98766 56677788888877 7899999999999984 3211 126788889999988 8899999999999
Q ss_pred c-CCCCCHHHHHHHHHHHHHc-C-----ChHHHHHHHHHHHhcCC
Q 042503 396 M-SIRPNAAIWGSLLSSCRTH-G-----HVELAEHAVKELINLEP 433 (477)
Q Consensus 396 ~-~~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p 433 (477)
. ...++...+..+...|... | +.++|...|+++.+.+.
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8 4345667788888888653 3 89999999999988875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.7e-08 Score=76.23 Aligned_cols=118 Identities=6% Similarity=-0.090 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHH
Q 042503 332 PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLL 409 (477)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~ 409 (477)
.+...+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|.+.+++. .. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34556667777777777777777777777632 2345667777777777788888888877776 22 33567788888
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
.++...|++++|...++++++..|.+...+..++.++.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888888877654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.3e-08 Score=74.40 Aligned_cols=115 Identities=18% Similarity=0.187 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHH
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSS 411 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 411 (477)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++ ..+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 4567777777888888888888888887432 445677778888888888888888888887 224456788888888
Q ss_pred HHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC
Q 042503 412 CRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGG 450 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 450 (477)
+...|++++|...++++++..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999988888888888776554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-08 Score=76.40 Aligned_cols=118 Identities=12% Similarity=-0.012 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLS 410 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~ 410 (477)
+...+..+...+...|+++.|...+++..+.. +.+...+..+...+...|++++|.+.+++. .. +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 45567777788888888999998888887432 446777888888888999999999998887 33 335678888999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 042503 411 SCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (477)
.+...|++++|...++++++..|.++..+..++.++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999888875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.93 E-value=4.6e-08 Score=85.39 Aligned_cols=160 Identities=10% Similarity=-0.045 Sum_probs=119.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCC-CCCH----HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHH
Q 042503 305 MISGLAFNGRGELGVELYEQMIAKGV-SPNK----ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGC 375 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 375 (477)
.+..+...|++++|..++++...... .|+. ..+..+...+...+++++|+..++++.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888876421 2221 13335667777888999999999998742222233 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CchHH
Q 042503 376 MVDVLGRSGCVREAYDLIRSM-----SIRPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN------SGNYV 440 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 440 (477)
+...|...|++++|+..|+++ ..+.+ ..++..++..|.+.|++++|...++++++..+.. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999998887 11122 2477889999999999999999999998765322 56889
Q ss_pred HHHHHHHhcCC-chHHHHHHHHHHh
Q 042503 441 LLSNIYAEGGR-WDDAETLRMWMRE 464 (477)
Q Consensus 441 ~l~~~~~~~g~-~~~A~~~~~~~~~ 464 (477)
.++.+|.+.|+ +++|.+.+++.++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999988764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.93 E-value=6e-09 Score=83.40 Aligned_cols=128 Identities=11% Similarity=0.060 Sum_probs=93.7
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH-HHhcCCH-
Q 042503 309 LAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV-LGRSGCV- 386 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 386 (477)
+...|++++|...+++..+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 445678888888888887765 5677788888888888888888888888887432 3456677777777 7778887
Q ss_pred -HHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 042503 387 -REAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 387 -~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (477)
++|...+++. ...| +...+..++..+...|++++|...++++++..|.++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888887 3333 456777888888888888888888888888888765533
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.93 E-value=5.9e-08 Score=84.67 Aligned_cols=162 Identities=9% Similarity=-0.082 Sum_probs=110.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCH-----HHHHHHHHHhhccccHHHHHHHHHHhhhccCC--CCC--hHHH
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGVSPNK-----ATFVGVLTCCAHAGLVEKARELFASMTGLHSI--VPN--LEHY 373 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~~~ 373 (477)
...+..+...|++++|...+.+..+....... ..+..+...+...|++++|+..+++..+.... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 33455566777777777777776664322111 12334555667778888888888877632111 111 3477
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc----CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CCch
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM----SIRPN-----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPW------NSGN 438 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~ 438 (477)
+.+...|...|++++|...|++. ...|+ ..++..++..|...|++++|...++++++..+. -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 88888888889999888888876 11222 257888888899999999999999988865421 1457
Q ss_pred HHHHHHHHHhcCCchHH-HHHHHHHHh
Q 042503 439 YVLLSNIYAEGGRWDDA-ETLRMWMRE 464 (477)
Q Consensus 439 ~~~l~~~~~~~g~~~~A-~~~~~~~~~ 464 (477)
+..++.+|.+.|++++| ...+++..+
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88888999999999999 776776543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.1e-08 Score=78.54 Aligned_cols=94 Identities=13% Similarity=-0.030 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SIR-PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (477)
.+..+...+.+.|++++|+..|++. ... .+...|..+..++...|++++|+..++++++.+|.++..+..++.+|...
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3444555555666666666666555 222 24455555666666666666666666666666666666666666666666
Q ss_pred CCchHHHHHHHHHHhC
Q 042503 450 GRWDDAETLRMWMREN 465 (477)
Q Consensus 450 g~~~~A~~~~~~~~~~ 465 (477)
|++++|...+++.++.
T Consensus 100 g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 100 GDLDGAESGFYSARAL 115 (142)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666655543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.3e-08 Score=84.52 Aligned_cols=167 Identities=11% Similarity=-0.037 Sum_probs=123.8
Q ss_pred cchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-Cc------eeHHHHHHHHHhcCCchHHHHHHHHHHHcCC---CC
Q 042503 265 RKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-NV------VSWNAMISGLAFNGRGELGVELYEQMIAKGV---SP 332 (477)
Q Consensus 265 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~ 332 (477)
+.....+...+..+...|++++|.+.+++..+ + .. ..+..+...+...|++++|...+++..+... .+
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 33444556677888899999999988875443 1 11 1234455667788999999999999876421 12
Q ss_pred C--HHHHHHHHHHhhccccHHHHHHHHHHhhh---ccCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC------
Q 042503 333 N--KATFVGVLTCCAHAGLVEKARELFASMTG---LHSIVP--NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI------ 398 (477)
Q Consensus 333 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------ 398 (477)
. ..+++.+...|...|++++|...|+++.+ ..+..+ ...++..+...|...|++++|+..+++. ..
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 2 45788899999999999999999998873 221111 1258889999999999999999999887 11
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHH-HHHHHHHHhc
Q 042503 399 RPN-AAIWGSLLSSCRTHGHVELA-EHAVKELINL 431 (477)
Q Consensus 399 ~p~-~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 431 (477)
... ..++..++.+|...|++++| ...+++++..
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 111 57889999999999999999 8889988754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-09 Score=93.44 Aligned_cols=191 Identities=9% Similarity=-0.064 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Q 042503 269 SVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA 345 (477)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 345 (477)
..+..+...+...|++++|+..|++..+ .+...|..+..++.+.|++++|...+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3344455555555555555555555432 234455556666666666666666666666543 445566666666666
Q ss_pred ccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 042503 346 HAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAV 425 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 425 (477)
..|++++|...|++..+... .+...+...+....+..+...... .......++......+.. + ..|+.++|.+.+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~ 158 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAK--EQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELEEC 158 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHH--HTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTT
T ss_pred HcCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHH
Confidence 77777777776666553211 000011111111111111111111 111122333333333322 2 357788888888
Q ss_pred HHHHhcCCCCCchHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 042503 426 KELINLEPWNSGNYVLLSNIYAEG-GRWDDAETLRMWMREN 465 (477)
Q Consensus 426 ~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 465 (477)
+++++.+|.+......+...+.+. +.+++|.++|++..+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888887776677776666665 6677888888777654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-08 Score=73.77 Aligned_cols=100 Identities=16% Similarity=0.066 Sum_probs=86.0
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CCchHHHHH
Q 042503 368 PNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPW--NSGNYVLLS 443 (477)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~ 443 (477)
.+...+..+...+...|++++|...|++. .. +.+...+..++.++...|++++|...++++++..|. ++..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34566777888888999999999999887 32 345678888999999999999999999999999999 899999999
Q ss_pred HHHHhc-CCchHHHHHHHHHHhCCC
Q 042503 444 NIYAEG-GRWDDAETLRMWMRENNV 467 (477)
Q Consensus 444 ~~~~~~-g~~~~A~~~~~~~~~~~~ 467 (477)
.++.+. |++++|.+.+++..+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999 999999999999987653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-08 Score=75.67 Aligned_cols=93 Identities=10% Similarity=-0.091 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (477)
.+..+...+.+.|++++|+..|++. .. +.+...|..++.++...|++++|+..++++++.+|.++..+..++.++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444444455555555555555554 22 223445555555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHHHh
Q 042503 450 GRWDDAETLRMWMRE 464 (477)
Q Consensus 450 g~~~~A~~~~~~~~~ 464 (477)
|++++|...+++.++
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555555544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.89 E-value=8.3e-09 Score=90.75 Aligned_cols=195 Identities=9% Similarity=-0.040 Sum_probs=148.0
Q ss_pred cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHh-cCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHH
Q 042503 245 LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK-CGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYE 323 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (477)
.|++++|..+++++.+.. +.. +.+ .++++.|...|.+ ....|...|++++|...+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHH
Confidence 567778888888877654 211 112 4778888877654 4677889999999999999
Q ss_pred HHHHcCC---CC--CHHHHHHHHHHhhccccHHHHHHHHHHhhhcc---CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 042503 324 QMIAKGV---SP--NKATFVGVLTCCAHAGLVEKARELFASMTGLH---SIVP-NLEHYGCMVDVLGRSGCVREAYDLIR 394 (477)
Q Consensus 324 ~m~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 394 (477)
+..+... .+ -..+|..+..+|...|++++|+..|++..+.. |.+. ...++..+...|.. |++++|+..|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 8876311 11 14578888899999999999999999876422 1111 13577888999988 99999999999
Q ss_pred hc-CCCC---C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC------chHHHHHHHHHhcCCchHHHHHHH
Q 042503 395 SM-SIRP---N----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS------GNYVLLSNIYAEGGRWDDAETLRM 460 (477)
Q Consensus 395 ~~-~~~p---~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~ 460 (477)
+. .+.| + ..++..+...+...|++++|+..++++++..|.+. ..+..++.++...|++++|...++
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 87 1111 1 46788899999999999999999999998765443 266777788888999999999999
Q ss_pred HHH
Q 042503 461 WMR 463 (477)
Q Consensus 461 ~~~ 463 (477)
+.+
T Consensus 220 ~al 222 (307)
T 2ifu_A 220 ESY 222 (307)
T ss_dssp HHT
T ss_pred HHh
Confidence 998
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.5e-08 Score=88.72 Aligned_cols=130 Identities=12% Similarity=-0.015 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC-------------ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCC
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP-------------NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIR 399 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 399 (477)
...+..+...+.+.|++++|+..|++..+.....+ ....|..+..+|.+.|++++|+..+++. ...
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33445555555555555555555555553211000 1467888999999999999999999988 333
Q ss_pred -CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHH-HHHHHHHH
Q 042503 400 -PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDA-ETLRMWMR 463 (477)
Q Consensus 400 -p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 463 (477)
.+...+..+..++...|++++|+..|+++++++|.++.++..++.++.+.|++++| ...+++|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999998 45666664
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=6.1e-09 Score=80.40 Aligned_cols=117 Identities=10% Similarity=-0.055 Sum_probs=93.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCC
Q 042503 321 LYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIR 399 (477)
Q Consensus 321 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 399 (477)
.++++.... +.+...+..+...+...|++++|+..|+++.... +.+...|..+..+|...|++++|+..|++. ...
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344444432 3345567778888899999999999999987432 557788888999999999999999999998 444
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 400 P-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 400 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
| +...+..++.++...|++++|+..|+++++..|.++....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 4 5678888999999999999999999999999998776543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.8e-08 Score=77.58 Aligned_cols=122 Identities=11% Similarity=0.062 Sum_probs=99.7
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHH-HHHcCCh--
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSS-CRTHGHV-- 418 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~-~~~~~~~-- 418 (477)
+...|++++|...+++..+.. +.+...+..+...|...|++++|...|++. .. +.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 456788889999998887432 556788889999999999999999999988 33 3356788888888 7788998
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 042503 419 ELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 467 (477)
++|...++++++.+|.++..+..++.+|...|++++|...+++.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999988753
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-08 Score=74.74 Aligned_cols=95 Identities=14% Similarity=-0.041 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (477)
.+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556778889999999999999998 4444 6788999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 042503 450 GRWDDAETLRMWMRENN 466 (477)
Q Consensus 450 g~~~~A~~~~~~~~~~~ 466 (477)
|++++|...+++.++..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-09 Score=86.83 Aligned_cols=131 Identities=10% Similarity=-0.043 Sum_probs=90.8
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCC--------------ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-C
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVP--------------NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-R 399 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~ 399 (477)
.+..+...+...|++++|...|++..+...-.| ....+..+..+|.+.|++++|+..+++. .. +
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 344444455555555555555555543211111 1267788888999999999999999988 33 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHH-HHHHHHHhCC
Q 042503 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAE-TLRMWMRENN 466 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 466 (477)
.+...+..++.++...|++++|...++++++..|.++.++..+..++...|+.+++. ..+..+...+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 466889999999999999999999999999999999999999999999999888887 5666665544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=84.58 Aligned_cols=193 Identities=10% Similarity=-0.132 Sum_probs=128.3
Q ss_pred ccCcccchHHHHHHHHHhCCccchhHHHHHH-------HHHHHhcCChHHHHHHhccCCCCCc-----------------
Q 042503 244 RLGAVDIGQWIHSYAESSGLYRKVVSVGNAL-------VDFYCKCGILDTARNVFKEIPRKNV----------------- 299 (477)
Q Consensus 244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~----------------- 299 (477)
..++.+.|.+.|.++.... |.....|..+ ...+.+.++..+++..+....+-.+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 4567777777777777777 7777777766 5666666666666665555443100
Q ss_pred -------eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC--h
Q 042503 300 -------VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN--L 370 (477)
Q Consensus 300 -------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~ 370 (477)
..+-.+...+...|++++|.++|..+...+ |+......+...+.+.+++++|+..|+.... .. .|. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~ 171 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAG 171 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHH
Confidence 012334566777888888888888776543 4333555555677788888888888875552 11 111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc--CCC-CC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHH
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM--SIR-PN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLS 443 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 443 (477)
..+..+..++.+.|++++|++.|++. +.. |. .........++.+.|+.++|...|+++...+|. +.....|.
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 35667778888888888888888887 222 43 346667777888888888888888888888886 55555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-07 Score=73.09 Aligned_cols=102 Identities=10% Similarity=-0.052 Sum_probs=88.2
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLS 410 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 410 (477)
+...+..+...+.+.|++++|+..|+++.+.. |.+...|..+..+|...|++++|+..|++. ...| ++..|..++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 45567788888999999999999999998532 567888999999999999999999999998 4444 4578999999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 411 SCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
+|...|++++|+..|++++++.|+++
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999998743
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-07 Score=81.29 Aligned_cols=160 Identities=11% Similarity=-0.034 Sum_probs=120.7
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCC---c------eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-CC----HHHH
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKN---V------VSWNAMISGLAFNGRGELGVELYEQMIAKGVS-PN----KATF 337 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~---~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~ 337 (477)
...+..+...|++++|...+++..+.. . ..+..+...+...|++++|+..+++....... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 344677888999999999988765421 1 12334566667778999999999999884322 22 3368
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhcc----CCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCCC-HHH
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLH----SIVPN-LEHYGCMVDVLGRSGCVREAYDLIRSM-------SIRPN-AAI 404 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~ 404 (477)
+.+..+|...|++++|...|+++.+.. +..+. ..++..+...|.+.|++++|+..+++. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 899999999999999999999887311 11222 347888999999999999999999887 22233 578
Q ss_pred HHHHHHHHHHcCC-hHHHHHHHHHHHhc
Q 042503 405 WGSLLSSCRTHGH-VELAEHAVKELINL 431 (477)
Q Consensus 405 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~ 431 (477)
+..++.++...|+ +++|.+.+++++.+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999995 69999999998764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=6.3e-08 Score=73.59 Aligned_cols=95 Identities=12% Similarity=-0.065 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
...+..+...+...|++++|...|++. .. +.+...+..++.++...|++++|...++++++.+|.++..+..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 344444444444555555555544444 11 2223444445555555555555555555555555555555555555555
Q ss_pred hcCCchHHHHHHHHHHh
Q 042503 448 EGGRWDDAETLRMWMRE 464 (477)
Q Consensus 448 ~~g~~~~A~~~~~~~~~ 464 (477)
..|++++|...+++.++
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.81 E-value=6.1e-08 Score=79.35 Aligned_cols=152 Identities=11% Similarity=0.023 Sum_probs=72.7
Q ss_pred cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhc---cCC-CCChHHHHHHHHHHHhcCCHH
Q 042503 312 NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGL---HSI-VPNLEHYGCMVDVLGRSGCVR 387 (477)
Q Consensus 312 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~ 387 (477)
.|++++|.++++.+.. ........+..+...+...|++++|...+++..+. .+. +....++..+...|...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4455555553333222 11123444555555555555555555555554421 011 112234455555555666666
Q ss_pred HHHHHHHhc-CC---CC-C----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--CC----CchHHHHHHHHHhcCCc
Q 042503 388 EAYDLIRSM-SI---RP-N----AAIWGSLLSSCRTHGHVELAEHAVKELINLEP--WN----SGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 388 ~A~~~~~~~-~~---~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~~ 452 (477)
+|.+.+++. .. .+ + ...+..+...+...|++++|...++++++..+ .+ ..++..++.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 665555554 10 11 1 13455555566666666666666666654321 11 11235566666666666
Q ss_pred hHHHHHHHHHHh
Q 042503 453 DDAETLRMWMRE 464 (477)
Q Consensus 453 ~~A~~~~~~~~~ 464 (477)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=4.3e-08 Score=77.22 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=94.7
Q ss_pred CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHH
Q 042503 332 PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLL 409 (477)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 409 (477)
.+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++. ...| +...|..+.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 356678888899999999999999999998532 457788999999999999999999999998 4444 478899999
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
.++...|++++|...|+++++++|.++..+...+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 999999999999999999999999998866555433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2e-08 Score=76.96 Aligned_cols=110 Identities=11% Similarity=-0.004 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLS 410 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 410 (477)
+...+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|+..|++. ...| ++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 34455666777888899999999998887432 456778888888899999999999999888 3333 4577888899
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 411 SCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
++...|++++|...++++++..|.++........
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 9999999999999999999999987766554433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-07 Score=79.38 Aligned_cols=135 Identities=12% Similarity=0.039 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHhcccCC--CchHHhHHHHHHHHhcCChHHHHHHHHhcCCC-C----hhhHHHHHHHHHh
Q 042503 137 IRIGVVELYTSCGQMDDGMKVFDEMSH--RDVIVRNLMIHGFCKKGDVDKGLYLFREMRER-S----VVSWNLMISSLGK 209 (477)
Q Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~----~~~~~~l~~~~~~ 209 (477)
....+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... + ...+..+..++..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 344567788899999999999999875 54446666677888999999999999877652 2 2367778889999
Q ss_pred cCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHH
Q 042503 210 SGRDSEALRLFHEMRDQAFELD--EATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNAL 274 (477)
Q Consensus 210 ~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 274 (477)
.|++++|+..|++.......|. .........++.+.|+.++|...|+++.... |. ..++..|
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~-~~~~~aL 247 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PE-PKVAAAL 247 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CC-HHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHH
Confidence 9999999999998875433253 3345566667788888888988888888887 44 4444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-07 Score=68.57 Aligned_cols=109 Identities=15% Similarity=0.098 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHH
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSC 412 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 412 (477)
..+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++. ...| +...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344445555555666666666666555321 234455555555566666666666666555 2222 345555666666
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
...|++++|...++++++.+|.++..+..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666666666666666666666655555554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-07 Score=69.98 Aligned_cols=98 Identities=10% Similarity=0.061 Sum_probs=88.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
....+..+...+...|++++|...|++. .. +.+...+..++..+...|++++|...++++++..|.++..+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999998 33 346788999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 042503 447 AEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~ 466 (477)
...|++++|...+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999998764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.6e-08 Score=71.37 Aligned_cols=112 Identities=8% Similarity=-0.117 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHH
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSS 411 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 411 (477)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...+..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4456677777888888888888888887432 456778888888888999999999888887 4344 46788889999
Q ss_pred HHHcCChHHHHHHHHHHHhcC------CCCCchHHHHHHHHH
Q 042503 412 CRTHGHVELAEHAVKELINLE------PWNSGNYVLLSNIYA 447 (477)
Q Consensus 412 ~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 447 (477)
+...|++++|...++++++.+ |.++.....+..+..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999999999988 777777776666543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.4e-07 Score=72.04 Aligned_cols=93 Identities=16% Similarity=0.064 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (477)
.+..+...+.+.|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++++|.++..+..++.+|...
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 92 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM 92 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444444444444444444444444 2222 3344444444444444444444444444444444444444444444444
Q ss_pred CCchHHHHHHHHHHh
Q 042503 450 GRWDDAETLRMWMRE 464 (477)
Q Consensus 450 g~~~~A~~~~~~~~~ 464 (477)
|++++|...+++.++
T Consensus 93 g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 93 ADYKGAKEAYEKGIE 107 (164)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 444444444444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.5e-06 Score=72.47 Aligned_cols=224 Identities=9% Similarity=-0.008 Sum_probs=128.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhhccC-cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhc-C-ChH
Q 042503 210 SGRDSEALRLFHEMRDQAFELDE-ATVVAVLPICARLG-AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKC-G-ILD 285 (477)
Q Consensus 210 ~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 285 (477)
.+..++|+.+++.++.. .|+. ..++.--.++...| .++++..+++.+.... |.+..+|+.-...+... + +++
T Consensus 67 ~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 67 EEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred CCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChH
Confidence 34445666666666654 3332 23344334444445 3666666666666666 67777777666666665 5 777
Q ss_pred HHHHHhccCCCCCc---eeHHHHHHHHHhcCCch--------HHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc-----
Q 042503 286 TARNVFKEIPRKNV---VSWNAMISGLAFNGRGE--------LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL----- 349 (477)
Q Consensus 286 ~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----- 349 (477)
+++.+++++.+.++ .+|+.-.-.+.+.|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 78888877776443 44554444444555555 7888888888876 5577777777777666664
Q ss_pred --HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCH--------------------HHHHHHHHhc-CC-------C
Q 042503 350 --VEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCV--------------------REAYDLIRSM-SI-------R 399 (477)
Q Consensus 350 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~-------~ 399 (477)
++++++.++++.... +-|...|+.+-..+.+.|+. .+...+..++ +. .
T Consensus 222 ~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred HHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 677777777776422 45556666655555555543 2233333333 11 2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCCCCchHH
Q 042503 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELI-NLEPWNSGNYV 440 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~ 440 (477)
+++..+..++..|...|+.++|.++++.+. +.+|.....|.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 344555555666666666666666666654 44554443333
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.9e-08 Score=73.01 Aligned_cols=93 Identities=5% Similarity=-0.060 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-------hHHHH
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG-------NYVLL 442 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 442 (477)
.+..+...+.+.|++++|+..|++. .+.| +...|..++.+|...|++++|++.++++++++|.++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3444555555555666665555555 2222 3445555556666666666666666666655544432 34445
Q ss_pred HHHHHhcCCchHHHHHHHHHHh
Q 042503 443 SNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 443 ~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+.++...|++++|++.+++.++
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555556666666666655544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.3e-08 Score=72.07 Aligned_cols=100 Identities=13% Similarity=0.020 Sum_probs=90.7
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 367 VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
+.+...+..+...+...|++++|.+.|++. ...| +...+..++..+...|++++|...++++++..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345667888999999999999999999998 5444 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhCC
Q 042503 445 IYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
++.+.|++++|.+.+++.++..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-07 Score=72.48 Aligned_cols=111 Identities=12% Similarity=-0.056 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWG 406 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 406 (477)
+...+..+...+...|++++|...|++..+ . .|+ ...+..+..+|...|++++|+..+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG-L--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT-S--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-H--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 455566666666666666666666666653 1 233 455566666666666666666666665 2222 445566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
.+..++...|++++|...++++++..|.++..+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666666666666666666666666666655555554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-07 Score=69.96 Aligned_cols=97 Identities=21% Similarity=0.239 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM-S-IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
...+..+...+...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++++..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999998 3 34467889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 042503 448 EGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 448 ~~g~~~~A~~~~~~~~~~~ 466 (477)
..|++++|...++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.73 E-value=7.2e-08 Score=78.92 Aligned_cols=154 Identities=12% Similarity=0.004 Sum_probs=102.6
Q ss_pred HhcCChHHHHH---HhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHc----CC-CCCHHHHHHHHHHhhccccH
Q 042503 279 CKCGILDTARN---VFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK----GV-SPNKATFVGVLTCCAHAGLV 350 (477)
Q Consensus 279 ~~~~~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~l~~~~~~~~~~ 350 (477)
...|++++|.+ .+..-.......+..+...+...|++++|...+++.... +. +....++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34566777776 544422234456777777777888888888888777662 11 12345677777888888899
Q ss_pred HHHHHHHHHhhhc---cCCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCCH----HHHHHHHHHHHHcCC
Q 042503 351 EKARELFASMTGL---HSIVP--NLEHYGCMVDVLGRSGCVREAYDLIRSM----SIRPNA----AIWGSLLSSCRTHGH 417 (477)
Q Consensus 351 ~~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~----~~~~~l~~~~~~~~~ 417 (477)
++|...+++..+. .+..| ....+..+...+...|++++|.+.+++. ...++. .++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888877642 22111 2345777888888899999998888876 112222 345778888889999
Q ss_pred hHHHHHHHHHHHhcC
Q 042503 418 VELAEHAVKELINLE 432 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~ 432 (477)
+++|.+.+++++++.
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-06 Score=76.73 Aligned_cols=215 Identities=11% Similarity=0.020 Sum_probs=160.0
Q ss_pred CcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcC-ChHHHHHHhccCCCC---CceeHHHHHHHHHhc-C-CchHHH
Q 042503 246 GAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCG-ILDTARNVFKEIPRK---NVVSWNAMISGLAFN-G-RGELGV 319 (477)
Q Consensus 246 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~~a~ 319 (477)
+..++|..++..+...+ |.+..+|+.-...+...| .+++++..++.+... +..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 34457888999999998 889999998888888888 599999999998764 445666666666665 6 899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhhccccHH--------HHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC------
Q 042503 320 ELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE--------KARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC------ 385 (477)
Q Consensus 320 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 385 (477)
.+++++.+.. +-|...|+.-..++.+.|.++ ++++.++++.+.. +-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccccccchH
Confidence 9999999876 667888877666666666665 8999999988533 5577788887777777776
Q ss_pred -HHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHhcC------CCCC
Q 042503 386 -VREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHV--------------------ELAEHAVKELINLE------PWNS 436 (477)
Q Consensus 386 -~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~ 436 (477)
++++++.++++ .. +-|...|+.+-..+.+.|.. .........++... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68899998887 33 44567787777767666654 23333333333332 4567
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.++..++.+|...|+.++|.++++.+.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 78999999999999999999999999754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=6e-08 Score=83.93 Aligned_cols=187 Identities=6% Similarity=-0.106 Sum_probs=107.4
Q ss_pred HHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHh
Q 042503 235 VVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAF 311 (477)
Q Consensus 235 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 311 (477)
+..+...+...|+++.|...+..+.+.. |.+...+..+..+|.+.|++++|...+++..+ .+...+..+..++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3344444444555555555555555544 66667777777788888888888888777665 244567777888888
Q ss_pred cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHH
Q 042503 312 NGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYD 391 (477)
Q Consensus 312 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 391 (477)
.|++++|...|++..+.+ +.+...+...+....+. ..+... .... ....+.+......+... ..|+.++|++
T Consensus 85 ~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~~-~~~~-~~~~~~~~~i~~~l~~l--~~~~~~~A~~ 156 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKRW-NSIE-ERRIHQESELHSYLTRL--IAAERERELE 156 (281)
T ss_dssp TTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHHH-HHHH-HTCCCCCCHHHHHHHHH--HHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHHH-HHHH-HHHHhhhHHHHHHHHHH--HHHHHHHHHH
Confidence 888888888888877642 11111111111111111 111111 1122 12334555554444332 3688899998
Q ss_pred HHHhc-CCCCCHHHH-HHHHHHHHHc-CChHHHHHHHHHHHhc
Q 042503 392 LIRSM-SIRPNAAIW-GSLLSSCRTH-GHVELAEHAVKELINL 431 (477)
Q Consensus 392 ~~~~~-~~~p~~~~~-~~l~~~~~~~-~~~~~a~~~~~~~~~~ 431 (477)
.+++. ...|+.... ..+...+.+. +.+++|.++|+++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88887 666765433 3333334444 6688899999888653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.69 E-value=6e-07 Score=70.58 Aligned_cols=127 Identities=11% Similarity=-0.022 Sum_probs=98.2
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHH
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVL 380 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (477)
.+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 46667777888888999999888888765 5577888888888889999999999998887432 45677888888899
Q ss_pred HhcCCHHHHHHHHHhc-CCCC-CHHHHH--HHHHHHHHcCChHHHHHHHHHHHh
Q 042503 381 GRSGCVREAYDLIRSM-SIRP-NAAIWG--SLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 381 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
...|++++|.+.|++. ...| +...+. ..+..+...|++++|...+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999888 3333 444453 334447778999999998887754
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-07 Score=70.39 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=89.1
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 368 PNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 368 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
.+...+..+...+...|++++|...+++. .. +.+...+..++..+...|++++|...++++++..|.++..+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567788889999999999999999998 33 44678899999999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhCC
Q 042503 446 YAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+.+.|++++|...+++..+..
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999998764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-07 Score=72.03 Aligned_cols=62 Identities=11% Similarity=-0.042 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINL-------EPWNSGNY----VLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.|..+..++.+.|++++|+..+++++++ +|++...| ...+.++...|++++|+..|++.++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666777777777777777777777777 77777777 77777777777777777777776653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=6.1e-07 Score=68.95 Aligned_cols=100 Identities=13% Similarity=0.007 Sum_probs=83.5
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHH
Q 042503 367 VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVL 441 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 441 (477)
+.+...+..+...+...|++++|.+.|++. ...|+ ...+..+..++...|++++|+..++++++..|.++..+..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 445677778888888889999999888888 66676 5677888888888899999999999988888888888888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 442 LSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
++.+|...|++++|...+++.++..
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8888888999999998888887653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=71.09 Aligned_cols=100 Identities=18% Similarity=0.094 Sum_probs=58.3
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhccCCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC----HHHHHHHHH
Q 042503 339 GVLTCCAHAGLVEKARELFASMTGLHSIVPNL---EHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN----AAIWGSLLS 410 (477)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 410 (477)
.+...+...|++++|...|+.+.+.. +.+. ..+..+..++.+.|++++|...|++. ...|+ ...+..++.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34455566667777777766666322 1222 35555666666666666666666665 22232 445566666
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 411 SCRTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
++...|++++|...++++++..|+++....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 666666666666666666666665544433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.1e-07 Score=69.67 Aligned_cols=113 Identities=9% Similarity=-0.130 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHH
Q 042503 331 SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSL 408 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 408 (477)
+.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++. ...| +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 4467778888888888899999998888887432 455778888888888999999999988887 3333 56788889
Q ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC-----CCchHHHHHHH
Q 042503 409 LSSCRTHGHVELAEHAVKELINLEPW-----NSGNYVLLSNI 445 (477)
Q Consensus 409 ~~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~ 445 (477)
..++...|++++|...++++++..|. +......+..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~ 125 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 125 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988876 44444444444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.8e-08 Score=86.38 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=80.3
Q ss_pred cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHH
Q 042503 245 LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELY 322 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (477)
.++++.|...++...... +.....+..+...+.+.|++++|+..|++..+ |+...+ ..+.+..+
T Consensus 126 L~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~~~~~~- 191 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-----------SNEEAQKA- 191 (336)
T ss_dssp EEEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-----------CSHHHHHH-
T ss_pred EeecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-----------ChHHHHHH-
Confidence 455566665555544433 45555666666666666666666666665442 211000 00000000
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-
Q 042503 323 EQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP- 400 (477)
Q Consensus 323 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 400 (477)
. +.....+..+..++.+.|++++|+..++++.+.. +.+...+..+..+|...|++++|+..|++. ...|
T Consensus 192 ~-------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 192 Q-------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred H-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 0 0003445555555555666666666665555321 334555555555666666666666666555 2222
Q ss_pred CHHHHHHHHHHHHHcCChHHH-HHHHHHHH
Q 042503 401 NAAIWGSLLSSCRTHGHVELA-EHAVKELI 429 (477)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 429 (477)
+...+..+..++...|+.++| ...++++.
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555665555 33444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-07 Score=85.34 Aligned_cols=129 Identities=10% Similarity=0.003 Sum_probs=93.6
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC-------------ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-C
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP-------------NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-R 399 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~ 399 (477)
..+..+...+.+.|+++.|+..|+++.+.....+ ....|..+..+|.+.|++++|+..+++. .. +
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 3444555555556666666666655553221111 1467888999999999999999999988 33 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH-HHHHHH
Q 042503 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAET-LRMWMR 463 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~ 463 (477)
.+...|..+..+|...|++++|+..|+++++++|.+..++..++.++.+.|++++|.+ .+++|.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999999999988764 455543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=9.1e-06 Score=70.73 Aligned_cols=192 Identities=9% Similarity=0.010 Sum_probs=112.9
Q ss_pred ccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCC--hHHHHHHhccCCC---CCceeHHHHHHHHHhcCC-chHHHHH
Q 042503 248 VDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI--LDTARNVFKEIPR---KNVVSWNAMISGLAFNGR-GELGVEL 321 (477)
Q Consensus 248 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~ 321 (477)
++.+..+++.+.... |.+..+|+.-.-.+...++ +++++.+++++.+ .|..+|+.-.-.+...|. +++++..
T Consensus 90 l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 345566666666665 6677777666666666663 6677777776654 344556555556666676 4778888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhcc--------------ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhc----
Q 042503 322 YEQMIAKGVSPNKATFVGVLTCCAHA--------------GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRS---- 383 (477)
Q Consensus 322 ~~~m~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 383 (477)
++++++.. +-|...|+.....+... +.++++++.+....... |-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCcc
Confidence 88888775 55666666555444433 45677777777776322 44555555443333333
Q ss_pred -------CCHHHHHHHHHhc-CCCCCHHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 384 -------GCVREAYDLIRSM-SIRPNAAIWGSLLSSC-----RTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 384 -------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
+.++++++.++++ ...||. .|..+..+. ...|..+++...+.++++++|....-|..+...
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3456666666666 445554 233222211 124566677777777777777655555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.3e-08 Score=71.30 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=53.1
Q ss_pred cccHHHHHHHHHHhhhccC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHH
Q 042503 347 AGLVEKARELFASMTGLHS--IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 422 (477)
.|++++|+..|++..+ .+ .+.+...+..+..+|...|++++|++.|++. ...| +...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4666667777776663 21 1223445666666666777777777766666 2223 3456666666666677777777
Q ss_pred HHHHHHHhcCCCCCch
Q 042503 423 HAVKELINLEPWNSGN 438 (477)
Q Consensus 423 ~~~~~~~~~~p~~~~~ 438 (477)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 7777776666665543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=9.7e-06 Score=70.57 Aligned_cols=180 Identities=12% Similarity=0.041 Sum_probs=130.4
Q ss_pred hHHHHHHhccCCC---CCceeHHHHHHHHHhcCC--chHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc-HHHHHHHH
Q 042503 284 LDTARNVFKEIPR---KNVVSWNAMISGLAFNGR--GELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL-VEKARELF 357 (477)
Q Consensus 284 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 357 (477)
+++++.+++.+.. .+..+|+.-...+.+.++ +++++.+++++.+.. +-|...|+.-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5677777777664 355677777777777774 789999999999987 6688888877777777787 68999999
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhc--------------CCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHc------
Q 042503 358 ASMTGLHSIVPNLEHYGCMVDVLGRS--------------GCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTH------ 415 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~------ 415 (477)
+.+.+.. +-|...|+.....+.+. +.++++++.+.+. .. +-|...|+-+-..+...
T Consensus 169 ~~~I~~~--p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC--SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 9998533 55666776665555544 4578899998888 33 44566776555555444
Q ss_pred -----CChHHHHHHHHHHHhcCCCCCchHHHHHHHH---HhcCCchHHHHHHHHHHhCC
Q 042503 416 -----GHVELAEHAVKELINLEPWNSGNYVLLSNIY---AEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 416 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~ 466 (477)
+.++++++.++++++..|++.-++..++... ...|..++....+.++++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4578999999999999998754444443322 24678889999999998653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.3e-07 Score=68.65 Aligned_cols=95 Identities=11% Similarity=0.003 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------CchHHH
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN-------SGNYVL 441 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 441 (477)
..+..+...+...|++++|...|++. ..+.+...+..++..+...|++++|...++++++..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34556666677777777777777766 223355667777777777777777777777777776655 666777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhC
Q 042503 442 LSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++.+|.+.|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777777777777777777664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.9e-07 Score=64.76 Aligned_cols=102 Identities=17% Similarity=0.065 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC---CHHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP---NAAIWGSL 408 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l 408 (477)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++. ...| +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 34455666677777788888888887776422 345667777778888888888888888877 3334 46778888
Q ss_pred HHHHHHc-CChHHHHHHHHHHHhcCCCCC
Q 042503 409 LSSCRTH-GHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 409 ~~~~~~~-~~~~~a~~~~~~~~~~~p~~~ 436 (477)
..++... |++++|.+.++++++..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888888 888888888888888887654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.2e-07 Score=71.97 Aligned_cols=112 Identities=12% Similarity=-0.040 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhcc------C----------CCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLH------S----------IVPNLEHYGCMVDVLGRSGCVREAYDLIRSM- 396 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 396 (477)
...+......+.+.|++++|+..|.+..+.. . .+.+...|..+..+|.+.|++++|+..+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4456677777888888888888888776420 0 0112345666677777777777777777766
Q ss_pred CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC-chHHHHHHH
Q 042503 397 SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNS-GNYVLLSNI 445 (477)
Q Consensus 397 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 445 (477)
...| +...|..++.++...|++++|...|+++++++|.++ .....+..+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3333 456667777777777777777777777777777665 334444333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=80.90 Aligned_cols=190 Identities=7% Similarity=-0.060 Sum_probs=130.7
Q ss_pred HHHHHhcCChHHHHHHhccCCCC-----Cc---------------eeHHHHHHHHHhcCCchHHHHHHHHHHHc-CCCCC
Q 042503 275 VDFYCKCGILDTARNVFKEIPRK-----NV---------------VSWNAMISGLAFNGRGELGVELYEQMIAK-GVSPN 333 (477)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~~-----~~---------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~ 333 (477)
...+.+.|++++|++.|..+.+. +. .++..++..|...|++++|..++..+... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34455566666666666554321 00 12667888888999999999988887652 11122
Q ss_pred H----HHHHHHHHHhhccccHHHHHHHHHHhhhc---cCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-----CC--
Q 042503 334 K----ATFVGVLTCCAHAGLVEKARELFASMTGL---HSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-----SI-- 398 (477)
Q Consensus 334 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~-- 398 (477)
. ...+.+...+...|+++.+..+++..... .+..+ -..++..+...|...|++++|..++++. +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 22334445556778899999888876531 12222 2457788899999999999999998877 11
Q ss_pred CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCC----CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 399 RPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLE---PWN----SGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 399 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+|. ...+..++..|...|++++|..+++++.... +.+ ...+..++..+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 222 3578888999999999999999999987654 222 23566777778889999999988877754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.56 E-value=7.9e-07 Score=66.56 Aligned_cols=111 Identities=10% Similarity=-0.015 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC----CCC----HHHH
Q 042503 335 ATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI----RPN----AAIW 405 (477)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~ 405 (477)
..+..+...+...|+++.|...|++..+.. +.+...+..+...|...|++++|...+++. .. .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 455666667777777777777777776322 445666777777777788888887777776 11 222 5677
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE 448 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (477)
..++.++...|++++|...++++++..| ++.....+..+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 8888888888999999999999888887 56666666665543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.8e-07 Score=86.04 Aligned_cols=119 Identities=13% Similarity=0.062 Sum_probs=98.5
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCC
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGH 417 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 417 (477)
+...+.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++++|++.+++. ...| +...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3445677899999999999888532 455788899999999999999999999988 4444 56789999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHH--HHhcCCchHHHHHHH
Q 042503 418 VELAEHAVKELINLEPWNSGNYVLLSNI--YAEGGRWDDAETLRM 460 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 460 (477)
+++|++.++++++..|.++.++..++.+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999888 888999999999987
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=8.7e-07 Score=66.10 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=48.8
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC----CCC----HHHHHH
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SI----RPN----AAIWGS 407 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 407 (477)
+..+...+.+.|++++|+..|++..+.. |.+...|..+..+|.+.|++++|++.+++. .+ .++ ..+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3344444555555555555555544221 233444555555555555555555555444 11 111 124555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 408 LLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 408 l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
++.++...|++++|++.|+++++..|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 66666666677777777776666655
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-06 Score=64.72 Aligned_cols=92 Identities=18% Similarity=0.137 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---CchHHHHHHH
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM-SIRPNA----AIWGSLLSSCRTHGHVELAEHAVKELINLEPWN---SGNYVLLSNI 445 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~ 445 (477)
..+...+...|++++|...|++. ...|+. ..+..++.++...|++++|...++++++..|.+ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556677777788887777776 222322 466667777777778888888888777777777 5667777777
Q ss_pred HHhcCCchHHHHHHHHHHhC
Q 042503 446 YAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 446 ~~~~g~~~~A~~~~~~~~~~ 465 (477)
|.+.|++++|...++++++.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77778888887777777664
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=8.3e-07 Score=65.54 Aligned_cols=97 Identities=10% Similarity=0.027 Sum_probs=62.8
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHc
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTH 415 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 415 (477)
..+...+.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..|++. ...| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344555666777777777777776422 445666677777777777777777777776 3344 456777777777888
Q ss_pred CChHHHHHHHHHHHhcCCCCC
Q 042503 416 GHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 416 ~~~~~a~~~~~~~~~~~p~~~ 436 (477)
|++++|+..++++++.+|.++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888887777643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.9e-07 Score=81.86 Aligned_cols=149 Identities=11% Similarity=-0.033 Sum_probs=82.9
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV 379 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (477)
..+..+...+.+.|++++|...|++.... .|+... +...++.+++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 34566666777788888888888887765 333321 23344444443322 1 1378889999
Q ss_pred HHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhcCCchHHH
Q 042503 380 LGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY-AEGGRWDDAE 456 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 456 (477)
|.+.|++++|+..+++. ...| +...|..+..+|...|++++|+..|+++++++|.++.++..+..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998 4444 6789999999999999999999999999999999999999998884 4567788899
Q ss_pred HHHHHHHhCCCc
Q 042503 457 TLRMWMRENNVK 468 (477)
Q Consensus 457 ~~~~~~~~~~~~ 468 (477)
..++++......
T Consensus 320 ~~~~~~l~~~p~ 331 (338)
T 2if4_A 320 EMYKGIFKGKDE 331 (338)
T ss_dssp ------------
T ss_pred HHHHHhhCCCCC
Confidence 999999876533
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.50 E-value=9.1e-07 Score=69.10 Aligned_cols=130 Identities=14% Similarity=-0.026 Sum_probs=82.4
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc----CCCCC----HH
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM----SIRPN----AA 403 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 403 (477)
++..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++. ...++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555566666666666666655431110111 135566666777777777777777665 11111 34
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEP------WNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.+..+...+...|++++|...++++++..+ .....+..++..+...|++++|.+.+++.++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 566777778888888888888888876532 11346778888888888888888888877653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.49 E-value=9.4e-07 Score=79.48 Aligned_cols=90 Identities=13% Similarity=-0.014 Sum_probs=80.2
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
+...|..+..+|.+.|++++|++.+++. ...| +...+..+..+|...|++++|+..|+++++++|.++..+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888999999999999999999998 5555 5678999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHH
Q 042503 447 AEGGRWDDAETL 458 (477)
Q Consensus 447 ~~~g~~~~A~~~ 458 (477)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999888877653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-07 Score=75.10 Aligned_cols=126 Identities=11% Similarity=0.005 Sum_probs=81.8
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHhhccccHHHHHHHHHHhhhcc
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPN----------------KATFVGVLTCCAHAGLVEKARELFASMTGLH 364 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 364 (477)
.+..+...+...|++++|...|++..... +.+ ...+..+..++...|++++|+..+++..+.
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~- 117 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI- 117 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-
Confidence 45555666667777777777777776642 112 266777788888888888888888888743
Q ss_pred CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Q 042503 365 SIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAE-HAVKELI 429 (477)
Q Consensus 365 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~ 429 (477)
.+.+...+..+..+|...|++++|.+.|++. ...| +...+..+..++...++.+++. ..+..+.
T Consensus 118 -~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 -DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp -STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred -CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2456677888888888888888888888887 3344 4566666766666666666555 4444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.5e-07 Score=69.53 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
..|..+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...+++.++.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 345555555555555555555555555555555555555555555555555555555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.7e-07 Score=67.84 Aligned_cols=83 Identities=18% Similarity=0.159 Sum_probs=57.1
Q ss_pred cCCHHHHHHHHHhc-CC---CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHH
Q 042503 383 SGCVREAYDLIRSM-SI---RPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAET 457 (477)
Q Consensus 383 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 457 (477)
.|++++|+..|++. .. .|+ ...+..++.++...|++++|+..++++++.+|.++.++..++.+|.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56677777777776 43 232 35667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhC
Q 042503 458 LRMWMREN 465 (477)
Q Consensus 458 ~~~~~~~~ 465 (477)
.+++.++.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.4e-07 Score=68.55 Aligned_cols=93 Identities=13% Similarity=-0.038 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------CchHH
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN------SGNYV 440 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 440 (477)
+...+..+...+...|++++|++.|++. .. +.+...+..+..++...|++++|+..++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567777888889999999999999888 33 3467888899999999999999999999999999988 77888
Q ss_pred HHHHHHHhcCCchHHHHHHHH
Q 042503 441 LLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 441 ~l~~~~~~~g~~~~A~~~~~~ 461 (477)
.++.++...|+.++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888888887666544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-06 Score=65.01 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=80.3
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhccCCCC-----C-----hHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-------
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMTGLHSIVP-----N-----LEHYGCMVDVLGRSGCVREAYDLIRSM-SI------- 398 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------- 398 (477)
+......+.+.|++++|+..|++..+...-.| + ...|..+..++.+.|++++|+..+++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34445556666777777777766654221111 1 237888888888888888888888777 55
Q ss_pred CCCH-HHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 399 RPNA-AIW----GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 399 ~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
.|+. ..| ...+.++...|++++|+..|++++++.|.+......+..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 7765 577 8999999999999999999999999999988776655544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-06 Score=67.12 Aligned_cols=132 Identities=12% Similarity=0.045 Sum_probs=85.2
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-CC----HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hH
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVS-PN----KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LE 371 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 371 (477)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3455555666666666666666665542100 11 135666777777778888888877776532111111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhc----CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 372 HYGCMVDVLGRSGCVREAYDLIRSM----SIRPN----AAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 372 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
.+..+...+...|++++|.+.+++. ....+ ...+..+...+...|++++|.+.++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5667777888888888888888776 11111 2467778888889999999999999887654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.9e-06 Score=78.74 Aligned_cols=124 Identities=15% Similarity=0.061 Sum_probs=97.1
Q ss_pred HhhccccHHHHHHHHHHhhhcc--CCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHhc---------CCCCCH-HHHH
Q 042503 343 CCAHAGLVEKARELFASMTGLH--SIVP----NLEHYGCMVDVLGRSGCVREAYDLIRSM---------SIRPNA-AIWG 406 (477)
Q Consensus 343 ~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 406 (477)
.+...|++++|+.++++..+.. -+.| ...+++.|..+|...|++++|..++++. ...|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999998888775421 1122 2457889999999999999999988876 334544 5789
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 407 SLLSSCRTHGHVELAEHAVKELIN-----LEPWNSGN---YVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.|+..|...|++++|+.+++++++ ++|++|.+ ...+..++...|++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999975 46776554 4577788889999999999999998743
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.3e-06 Score=59.82 Aligned_cols=64 Identities=23% Similarity=0.197 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 401 NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+...+..++.++...|++++|+..++++++.+|.++.+|..++.+|...|++++|.+.+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4456666777777777777777777777777777777777777777777777777777776654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3.9e-06 Score=58.08 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
+...+..+...+...|++++|+..|++. .. +.+...+..+..++...|++++|...++++++.+|.++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456777778888888888888888887 33 335677888888899999999999999999999998888888888887
Q ss_pred HhcC
Q 042503 447 AEGG 450 (477)
Q Consensus 447 ~~~g 450 (477)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.5e-05 Score=74.31 Aligned_cols=167 Identities=11% Similarity=0.039 Sum_probs=124.5
Q ss_pred HHHHHHhccCCCC---CceeHHHHHHHHHhcCC----------chHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccc--c
Q 042503 285 DTARNVFKEIPRK---NVVSWNAMISGLAFNGR----------GELGVELYEQMIAKGVSPNKATFVGVLTCCAHAG--L 349 (477)
Q Consensus 285 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~ 349 (477)
++|++.++++..- +..+|+.-..++...|+ +++++..++++.+.. +-+..+|..-..++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 4456666555442 23445555555555555 788888888888876 557778877777777888 6
Q ss_pred HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC-CHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHc-----------
Q 042503 350 VEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG-CVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTH----------- 415 (477)
Q Consensus 350 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----------- 415 (477)
++++++.++++.+.. +-+...|+.-..++.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 789999999888533 456677777777777778 888899988888 4444 567787777776653
Q ss_pred ---CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchH
Q 042503 416 ---GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDD 454 (477)
Q Consensus 416 ---~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 454 (477)
+.++++.+.+++++..+|.+..+|..+..++.+.|+.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888655
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-05 Score=74.45 Aligned_cols=160 Identities=10% Similarity=0.006 Sum_probs=121.6
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC
Q 042503 306 ISGLAFNGRGELGVELYEQMIAKGVSPN----------------KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN 369 (477)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 369 (477)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+.+..+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4456788999999999999988532211 124778899999999999999999988753322222
Q ss_pred h----HHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----
Q 042503 370 L----EHYGCMVDVLGRSGCVREAYDLIRSM-------SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLE----- 432 (477)
Q Consensus 370 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 432 (477)
. .+.+.+...+...|++++|..++++. +..+. ..++..++..+...|++++|..+++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23444555666789999999988876 22333 4678889999999999999999999987542
Q ss_pred -CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 433 -PWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 433 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
|.....+..++.+|...|++++|..++++....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 222457889999999999999999999987653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.29 E-value=3e-06 Score=61.84 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=49.5
Q ss_pred HHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 353 ARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 353 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
|+..|++..+. .+.+...+..+...|...|++++|+..|++. ...| +...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556665521 2345566666666777777777777777666 2223 345666666677777777777777777766
Q ss_pred cCCC
Q 042503 431 LEPW 434 (477)
Q Consensus 431 ~~p~ 434 (477)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.28 E-value=6.3e-06 Score=57.03 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 042503 399 RPNAAIWGSLLSSCRTHGH---VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKKSPG 472 (477)
Q Consensus 399 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 472 (477)
++++..+..+..++...++ .++|..+++++++.+|.++.+...++..+.+.|++++|+..|+++.+.... +|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-Ccc
Confidence 4577888888888876655 799999999999999999999999999999999999999999999988755 554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.27 E-value=6.4e-06 Score=76.87 Aligned_cols=116 Identities=12% Similarity=-0.025 Sum_probs=74.1
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHH
Q 042503 308 GLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVR 387 (477)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 387 (477)
.+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|+..+++..+. .+.+...+..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHH
Confidence 3455677777777777777764 445677777777777777777777777777742 2445667777777777777777
Q ss_pred HHHHHHHhc-CCCCC-HHHHHHHHHH--HHHcCChHHHHHHHH
Q 042503 388 EAYDLIRSM-SIRPN-AAIWGSLLSS--CRTHGHVELAEHAVK 426 (477)
Q Consensus 388 ~A~~~~~~~-~~~p~-~~~~~~l~~~--~~~~~~~~~a~~~~~ 426 (477)
+|.+.|++. ...|+ ...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777776 22332 2344444444 667777777777777
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-06 Score=76.88 Aligned_cols=117 Identities=9% Similarity=-0.071 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 042503 333 NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSC 412 (477)
Q Consensus 333 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 412 (477)
....+..+...+.+.|++++|...|++.... .|+.. .+...|+.+++...+. ...|..+..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHH
Confidence 3556777777888888888888888887632 23322 1223344444443332 13788899999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+.|++++|+..++++++.+|.++.++..++.+|...|++++|...+++.++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999987654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-06 Score=80.53 Aligned_cols=155 Identities=12% Similarity=0.011 Sum_probs=74.2
Q ss_pred cCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHH
Q 042503 245 LGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELY 322 (477)
Q Consensus 245 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~ 322 (477)
.+++++|...++...... +.....+..+...+.+.|++++|+..|++..+ |+...+. .+..
T Consensus 247 l~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-----------~~~~---- 309 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS-----------EKES---- 309 (457)
T ss_dssp EEEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC-----------HHHH----
T ss_pred hhhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC-----------hHHH----
Confidence 345556665555444433 44555666666777777777777766665543 2110000 0000
Q ss_pred HHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC
Q 042503 323 EQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN 401 (477)
Q Consensus 323 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 401 (477)
.+.. +.....|..+..++.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|+..|++. .+.|+
T Consensus 310 ~~~~----~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 310 KASE----SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 0000 0013444555555555555555555555555321 334455555555555555555555555555 33333
Q ss_pred H-HHHHHHHHHHHHcCChHHHH
Q 042503 402 A-AIWGSLLSSCRTHGHVELAE 422 (477)
Q Consensus 402 ~-~~~~~l~~~~~~~~~~~~a~ 422 (477)
. ..+..+..++.+.++.+++.
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34455555555555555443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.16 E-value=7.8e-06 Score=73.48 Aligned_cols=114 Identities=9% Similarity=-0.023 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-CHHHHHHHHHHH
Q 042503 334 KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRP-NAAIWGSLLSSC 412 (477)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~ 412 (477)
...+..+...+.+.|++++|+..|++..+.. +.. ......+++. ...| +...|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 3445666666777777777777777666310 000 0000111110 1222 346888999999
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+.|++++|+..++++++.+|.++.++..++.+|.+.|++++|...+++.++..
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999998753
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.9e-06 Score=65.44 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-----------CchHHHHHHHHHHhC
Q 042503 419 ELAEHAVKELINLEPWNSGNYVLLSNIYAEGG-----------RWDDAETLRMWMREN 465 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~ 465 (477)
++|+..|+++++++|+++.+|..++.+|...| ++++|++.|++.++.
T Consensus 63 ~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 63 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 35555555666666555555555665555443 555555555555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=3e-05 Score=58.53 Aligned_cols=112 Identities=7% Similarity=-0.105 Sum_probs=65.7
Q ss_pred ccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHH
Q 042503 348 GLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRT----HGHVELAEH 423 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~ 423 (477)
+++++|...|++..+ .+ .|.. . |...|...+.+++|+++|++.-..-++.....+...|.. .+++++|.+
T Consensus 9 ~d~~~A~~~~~~aa~-~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACE-LN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHH-TT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHc-CC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 355566666666552 33 2222 2 555555555666666666665222455556666666665 566666777
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 042503 424 AVKELINLEPWNSGNYVLLSNIYAE----GGRWDDAETLRMWMRENNV 467 (477)
Q Consensus 424 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 467 (477)
.|+++.+.+ ++.++..|+.+|.. .+++++|.+++++..+.|.
T Consensus 83 ~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 766666552 45666666766666 6667777777776666653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=98.14 E-value=4.4e-07 Score=80.56 Aligned_cols=260 Identities=11% Similarity=0.031 Sum_probs=153.1
Q ss_pred hhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhcc
Q 042503 34 NLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGV 113 (477)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 113 (477)
+.+|..+..+....+++.+|++.|-+. .|+..|..++.+..+.|.+++-+..+...++.. -++..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhh
Confidence 445666666666666665555544322 344445666666666666666666655444432 2333334555566666
Q ss_pred CCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcC
Q 042503 114 GDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMR 193 (477)
Q Consensus 114 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 193 (477)
++..+.++++ -.|+..-...+.+-|...|.++.|.-+|..+.. |..|..++.+.|++..|.+.-++.
T Consensus 130 ~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArKA- 196 (624)
T 3lvg_A 130 NRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA- 196 (624)
T ss_dssp CSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTTC-
T ss_pred CcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 6555443332 124444445555555666666666555554432 222223333444444443322221
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHH
Q 042503 194 ERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNA 273 (477)
Q Consensus 194 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 273 (477)
.++.||-.+-.+|...+++.-|.-.--.+.- .|| ....++..|...|.+++-+.+++...... ......++.
T Consensus 197 -ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE--rAHmGmFTE 268 (624)
T 3lvg_A 197 -NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTE 268 (624)
T ss_dssp -CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST--TCCHHHHHH
T ss_pred -CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC--chhHHHHHH
Confidence 4677899999999999998877654444332 122 23456777888999999999998887544 778888888
Q ss_pred HHHHHHhcCChHHHHHHhccCCC-----------CCceeHHHHHHHHHhcCCchHHH
Q 042503 274 LVDFYCKCGILDTARNVFKEIPR-----------KNVVSWNAMISGLAFNGRGELGV 319 (477)
Q Consensus 274 l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~ 319 (477)
|.-.|++- ++++-.+.++..-. .....|.-++-.|.+-.+++.|.
T Consensus 269 LaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 269 LAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 88888875 55666665554322 24567888888888777777664
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.7e-05 Score=57.25 Aligned_cols=67 Identities=16% Similarity=0.050 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
++...+..++..+...|++++|+..++++++..|.++..+..++.+|.+.|++++|+..+++.++..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3467788899999999999999999999999999999999999999999999999999999998764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00011 Score=69.82 Aligned_cols=151 Identities=11% Similarity=-0.018 Sum_probs=125.3
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcccc----------HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGL----------VEKARELFASMTGLHSIVPNLEHYGCMVDVLGR 382 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (477)
...++|+..++++...+ +-+...|+.-..++...|+ ++++++.++.+.+.. +-+..+|+.-.-++.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 34567899999999986 5567778777667766666 899999999998533 5677788877778888
Q ss_pred cC--CHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc--------
Q 042503 383 SG--CVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHG-HVELAEHAVKELINLEPWNSGNYVLLSNIYAEG-------- 449 (477)
Q Consensus 383 ~g--~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------- 449 (477)
.| +++++++.++++ .. +-+...|+.-..++.+.| .++++++.++++++.+|.+..+|...+.++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 88 779999999999 33 446788998888888889 899999999999999999999999999998874
Q ss_pred ------CCchHHHHHHHHHHhCC
Q 042503 450 ------GRWDDAETLRMWMRENN 466 (477)
Q Consensus 450 ------g~~~~A~~~~~~~~~~~ 466 (477)
+.++++++++++.+...
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHHHHHHHHhhC
Confidence 55789999999888754
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=7.8e-06 Score=62.07 Aligned_cols=88 Identities=15% Similarity=0.102 Sum_probs=58.6
Q ss_pred cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC----------HHHHHHHHHhc-CCCCC-HHHHHHHHHHHHH
Q 042503 347 AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC----------VREAYDLIRSM-SIRPN-AAIWGSLLSSCRT 414 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 414 (477)
.+.+++|...++...+.. +.+...|..+..++...++ +++|+..|++. .+.|+ ...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 345556666666555322 3445555555555555544 34777777777 44553 4677777777776
Q ss_pred c-----------CChHHHHHHHHHHHhcCCCCC
Q 042503 415 H-----------GHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 415 ~-----------~~~~~a~~~~~~~~~~~p~~~ 436 (477)
. |++++|+..|+++++++|++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 5 489999999999999999864
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00022 Score=53.69 Aligned_cols=112 Identities=7% Similarity=-0.102 Sum_probs=94.3
Q ss_pred CCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----cCCHHH
Q 042503 313 GRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR----SGCVRE 388 (477)
Q Consensus 313 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 388 (477)
+++++|+.+|++..+.| .|+.. +...|...+.+++|.+.|++..+ . -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46789999999999988 55544 77778888889999999999984 3 467788888888888 889999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 042503 389 AYDLIRSMSIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEP 433 (477)
Q Consensus 389 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 433 (477)
|.++|++.-..-++.....+...|.. .++.++|.+.++++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999334578888899999988 8999999999999988864
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.6e-05 Score=71.44 Aligned_cols=124 Identities=9% Similarity=-0.096 Sum_probs=90.8
Q ss_pred HHHhcCCchHHHHHHHHHHHcC---CCC----CHHHHHHHHHHhhccccHHHHHHHHHHhhhc----cC-CCCC-hHHHH
Q 042503 308 GLAFNGRGELGVELYEQMIAKG---VSP----NKATFVGVLTCCAHAGLVEKARELFASMTGL----HS-IVPN-LEHYG 374 (477)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~-~~~~~ 374 (477)
.+...|++++|+.++++..+.. +.| ...+++.|..+|...|++++|+.++++..+. .| ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3556788899988888876631 112 2457888889999999999998888876531 11 1222 45688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc---------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q 042503 375 CMVDVLGRSGCVREAYDLIRSM---------SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELINL 431 (477)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 431 (477)
.|...|...|++++|..++++. ...|+. .+...+..++...+.+++|+..|+++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877 223443 34566667788899999999999998753
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.92 E-value=6.3e-05 Score=54.65 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 402 AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
...+..++..+...|++++|+..++++++.+|.++..+..++.+|...|++++|...+++.++
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555555555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.90 E-value=4.5e-05 Score=52.52 Aligned_cols=65 Identities=23% Similarity=0.308 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 402 AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...+..+...+...|++++|+..++++++..|.++..+..++.++.+.|++++|...+++.++..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 46788889999999999999999999999999999999999999999999999999999998753
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.88 E-value=2e-05 Score=55.55 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=61.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhc-CCCC-CHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 042503 376 MVDVLGRSGCVREAYDLIRSM-SIRP-NAA-IWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 376 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (477)
....+.+.|++++|++.|++. ...| +.. .+..++.++...|++++|+..++++++.+|.++..+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677889999999999888 3344 456 88888999999999999999999999999988877633 445
Q ss_pred hHHHHHHHHHH
Q 042503 453 DDAETLRMWMR 463 (477)
Q Consensus 453 ~~A~~~~~~~~ 463 (477)
.++...+++..
T Consensus 78 ~~a~~~~~~~~ 88 (99)
T 2kc7_A 78 MDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHHHh
Confidence 55666654443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.0011 Score=57.90 Aligned_cols=138 Identities=12% Similarity=0.003 Sum_probs=88.6
Q ss_pred CCceeHHHHHHHHH--hcC---CchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc--------ccHHHHHHHHHHhhhc
Q 042503 297 KNVVSWNAMISGLA--FNG---RGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA--------GLVEKARELFASMTGL 363 (477)
Q Consensus 297 ~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~ 363 (477)
.+...|...+.+.. ..+ +..+|..+|++.++.. |-....+..+..++... .........++.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 46667777766543 222 3467888888888874 43455555444444310 1111111222222211
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 364 HSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
...+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.+++++.++|..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 223566777777777777778888888888888 445787777777888888888888888888888888864
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00014 Score=66.31 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHhc---------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCc---hHHHHHH
Q 042503 383 SGCVREAYDLIRSM---------SIRPNA-AIWGSLLSSCRTHGHVELAEHAVKELIN-----LEPWNSG---NYVLLSN 444 (477)
Q Consensus 383 ~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~ 444 (477)
.|++++|+.++++. ...|+. .+++.++.+|...|++++|+.+++++++ .+|++|. .++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45667776666655 112333 4677777778888888888888877764 3455444 4777777
Q ss_pred HHHhcCCchHHHHHHHHHHh
Q 042503 445 IYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 445 ~~~~~g~~~~A~~~~~~~~~ 464 (477)
+|...|++++|..++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 78888888888888777654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00016 Score=50.91 Aligned_cols=67 Identities=9% Similarity=-0.008 Sum_probs=46.9
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 367 VPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
+.+...+..+..+|.+.|++++|++.|++. ...| +...|..+..+|...|++++|++.+++++++.|
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 345566777777777777777777777776 3333 346777777777788888888888887776654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00014 Score=51.08 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=55.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 407 SLLSSCRTHGHVELAEHAVKELINLEPWNSG-NYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 407 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..+..+...|++++|+..++++++.+|.++. .+..++.+|...|++++|.+.+++.++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3566788999999999999999999999999 99999999999999999999999998764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00031 Score=64.07 Aligned_cols=94 Identities=13% Similarity=-0.053 Sum_probs=72.6
Q ss_pred ccccHHHHHHHHHHhhhc--cCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc---------CCCCCH-HHHHHHH
Q 042503 346 HAGLVEKARELFASMTGL--HSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM---------SIRPNA-AIWGSLL 409 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~--~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 409 (477)
..|++++|+.++++..+. .-+.|+ ..+++.|..+|...|++++|..++++. ...|+. .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999888876542 112222 357889999999999999999998887 335554 5789999
Q ss_pred HHHHHcCChHHHHHHHHHHHh-----cCCCCCchH
Q 042503 410 SSCRTHGHVELAEHAVKELIN-----LEPWNSGNY 439 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~ 439 (477)
..|...|++++|+.+++++++ ++|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999999975 467766543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00038 Score=58.24 Aligned_cols=88 Identities=14% Similarity=0.161 Sum_probs=72.0
Q ss_pred HHHHHHHHHhc-CCCCC---HHHHHHHHHHHHH-----cCChHHHHHHHHHHHhcCCCC-CchHHHHHHHHHhc-CCchH
Q 042503 386 VREAYDLIRSM-SIRPN---AAIWGSLLSSCRT-----HGHVELAEHAVKELINLEPWN-SGNYVLLSNIYAEG-GRWDD 454 (477)
Q Consensus 386 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 454 (477)
...|...+++. .+.|+ ...|..++..|.. -|+.++|.+.|+++++++|.. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45667777776 66777 4578888888887 489999999999999999974 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCCC
Q 042503 455 AETLRMWMRENNVKKSPGQ 473 (477)
Q Consensus 455 A~~~~~~~~~~~~~~~~~~ 473 (477)
|.+.+++.+......+|++
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 9999999998877765664
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.031 Score=53.25 Aligned_cols=113 Identities=8% Similarity=-0.038 Sum_probs=57.8
Q ss_pred CchHHHHHHHHHHHcCCCCCHHHH----HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHH
Q 042503 314 RGELGVELYEQMIAKGVSPNKATF----VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREA 389 (477)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 389 (477)
+.+.|...+....... ..+.... ..+.......+...++...+..... . .++.......+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-c--CCChHHHHHHHHHHHHCCCHHHH
Confidence 5677777777665443 2222222 2222233334423444445554331 1 23333333344444566777777
Q ss_pred HHHHHhcCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 042503 390 YDLIRSMSIRP--NAAIWGSLLSSCRTHGHVELAEHAVKELIN 430 (477)
Q Consensus 390 ~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 430 (477)
.+.|+.+...+ ......=+.+++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777773221 233333345566667777777777777754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00037 Score=63.65 Aligned_cols=85 Identities=8% Similarity=0.050 Sum_probs=47.2
Q ss_pred HHhcCCHHHHHHHHHhc------CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCc---hHHH
Q 042503 380 LGRSGCVREAYDLIRSM------SIRPN----AAIWGSLLSSCRTHGHVELAEHAVKELIN-----LEPWNSG---NYVL 441 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~ 441 (477)
+.+.|++++|+.++++. -..|+ ..+++.++.+|...|++++|+.+++++++ .+|.+|. .++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44555666666665554 01111 13556666666666666666666666653 2343333 4556
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 042503 442 LSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 442 l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
|+.+|...|++++|..++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666666666666666665543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0012 Score=60.20 Aligned_cols=101 Identities=12% Similarity=-0.029 Sum_probs=78.0
Q ss_pred HHHhhccccHHHHHHHHHHhhhcc--CCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc---------CCCCCH-HH
Q 042503 341 LTCCAHAGLVEKARELFASMTGLH--SIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM---------SIRPNA-AI 404 (477)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 404 (477)
+..+.+.|++++|+.++++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++. ...|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667789999999999886422 12232 357889999999999999999998877 334544 57
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCCCchHHH
Q 042503 405 WGSLLSSCRTHGHVELAEHAVKELIN-----LEPWNSGNYVL 441 (477)
Q Consensus 405 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 441 (477)
++.|...|...|++++|+.+++++++ ++|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 89999999999999999999999975 46877665443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00044 Score=51.86 Aligned_cols=93 Identities=17% Similarity=0.008 Sum_probs=68.1
Q ss_pred ccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcC---CHHHHHHHHHhc-CCC-C--CHHHHHHHHHHHHHcCCh
Q 042503 346 HAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSG---CVREAYDLIRSM-SIR-P--NAAIWGSLLSSCRTHGHV 418 (477)
Q Consensus 346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~ 418 (477)
.......+.+-|.+..+ .+ +++..+...+..++++.+ ++++++.+|++. ... | +...+..+.-++.+.|++
T Consensus 10 ~~~~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y 87 (152)
T 1pc2_A 10 SVEDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 87 (152)
T ss_dssp CHHHHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence 34556677777777663 33 367777777888888887 666888888887 323 5 345677777888899999
Q ss_pred HHHHHHHHHHHhcCCCCCchHH
Q 042503 419 ELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
++|.+.++.+++.+|++..+..
T Consensus 88 ~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999997655433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0014 Score=46.27 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-----C----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-----S----IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (477)
+..-+-.|...+.+.|++..|...|+.. . ..+....+..+..++.+.|+++.|...++++++..|.++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4445556777777778888887777766 1 123457888999999999999999999999999999987765
Q ss_pred HHHH
Q 042503 440 VLLS 443 (477)
Q Consensus 440 ~~l~ 443 (477)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 5544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.024 Score=40.89 Aligned_cols=141 Identities=11% Similarity=0.082 Sum_probs=103.7
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHH
Q 042503 309 LAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVRE 388 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 388 (477)
+.-.|..++..++..+..... +..-+|+++--....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 344678888888888877643 5566777776666666677777777776532222 23455555
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 042503 389 AYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVK 468 (477)
Q Consensus 389 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (477)
...-+-.++ .+...++..+.....+|.-++-.+++..++...+.+|....-++.+|.+.|+..+|.+++.+.-+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555543 345667778888899999999999999987777778999999999999999999999999999999875
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0065 Score=41.68 Aligned_cols=69 Identities=13% Similarity=0.003 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHHHhcCC---HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 367 VPNLEHYGCMVDVLGRSGC---VREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
+++...+..+..++...++ .++|..++++. ...| ++.....++..+.+.|++++|+..|+++++.+|.+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5667777777777765444 68999999888 4444 45778888889999999999999999999999873
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0057 Score=53.54 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHhhc-----cccHHHHHHHHHHhhhccCCCCC-hHHHHHHHHHHHh---cC-----CH---HHHHHH
Q 042503 330 VSPNKATFVGVLTCCAH-----AGLVEKARELFASMTGLHSIVPN-LEHYGCMVDVLGR---SG-----CV---REAYDL 392 (477)
Q Consensus 330 ~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-----~~---~~A~~~ 392 (477)
.+.+...|...+++... ..+..+|..+|+++.+. .|+ ...|..+..+|.. .+ .. ..+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 36677777777765432 34568999999999853 344 4455544444431 11 11 122222
Q ss_pred HHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 393 IRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 393 ~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...+ ..+.++.++..+...+...|++++|...+++++.++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2222 3356778888888888888999999999999999997 46778899999999999999999999988764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0023 Score=47.98 Aligned_cols=65 Identities=6% Similarity=-0.135 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 400 PNAAIWGSLLSSCRTHG---HVELAEHAVKELINLE-P-WNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
++..+...+..++++.+ +.++++.++++.++.+ | .+.+.+..++-+|.+.|++++|.++++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44555555555555544 3445555555555544 3 2344555555555555555555555555544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00035 Score=62.50 Aligned_cols=335 Identities=10% Similarity=0.103 Sum_probs=177.6
Q ss_pred HHHHHHHhhcCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCC
Q 042503 2 ERKILRLLHGRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPS 81 (477)
Q Consensus 2 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (477)
|..++.++.+.|.+++..+.+.-..+. ..++.+=+.++-+|++.++..+-.+++.. ||..-...+.+-|...|.+
T Consensus 86 y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~~---~N~A~iq~VGDrcf~e~lY 160 (624)
T 3lvg_A 86 YMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMY 160 (624)
T ss_dssp SSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTSC---CSSSCTHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHcC---CCcccHHHHHHHHHHccCH
Confidence 345666777777777666655544444 24455556677777777665544333222 4554455555555555555
Q ss_pred chHHHHHHHHHhCC--------------------CCCCcccHHHHHHHhhccCCchhH----------------------
Q 042503 82 EEPVKLFALLKNLG--------------------IWPDEYTFAPLLKACLGVGDLRVG---------------------- 119 (477)
Q Consensus 82 ~~a~~~~~~~~~~~--------------------~~p~~~~~~~l~~~~~~~~~~~~a---------------------- 119 (477)
+.|.-+|..+.... -.-++.||..+-.+|...+++.-|
T Consensus 161 eAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE 240 (624)
T 3lvg_A 161 DAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQ 240 (624)
T ss_dssp TTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSS
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHH
Confidence 55554444332111 022445666665666555554444
Q ss_pred --------HHHHHHHHHhccc-CcchHHHHHHHHHHhcCChhhHHHHhcccCC-----------CchHHhHHHHHHHHhc
Q 042503 120 --------QCVHGEIIRSGFE-RFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-----------RDVIVRNLMIHGFCKK 179 (477)
Q Consensus 120 --------~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~ 179 (477)
+.+++.-+ |.+ .....|+-|.-.|++- ++++.++.++..-. .....|..++-.|..-
T Consensus 241 ~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~y 317 (624)
T 3lvg_A 241 DRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 317 (624)
T ss_dssp TTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 44443332 222 2345566666666554 45666666554433 2445678888888888
Q ss_pred CChHHHHHHHH-------------hcCC--CChhhHHH---------------HHHHHHhcCChhHHHHHHHHHHHcC--
Q 042503 180 GDVDKGLYLFR-------------EMRE--RSVVSWNL---------------MISSLGKSGRDSEALRLFHEMRDQA-- 227 (477)
Q Consensus 180 ~~~~~a~~~~~-------------~~~~--~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~m~~~~-- 227 (477)
.+++.|....- ++.. .|+..|-. |+.++...=+..++.++|++.-...
T Consensus 318 dE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLI 397 (624)
T 3lvg_A 318 EEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLV 397 (624)
T ss_dssp TCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGG
T ss_pred hhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhh
Confidence 88887654321 1111 34444444 4444434445555555554421110
Q ss_pred ------C-CCCHHHHH-HHHHHhhccCcccc------------hHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHH
Q 042503 228 ------F-ELDEATVV-AVLPICARLGAVDI------------GQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTA 287 (477)
Q Consensus 228 ------~-~~~~~~~~-~l~~~~~~~~~~~~------------a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 287 (477)
+ .-|....+ ++-..+....|++. ...+-.++.++. -......-...|.+++++.++
T Consensus 398 kpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHe----L~eFRrIAA~LYkkn~rw~qs 473 (624)
T 3lvg_A 398 KPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHE----LIEFRRIAAYLFKGNNRWKQS 473 (624)
T ss_dssp TGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCS----SHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCc----hHHHHHHHHHHHHhcccHHHH
Confidence 0 11222222 22223333333221 122333333322 223334445667778888888
Q ss_pred HHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHH
Q 042503 288 RNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (477)
+.+.++= ..|.-.|...+..|+.+-+.++++-..+.| +...|...+-.|...=+++-++++
T Consensus 474 i~l~KkD-----klykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 474 VELCKKD-----SLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp SSCSSTT-----CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHhc-----ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 7665431 223334455567888888999999888877 556677888888877777777665
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.024 Score=56.92 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=54.1
Q ss_pred HHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHH
Q 042503 278 YCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
....|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 44566677776666555 3445677777777777777777777776532 223333344455555544444
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 358 ASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
+.... .| -++.-..+|.+.|++++|++++.++
T Consensus 731 ~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33331 11 1222333455556666666555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0059 Score=43.03 Aligned_cols=66 Identities=17% Similarity=-0.073 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 400 PNAAIWGSLLSSCRTHGHVELAEHAVKELINLE-------PWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.+..-...++..+...|+++.|...++.+++.. +..+.++..|+.+|.+.|++++|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345566788999999999999999999998753 334668999999999999999999999999864
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.016 Score=42.82 Aligned_cols=111 Identities=10% Similarity=0.056 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHhhccccH------HHHHHHHHHhhhccCCCCChHH-HHHHHH------HHHhcCCHHHHHHHHHhc-
Q 042503 331 SPNKATFVGVLTCCAHAGLV------EKARELFASMTGLHSIVPNLEH-YGCMVD------VLGRSGCVREAYDLIRSM- 396 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~~-~~~l~~------~~~~~g~~~~A~~~~~~~- 396 (477)
+.|..+|-..+....+.|++ ++..++|++... .++|+... |...+. .+...++.++|.++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44677777777777777887 788888887773 45665321 111111 123446778888888777
Q ss_pred C--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 397 S--IRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 397 ~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
. .+- ...|......-.++|+...|.+++.+++.+.|.+...+...+.
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 1 111 5566666666677888888888888888887765554444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0075 Score=43.43 Aligned_cols=99 Identities=16% Similarity=-0.003 Sum_probs=66.9
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHH---HHHHHHhc-CCC-C--CHHHHHHHHHHH
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVRE---AYDLIRSM-SIR-P--NAAIWGSLLSSC 412 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~ 412 (477)
++..-........+.+-|.+... .+ .++..+--.+..++++..+... ++.++++. ... | .......+.-++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~-~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 33444445556666777766653 33 3677776677778888776665 78888887 322 4 224556677788
Q ss_pred HHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 413 RTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
.+.|++++|.+.++.+++..|.+..+..
T Consensus 85 yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 8888999998888888888888765443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.025 Score=56.82 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHH
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVE 351 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (477)
..++..+.+.|.++.|..+.+.. ..-.......|++++|.++.+. -.+...|..+...+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHH
Confidence 56667777777777777665421 1112334566777777776543 235667888888888888888
Q ss_pred HHHHHHHHhh
Q 042503 352 KARELFASMT 361 (477)
Q Consensus 352 ~a~~~~~~~~ 361 (477)
.|++.|.++.
T Consensus 699 ~A~~~y~~~~ 708 (814)
T 3mkq_A 699 LAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHcc
Confidence 8888887765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.057 Score=38.88 Aligned_cols=65 Identities=6% Similarity=-0.173 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 400 PNAAIWGSLLSSCRTHGHVEL---AEHAVKELINLE-P-WNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 400 p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
|+..+-..+.+++.++++... ++.+++...+.+ | ........|+-++.+.|++++|.++++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555555555555544333 555555555444 3 2344455555555555555555555555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.17 Score=36.64 Aligned_cols=138 Identities=16% Similarity=0.010 Sum_probs=80.7
Q ss_pred hccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC-CchHHhHHHHHHHHhcCChHHHHHHH
Q 042503 111 LGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH-RDVIVRNLMIHGFCKKGDVDKGLYLF 189 (477)
Q Consensus 111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~ 189 (477)
.-.|..++..++..+...+. +..-||-++--....-+-+-..++++.+.+ -|.. ..|++......+
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis----------~C~NlKrVi~C~ 84 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD----------KCQNLKSVVECG 84 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG----------GCSCTHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcH----------hhhcHHHHHHHH
Confidence 33455566666655555432 223333333333333444444444444433 1211 122333333333
Q ss_pred HhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCC
Q 042503 190 REMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGL 263 (477)
Q Consensus 190 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 263 (477)
-.+. .+....+.-+..+..+|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++.+.|.
T Consensus 85 ~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 85 VINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 2222 23344566677888889988888888886543 477888888888999999999999999999888886
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0066 Score=50.90 Aligned_cols=83 Identities=10% Similarity=0.097 Sum_probs=56.2
Q ss_pred cHHHHHHHHHHhhhccCCCCC---hHHHHHHHHHHHh-----cCCHHHHHHHHHhc-CCCCC--HHHHHHHHHHHHHc-C
Q 042503 349 LVEKARELFASMTGLHSIVPN---LEHYGCMVDVLGR-----SGCVREAYDLIRSM-SIRPN--AAIWGSLLSSCRTH-G 416 (477)
Q Consensus 349 ~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~-~ 416 (477)
....|...+++..+. .|+ ...|..|...|.+ -|+.++|.+.|++. .+.|+ ..++......++.. |
T Consensus 178 ~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 345666666666642 344 4467777777776 37888888888777 55552 56666677777664 7
Q ss_pred ChHHHHHHHHHHHhcCCC
Q 042503 417 HVELAEHAVKELINLEPW 434 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~ 434 (477)
+.+.+.+.+++++...|.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 888888888888877765
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.056 Score=52.51 Aligned_cols=58 Identities=14% Similarity=-0.023 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 406 GSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMR 463 (477)
Q Consensus 406 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 463 (477)
+.-...|...|+++.|+.+.++++...|.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3335567789999999999999999999999999999999999999999999998773
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.15 Score=39.33 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=62.7
Q ss_pred HHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhH
Q 042503 40 FVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVG 119 (477)
Q Consensus 40 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 119 (477)
-++.....|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|....+ +..+.-.|...|+.+..
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 345566778888888877655 4566788888888888888888888877664 34444445556666554
Q ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhccc
Q 042503 120 QCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEM 161 (477)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (477)
.++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 44443333322 1223333344455555555555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.071 Score=39.45 Aligned_cols=97 Identities=15% Similarity=0.100 Sum_probs=55.5
Q ss_pred CCceeHHHHHHHHHhcCCc------hHHHHHHHHHHHcCCCCCHHH-HHHHHH------HhhccccHHHHHHHHHHhhhc
Q 042503 297 KNVVSWNAMISGLAFNGRG------ELGVELYEQMIAKGVSPNKAT-FVGVLT------CCAHAGLVEKARELFASMTGL 363 (477)
Q Consensus 297 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~~-~~~l~~------~~~~~~~~~~a~~~~~~~~~~ 363 (477)
.|..+|-..+...-+.|++ ++..++|++.... ++|+... +...+. .+...++.++|.++|+.+.+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666666666666777 6666777766664 4554211 001000 112336677777777777532
Q ss_pred cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 364 HSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 364 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
.-.- ...|-.....-.++|++.+|.+++.+.
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2122 555666666666777777777777766
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.49 Score=36.43 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=22.4
Q ss_pred HHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHH
Q 042503 278 YCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQ 324 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 324 (477)
....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34455555555554443 2344455555555555555555555544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.12 Score=37.91 Aligned_cols=71 Identities=17% Similarity=0.094 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHHHhcCCH---HHHHHHHHhc-CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 042503 367 VPNLEHYGCMVDVLGRSGCV---REAYDLIRSM-SIRP--NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG 437 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (477)
.|+..+--.+..++.+..+. .+++.++++. ...| .......+.-++.+.|++++|.+..+.+++.+|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 45555554555555555433 3455556555 2223 2234444555666666666666666666666666543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.65 E-value=2 Score=42.84 Aligned_cols=253 Identities=11% Similarity=-0.034 Sum_probs=131.6
Q ss_pred HHHhcCChHHHHHHHHhcCC----CChh--hHHHHHHHHHhcCChhHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 042503 175 GFCKKGDVDKGLYLFREMRE----RSVV--SWNLMISSLGKSGRDSEALRLFHEMRDQAF-------ELDEATVVAVLPI 241 (477)
Q Consensus 175 ~~~~~~~~~~a~~~~~~~~~----~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~~~~~~l~~~ 241 (477)
+....|+.++++..+..... .+.. .=..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34557788888888887664 1222 223344455666666677777777654321 0111112222222
Q ss_pred hhccCcc-cchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC-CCceeH--HHHHHHHHhcCCchH
Q 042503 242 CARLGAV-DIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR-KNVVSW--NAMISGLAFNGRGEL 317 (477)
Q Consensus 242 ~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~--~~l~~~~~~~~~~~~ 317 (477)
.+-.|.- +.+...+..+..............++...+.-.|+-+....++..+.+ .+.... -.+.-++...|+.+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 3333322 244455555554331011112223445556677777766666665432 122222 223334557788888
Q ss_pred HHHHHHHHHHcCCCCCHHHH--HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 042503 318 GVELYEQMIAKGVSPNKATF--VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRS 395 (477)
Q Consensus 318 a~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 395 (477)
+..+++.+.... .|....- ..+.-+|+..|+.....+++..+.+. ...++.....+.-++...|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 888888887642 3322222 23445677888988887788888742 122333333444455556777767777766
Q ss_pred c--CCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHh
Q 042503 396 M--SIRPNAAIWGSLLSSCRTHGHV-ELAEHAVKELIN 430 (477)
Q Consensus 396 ~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 430 (477)
+ ...|....-..+.-+....|+. .++...+..+..
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 5 2233333333333334444443 567777777753
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.61 E-value=2.1 Score=42.73 Aligned_cols=265 Identities=9% Similarity=0.048 Sum_probs=147.7
Q ss_pred HHHhcCChhhHHHHhcccCC----Cch--HHhHHHHHHHHhcCChHHHHHHHHhcCC-CC----------hhhHHHHHHH
Q 042503 144 LYTSCGQMDDGMKVFDEMSH----RDV--IVRNLMIHGFCKKGDVDKGLYLFREMRE-RS----------VVSWNLMISS 206 (477)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~----~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----------~~~~~~l~~~ 206 (477)
+....|+.++++.+++.... .+. ..-..+.-+....|..+++..++..... ++ +..-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45677899999999988764 222 2223444555666766677776666443 22 1122333334
Q ss_pred HHhcCC-hhHHHHHHHHHHHcCCCCCHHHHH--HHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCC
Q 042503 207 LGKSGR-DSEALRLFHEMRDQAFELDEATVV--AVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGI 283 (477)
Q Consensus 207 ~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 283 (477)
++-.|. -+++...+..+.... .+...... .+...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCC
Confidence 443443 245666666665432 11111122 22233456677777788888777543 3343333445555557788
Q ss_pred hHHHHHHhccCCC-CCce-eHH---HHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHH
Q 042503 284 LDTARNVFKEIPR-KNVV-SWN---AMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFA 358 (477)
Q Consensus 284 ~~~a~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (477)
.+.+..+++.+.. .++. -|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888777776653 3332 233 23446677888877777888887642 2233333333334444566666777777
Q ss_pred HhhhccCCCCChHHHHHHHHHHHhcCCH-HHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 042503 359 SMTGLHSIVPNLEHYGCMVDVLGRSGCV-REAYDLIRSMSIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 414 (477)
.+.+ .+ .|.+..-..+..+....|.. .+++..+..+...+|..+-...+.++..
T Consensus 619 ~L~~-~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 619 LLSK-SH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSM 673 (963)
T ss_dssp TGGG-CS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHh-cC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 6663 22 34444444444455555544 6788888888556666655444444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.071 Score=38.55 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCC
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWNS 436 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 436 (477)
.+--+.-++.+.|++++|.+..+.+++..|.+.
T Consensus 80 ~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 80 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 344444455555555555555555555555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.042 Score=49.37 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh-----CCCccCCC
Q 042503 405 WGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE-----NNVKKSPG 472 (477)
Q Consensus 405 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 472 (477)
...++..+...|+++++...++.++..+|.+...+..++.+|.+.|+..+|++.|+++.+ .|+.|+|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 445667778889999999999999999999888999999999999999999988887643 47777654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.17 Score=38.30 Aligned_cols=26 Identities=15% Similarity=-0.055 Sum_probs=22.6
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 437 GNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 437 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
+.-..++.+|.+.|++++|+.+++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 56678999999999999999998765
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=3.2 Score=39.66 Aligned_cols=376 Identities=12% Similarity=-0.011 Sum_probs=184.7
Q ss_pred HhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCch
Q 042503 38 AHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLR 117 (477)
Q Consensus 38 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 117 (477)
+..+..+.+.+++...+..+.. ...+...--....+....|+..+|....+.+-..| ...+.....++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 3344445555556655555544 22222222234444555555555555555554443 223334444444444333322
Q ss_pred hHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCCh
Q 042503 118 VGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSV 197 (477)
Q Consensus 118 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 197 (477)
. .. .-.-+......|+...|..+...+..........++..+. +...+....... .++.
T Consensus 154 ~----------------~~-~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~ 212 (618)
T 1qsa_A 154 P----------------LA-YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFARTT-GATD 212 (618)
T ss_dssp H----------------HH-HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCH
T ss_pred H----------------HH-HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCCh
Confidence 1 11 1122234455667777777766663222222223332222 223333333322 2222
Q ss_pred h---hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH----HHHHHhhccCcccchHHHHHHHHHhCCccchhHH
Q 042503 198 V---SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVV----AVLPICARLGAVDIGQWIHSYAESSGLYRKVVSV 270 (477)
Q Consensus 198 ~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 270 (477)
. .+..-+.-+.+ .+.+.|...+....... ..+..... .+.......+....+...+....... .+...
T Consensus 213 ~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 287 (618)
T 1qsa_A 213 FTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS---QSTSL 287 (618)
T ss_dssp HHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC---CCHHH
T ss_pred hhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC---CChHH
Confidence 2 11112222333 47899999998886543 23333322 23333344453445555555544433 22223
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCCCCc---eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Q 042503 271 GNALVDFYCKCGILDTARNVFKEIPRKNV---VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHA 347 (477)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 347 (477)
..-.+....+.|+++.|...|+.+..... ...-=+..++...|+.++|..+|..+... .+ .|..+.. .+.
T Consensus 288 ~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lAa--~~L 360 (618)
T 1qsa_A 288 IERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRI 360 (618)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHHH--HHc
Confidence 34455556678999999999999976322 11223455677889999999999998742 22 2333322 122
Q ss_pred ccHHHHHHHHHHhhhccCCCCC-hH-----HHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHH
Q 042503 348 GLVEKARELFASMTGLHSIVPN-LE-----HYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 348 ~~~~~a~~~~~~~~~~~~~~~~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 421 (477)
|..-. +. .....+. .. .-..-+..+...|....|...+.......+......+.......|..+.+
T Consensus 361 g~~~~-------~~-~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~ 432 (618)
T 1qsa_A 361 GEEYE-------LK-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLS 432 (618)
T ss_dssp TCCCC-------CC-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCC-------CC-CCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHH
Confidence 21000 00 0000110 00 11123455778899999988888772234444445566666778888887
Q ss_pred HHHHHHHHhcCC---CCCchHHHHHHHHHhcCCchHHH
Q 042503 422 EHAVKELINLEP---WNSGNYVLLSNIYAEGGRWDDAE 456 (477)
Q Consensus 422 ~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~ 456 (477)
+....+....+. .-|..|..++.-+.+.-.++.++
T Consensus 433 v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 433 VQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp HHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHhhcchhhhCCcchHHHHHHHHHHcCCCHHH
Confidence 766554332220 11335666666666655555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.33 E-value=3.1 Score=38.05 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCC---------CchHHhHHHHHHHHhcCChHHHHHHHHhcCC------CC----hhh
Q 042503 139 IGVVELYTSCGQMDDGMKVFDEMSH---------RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE------RS----VVS 199 (477)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~----~~~ 199 (477)
..|...|...|++.+|..++..+.. .-...+...++.|...+++.+|..++.++.. ++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 3456666777777777776666532 1123455566777778888888777776532 11 124
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHH----HHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHH
Q 042503 200 WNLMISSLGKSGRDSEALRLFHEMRDQ-AFELDEATVV----AVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNAL 274 (477)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 274 (477)
+...+..+...++|.+|.+.|.+.... ....|...+. .++.+..-.+....-..+......... -+....+..+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~-~~~l~~~~~L 299 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNN-LKKLESQESL 299 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccc-ccccHHHHHH
Confidence 566777778888888888887776542 1112332222 122222222222333334444333332 4566677888
Q ss_pred HHHHHhc--CChHHHHHHhccCCCCCc
Q 042503 275 VDFYCKC--GILDTARNVFKEIPRKNV 299 (477)
Q Consensus 275 ~~~~~~~--~~~~~a~~~~~~~~~~~~ 299 (477)
+.+|... .+++.....|.....++.
T Consensus 300 ~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 300 VKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred HHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 8888765 467888888887766544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.46 E-value=0.96 Score=33.21 Aligned_cols=69 Identities=7% Similarity=-0.097 Sum_probs=49.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 397 SIRPNAAIWGSLLSSCRTHGH---VELAEHAVKELINLEPW-NSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 397 ~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+..|+..+-..+.+++.++.+ ..+++.+++.+.+..|. ..+....|+-++.+.|++++|.++.+.+++.
T Consensus 34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 335677777777777777664 44677778877777763 4556777778888888888888888877765
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.24 E-value=3 Score=37.17 Aligned_cols=157 Identities=13% Similarity=0.032 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCChHHHHHHhccCCC--------CCceeHHHHHHHHHhc-CCchHHHHHHHHHHHcCCCCCHHHH-----
Q 042503 272 NALVDFYCKCGILDTARNVFKEIPR--------KNVVSWNAMISGLAFN-GRGELGVELYEQMIAKGVSPNKATF----- 337 (477)
Q Consensus 272 ~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~----- 337 (477)
..|...|.+.|+.++...++..... ........++..+... +..+.-.++..+..+-. ..+..+|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l 101 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 5566667777777776666665543 1122344455555443 22333333333333210 0011112
Q ss_pred -HHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCCCHHHHHH
Q 042503 338 -VGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEHYGCMVDVLGRSGCVREAYDLIRSM-----SIRPNAAIWGS 407 (477)
Q Consensus 338 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~ 407 (477)
..++..|...|++.+|..++..+.+...-..+ ..++..-+..|...+++.++...+... .+.|++.....
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 24566667777777777777666532211111 223444556666777777777666655 22233332211
Q ss_pred ----HHHHHH-HcCChHHHHHHHHHHH
Q 042503 408 ----LLSSCR-THGHVELAEHAVKELI 429 (477)
Q Consensus 408 ----l~~~~~-~~~~~~~a~~~~~~~~ 429 (477)
-+..+. ..+++..|...|-++.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 122344 5677777766665554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.14 E-value=3 Score=38.07 Aligned_cols=183 Identities=10% Similarity=0.046 Sum_probs=115.7
Q ss_pred cCChHHHHHHhccCCC-----C----CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhh----cc
Q 042503 281 CGILDTARNVFKEIPR-----K----NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCA----HA 347 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~----~~ 347 (477)
.|+++.|++.+..+.+ . .......++..|...|+++...+.+.-+....-.. ......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 3678888877654432 2 23456678888999999999988887776543222 222233333322 22
Q ss_pred c--cHHHHHHHHHHhhhc--cCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHHhc-----CCCCC---HHHHHHHHHHH
Q 042503 348 G--LVEKARELFASMTGL--HSIVP---NLEHYGCMVDVLGRSGCVREAYDLIRSM-----SIRPN---AAIWGSLLSSC 412 (477)
Q Consensus 348 ~--~~~~a~~~~~~~~~~--~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~ 412 (477)
. +.+.-..+.+.+... ..+-. .......|...|...|++.+|.+++.++ +..+. ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2 222222233222210 11111 1233456888999999999999999988 22222 24666777889
Q ss_pred HHcCChHHHHHHHHHHHh---cCCCCC----chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 413 RTHGHVELAEHAVKELIN---LEPWNS----GNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 413 ~~~~~~~~a~~~~~~~~~---~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
...+|+.+|..+++++.. ..+.++ ..+...+..+...+++.+|-+.|.++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999999999999753 223333 3567888888899999999988887754
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=93.04 E-value=4 Score=35.21 Aligned_cols=169 Identities=12% Similarity=0.067 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHH----HHHHHcCCCCCHHHHHHHHHHh
Q 042503 269 SVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELY----EQMIAKGVSPNKATFVGVLTCC 344 (477)
Q Consensus 269 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~l~~~~ 344 (477)
..+.++..-|.+.+++++|++++-. -...+.+.|+...+.++. +-..+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4456777788888999998887543 233455667666555544 5555578888888888887776
Q ss_pred hcccc--HHHHHHHHHHhhh---ccC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCC
Q 042503 345 AHAGL--VEKARELFASMTG---LHS--IVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGH 417 (477)
Q Consensus 345 ~~~~~--~~~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 417 (477)
..... .+. ..+.+++.+ +.| ..-++.....+...|.+.+++.+|...|- .+.++.+..+..++.-+...+.
T Consensus 105 ~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 105 RLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC
T ss_pred HhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC
Confidence 65442 111 122222211 112 23456777888999999999999999884 3545555777777666665554
Q ss_pred hHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 418 VELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 418 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
..++--+ ....+--|.-.|+...|..+++...+
T Consensus 183 ~~e~dlf--------------iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 SHTAPLY--------------CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGGHHHH--------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CccHHHH--------------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3222222 22334446777888888887766654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.62 Score=33.71 Aligned_cols=69 Identities=7% Similarity=-0.097 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCC-CCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 397 SIRPNAAIWGSLLSSCRTHGH---VELAEHAVKELINLEPW-NSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 397 ~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
+-.|+..+-..+.+++.++.+ ..+++.+++.+.+.+|. ..+.+..|+-++.+.|++++|.++.+.+++.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 335666666666677766654 34567777777766663 3556777777777777777777777777654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=92.28 E-value=4.9 Score=34.37 Aligned_cols=168 Identities=8% Similarity=-0.080 Sum_probs=100.8
Q ss_pred hHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHH----HHHHHhCCCCCCcccHHHHHHHh
Q 042503 35 LILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKL----FALLKNLGIWPDEYTFAPLLKAC 110 (477)
Q Consensus 35 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~~~~l~~~~ 110 (477)
..+..+..-|.+++++++|++++.. -...+.+.|+...|.++ .+-+.+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3666777778888999999887653 23345566777666654 44455567788887777777776
Q ss_pred hccCCch-hHHHHHHHHHH----hcc--cCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhc---C
Q 042503 111 LGVGDLR-VGQCVHGEIIR----SGF--ERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKK---G 180 (477)
Q Consensus 111 ~~~~~~~-~a~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~ 180 (477)
.....-+ .-.++++.+++ .|. .-++.....+...|.+.|++.+|...|-.-...+...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5533222 22344444443 222 235677888888889999999988877643333555565555544443 3
Q ss_pred ChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 042503 181 DVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMR 224 (477)
Q Consensus 181 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 224 (477)
...++- .. ..-.+--|.-.|+...|..+++...
T Consensus 183 ~~~e~d----------lf-~~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVA----------EF-FSRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHH----------HH-HHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CcchHH----------HH-HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 332221 11 1112233445677777777777654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=91.19 E-value=4.6 Score=31.85 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhH
Q 042503 136 SIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSE 215 (477)
Q Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 215 (477)
.+....+.++.+.|+.+....+.+.+.+++..+-...+.++.+.++.+....+...+.+++...-...+.++...|. .+
T Consensus 91 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~ 169 (201)
T 3ltj_A 91 WVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ER 169 (201)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hh
Confidence 33334444444444433333333333344444444445555555544333333333334554444555555555554 33
Q ss_pred HHHHHHHHHH
Q 042503 216 ALRLFHEMRD 225 (477)
Q Consensus 216 a~~~~~~m~~ 225 (477)
+...+..+..
T Consensus 170 ~~~~L~~~l~ 179 (201)
T 3ltj_A 170 VRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.15 E-value=3.9 Score=30.96 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhCC-CCCCc-------ccHHHHHHHhhccCCchhHHHHHHHHHH
Q 042503 68 FNSMIKAYSLNGPSEEPVKLFALLKNLG-IWPDE-------YTFAPLLKACLGVGDLRVGQCVHGEIIR 128 (477)
Q Consensus 68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 128 (477)
+-.-++.+...+.++.|.-+...+.... ..|+. .++..+..++...|++..|...|++.++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3334455555666666665555544321 12221 1334445555556666666666665543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=91.06 E-value=4.9 Score=31.98 Aligned_cols=88 Identities=13% Similarity=0.152 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHH
Q 042503 137 IRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEA 216 (477)
Q Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 216 (477)
+....+.++.+.|+.+....+.+.+.+++..+-...+.++.+.|+.+....+.+.+.+++...-...+.++.+.+. ..+
T Consensus 97 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~ 175 (211)
T 3ltm_A 97 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERV 175 (211)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhH
Confidence 3333344444444433333333333334444444445555555544333333333334555444455555555554 334
Q ss_pred HHHHHHHHH
Q 042503 217 LRLFHEMRD 225 (477)
Q Consensus 217 ~~~~~~m~~ 225 (477)
...+..+.+
T Consensus 176 ~~~L~~~l~ 184 (211)
T 3ltm_A 176 RAAMEKLAE 184 (211)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=90.99 E-value=0.47 Score=39.20 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=23.8
Q ss_pred HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 414 THGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 414 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
+.|+.++++..+...++.+|.|......|+..||-.|+|+.|.+-++..
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4444444444444444444444444444444444445554444444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.93 E-value=7.2 Score=33.64 Aligned_cols=191 Identities=12% Similarity=0.012 Sum_probs=111.7
Q ss_pred CCchhHhHHHHHHHHhhcc----cchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHH
Q 042503 13 NTRTHLTQIHAHFLRHKLH----QSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLF 88 (477)
Q Consensus 13 ~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 88 (477)
+.+++..+=++.-++.|-. ---..+.++..-|.+++++++|++++-. -...+.+.|+...|.++-
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 3344444444444455522 1123667777888899999999987643 234556667776666555
Q ss_pred ----HHHHhCCCCCCcccHHHHHHHhhccCCch-hHHHHHHHHHH----hc--ccCcchHHHHHHHHHHhcCChhhHHHH
Q 042503 89 ----ALLKNLGIWPDEYTFAPLLKACLGVGDLR-VGQCVHGEIIR----SG--FERFGSIRIGVVELYTSCGQMDDGMKV 157 (477)
Q Consensus 89 ----~~~~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (477)
+-+.+.++++|......++..+.....-+ .-..+.+.+++ .| ..-++.....+...|.+.+++.+|...
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 44555678888888888887776555322 22334444433 33 233567777888889999999999888
Q ss_pred hcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042503 158 FDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRD 225 (477)
Q Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 225 (477)
|-.-.+++...+..++.-+...+...++ +... .-.+--|...++...|..+++...+
T Consensus 159 ~ilg~~~s~~~~a~mL~ew~~~~~~~e~----------dlfi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 159 LVLGTKESPEVLARMEYEWYKQDESHTA----------PLYC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTSCTTHHHHHHHHHHHHHHTSCGGGH----------HHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHhcCCccH----------HHHH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8543334445665555544444332111 1111 1223345556777777777666543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.80 E-value=15 Score=38.25 Aligned_cols=121 Identities=16% Similarity=0.064 Sum_probs=65.4
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCC---C-------------------
Q 042503 139 IGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRER---S------------------- 196 (477)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~------------------- 196 (477)
..++..+...|.++-+.++...+.. +......+..++...|++++|.+.|.+.... +
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence 3455666677777777776655544 3333355667788888888888888776420 0
Q ss_pred ----hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhhccCcccchHHHHHHHHH
Q 042503 197 ----VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDE----ATVVAVLPICARLGAVDIGQWIHSYAES 260 (477)
Q Consensus 197 ----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (477)
..-|..++..+.+.|.++.+.++-....+...+-+. ..|..+.+.+...|+++.|...+-.+..
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 012444455555555555555554444433211111 1244455555555555555555544433
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.61 E-value=2.8 Score=28.33 Aligned_cols=89 Identities=13% Similarity=0.005 Sum_probs=64.2
Q ss_pred cCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHH
Q 042503 11 GRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFAL 90 (477)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 90 (477)
-....++|.-|-+.+...+. ...+.-.-+..+...|++++|..+.+....||...|-+|-.. +.|-.+++..-+..
T Consensus 18 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 18 GQHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAG 93 (115)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 44566889999999988874 333333445667788999999999999999999999877654 66776777777767
Q ss_pred HHhCCCCCCcccHH
Q 042503 91 LKNLGIWPDEYTFA 104 (477)
Q Consensus 91 ~~~~~~~p~~~~~~ 104 (477)
+..+| .|....|.
T Consensus 94 la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 94 LGGSS-DPALADFA 106 (115)
T ss_dssp HHTCS-SHHHHHHH
T ss_pred HHhCC-CHHHHHHH
Confidence 77766 44443333
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.55 E-value=0.77 Score=44.74 Aligned_cols=121 Identities=8% Similarity=0.049 Sum_probs=68.1
Q ss_pred HHHHHHhcCC-CchHHHHHHHHHhCCCCCCcccHH--HHHHHhhccCC-chhHHHHHHHHHHh------cccCc------
Q 042503 71 MIKAYSLNGP-SEEPVKLFALLKNLGIWPDEYTFA--PLLKACLGVGD-LRVGQCVHGEIIRS------GFERF------ 134 (477)
Q Consensus 71 l~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~~------ 134 (477)
+++.+...++ .+.|.++|+++...+ |....+. .++..+...++ --+|.+++.+.++. ...+.
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 3333334455 467888888888753 4333322 22222222222 22345555444321 11111
Q ss_pred -----chHHHHHHHHHHhcCChhhHHHHhcccCC--C-chHHhHHHHHHHHhcCChHHHHHHHHhcC
Q 042503 135 -----GSIRIGVVELYTSCGQMDDGMKVFDEMSH--R-DVIVRNLMIHGFCKKGDVDKGLYLFREMR 193 (477)
Q Consensus 135 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 193 (477)
....+.=++.+...|+++-|+++-++... | +-.+|..|..+|...|+++.|+-.++.++
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222224556677888888888777665 4 45678888888888888888888887775
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.28 E-value=3 Score=28.21 Aligned_cols=88 Identities=13% Similarity=0.010 Sum_probs=62.4
Q ss_pred cCCCchhHhHHHHHHHHhhcccchhHHHhHHHHHhhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCCCchHHHHHHH
Q 042503 11 GRNTRTHLTQIHAHFLRHKLHQSNLILAHFVSVCGTLNEIKYATKIFNQMRNPSVLLFNSMIKAYSLNGPSEEPVKLFAL 90 (477)
Q Consensus 11 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 90 (477)
-....++|.-|-+.+...+. ...+.-.-+..+...|++++|..+.+....||...|-+|-.. +.|-.+++..-+..
T Consensus 19 G~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~ 94 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNR 94 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 44556888889999888874 333333445667788999999999999999999999877654 55666666666666
Q ss_pred HHhCCCCCCcccH
Q 042503 91 LKNLGIWPDEYTF 103 (477)
Q Consensus 91 ~~~~~~~p~~~~~ 103 (477)
+..+| .|....|
T Consensus 95 la~sg-~p~~q~F 106 (116)
T 2p58_C 95 LARSQ-DPRIQTF 106 (116)
T ss_dssp HTTCC-CHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 76665 3433333
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.00 E-value=2.3 Score=44.29 Aligned_cols=92 Identities=9% Similarity=-0.104 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc--CCCC-----------------------CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM--SIRP-----------------------NAAIWGSLLSSCRTHGHVELAEHAVKEL 428 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~--~~~p-----------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 428 (477)
-.+..+|...|++++|.+.|++. ++.. -..-|..++..+.+.|.++.+.++.+.+
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455666666666666666665 1110 1234566666777778888888877777
Q ss_pred HhcCCCCCc-----hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 429 INLEPWNSG-----NYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 429 ~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
++..+.+.. .|..+.+.+...|++++|...+-.+...
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~ 967 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT 967 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH
Confidence 765533222 4666777777888888887777665543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.87 E-value=1.5 Score=39.32 Aligned_cols=55 Identities=11% Similarity=-0.013 Sum_probs=27.7
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
++..+...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|++.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555555555555554221 334445555555555555555555555443
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=89.72 E-value=11 Score=33.66 Aligned_cols=123 Identities=13% Similarity=0.092 Sum_probs=71.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHhcccCC--------CchHHhHHHHHHHHhc-CChHHHHHHHHhcCC---CChhhH----
Q 042503 137 IRIGVVELYTSCGQMDDGMKVFDEMSH--------RDVIVRNLMIHGFCKK-GDVDKGLYLFREMRE---RSVVSW---- 200 (477)
Q Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~---~~~~~~---- 200 (477)
....|...|.+.|+.++..+++..... ........++..+... +..+.-.++..+..+ .+-.+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577778888888888888877665 2233445566655543 333333344333332 111222
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-----HHHHHHHHhhccCcccchHHHHHHHH
Q 042503 201 --NLMISSLGKSGRDSEALRLFHEMRDQAFELDEA-----TVVAVLPICARLGAVDIGQWIHSYAE 259 (477)
Q Consensus 201 --~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (477)
..++..|...|++.+|..++..+.+.--+.|.. .+..-+..|...+++.++...+..+.
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 257788899999999999888887652222221 23334455566666666666665554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.33 E-value=1.8 Score=29.43 Aligned_cols=60 Identities=10% Similarity=0.114 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
+..+-++.+....+.|++......+++|.+.+++..|.++|+.++.+.+.. ..+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 455666777777888999999999999999999999999999888544333 445666553
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=89.22 E-value=7.1 Score=31.01 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHH
Q 042503 139 IGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALR 218 (477)
Q Consensus 139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 218 (477)
...+.++.+.|+.+....+.+.+.+++..+-...+.++.+.++.+....+.+.+.+++...-...+.++...|..+ +..
T Consensus 68 ~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~ 146 (211)
T 3ltm_A 68 RAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVE 146 (211)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHH
Confidence 3333444444443333333333344555555555555555555444444444444455544444555555555433 223
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHhhccCc
Q 042503 219 LFHEMRDQAFELDEATVVAVLPICARLGA 247 (477)
Q Consensus 219 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 247 (477)
.+..+.. .++...-...+.++.+.+.
T Consensus 147 ~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 147 PLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 3333332 2344444444444444443
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.06 E-value=4.5 Score=31.78 Aligned_cols=47 Identities=9% Similarity=-0.006 Sum_probs=23.8
Q ss_pred HHHHHHHHHhc---CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 386 VREAYDLIRSM---SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 386 ~~~A~~~~~~~---~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
..++..+|..| ++ .--..-|......+...|++++|.++|+..++..
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 44555555544 22 2233445555555555566666666666555544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.59 E-value=11 Score=32.28 Aligned_cols=182 Identities=11% Similarity=-0.005 Sum_probs=109.5
Q ss_pred HHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHH----HHHHHHcCC
Q 042503 255 HSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVEL----YEQMIAKGV 330 (477)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~m~~~~~ 330 (477)
++.-.+.|..=.-...+.++..-|.+.+++++|++++.. -...+.+.|+...|.++ ++-..+.++
T Consensus 20 l~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~ 88 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEV 88 (312)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCC
Confidence 333333443233344557778888888999998887543 23345566776666554 445555688
Q ss_pred CCCHHHHHHHHHHhhcccc--------HHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCH
Q 042503 331 SPNKATFVGVLTCCAHAGL--------VEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNA 402 (477)
Q Consensus 331 ~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~ 402 (477)
+++......++..+..-.. ...|+..-.+.-+ ...-++.....+...|.+.|++.+|...|-. +..-+.
T Consensus 89 ~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~--~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~ 165 (312)
T 2wpv_A 89 KVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE--YKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSM 165 (312)
T ss_dssp CCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS--CTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccH
Confidence 8888888888877654221 2223332222211 1234667788899999999999999998863 222245
Q ss_pred HHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 403 AIWGSLLSSCRTH---GHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 403 ~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
..+..++.-+... |...++--++- ..+--|.-.|+...|..+++...+
T Consensus 166 ~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 166 IKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666655555 54444332222 223335667888888888776643
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.38 E-value=6.3 Score=32.64 Aligned_cols=120 Identities=16% Similarity=0.129 Sum_probs=74.3
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCCh----HHHHHHHHHHHhc
Q 042503 308 GLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNL----EHYGCMVDVLGRS 383 (477)
Q Consensus 308 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 383 (477)
...+.|+.++++..+..-++.. |-|...-..++..+|-.|+++.|.+-++...+. .|+. ..|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAA--- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHH---
Confidence 4556788888888888877775 667777788888888889998888888777632 3433 2344443321
Q ss_pred CCHHHHH-HHHHhc---C-CCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 384 GCVREAY-DLIRSM---S-IRPNAAIWGSLLSSC--RTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 384 g~~~~A~-~~~~~~---~-~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
... ++|.-- + ......-...++.+. ...|+.++|.++-..+.+.-|..+..
T Consensus 79 ----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 79 ----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp ----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred ----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 111 122211 1 111223334444444 34688888888888888877665543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.98 E-value=9.8 Score=34.51 Aligned_cols=96 Identities=9% Similarity=-0.011 Sum_probs=50.6
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcC--CCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHH---
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKG--VSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGC--- 375 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 375 (477)
++..+...|.+.|++++|.+.+.++...- ..--...+...++.+...+++..+...+.++.....-.++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 44556666666666666666666666532 2222345555666666666777666666665432222222222111
Q ss_pred -HHHHHHhcCCHHHHHHHHHhc
Q 042503 376 -MVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 376 -l~~~~~~~g~~~~A~~~~~~~ 396 (477)
-+..+...+++.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 122234556666666666554
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=86.67 E-value=10 Score=29.81 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=26.5
Q ss_pred HHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCC
Q 042503 142 VELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGR 212 (477)
Q Consensus 142 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 212 (477)
+..+...|..+....+.+.+.+++..+-...+.++...++.+....+.+.+..++...-...+.++.+.++
T Consensus 35 ~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 35 AYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33333333333333333333334443333344444444443333333333333343333333333333333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.34 E-value=6.9 Score=26.67 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 385 CVREAYDLIRSM---SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 385 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
+.-+..+-++.+ ..-|++.+..+.+++|.+.+|+..|.++++-+...-.+...+|-.+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 333445555554 678899999999999999999999999998887655444555655543
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=84.35 E-value=9.1 Score=28.55 Aligned_cols=49 Identities=14% Similarity=0.097 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcC--CCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 042503 421 AEHAVKELINLE--PWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVKK 469 (477)
Q Consensus 421 a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 469 (477)
+.++|+.+.+.+ ...+..|...+..+...|++.+|.++++.=++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 556666665443 3334456666666666677777766666666554433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.02 E-value=3.3 Score=37.66 Aligned_cols=61 Identities=7% Similarity=-0.031 Sum_probs=32.8
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhcc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLH-SIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
+...+...+.+.|+++.|.+.+.++.... +...-...+-..++.+...+++..+...+++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34455566666666666666666665311 11112344555555666666666666655555
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.53 E-value=3.4 Score=29.82 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
+..+-++.+....+-|++......+++|.+.+++..|.++|+.++.+.+ +...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4555666666778889999999999999999999999999999885443 33556766653
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.45 E-value=8.3 Score=26.10 Aligned_cols=30 Identities=3% Similarity=-0.004 Sum_probs=16.4
Q ss_pred HHHHhcCChhhHHHHhcccCCCchHHhHHH
Q 042503 143 ELYTSCGQMDDGMKVFDEMSHRDVIVRNLM 172 (477)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 172 (477)
..+...|++++|..+.+...-||...|.++
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~AL 76 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFAL 76 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHH
Confidence 344555666666665555555555555443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.90 E-value=8.9 Score=26.01 Aligned_cols=29 Identities=7% Similarity=0.058 Sum_probs=15.6
Q ss_pred HHHhcCChhhHHHHhcccCCCchHHhHHH
Q 042503 144 LYTSCGQMDDGMKVFDEMSHRDVIVRNLM 172 (477)
Q Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 172 (477)
.+...|++++|..+.+...-||...|.++
T Consensus 49 SLmNrG~Yq~Al~l~~~~c~pdlepw~AL 77 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLAYPDLEPWLAL 77 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSCCGGGHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCCCchHHHHHHH
Confidence 34555555555555555555555555444
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=82.15 E-value=13 Score=28.22 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 402 AAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
..-|......+-..|++.+|.++|+..++..
T Consensus 96 AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 96 AQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3445555555555566666666666655544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 477 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 30/210 (14%), Positives = 74/210 (35%), Gaps = 8/210 (3%)
Query: 252 QWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFK---EIPRKNVVSWNAMISG 308
+ Y ++ + L + G + A + F+ + + ++ + +
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212
Query: 309 LAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP 368
L + V Y + ++ + + GL++ A + + L P
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHG-NLACVYYEQGLIDLAIDTYRRAIELQPHFP 271
Query: 369 NLEHYGCMVDVLGRSGCVREAYDLIR--SMSIRPNAAIWGSLLSSCRTHGHVELAEHAVK 426
+ Y + + L G V EA D +A +L + R G++E A +
Sbjct: 272 --DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329
Query: 427 ELINLEPWNSGNYVLLSNIYAEGGRWDDAE 456
+ + + P + + L+++ + G+ +A
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEAL 359
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 6e-04
Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 10/183 (5%)
Query: 272 NALVDFYCKCGILDTARNVFK---EIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAK 328
L + + I D A + + + V + G +L ++ Y + I
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE- 265
Query: 329 GVSPNKATFVGVL-TCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVR 387
+ P+ L G V +A + + + L + + + ++ G +
Sbjct: 266 -LQPHFPDAYCNLANALKEKGSVAEAEDCYNTA--LRLCPTHADSLNNLANIKREQGNIE 322
Query: 388 EAYDLI-RSMSIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNI 445
EA L +++ + P AA +L S + G ++ A KE I + P + Y + N
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
Query: 446 YAE 448
E
Sbjct: 383 LKE 385
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.7 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.36 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.35 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.33 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.31 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.3 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.28 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.23 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.22 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.19 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.08 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.94 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.94 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.93 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.91 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.9 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.86 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.86 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.84 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.84 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.76 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.74 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.71 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.68 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.62 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.57 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.53 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.5 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.48 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.47 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.46 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.44 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.41 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.4 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.33 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.29 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.23 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.21 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.17 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.16 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.13 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.09 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.01 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.91 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.87 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.69 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.61 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.58 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.1 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.95 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.63 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.35 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.21 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.87 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.25 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.41 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 83.51 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=2.3e-25 Score=202.37 Aligned_cols=372 Identities=13% Similarity=0.103 Sum_probs=275.3
Q ss_pred HHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCCh
Q 042503 72 IKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQM 151 (477)
Q Consensus 72 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 151 (477)
...+.+.|++++|.+.|+++.+.. |-+...+..+...+...|++++|...++.+++..+. +..++..+..+|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 345556677777777777666542 224555666666666677777777777776665432 445666666777777777
Q ss_pred hhHHHHhcccCC---CchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042503 152 DDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRD 225 (477)
Q Consensus 152 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 225 (477)
++|...+....+ .+...+..........+....+......... ................+....+...+.....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence 777776666544 2223333333444444444444444333322 3444555556666677777777777777666
Q ss_pred cCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeH
Q 042503 226 QAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSW 302 (477)
Q Consensus 226 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~ 302 (477)
.. +-+...+..+...+...|+++.|...+..+.+.. |.+..++..+...+...|++++|...+++... .+...+
T Consensus 164 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred cC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC--cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH
Confidence 53 3345666777777888888888888888888877 77788888888999999999999888887654 455667
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh
Q 042503 303 NAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR 382 (477)
Q Consensus 303 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (477)
..+...+.+.|++++|...|++..+.. +.+..++..+..++...|++++|...++..... .+.+...+..+...+..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHH
Confidence 778888999999999999999998875 556788889999999999999999999988743 36677888889999999
Q ss_pred cCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 383 SGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 383 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
.|++++|++.|++. ...|+ ..++..++.++...|++++|+..|+++++++|.++.++..++.+|.+.|+
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999998 55564 57888999999999999999999999999999999999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.1e-23 Score=191.21 Aligned_cols=354 Identities=12% Similarity=0.072 Sum_probs=297.1
Q ss_pred HHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCC---CchHHhHHHHHHHHhcCCh
Q 042503 106 LLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSH---RDVIVRNLMIHGFCKKGDV 182 (477)
Q Consensus 106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 182 (477)
+...+.+.|++++|.+.++++++..+. +...+..+..+|.+.|++++|...|++..+ .+..++..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 445667889999999999999987543 677888899999999999999999998865 3467888999999999999
Q ss_pred HHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHH
Q 042503 183 DKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAE 259 (477)
Q Consensus 183 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 259 (477)
++|.+.+..... .+...+..........+....+........... .................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 999999998875 334445555556666677777776666665554 3344444555566667777888888888887
Q ss_pred HhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHH
Q 042503 260 SSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKAT 336 (477)
Q Consensus 260 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 336 (477)
... |.....+..+...+...|++++|...+++..+ .+...|..+...+...|++++|...+++....+ +.+...
T Consensus 163 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 163 ETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred ccC--cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 777 77788888999999999999999999987654 345678889999999999999999999999876 667788
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHH
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 414 (477)
+..+..++.+.|++++|...|+++.+. .+.+..++..+...+...|++++|.+.++.. ..+.+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 888999999999999999999998843 2456778999999999999999999999988 445677889999999999
Q ss_pred cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 415 HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 415 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.|++++|+..++++++..|+++.++..++.+|.+.|++++|...+++.++..
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999998753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.9e-16 Score=138.01 Aligned_cols=241 Identities=14% Similarity=0.035 Sum_probs=153.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHh
Q 042503 201 NLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCK 280 (477)
Q Consensus 201 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 280 (477)
-.....+.+.|++++|+..|+++.+.. +-+...+..+..++...|+++.|...+.++.+.. |.+...+..++..|..
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK--PDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc--cccccccccccccccc
Confidence 356777889999999999999988764 3356678888888888899999999998888887 7777888888888888
Q ss_pred cCChHHHHHHhccCCCCCce---eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHH
Q 042503 281 CGILDTARNVFKEIPRKNVV---SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELF 357 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 357 (477)
.|++++|.+.+++....++. .+........ ..+.......+..+...+.+.+|...+
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 88888888887765431110 0000000000 000000011111223344555666666
Q ss_pred HHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 358 ASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
.+..+.....++...+..+...+...|++++|+..|++. ...| +...|..++.++...|++++|++.++++++.+|.+
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 655543333344556666666666777777777777665 2233 34566666667777777777777777777777777
Q ss_pred CchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 042503 436 SGNYVLLSNIYAEGGRWDDAETLRMWMRE 464 (477)
Q Consensus 436 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 464 (477)
+.++..++.+|.+.|++++|++.+++.++
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777766655
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.2e-15 Score=132.27 Aligned_cols=268 Identities=12% Similarity=0.049 Sum_probs=201.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 042503 170 NLMIHGFCKKGDVDKGLYLFREMRE--R-SVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLG 246 (477)
Q Consensus 170 ~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 246 (477)
-.....+.+.|++++|++.|+++.+ | +..+|..+..++...|++++|...|.+..+.. +-+...+..+..++...|
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 3556778899999999999999875 3 46689999999999999999999999988764 335677888889999999
Q ss_pred cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHH
Q 042503 247 AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMI 326 (477)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 326 (477)
+++.|...+..+.... +.............. ..+.......+..+...+.+.++...+.+..
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999998876 332221111000000 0111111122233445566788888888887
Q ss_pred HcCC-CCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHH
Q 042503 327 AKGV-SPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAA 403 (477)
Q Consensus 327 ~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 403 (477)
.... .++...+..+...+...|++++|+..|++..... +.+...|..+..+|...|++++|++.|++. ...| +..
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 7532 3456778888899999999999999999988432 456788999999999999999999999998 4455 467
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-----------hHHHHHHHHHhcCCchHHHHH
Q 042503 404 IWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG-----------NYVLLSNIYAEGGRWDDAETL 458 (477)
Q Consensus 404 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------~~~~l~~~~~~~g~~~~A~~~ 458 (477)
++..++.+|.+.|++++|++.|++++++.|.+.. .|..+..++...|+.+.+...
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8999999999999999999999999998877654 345667777777887766443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1e-10 Score=103.41 Aligned_cols=261 Identities=10% Similarity=-0.030 Sum_probs=129.7
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--CC------hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHH
Q 042503 172 MIHGFCKKGDVDKGLYLFREMRE--RS------VVSWNLMISSLGKSGRDSEALRLFHEMRDQAF-ELD----EATVVAV 238 (477)
Q Consensus 172 l~~~~~~~~~~~~a~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l 238 (477)
....+...|++++|++++++..+ |+ ..++..+...+...|++++|...|++...... .++ ...+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34556677788888877776543 22 23456666777777888888777777654311 111 1223344
Q ss_pred HHHhhccCcccchHHHHHHHHHhC----C--ccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--------CCceeHHH
Q 042503 239 LPICARLGAVDIGQWIHSYAESSG----L--YRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--------KNVVSWNA 304 (477)
Q Consensus 239 ~~~~~~~~~~~~a~~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~ 304 (477)
...+...|++..+...+....... . .+.....+..+...+...|+++.+...+..... .....+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 455566666666666666554321 0 011122334455555566666666555544332 01122333
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHc--CCCCC----HHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCC--ChHHHHHH
Q 042503 305 MISGLAFNGRGELGVELYEQMIAK--GVSPN----KATFVGVLTCCAHAGLVEKARELFASMTGLHSIVP--NLEHYGCM 376 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l 376 (477)
....+...++...+...+.+.... ..... ...+..+...+...|+++.|...++.........+ ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 344445555555555555544331 11111 11233334445555566666666555542111111 12233445
Q ss_pred HHHHHhcCCHHHHHHHHHhc-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 377 VDVLGRSGCVREAYDLIRSM-------SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
...+...|++++|...+++. +..|+ ...+..+...|...|++++|.+.+++++++.
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~ 321 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 321 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 55555666666665555544 22222 1344555555566666666666666655543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=5.9e-12 Score=106.11 Aligned_cols=220 Identities=11% Similarity=-0.017 Sum_probs=140.4
Q ss_pred hhHHHHHHHHHHHcCC-CC--CHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHH
Q 042503 213 DSEALRLFHEMRDQAF-EL--DEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARN 289 (477)
Q Consensus 213 ~~~a~~~~~~m~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 289 (477)
.+.++..+++...... .+ ...++..+..++.+.|+++.|...|+++.+.. |.++.++..+..+|.+.|++++|+.
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 3445555555544321 11 12345555666777777777777777777776 7788888888888888888888888
Q ss_pred HhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCC
Q 042503 290 VFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSI 366 (477)
Q Consensus 290 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 366 (477)
.|+++.+ .+..++..+..++...|++++|...+++..+.. +.+......+..++.+.+..+.+..+...... .
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 168 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-S-- 168 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-S--
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-c--
Confidence 8887764 345677888888889999999999999988875 44555554555555555655555555555542 1
Q ss_pred CCChHHHHHHHHHHHhcCC----HHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchH
Q 042503 367 VPNLEHYGCMVDVLGRSGC----VREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNY 439 (477)
Q Consensus 367 ~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 439 (477)
.++...++ ++..+..... .+.+...+... ...|+ ..++..++..+...|++++|...|+++++.+|.+...|
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 22222222 2222222222 22222222221 12232 24677788999999999999999999999999865444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=4.6e-11 Score=103.16 Aligned_cols=208 Identities=14% Similarity=0.158 Sum_probs=107.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHH
Q 042503 199 SWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFY 278 (477)
Q Consensus 199 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 278 (477)
.|+.+...+.+.+.+++|+.+++++++. . |.+..+|.....++
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l-----------------------------------n--P~~~~a~~~r~~~l 87 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL-----------------------------------N--AANYTVWHFRRVLL 87 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH-----------------------------------C--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH-----------------------------------C--CCChHHHHHHHHHH
Confidence 4455555555666666666666666654 3 44444444444444
Q ss_pred HhcC-ChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHH
Q 042503 279 CKCG-ILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAR 354 (477)
Q Consensus 279 ~~~~-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 354 (477)
...| ++++|+..++++.+ .+..+|..+...+.+.|++++|+..++++.+.. +.+...|..+..++...|++++|+
T Consensus 88 ~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 88 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHH
Confidence 4443 24555555544432 233445555555555566666666666665553 445555666666666666666666
Q ss_pred HHHHHhhhccCCCCChHHHHHHHHHHHhcCC------HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHH
Q 042503 355 ELFASMTGLHSIVPNLEHYGCMVDVLGRSGC------VREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVK 426 (477)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 426 (477)
..++++.+.. +.+...|+.+..++.+.+. +++|++.+.+. ...| +...|..+...+ .....+++.+.++
T Consensus 167 ~~~~~al~~~--p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll-~~~~~~~~~~~~~ 243 (315)
T d2h6fa1 167 QYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGIL-QDRGLSKYPNLLN 243 (315)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-TTTCGGGCHHHHH
T ss_pred HHHHHHHHHC--CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHH-HhcChHHHHHHHH
Confidence 6666655321 2344445544444443332 45566555555 3333 344555554433 3334556666666
Q ss_pred HHHhcCCCCCc--hHHHHHHHHH
Q 042503 427 ELINLEPWNSG--NYVLLSNIYA 447 (477)
Q Consensus 427 ~~~~~~p~~~~--~~~~l~~~~~ 447 (477)
++.++.|.... .+..++..|.
T Consensus 244 ~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 244 QLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHhCCCcCCHHHHHHHHHHHH
Confidence 66666654332 3344555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.4e-10 Score=98.52 Aligned_cols=126 Identities=8% Similarity=-0.021 Sum_probs=88.7
Q ss_pred hHHhHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042503 166 VIVRNLMIHGFCKKGDVDKGLYLFREMRE--R-SVVSWNLMISSLGKSG-RDSEALRLFHEMRDQAFELDEATVVAVLPI 241 (477)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 241 (477)
...++.+...+.+.+..++|+++++++.+ | +..+|+....++...| ++++|+..++...+.. +-+...|......
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 44677778888899999999999999986 3 4557888888888876 4899999999988764 3355666666666
Q ss_pred hhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccC
Q 042503 242 CARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEI 294 (477)
Q Consensus 242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 294 (477)
+.+.|++++|...+..+.+.. |.+..+|..+...+...|++++|+..++++
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d--p~n~~a~~~~~~~~~~~~~~~~Al~~~~~a 172 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQL 172 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred HHhhccHHHHHHHHhhhhhhh--hcchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 777777777777777777666 555555555555544444444444444443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=5.5e-10 Score=98.53 Aligned_cols=260 Identities=10% Similarity=0.031 Sum_probs=164.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHhcccCC--Cc------hHHhHHHHHHHHhcCChHHHHHHHHhcCC-----CC----hhh
Q 042503 137 IRIGVVELYTSCGQMDDGMKVFDEMSH--RD------VIVRNLMIHGFCKKGDVDKGLYLFREMRE-----RS----VVS 199 (477)
Q Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~ 199 (477)
........+...|++++|.+++++..+ |+ ...+..+...+...|++++|.+.|++..+ ++ ...
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 334445667788888888888876543 22 23556677778888888888888887653 11 224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC---HHHHHHHHHHhhccCcccchHHHHHHHHHhCCc---cchhH
Q 042503 200 WNLMISSLGKSGRDSEALRLFHEMRDQ----AFELD---EATVVAVLPICARLGAVDIGQWIHSYAESSGLY---RKVVS 269 (477)
Q Consensus 200 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 269 (477)
+..+...+...|++..+...+...... +..+. ...+..+...+...|+++.+...+......... .....
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 556667777888888888888775432 11111 123445556677788888888888777654321 22334
Q ss_pred HHHHHHHHHHhcCChHHHHHHhccCCC-------C---CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCC---CCHHH
Q 042503 270 VGNALVDFYCKCGILDTARNVFKEIPR-------K---NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVS---PNKAT 336 (477)
Q Consensus 270 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---~~~~~ 336 (477)
.+......+...+++..+...+.+... . ....+..+...+...|++++|...+++....... .....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 445556667777777777666554321 1 1123455566677788888888888776553222 12344
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhc---cCCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMTGL---HSIVPN-LEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
+..+..++...|++++|...++.+... .+..|+ ...+..+..+|.+.|++++|.+.+++.
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556677788888888888888776521 122232 345667778888888888888888765
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.28 E-value=2.8e-10 Score=98.09 Aligned_cols=162 Identities=7% Similarity=-0.051 Sum_probs=74.3
Q ss_pred eHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHH-
Q 042503 301 SWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDV- 379 (477)
Q Consensus 301 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~- 379 (477)
.|...+......|+++.|..+|+++...........|...+..+.+.|+.+.|..+|+++.+.. +.+...|......
T Consensus 101 l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~--~~~~~~~~~~a~~e 178 (308)
T d2onda1 101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 3444444444555555555555555443212223344455555555555555555555554211 2222223222222
Q ss_pred HHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc----hHHHHHHHHHhcCCch
Q 042503 380 LGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG----NYVLLSNIYAEGGRWD 453 (477)
Q Consensus 380 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~ 453 (477)
+...|+.+.|..+|+.+ ..+.+...|...+..+...|++++|..+|+++++..|.++. .|..++......|+.+
T Consensus 179 ~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~ 258 (308)
T d2onda1 179 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHH
Confidence 22234555555555555 21223444555555555555555555555555554443322 3444444444555555
Q ss_pred HHHHHHHHHHh
Q 042503 454 DAETLRMWMRE 464 (477)
Q Consensus 454 ~A~~~~~~~~~ 464 (477)
.+.++.+++.+
T Consensus 259 ~~~~~~~r~~~ 269 (308)
T d2onda1 259 SILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=9.8e-10 Score=94.62 Aligned_cols=187 Identities=12% Similarity=0.039 Sum_probs=150.2
Q ss_pred cccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCC--C-C-ceeHHHHHHHHHhcCCchHHHHHH
Q 042503 247 AVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPR--K-N-VVSWNAMISGLAFNGRGELGVELY 322 (477)
Q Consensus 247 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~a~~~~ 322 (477)
..+.+..+++++.+... |.+...|...+..+.+.|+++.|..+|+++.+ | + ...|...+..+.+.|+.+.|..+|
T Consensus 79 ~~~~a~~i~~ral~~~~-p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 79 FSDEAANIYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45678888888887654 77778888899999999999999999998765 2 2 236888888889999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHH-hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc----C
Q 042503 323 EQMIAKGVSPNKATFVGVLTC-CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM----S 397 (477)
Q Consensus 323 ~~m~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~ 397 (477)
+++.+.+ +.+...|...... +...|+.+.|..+|+.+.+. .+.+...|..++..+.+.|+++.|..+|++. +
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 9998875 4444445444432 34568999999999999854 3567788999999999999999999999997 3
Q ss_pred CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc
Q 042503 398 IRPN--AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG 437 (477)
Q Consensus 398 ~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 437 (477)
..|+ ...|...+..-...|+.+.+..+++++.+..|....
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 3443 458888888888999999999999999998887644
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=2.2e-11 Score=102.48 Aligned_cols=214 Identities=12% Similarity=0.001 Sum_probs=150.4
Q ss_pred cchHHHHHHHHHhCC--ccchhHHHHHHHHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHH
Q 042503 249 DIGQWIHSYAESSGL--YRKVVSVGNALVDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYE 323 (477)
Q Consensus 249 ~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 323 (477)
+.+..-++++..... .+....++..++.+|.+.|++++|+..|++..+ .++.+|+.+..++.+.|++++|+..|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 344444555554321 133455777889999999999999999998765 466789999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH
Q 042503 324 QMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA 402 (477)
Q Consensus 324 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 402 (477)
++.+.. +.+..++..+..++...|+++.|...|+...+.. +.+......+...+.+.+..+.+..+.... ...++.
T Consensus 96 ~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T d1xnfa_ 96 SVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 172 (259)
T ss_dssp HHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence 999975 5567788899999999999999999999998532 344555444555566666555555544444 222222
Q ss_pred HHHHHHHHHHH----HcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 403 AIWGSLLSSCR----THGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 403 ~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
..+. ++..+. ..+..+.+...+.......|....++..++..|...|++++|.+.+++.++.+
T Consensus 173 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 173 WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2222 122221 12234444444444455556667789999999999999999999999998765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=1e-10 Score=102.40 Aligned_cols=230 Identities=7% Similarity=-0.137 Sum_probs=163.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC--cccchHHHHHHHHHhCCccchhHHH-HHHHHHHHhcCChH
Q 042503 209 KSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLG--AVDIGQWIHSYAESSGLYRKVVSVG-NALVDFYCKCGILD 285 (477)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~ 285 (477)
..|++++|+..++...+.. +-+...+.....++...+ +++.+...+..+.... +.....+ ......+...+.++
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC--chhhhhhhhHHHHHHHhccccH
Confidence 3445677888888877653 335555555555555544 4678888888888876 5555544 45567777889999
Q ss_pred HHHHHhccCCCC---CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhh
Q 042503 286 TARNVFKEIPRK---NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTG 362 (477)
Q Consensus 286 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 362 (477)
.|+..++.+.+. +...|+.+..++.+.|++++|...++..... .|+. ......+...+..+.+...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999988874 4456777888888899888876666554443 1111 1122233444555667777777663
Q ss_pred ccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 363 LHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 363 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
. .+++...+..++..+...|+.++|...+.+. ...|+ ...+..++.++...|++++|.+.++++++++|.+...|.
T Consensus 237 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 G--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp S--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred h--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 2 2455556667778888889999999999888 55554 467888899999999999999999999999998888888
Q ss_pred HHHHHHHh
Q 042503 441 LLSNIYAE 448 (477)
Q Consensus 441 ~l~~~~~~ 448 (477)
.|...+.-
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 88777653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=1.3e-10 Score=101.57 Aligned_cols=230 Identities=8% Similarity=-0.074 Sum_probs=157.2
Q ss_pred hcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHhhccCcccch
Q 042503 178 KKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSG--RDSEALRLFHEMRDQAFELDEATV-VAVLPICARLGAVDIG 251 (477)
Q Consensus 178 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~a 251 (477)
..|.+++|+..++.... .+...|..+..++...+ ++++|...+..+.... +++...+ ......+...+..+.|
T Consensus 85 ~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence 34556667777766654 34455666666666554 4678888888877763 2334443 3344556667788888
Q ss_pred HHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 042503 252 QWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVS 331 (477)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 331 (477)
...++.+.+.+ |.+..+|..+...+.+.|++++|...+....+-.+.. ......+...+..+++...+....... +
T Consensus 164 l~~~~~~i~~~--p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~-~ 239 (334)
T d1dcea1 164 LAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE-LELVQNAFFTDPNDQSAWFYHRWLLGR-A 239 (334)
T ss_dssp HHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH-HHHHHHHHHHCSSCSHHHHHHHHHHSC-C
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH-HHHHHHHHHhcchhHHHHHHHHHHHhC-c
Confidence 88888887777 7788888888888888888888776666554422221 223334556677888888888887765 5
Q ss_pred CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHH
Q 042503 332 PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLL 409 (477)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~ 409 (477)
++...+..+...+...++.++|...+.+..+. .+.+...+..++.+|.+.|++++|++.+++. .+.|+. ..|..+.
T Consensus 240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~ 317 (334)
T d1dcea1 240 EPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317 (334)
T ss_dssp CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 55556667777778889999999998888732 2345567788888999999999999999998 666754 4556665
Q ss_pred HHHHH
Q 042503 410 SSCRT 414 (477)
Q Consensus 410 ~~~~~ 414 (477)
..+.-
T Consensus 318 ~~~~~ 322 (334)
T d1dcea1 318 SKFLL 322 (334)
T ss_dssp HHHHH
T ss_pred HHHhH
Confidence 55543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.2e-08 Score=73.17 Aligned_cols=103 Identities=15% Similarity=0.057 Sum_probs=57.7
Q ss_pred HHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-C-CCCCHHHHHHHHHHHHHcCCh
Q 042503 341 LTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-S-IRPNAAIWGSLLSSCRTHGHV 418 (477)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~ 418 (477)
...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..+++. . .+.+...|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 344555566666666666655321 344455555566666666666666666555 2 233445556666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH
Q 042503 419 ELAEHAVKELINLEPWNSGNYVLLSNI 445 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 445 (477)
++|+..++++++.+|.++..+..+.++
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 666666666666666665555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=2.3e-08 Score=78.82 Aligned_cols=141 Identities=6% Similarity=-0.113 Sum_probs=97.5
Q ss_pred HHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHH
Q 042503 275 VDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAR 354 (477)
Q Consensus 275 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 354 (477)
...+...|+++.|++.|+++..+++.+|..+..++...|++++|+..|++.++.. +.+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 5567788888888888888888888888888888888888888888888888876 667778888888888888888888
Q ss_pred HHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q 042503 355 ELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEP 433 (477)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 433 (477)
..|++..... +.+... .+...| ...+++ ..++..+..++...|++++|.+.+++++++.|
T Consensus 91 ~~~~kAl~~~--~~n~~~------~~~~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQL--RGNQLI------DYKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHTT--TTCSEE------ECGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhC--ccCchH------HHHHhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8888876311 111100 000000 000111 23455566677777777777777777777776
Q ss_pred CC
Q 042503 434 WN 435 (477)
Q Consensus 434 ~~ 435 (477)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 53
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=4.9e-09 Score=83.93 Aligned_cols=120 Identities=8% Similarity=-0.160 Sum_probs=91.3
Q ss_pred CCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCC-HHHHHHHH
Q 042503 332 PNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPN-AAIWGSLL 409 (477)
Q Consensus 332 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 409 (477)
|+...+......+.+.|++++|+..|+++.+.. |.+...|..+..+|.+.|++++|+..|++. .+.|+ ...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 677777778888888888888888888877432 556777888888888888888888888888 66664 56788888
Q ss_pred HHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCch
Q 042503 410 SSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWD 453 (477)
Q Consensus 410 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 453 (477)
.+|...|++++|+..|++++++.|.+...+...+..+...+...
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~ 123 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 123 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888888776666666665555444333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.2e-08 Score=73.10 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=84.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 042503 375 CMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (477)
.-...+.+.|++++|+..|++. .. +.+...|..++.++...|++++|+..++++++.+|.++..|..++.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3466788999999999999998 33 446678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 042503 453 DDAETLRMWMRENN 466 (477)
Q Consensus 453 ~~A~~~~~~~~~~~ 466 (477)
++|+..+++.++..
T Consensus 88 ~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=2.8e-08 Score=78.29 Aligned_cols=121 Identities=14% Similarity=-0.001 Sum_probs=100.7
Q ss_pred HHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCCh
Q 042503 341 LTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHV 418 (477)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 418 (477)
...+...|+++.|++.|.++. +|+..+|..+..+|...|++++|++.|++. .+.| +...|..++.++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccH
Confidence 345677899999999998764 577788889999999999999999999998 4444 567899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 419 ELAEHAVKELINLEPWNS----------------GNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
++|+..|++++...|.+. .++..++.++.+.|++++|.+.+++.++..
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999987655432 346688999999999999999999887654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.86 E-value=2e-08 Score=85.33 Aligned_cols=193 Identities=12% Similarity=-0.018 Sum_probs=117.1
Q ss_pred HHHHHHHHHhcCChHHHHHHhccCCC-----CC----ceeHHHHHHHHHhcCCchHHHHHHHHHHHc----CC-CCCHHH
Q 042503 271 GNALVDFYCKCGILDTARNVFKEIPR-----KN----VVSWNAMISGLAFNGRGELGVELYEQMIAK----GV-SPNKAT 336 (477)
Q Consensus 271 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~ 336 (477)
|......|...|++++|...|.+..+ .+ ..+|..+..+|.+.|++++|...+++..+. |. .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 34455666777777777777766543 12 245677777788888888888888776552 10 111334
Q ss_pred HHHHHHHhh-ccccHHHHHHHHHHhhhc---cCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-------CH-
Q 042503 337 FVGVLTCCA-HAGLVEKARELFASMTGL---HSIVP-NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-------NA- 402 (477)
Q Consensus 337 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~- 402 (477)
+..+...|. ..|++++|+..+++..+. .+.++ ...++..+...|...|++++|++.|++. ...| ..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 555565664 458888888888776531 11111 1345677788888888888888888886 1111 11
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-----hHHHHHHHHHh--cCCchHHHHHHHHHH
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG-----NYVLLSNIYAE--GGRWDDAETLRMWMR 463 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~~ 463 (477)
..+...+..+...|+++.|...++++.+.+|..+. ....++.++.. .+.+++|+..++++.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 23445555667788888888888888888765333 23445555544 345777777765443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.86 E-value=5.8e-09 Score=74.15 Aligned_cols=90 Identities=14% Similarity=-0.032 Sum_probs=82.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCC
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGR 451 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 451 (477)
-.+...+.+.|++++|+..|++. ...| +...|..++.++.+.|++++|+..++++++.+|.++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34677888999999999999998 4455 578999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHH
Q 042503 452 WDDAETLRMWMR 463 (477)
Q Consensus 452 ~~~A~~~~~~~~ 463 (477)
+++|.+.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.84 E-value=8.8e-09 Score=82.41 Aligned_cols=96 Identities=9% Similarity=-0.030 Sum_probs=68.7
Q ss_pred CceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHH
Q 042503 298 NVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMV 377 (477)
Q Consensus 298 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 377 (477)
+...+...+..+.+.|++++|+..|++.++.. |.+...|..+..+|.+.|++++|+..|+++.+. .+-+..+|..+.
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg 79 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHHH
Confidence 33445556677777788888888887777765 566777777777778888888888888777732 133466777777
Q ss_pred HHHHhcCCHHHHHHHHHhc
Q 042503 378 DVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 378 ~~~~~~g~~~~A~~~~~~~ 396 (477)
.+|.+.|++++|+..|+++
T Consensus 80 ~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 7788888888887777766
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=4.1e-08 Score=74.86 Aligned_cols=118 Identities=13% Similarity=0.062 Sum_probs=97.1
Q ss_pred HHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcC
Q 042503 339 GVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHG 416 (477)
Q Consensus 339 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~ 416 (477)
.....|.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..|+++ ...| +...|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc--hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 34567789999999999999998533 567788999999999999999999999998 4444 4579999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCCchHHHHHHHHH--hcCCchHHHHH
Q 042503 417 HVELAEHAVKELINLEPWNSGNYVLLSNIYA--EGGRWDDAETL 458 (477)
Q Consensus 417 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~ 458 (477)
++++|...+++++.+.|.++..+..+..+.. ..+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999998888776643 44556666554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=4e-08 Score=70.47 Aligned_cols=107 Identities=18% Similarity=0.016 Sum_probs=84.0
Q ss_pred HHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC---HHHHHHHHHhc-CCCCCH---HHHHHHHH
Q 042503 338 VGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC---VREAYDLIRSM-SIRPNA---AIWGSLLS 410 (477)
Q Consensus 338 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~ 410 (477)
..++..+...+++++|++.|++..+.. +.+..++..+..++.+.++ +++|+.+|+++ ...|++ .++..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 456777888899999999999988432 5677888888888887554 45689999887 444543 36788999
Q ss_pred HHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 411 SCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 411 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
+|.+.|++++|++.|+++++++|.+..+......+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 999999999999999999999999887766554443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=6e-08 Score=73.93 Aligned_cols=92 Identities=12% Similarity=0.022 Sum_probs=83.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 042503 375 CMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 375 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (477)
.....|.+.|++++|+..|++. ...| +...|..++.+|...|++++|...|+++++.+|.++.+|..++.+|...|++
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 3456788999999999999999 4444 5688999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 042503 453 DDAETLRMWMRENN 466 (477)
Q Consensus 453 ~~A~~~~~~~~~~~ 466 (477)
++|...+++.+...
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=1.5e-07 Score=79.85 Aligned_cols=165 Identities=10% Similarity=-0.044 Sum_probs=124.8
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHc----CCCC-CHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCC----hHH
Q 042503 302 WNAMISGLAFNGRGELGVELYEQMIAK----GVSP-NKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPN----LEH 372 (477)
Q Consensus 302 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 372 (477)
|......|...|++++|...|.+..+. +-++ -..+|..+..+|.+.|++++|...+++..+...-..+ ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 445678899999999999999988763 2122 2457888999999999999999999987642211112 345
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHhc-------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc------
Q 042503 373 YGCMVDVLGR-SGCVREAYDLIRSM-------SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG------ 437 (477)
Q Consensus 373 ~~~l~~~~~~-~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------ 437 (477)
+..+...|.. .|++++|++.+++. +..+. ..++..++..+...|++++|...++++....|.++.
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 6667777754 69999999999887 11111 346788899999999999999999999998876643
Q ss_pred -hHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 438 -NYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 438 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+...+..+...|+++.|.+.+++..+..
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~ 229 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 24566677788999999999999887764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.8e-07 Score=70.80 Aligned_cols=85 Identities=12% Similarity=-0.024 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE 448 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (477)
.+|+.+..+|.+.|++++|+..+++. ...| ++..+..++.++...|++++|+..|+++++++|.++.+...+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35777889999999999999999998 4455 678999999999999999999999999999999999999999888776
Q ss_pred cCCchHH
Q 042503 449 GGRWDDA 455 (477)
Q Consensus 449 ~g~~~~A 455 (477)
.+...+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.62 E-value=1e-05 Score=67.20 Aligned_cols=227 Identities=9% Similarity=-0.057 Sum_probs=134.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cCcccchHHHHHHHHHhCCccchhHHHH
Q 042503 197 VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICAR----LGAVDIGQWIHSYAESSGLYRKVVSVGN 272 (477)
Q Consensus 197 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 272 (477)
+..+..|...+.+.+++++|+.+|++..+.| +...+..+...+.. ..+...+...+....+.+.
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~--------- 69 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY--------- 69 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---------
Confidence 3445556666666777777777777776654 33333333333332 2233444444444443331
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCCHHHHHHHHHH--hhc
Q 042503 273 ALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAF----NGRGELGVELYEQMIAKGVSPNKATFVGVLTC--CAH 346 (477)
Q Consensus 273 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~--~~~ 346 (477)
+.....+...+.. .++.+.|...++.....|.. ........... ...
T Consensus 70 --------------------------~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~-~a~~~l~~~~~~~~~~ 122 (265)
T d1ouva_ 70 --------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA-EGCASLGGIYHDGKVV 122 (265)
T ss_dssp --------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCSSS
T ss_pred --------------------------cchhhccccccccccccchhhHHHHHHHhhhhhhhhh-hHHHhhcccccCCCcc
Confidence 1122222222221 34556677777777666522 22111111111 123
Q ss_pred cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCCh
Q 042503 347 AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR----SGCVREAYDLIRSMSIRPNAAIWGSLLSSCRT----HGHV 418 (477)
Q Consensus 347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 418 (477)
......+...+..... ..+...+..|...|.. ..+...+..+++...-..+......+...+.. .+++
T Consensus 123 ~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCH
T ss_pred cchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccch
Confidence 4456667777766653 3556667777777764 45677777777776334467777777777765 5689
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchHHHHHHHHHHhCCCc
Q 042503 419 ELAEHAVKELINLEPWNSGNYVLLSNIYAE----GGRWDDAETLRMWMRENNVK 468 (477)
Q Consensus 419 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 468 (477)
+.|+..|+++.+.+ ++.++..|+.+|.+ ..+.++|.+++++..+.|..
T Consensus 199 ~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 199 KEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 99999999998876 47788889998886 34788999999998887754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=3.9e-07 Score=70.00 Aligned_cols=64 Identities=9% Similarity=-0.093 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+|+.+..+|.+.|++++|+..++++++++|.++.++..++.+|...|++++|...+++.++..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4677788999999999999999999999999999999999999999999999999999998864
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.53 E-value=1.4e-06 Score=66.67 Aligned_cols=94 Identities=7% Similarity=-0.025 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE 448 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (477)
.+|+.+..+|.+.|++++|+..+++. .. +.+...|..++.++...|++++|...|+++++++|.++.+...+..+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35677888999999999999999998 33 45678999999999999999999999999999999999999988888777
Q ss_pred cCCchH-HHHHHHHHHh
Q 042503 449 GGRWDD-AETLRMWMRE 464 (477)
Q Consensus 449 ~g~~~~-A~~~~~~~~~ 464 (477)
.+...+ ..+.+.+|.+
T Consensus 145 ~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 145 AKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 665543 4555555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=4e-07 Score=66.11 Aligned_cols=93 Identities=11% Similarity=0.041 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCc-------hHHHHH
Q 042503 373 YGCMVDVLGRSGCVREAYDLIRSM-SIR-PNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSG-------NYVLLS 443 (477)
Q Consensus 373 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 443 (477)
+..+...+.+.|++++|+..|++. ... .+...+..+..+|.+.|++++|+..++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677788888888888888887 333 35678888888888899999999999998888877665 445566
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 042503 444 NIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 444 ~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
..+...+++++|++.+++.+..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhc
Confidence 6677778888888888877653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.48 E-value=1e-06 Score=66.18 Aligned_cols=77 Identities=14% Similarity=0.015 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 042503 371 EHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYA 447 (477)
Q Consensus 371 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 447 (477)
.+|..+..+|.+.|++++|++.+++. ...| +..+|..++.++...|++++|+..|+++++++|.++.+...+..+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 35666777777888888888887776 3333 55777778888888888888888888888888877777666655543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.3e-08 Score=93.52 Aligned_cols=95 Identities=13% Similarity=-0.053 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE 448 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 448 (477)
...+..+...+.+.|+.++|...+++. ...| ..++..++..+...|++++|+..|+++++++|++..+|+.|+.++..
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp -----------------------CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344445555555555555555544443 1111 23445555555556666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHHhC
Q 042503 449 GGRWDDAETLRMWMREN 465 (477)
Q Consensus 449 ~g~~~~A~~~~~~~~~~ 465 (477)
.|+..+|...+.+.+..
T Consensus 199 ~~~~~~A~~~y~ral~~ 215 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp TTCHHHHHHHHHHHHSS
T ss_pred cCCHHHHHHHHHHHHhC
Confidence 66666666655555543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=2e-07 Score=66.79 Aligned_cols=93 Identities=6% Similarity=-0.096 Sum_probs=79.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCC--CchHHHHHHHH
Q 042503 374 GCMVDVLGRSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRTHG---HVELAEHAVKELINLEPWN--SGNYVLLSNIY 446 (477)
Q Consensus 374 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 446 (477)
..++..+...+++++|.+.|++. .. +.++.++..++.++.+.+ ++++|+.+++++++.+|.+ +.++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45778888999999999999998 33 456789999999998755 5567999999999988754 34889999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 042503 447 AEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 447 ~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+.|++++|++.|+++++..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999999864
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.44 E-value=1.4e-06 Score=65.49 Aligned_cols=64 Identities=11% Similarity=-0.032 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.++..++.+|.+.|++++|++.++++++.+|.+..+|..++.+|...|++++|...|++.++.+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4677889999999999999999999999999999999999999999999999999999998764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.41 E-value=1.2e-06 Score=67.44 Aligned_cols=121 Identities=13% Similarity=0.024 Sum_probs=84.1
Q ss_pred HHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCChH
Q 042503 340 VLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAAIWGSLLSSCRTHGHVE 419 (477)
Q Consensus 340 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 419 (477)
........|++++|.+.|....+...-.+-.. +....-......-++.. ....+..++..+...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQFVEPFATALVED----KVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCch
Confidence 34456778888888888888774321111000 00000001111111111 2356778889999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHh-----CCCccCCC
Q 042503 420 LAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRE-----NNVKKSPG 472 (477)
Q Consensus 420 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 472 (477)
+|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++.+ .|+.|+|.
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999999999999999999999999999999999743 58877653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.40 E-value=1.5e-06 Score=66.65 Aligned_cols=86 Identities=13% Similarity=-0.023 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 042503 369 NLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIY 446 (477)
Q Consensus 369 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 446 (477)
....|..+..+|.+.|++++|+..++++ .+.| +...|..++.++...|++++|+..|+++++++|.++.+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4456777888899999999999999988 5545 4578899999999999999999999999999999988888887776
Q ss_pred HhcCCchH
Q 042503 447 AEGGRWDD 454 (477)
Q Consensus 447 ~~~g~~~~ 454 (477)
.+.....+
T Consensus 156 ~~l~~~~~ 163 (169)
T d1ihga1 156 QKIKAQKD 163 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.33 E-value=5.1e-06 Score=63.43 Aligned_cols=64 Identities=13% Similarity=-0.026 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 403 AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
.+|..+..+|.+.|++++|+..++++++++|.++.++..++.+|...|++++|...+++.++..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3566788899999999999999999999999999999999999999999999999999998764
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=2.5e-06 Score=60.08 Aligned_cols=86 Identities=8% Similarity=-0.076 Sum_probs=39.9
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCC
Q 042503 306 ISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGC 385 (477)
Q Consensus 306 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 385 (477)
...+.+.|++++|...+++.+... |-+...|..+..++.+.|++++|+..|++..+.. +.+...+..+..+|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHCCC
Confidence 334444555555555555554443 3344444445555555555555555555444211 2334444444444444444
Q ss_pred HHHHHHHHH
Q 042503 386 VREAYDLIR 394 (477)
Q Consensus 386 ~~~A~~~~~ 394 (477)
+++|++.++
T Consensus 100 ~~~A~~~l~ 108 (112)
T d1hxia_ 100 ANAALASLR 108 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.29 E-value=1.9e-06 Score=66.05 Aligned_cols=65 Identities=11% Similarity=-0.042 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 402 AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
...+..+..++.+.|++++|+..++++++++|.++.+|..++.+|.+.|++++|+..+++.++..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 45678888999999999999999999999999999999999999999999999999999998854
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.23 E-value=0.00012 Score=60.37 Aligned_cols=227 Identities=9% Similarity=-0.087 Sum_probs=117.7
Q ss_pred hHHhHHHHHHHHhcCChHHHHHHHHhcCC-CChhhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042503 166 VIVRNLMIHGFCKKGDVDKGLYLFREMRE-RSVVSWNLMISSLGK----SGRDSEALRLFHEMRDQAFELDEATVVAVLP 240 (477)
Q Consensus 166 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 240 (477)
+..+..|...+.+.+++++|++.|++..+ .+...+..|...|.. ..++..|...+......+ +......+..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 34455556666667777777777776654 355555556666655 456777777777766655 2222222222
Q ss_pred Hh----hccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCceeHHHHHHHHHhcCCch
Q 042503 241 IC----ARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNVVSWNAMISGLAFNGRGE 316 (477)
Q Consensus 241 ~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 316 (477)
.+ ...++.+.+...++.....+. +... ..+...+.... .......
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~--~~l~~~~~~~~---------------------------~~~~~~~ 127 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKY--AEGC--ASLGGIYHDGK---------------------------VVTRDFK 127 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHH--HHHHHHHHHCS---------------------------SSCCCHH
T ss_pred ccccccccchhhHHHHHHHhhhhhhhh--hhHH--HhhcccccCCC---------------------------cccchhH
Confidence 22 223445556666666666552 2111 11111111100 0112223
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhc----cccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----cCCHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAH----AGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR----SGCVRE 388 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 388 (477)
.+...+......+ +...+..+...+.. ..+...+...++...+ ..+......+...|.. ..++++
T Consensus 128 ~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~----~g~~~A~~~lg~~y~~g~~~~~d~~~ 200 (265)
T d1ouva_ 128 KAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD----LKDSPGCFNAGNMYHHGEGATKNFKE 200 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCCCHHH
T ss_pred HHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhcccc----ccccccccchhhhcccCcccccchhh
Confidence 3444444433322 33344444444432 3455566666665552 2344455555555543 456777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 042503 389 AYDLIRSMSIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEP 433 (477)
Q Consensus 389 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 433 (477)
|+.+|++....-++..+..|...|.. .++.++|.+.|+++.+.+.
T Consensus 201 A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 201 ALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 77777777222345566666666654 3377778888888877764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=8.1e-06 Score=58.95 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=27.3
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhh
Q 042503 305 MISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMT 361 (477)
Q Consensus 305 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 361 (477)
+...+.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|+..++++.
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3444444555555555555555443 3344444445555555555555555554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.21 E-value=0.00093 Score=56.25 Aligned_cols=136 Identities=5% Similarity=-0.005 Sum_probs=73.1
Q ss_pred CCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHHHHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHH
Q 042503 98 PDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVVELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFC 177 (477)
Q Consensus 98 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 177 (477)
||..-...+...|.+.|.++.|..++..+ .-|..++..+.+.++++.|.+.+.... +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 45555556667777788888887777643 335566677777777777777776543 4446777777776
Q ss_pred hcCChHHHHHHHHhcCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Q 042503 178 KKGDVDKGLYLFREMRERSVVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLG 246 (477)
Q Consensus 178 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 246 (477)
+......+.- .......+......++..|...|.+++...+++..... -.++...++.++..+++.+
T Consensus 81 ~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 81 DGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred hCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 6665544322 11111233344456677777777777777777765533 2445566666666666643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=5.5e-06 Score=56.11 Aligned_cols=76 Identities=13% Similarity=0.018 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 370 LEHYGCMVDVLGRSGCVREAYDLIRSM--------SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 370 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
...+-.+...+.+.|++++|+..|++. ...++ ..++..++.++.+.|++++|+..++++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 344556778888888888888888776 11222 468899999999999999999999999999999998888
Q ss_pred HHHHH
Q 042503 441 LLSNI 445 (477)
Q Consensus 441 ~l~~~ 445 (477)
.+...
T Consensus 85 Nl~~~ 89 (95)
T d1tjca_ 85 NLKYF 89 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=0.0014 Score=55.14 Aligned_cols=245 Identities=10% Similarity=-0.017 Sum_probs=142.9
Q ss_pred CCcchHHHHHHHHHhcCCCchHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCchhHHHHHHHHHHhcccCcchHHHHHH
Q 042503 63 PSVLLFNSMIKAYSLNGPSEEPVKLFALLKNLGIWPDEYTFAPLLKACLGVGDLRVGQCVHGEIIRSGFERFGSIRIGVV 142 (477)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 142 (477)
||..--..+++-|.+.|.++.|..+|..+.+ |..++..+.+.+++..|.+++... -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 6666666788888999999999999987654 778889999999999988876543 2556888888
Q ss_pred HHHHhcCChhhHHHHhcccCCCchHHhHHHHHHHHhcCChHHHHHHHHhcCC---CChhhHHHHHHHHHhcCChhHHHHH
Q 042503 143 ELYTSCGQMDDGMKVFDEMSHRDVIVRNLMIHGFCKKGDVDKGLYLFREMRE---RSVVSWNLMISSLGKSGRDSEALRL 219 (477)
Q Consensus 143 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 219 (477)
..+.+..+...|.- .......+......++..|-..|.+++...+++.... .+...++.++..|++.+ .++..+.
T Consensus 77 ~~l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~ 154 (336)
T d1b89a_ 77 FACVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREH 154 (336)
T ss_dssp HHHHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHH
Confidence 88888777655533 2222223444556788999999999999999997653 56667888999888864 3443333
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHHhCCccchhHHHHHHHHHHHhcCChHHHHHHhccCCCCCc
Q 042503 220 FHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAESSGLYRKVVSVGNALVDFYCKCGILDTARNVFKEIPRKNV 299 (477)
Q Consensus 220 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 299 (477)
+ ...+-..|. ..++..|...+- |..++..|.+.|+++.|..+.-.-. ++.
T Consensus 155 l---~~~s~~y~~---~k~~~~c~~~~l-----------------------~~elv~Ly~~~~~~~~A~~~~i~~~-~~~ 204 (336)
T d1b89a_ 155 L---ELFWSRVNI---PKVLRAAEQAHL-----------------------WAELVFLYDKYEEYDNAIITMMNHP-TDA 204 (336)
T ss_dssp H---HHHSTTSCH---HHHHHHHHTTTC-----------------------HHHHHHHHHHTTCHHHHHHHHHHST-TTT
T ss_pred H---HhccccCCH---HHHHHHHHHcCC-----------------------hHHHHHHHHhcCCHHHHHHHHHHcc-hhh
Confidence 3 332212221 222333333322 3456667777788877766554321 233
Q ss_pred eeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHH
Q 042503 300 VSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFA 358 (477)
Q Consensus 300 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (477)
......+..+.+..+++...++.....+. .|+ ..+.++......-+..+..+.++
T Consensus 205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~~r~V~~~~ 259 (336)
T d1b89a_ 205 WKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRAVNYFS 259 (336)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHHHHHHH
T ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCHHHHHHHHH
Confidence 34455666677777777666666655543 232 23445554444445555444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.16 E-value=4.2e-07 Score=83.24 Aligned_cols=220 Identities=10% Similarity=-0.098 Sum_probs=104.9
Q ss_pred HHHHHHHhcCC--CC-hhhHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCcccchHHHHHHHHH
Q 042503 184 KGLYLFREMRE--RS-VVSWNLMISSLGKSGRDSEALRLFHEMRDQAFELDEATVVAVLPICARLGAVDIGQWIHSYAES 260 (477)
Q Consensus 184 ~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 260 (477)
+|.+.|++..+ |+ ...+..+..++...|++++| |+++... .|+...-......+- ...+..+...++...+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW-NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH-HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH-HHHHHHHHHHHHHhcc
Confidence 56677777653 33 34566677777777777766 5565543 222111000000000 1123344455555544
Q ss_pred hCCccchhHHHHHH-HHHHHhcCChHHHHHHhccCCC---CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHH
Q 042503 261 SGLYRKVVSVGNAL-VDFYCKCGILDTARNVFKEIPR---KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKAT 336 (477)
Q Consensus 261 ~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 336 (477)
....+........+ .......+.++.++..+....+ ++...+..+...+.+.|+.++|...++...... ...+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~ 154 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHC 154 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH---HHHH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHH
Confidence 33212222221111 2222334566667666665543 344556666667777777777777666655432 1345
Q ss_pred HHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHH
Q 042503 337 FVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRT 414 (477)
Q Consensus 337 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 414 (477)
+..+...+...|++++|...|++..+.. |.+...|+.|...+...|+..+|+..|.+. -.+|-+.++..|...+.+
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~--P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 6667777777777777777777777432 455567777777777777777777777776 334556666776665544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.13 E-value=8.5e-06 Score=60.23 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=47.9
Q ss_pred HHHHHHHHHhc-CCCC-CHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCc
Q 042503 386 VREAYDLIRSM-SIRP-NAAIWGSLLSSCRTHG-----------HVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRW 452 (477)
Q Consensus 386 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 452 (477)
+++|+..|++. .+.| +..+|..++.+|...| ++++|.+.|+++++++|.+...+..|...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------
Confidence 34455555554 2333 3345555555554432 46889999999999999987766666655
Q ss_pred hHHHHHHHHHHhCCC
Q 042503 453 DDAETLRMWMRENNV 467 (477)
Q Consensus 453 ~~A~~~~~~~~~~~~ 467 (477)
.+|.+++.+..+.|+
T Consensus 130 ~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 466777777776664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.09 E-value=1.2e-05 Score=60.49 Aligned_cols=89 Identities=15% Similarity=-0.043 Sum_probs=64.1
Q ss_pred HHHHHhcCCHHHHHHHHHhc----CCCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------
Q 042503 377 VDVLGRSGCVREAYDLIRSM----SIRPN----------AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN------- 435 (477)
Q Consensus 377 ~~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------- 435 (477)
...+.+.|++++|+..|++. ...|+ ...|+.+..+|...|++++|...+++++++.|..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33455667777777776666 11121 3567788888889999999998888887654311
Q ss_pred ----CchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 436 ----SGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 436 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
..++..++.+|...|++++|...+++.++.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 225778899999999999999999988764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.01 E-value=9e-06 Score=66.73 Aligned_cols=129 Identities=9% Similarity=-0.041 Sum_probs=91.1
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHH
Q 042503 309 LAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVRE 388 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 388 (477)
..+.|++++|+..+++.++.. |.|...+..+...++..|++++|...|+...+.. +.+...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHH
Confidence 346789999999999998886 7788899999999999999999999999988432 2334455555555555555554
Q ss_pred HHHHHHhc--CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHH
Q 042503 389 AYDLIRSM--SIRPN-AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYV 440 (477)
Q Consensus 389 A~~~~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 440 (477)
+..-.... ...|+ ...+...+..+...|+.++|.+.++++.+..|..+..++
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 44333332 11232 234445566678889999999999999999888766544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.91 E-value=6.2e-06 Score=61.01 Aligned_cols=85 Identities=11% Similarity=-0.013 Sum_probs=59.3
Q ss_pred hcCCHHHHHHHHHhc-CC-CCCHHHHHHHHHHHHH----------cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhc
Q 042503 382 RSGCVREAYDLIRSM-SI-RPNAAIWGSLLSSCRT----------HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEG 449 (477)
Q Consensus 382 ~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 449 (477)
+.+.+++|++.|+.. .. +.++..+..++.++.. .+.+++|+..++++++++|.++.+|..++.+|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 334455555555555 22 2233455555554442 34567899999999999999999999999999876
Q ss_pred CC-----------chHHHHHHHHHHhCC
Q 042503 450 GR-----------WDDAETLRMWMRENN 466 (477)
Q Consensus 450 g~-----------~~~A~~~~~~~~~~~ 466 (477)
|+ +++|.+.|++.++..
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 54 688888888887653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.87 E-value=7.8e-05 Score=55.78 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=66.8
Q ss_pred HHHhhccccHHHHHHHHHHhhhccCCCCC----------hHHHHHHHHHHHhcCCHHHHHHHHHhc--------CCCCC-
Q 042503 341 LTCCAHAGLVEKARELFASMTGLHSIVPN----------LEHYGCMVDVLGRSGCVREAYDLIRSM--------SIRPN- 401 (477)
Q Consensus 341 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~- 401 (477)
...+...|++++|+..|++..+...-.|+ ..+|+.+..+|...|++++|...+++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 44455667777777777777642222222 346777888888888888888777775 12222
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q 042503 402 ----AAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN 435 (477)
Q Consensus 402 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 435 (477)
...+..++.+|...|++++|+..|++++++.|..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 2356778899999999999999999999876543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=5e-05 Score=51.14 Aligned_cols=66 Identities=17% Similarity=-0.050 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 042503 401 NAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWN-------SGNYVLLSNIYAEGGRWDDAETLRMWMRENN 466 (477)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 466 (477)
+...+..++..+.+.|++++|+..++++++..|.+ ..++..++.+|.+.|++++|+..++++++..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 34455678899999999999999999999876543 3468899999999999999999999998864
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.02 Score=50.66 Aligned_cols=80 Identities=9% Similarity=-0.023 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHH
Q 042503 383 SGCVREAYDLIRSM-SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMW 461 (477)
Q Consensus 383 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 461 (477)
.+..+.+...+... ....+.....-.+......++...+...+..+.......+....-+++++...|+.++|..++..
T Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~ 344 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQ 344 (450)
T ss_dssp TTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence 34444444444443 21223332222333334445555555544443222222233344455555555555555555554
Q ss_pred H
Q 042503 462 M 462 (477)
Q Consensus 462 ~ 462 (477)
+
T Consensus 345 ~ 345 (450)
T d1qsaa1 345 L 345 (450)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.60 E-value=2e-05 Score=64.57 Aligned_cols=120 Identities=12% Similarity=0.070 Sum_probs=85.6
Q ss_pred hhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc-CCCCCH-HHHHHHHHHHHHcCChHHH
Q 042503 344 CAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM-SIRPNA-AIWGSLLSSCRTHGHVELA 421 (477)
Q Consensus 344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a 421 (477)
..+.|++++|+..+++..+. .|.+...+..+...|+..|++++|.+.|+.. ...|+. ..+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 45679999999999999843 3677899999999999999999999999999 666654 4555555544444333333
Q ss_pred HHHHHHHHhc-CCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 422 EHAVKELINL-EPWNSGNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 422 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.......... .|++...+...+..+.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2222111111 2333445556677788999999999999998775
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.58 E-value=0.00072 Score=51.42 Aligned_cols=59 Identities=10% Similarity=-0.006 Sum_probs=34.7
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 042503 336 TFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM 396 (477)
Q Consensus 336 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 396 (477)
.+..+..++...|++++|+..++++.+.. +-+...|..++.+|.+.|+..+|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34455556666666666666666665322 445556666666666666666666666553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.10 E-value=0.0092 Score=40.56 Aligned_cols=141 Identities=11% Similarity=0.074 Sum_probs=102.9
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHhcCCHHH
Q 042503 309 LAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGRSGCVRE 388 (477)
Q Consensus 309 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 388 (477)
+.-.|..++..+++.+..... +..-||+++--....-+-+...++++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 445678888888888877643 56667777766667777777777777776433222 2333343
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 042503 389 AYDLIRSMSIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSNIYAEGGRWDDAETLRMWMRENNVK 468 (477)
Q Consensus 389 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 468 (477)
...-+-.+ ..+...++..+.....+|.-+.-.++++.+.+.+..+|.....++.+|.+.|...++.+++.+.-+.|++
T Consensus 75 vv~C~~~~--n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVIN--NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHT--TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHh--cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33333333 2345566777888899999999999999988887778999999999999999999999999999999875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.95 E-value=0.0092 Score=42.49 Aligned_cols=84 Identities=6% Similarity=-0.105 Sum_probs=52.4
Q ss_pred cCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCCchHHHHHHHHHh----cCCchH
Q 042503 383 SGCVREAYDLIRSMSIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEPWNSGNYVLLSNIYAE----GGRWDD 454 (477)
Q Consensus 383 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~ 454 (477)
..+.++|++++++....-++.....|...|.. ..|.++|.+.|+++.+.+ ++.+...|+..|.. ..+.++
T Consensus 36 ~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~ 113 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQ 113 (133)
T ss_dssp TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHH
Confidence 34566666666665222344445555555543 346777778887777655 35667777777765 356777
Q ss_pred HHHHHHHHHhCCCc
Q 042503 455 AETLRMWMRENNVK 468 (477)
Q Consensus 455 A~~~~~~~~~~~~~ 468 (477)
|.+++++..+.|.+
T Consensus 114 A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 114 AVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHCCCH
Confidence 88888877777643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.63 E-value=0.0035 Score=43.20 Aligned_cols=71 Identities=15% Similarity=0.059 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHHHhcC---CHHHHHHHHHhc-CCCC-CH-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCch
Q 042503 368 PNLEHYGCMVDVLGRSG---CVREAYDLIRSM-SIRP-NA-AIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGN 438 (477)
Q Consensus 368 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 438 (477)
|+..+--.+.-++++.. +.++++.+|++. ...| +. ..+..+..+|.+.|++++|.+.++++++++|.+..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 44444444444555443 445666666666 2223 32 455566666777777777777777777777765543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.35 E-value=0.049 Score=38.49 Aligned_cols=111 Identities=7% Similarity=-0.082 Sum_probs=77.9
Q ss_pred CchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHHHHHh----cCCHHHH
Q 042503 314 RGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVDVLGR----SGCVREA 389 (477)
Q Consensus 314 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 389 (477)
++++|+.+|++..+.|. +.. ...+. .....+.++|...+++..+ .| ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~-~~a--~~~l~--~~~~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-MFG--CLSLV--SNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-TTH--HHHHH--TCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCC-hhh--hhhhc--cccccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhHHH
Confidence 67788888988888773 222 22232 3445678899999998874 33 45556666666654 4578999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCC
Q 042503 390 YDLIRSMSIRPNAAIWGSLLSSCRT----HGHVELAEHAVKELINLEP 433 (477)
Q Consensus 390 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 433 (477)
.++|++.-..-++.....|...|.. ..|.++|.++|+++.+.+.
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999998223456666777777765 4689999999999988764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.35 Score=42.34 Aligned_cols=169 Identities=9% Similarity=-0.021 Sum_probs=96.1
Q ss_pred cCChHHHHHHhccCCC--CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHH
Q 042503 281 CGILDTARNVFKEIPR--KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFA 358 (477)
Q Consensus 281 ~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 358 (477)
.+..+.+...+..... .+.....-.+......+++..+...+..|.... .......-.+..++...|+.+.|...|.
T Consensus 265 ~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~ 343 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILH 343 (450)
T ss_dssp TTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHH
Confidence 3445555554443322 222222333444556678888888877764321 2234445567788888888888888888
Q ss_pred HhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhcCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q 042503 359 SMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSMSIRPNAA----IWGSLLSSCRTHGHVELAEHAVKELINLEPW 434 (477)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 434 (477)
.+.. .++ -|..|... +.|..-.. . .......+... .-..-+..+...|....|...+..+.+..
T Consensus 344 ~~a~----~~~--fYG~LAa~--~Lg~~~~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~-- 411 (450)
T d1qsaa1 344 QLMQ----QRG--FYPMVAAQ--RIGEEYEL-K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-- 411 (450)
T ss_dssp HHHT----SCS--HHHHHHHH--HTTCCCCC-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHhc----CCC--hHHHHHHH--HcCCCCCC-C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--
Confidence 8762 233 33333222 11210000 0 00000011110 01123456778999999999999887644
Q ss_pred CCchHHHHHHHHHhcCCchHHHHHHHHH
Q 042503 435 NSGNYVLLSNIYAEGGRWDDAETLRMWM 462 (477)
Q Consensus 435 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 462 (477)
++.-...++....+.|.++.|+....+.
T Consensus 412 ~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 412 SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 4667778889999999999999776654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.87 E-value=0.032 Score=38.31 Aligned_cols=67 Identities=7% Similarity=-0.089 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCCC-chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 042503 399 RPNAAIWGSLLSSCRTHG---HVELAEHAVKELINLEPWNS-GNYVLLSNIYAEGGRWDDAETLRMWMREN 465 (477)
Q Consensus 399 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 465 (477)
.|...+-....+++.++. +.++++.+++++.+.+|.+. +.+..|+.+|.+.|++++|.++++.+++.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 455666666777777654 44577777887777777553 57777888888888888888888777764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.25 E-value=0.24 Score=33.53 Aligned_cols=136 Identities=15% Similarity=0.093 Sum_probs=88.7
Q ss_pred HHhcCChHHHHHHhccCCC-CCceeHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHH
Q 042503 278 YCKCGILDTARNVFKEIPR-KNVVSWNAMISGLAFNGRGELGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKAREL 356 (477)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 356 (477)
+.-.|..++..+++.+... .+..-||-++--....-+-+-....++..-+ -.| ....++.......
T Consensus 12 ~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~---~FD----------ls~C~Nlk~vv~C 78 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVEC 78 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhh---hcC----------chhhhcHHHHHHH
Confidence 4456788888888777655 3444455555444444444444444444322 111 1233445555444
Q ss_pred HHHhhhccCCCCChHHHHHHHHHHHhcCCHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q 042503 357 FASMTGLHSIVPNLEHYGCMVDVLGRSGCVREAYDLIRSM--SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLE 432 (477)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 432 (477)
+-.+- .+...+..-++.+..+|+-+.-.++++++ .-+|+++....+..+|.+.|+..++-+++.++-+.+
T Consensus 79 ~~~~n------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 79 GVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 43332 34455666778888999999999998885 568889999999999999999999999999887655
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.41 E-value=0.78 Score=29.32 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhccccHHHHHHHHHHhhhccCCCCChHHHHHHHH
Q 042503 317 LGVELYEQMIAKGVSPNKATFVGVLTCCAHAGLVEKARELFASMTGLHSIVPNLEHYGCMVD 378 (477)
Q Consensus 317 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 378 (477)
++.+-+..+....+.|++....+.+++|.+.+++..|.++|+.++.+.+ ++...|..+++
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4556666677777889999999999999999999999999998885443 33446655543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.51 E-value=3.8 Score=26.06 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCCchHHHHHH
Q 042503 385 CVREAYDLIRSM---SIRPNAAIWGSLLSSCRTHGHVELAEHAVKELINLEPWNSGNYVLLSN 444 (477)
Q Consensus 385 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 444 (477)
+.-+..+-++.+ ..-|++.+..+.+++|.+.+|+..|.++++-.......+...|-.++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334455555555 668999999999999999999999999999887655334556655443
|