Citrus Sinensis ID: 042521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MNGALNMLGMNALHFSPHPRTGFLDNGAVSGKNKRSPRAVSVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mngalnmlgmnalhfsphprtgfldngavsgknkrspravsvempvtapgtggslyEVLRVEPTATISEIKTAYRSLAKvyhpdlsgngrdFIEIHNayetlsdptaraVYDMslvgrrrttrtasfgcsggsgfhptrrwetdqcw
Flexible Loop (DISEMBL)
MNGALNMLGMNALHFSPHPRTGFLDNGAVSGKnkrspravsvempvtapgtggslyevLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAyetlsdptaraVYDMSLVGrrrttrtasfgcsggsgfhptrrwetdqcw
Low Complexity Region (SEG)
MNGALNMLGMNALHFSPHPRTGFLDNGAVSGKNKRSPRAVSVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW
Disordered region (IsUnstruct)
***************************************************GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRRTTRTASFGC******************
Disordered Region (DISOPRED)
****************************************************GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLV**********************RRWETDQCW
Disordered Region (DISEMBL)
MNGALNMLGMNALHFSPHPRTGFLDNGAV***********SVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW
Disordered Region (DISPRO)
***************************************************GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVG******************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNGALNMLGMNALHFSPHPRTGFLDNGAVSGKNKRSPRAVSVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q9FYB5	161	Chaperone protein dnaJ 11	no	no	0.687	0.627	0.437	4e-17
Q50312	309	DnaJ-like protein MG002 h	yes	no	0.421	0.200	0.539	2e-12
Q8RB67	384	Chaperone protein DnaJ OS	yes	no	0.408	0.156	0.531	3e-11
P47248	310	DnaJ-like protein MG002 O	yes	no	0.523	0.248	0.435	3e-11
Q71ZJ8	376	Chaperone protein DnaJ OS	yes	no	0.394	0.154	0.540	9e-11
C1KVB9	376	Chaperone protein DnaJ OS	yes	no	0.394	0.154	0.540	9e-11
P0DJM1	377	Chaperone protein DnaJ OS	yes	no	0.394	0.153	0.524	1e-10
B8DE39	376	Chaperone protein DnaJ OS	yes	no	0.394	0.154	0.524	1e-10
G2K045	377	Chaperone protein DnaJ OS	yes	no	0.394	0.153	0.524	1e-10
Q92BN9	376	Chaperone protein DnaJ OS	yes	no	0.394	0.154	0.524	1e-10

>sp|Q9FYB5|DNJ11_ARATH Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 11/112 (9%)

Query: 43  EMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGR-------DFIEI 95
           ++P        SLY+VL V   AT  +IK+AYR LA++ HPD++G  R       +F++I
Sbjct: 54  QIPRRLTTVPASLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKI 113

Query: 96  HNAYETLSDPTARAVYDMSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW 147
           H AY TLSDP  R+VYD  ++ R   +R  + G SG  G +  R WETDQCW
Sbjct: 114 HAAYCTLSDPEKRSVYDRRMLRR---SRPLTVGTSGL-GSYVGRNWETDQCW 161

Have a continuous role in plant development probably in the structural organization of compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q50312|DNAJL_MYCPN DnaJ-like protein MG002 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_002 PE=4 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD-FIEIHNAYETLSDPTARAVYD 112
           +LY++L +  TAT+ EIKTAY+ LAK YHPD++  G D F++I+NAY  LSD T +A YD
Sbjct: 2   TLYDLLELPQTATLQEIKTAYKRLAKRYHPDINKQGADTFVKINNAYAVLSDTTQKAEYD 61

Query: 113 MSL 115
             L
Sbjct: 62  AML 64

Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634)

>sp|Q8RB67|DNAJ_THETN Chaperone protein DnaJ OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dnaJ PE=3 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 4/64 (6%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARA 109
            LYE+L V+  A+  EIK AYR LAK YHPDL+   ++    F EI+ AYE LSDP  RA
Sbjct: 5   DLYEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 64

Query: 110 VYDM 113
            YD 
Sbjct: 65  QYDQ 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

>sp|P47248|DNAJL_MYCGE DnaJ-like protein MG002 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG002 PE=4 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-RDFIEIHNAYETLSDPTARAVYD 112
           +LY++L +  TA+I EIK AY+ LAK YHPD++  G + F+EI+NAY  LSDP  +  YD
Sbjct: 2   NLYDLLELPTTASIKEIKIAYKRLAKRYHPDVNKLGSQTFVEINNAYSILSDPNQKEKYD 61

Query: 113 MSLVGRRRTTRTASFGCS 130
             L       R  +   S
Sbjct: 62  SMLKVNDFQNRIKNLDIS 79

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

>sp|Q71ZJ8|DNAJ_LISMF Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dnaJ PE=3 SV=1

 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDL---SGNGRDFIEIHNAYETLSDPTARAVYD 112
           YEVL V  +A+  EIK AYR L+K YHPD+   +G    F EI  AYE LSDP  RA YD
Sbjct: 7   YEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Query: 113 M 113
            
Sbjct: 67  Q 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|C1KVB9|DNAJ_LISMC Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=dnaJ PE=3 SV=1

 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDL---SGNGRDFIEIHNAYETLSDPTARAVYD 112
           YEVL V  +A+  EIK AYR L+K YHPD+   +G    F EI  AYE LSDP  RA YD
Sbjct: 7   YEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Query: 113 M 113
            
Sbjct: 67  Q 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain Clip81459) (taxid: 568819)

>sp|P0DJM1|DNAJ_LISMO Chaperone protein DnaJ OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDL---SGNGRDFIEIHNAYETLSDPTARAVYD 112
           YEVL +  +A+  EIK AYR L+K YHPD+   +G    F EI  AYE LSDP  RA YD
Sbjct: 7   YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Query: 113 M 113
            
Sbjct: 67  Q 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|B8DE39|DNAJ_LISMH Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDL---SGNGRDFIEIHNAYETLSDPTARAVYD 112
           YEVL +  +A+  EIK AYR L+K YHPD+   +G    F EI  AYE LSDP  RA YD
Sbjct: 7   YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Query: 113 M 113
            
Sbjct: 67  Q 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4a (strain HCC23) (taxid: 552536)

>sp|G2K045|DNAJ_LISM4 Chaperone protein DnaJ OS=Listeria monocytogenes serotype 1/2a (strain 10403S) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDL---SGNGRDFIEIHNAYETLSDPTARAVYD 112
           YEVL +  +A+  EIK AYR L+K YHPD+   +G    F EI  AYE LSDP  RA YD
Sbjct: 7   YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Query: 113 M 113
            
Sbjct: 67  Q 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 1/2a (strain 10403S) (taxid: 393133)

>sp|Q92BN9|DNAJ_LISIN Chaperone protein DnaJ OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=dnaJ PE=3 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 38/61 (62%), Gaps = 3/61 (4%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDL---SGNGRDFIEIHNAYETLSDPTARAVYD 112
           YEVL +  +A+  EIK AYR L+K YHPD+   +G    F EI  AYE LSDP  RA YD
Sbjct: 7   YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Query: 113 M 113
            
Sbjct: 67  Q 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria innocua serovar 6a (strain CLIP 11262) (taxid: 272626)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
225462060	148	PREDICTED: chaperone protein dnaJ 11, ch	0.850	0.844	0.539	3e-28
255579560	168	chaperone protein DNAj, putative [Ricinu	0.619	0.541	0.63	1e-27
224061637	99	predicted protein [Populus trichocarpa]	0.625	0.929	0.653	3e-27
357460317	161	Chaperone protein dnaJ [Medicago truncat	0.986	0.900	0.466	1e-26
356552398	142	PREDICTED: chaperone protein dnaJ 11, ch	0.802	0.830	0.507	2e-25
297834156	157	DNAJ heat shock N-terminal domain-contai	0.632	0.592	0.621	3e-25
15231204	157	chaperone DnaJ-domain containing protein	0.632	0.592	0.621	6e-25
224122088	171	predicted protein [Populus trichocarpa]	0.625	0.538	0.590	7e-25
118487648	171	unknown [Populus trichocarpa]	0.625	0.538	0.590	8e-25
356566293	151	PREDICTED: chaperone protein dnaJ 11, ch	0.755	0.735	0.531	1e-23

>gi|225462060|ref|XP_002275924.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic [Vitis vinifera] gi|296090000|emb|CBI39819.3| unnamed protein product [Vitis vinifera]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/139 (53%), Positives = 89/139 (64%), Gaps = 14/139 (10%)

Query: 19  PRTGFLDNGAVSGKNKRSPRAVSVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLA 78
           P   F    A S    R+P   S++  V A     SLYEVLRV+ TA+ +EIKTAYRSLA
Sbjct: 14  PPIHFRAGSAPSMSCSRNPCHASMQTLVEATRKPSSLYEVLRVKQTASPTEIKTAYRSLA 73

Query: 79  KVYHPDLS---GNGRDFIEIHNAYETLSDPTARAVYDMSL--VGRRRTTRTASFGCSGG- 132
           K+YHPD S    +GR+FI+IHNAYETLSDP ARAVYD+SL   GR    R  ++ CS G 
Sbjct: 74  KMYHPDASPVDSDGRNFIQIHNAYETLSDPAARAVYDLSLGSTGR----RPYAYACSSGG 129

Query: 133 ----SGFHPTRRWETDQCW 147
               S  + TRRWETDQCW
Sbjct: 130 VRGRSAHYSTRRWETDQCW 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579560|ref|XP_002530622.1| chaperone protein DNAj, putative [Ricinus communis] gi|223529832|gb|EEF31765.1| chaperone protein DNAj, putative [Ricinus communis]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/100 (63%), Positives = 77/100 (77%), Gaps = 9/100 (9%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPD------LSGNGRDFIEIHNAYETLSDPTA 107
           SLYE+LR++ TA++ EIKTAYRSLAK+YHPD      +  +GRDF+EIHNAYETLSDP A
Sbjct: 72  SLYEILRIKRTASLMEIKTAYRSLAKLYHPDAAVREDVETDGRDFMEIHNAYETLSDPAA 131

Query: 108 RAVYDMSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW 147
           RA+YD+SL    R  R A  G +G  G++PTRRWETDQCW
Sbjct: 132 RALYDLSLDAASRRRRPA-VGFTG--GYYPTRRWETDQCW 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061637|ref|XP_002300579.1| predicted protein [Populus trichocarpa] gi|222847837|gb|EEE85384.1| predicted protein [Populus trichocarpa]

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 71/101 (70%), Gaps = 9/101 (8%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS-------GNGRDFIEIHNAYETLSDPT 106
           SLYE+LRV PTA+  EIKTAYRSLAKVYHPD           G DFIEIHNAYETLSDP 
Sbjct: 1   SLYEILRVNPTASQVEIKTAYRSLAKVYHPDAMLDRDDEPSEGVDFIEIHNAYETLSDPA 60

Query: 107 ARAVYDMSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW 147
           ARAVYDMSL    R     + G SG  G++ TRRWETDQCW
Sbjct: 61  ARAVYDMSLSAAARDFYRRAVGYSG--GYYTTRRWETDQCW 99

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460317|ref|XP_003600440.1| Chaperone protein dnaJ [Medicago truncatula] gi|358349362|ref|XP_003638707.1| Chaperone protein dnaJ [Medicago truncatula] gi|355489488|gb|AES70691.1| Chaperone protein dnaJ [Medicago truncatula] gi|355504642|gb|AES85845.1| Chaperone protein dnaJ [Medicago truncatula] gi|388517361|gb|AFK46742.1| unknown [Medicago truncatula]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 96/163 (58%), Gaps = 18/163 (11%)

Query: 1   MNGALNMLGMNA---LHFSPHPRTG--FLDNGAVSGKNKR--SPRAVSVEMPVTAPGTGG 53
           M   L++ G++    L FS    T   F+   + +  N+R  S RAV+  +    P T  
Sbjct: 1   MTATLSLAGISVVRPLRFSDDCSTSARFIAKPSSNISNRRRISIRAVTAAVETRRPAT-- 58

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSG------NGRDFIEIHNAYETLSDPTA 107
           SLYEVLR+ P A+  EIK+AYRSLAKVYHPD +       N  DFIEI NAYETLSDP++
Sbjct: 59  SLYEVLRLNPGASAMEIKSAYRSLAKVYHPDAAARRLQECNDGDFIEIRNAYETLSDPSS 118

Query: 108 RAVYDMSLV---GRRRTTRTASFGCSGGSGFHPTRRWETDQCW 147
           R +YD+SL+   GR R    A       SGF+  RRWETDQCW
Sbjct: 119 RQIYDLSLMVHGGRNRRFTAAPVMQKRNSGFYTNRRWETDQCW 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552398|ref|XP_003544555.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Glycine max]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/130 (50%), Positives = 87/130 (66%), Gaps = 12/130 (9%)

Query: 30  SGKNKRSPRAVSVE-MPVTAPGT--GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS 86
           +G+  R P  +S+     TA  +    SLYEVLR++  A+  EIK+AYR+LAKVYHPD +
Sbjct: 13  AGRTLRPPFRISIRAFTATAIDSRRAASLYEVLRIKQNASAVEIKSAYRNLAKVYHPDSA 72

Query: 87  -----GNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRRTTRTAS---FGCSGGSGF-HP 137
                 + RDFIEIH+AYETLSDP+ARA+YD+SL+  R   R+ S      +G SGF + 
Sbjct: 73  LRRSESDERDFIEIHDAYETLSDPSARALYDLSLMAARDDNRSFSSLVAAPNGSSGFYYQ 132

Query: 138 TRRWETDQCW 147
           TR+WETDQCW
Sbjct: 133 TRKWETDQCW 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834156|ref|XP_002884960.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330800|gb|EFH61219.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 71/95 (74%), Gaps = 2/95 (2%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS-GNGRDFIEIHNAYETLSDPTARAVYD 112
           SLYE+L+V  TA+++EIKTAYRSLAKVYHPD S  +GRDF+EIH AY TL+DPT RA+YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 113 MSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW 147
            +L   RR     + G S G  +  TRRWETDQCW
Sbjct: 124 STLRAPRRRVHAGAMGRS-GRVYTTTRRWETDQCW 157

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231204|ref|NP_187939.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|9294537|dbj|BAB02800.1| DnaJ-like protein [Arabidopsis thaliana] gi|21592683|gb|AAM64632.1| DnaJ protein, putative [Arabidopsis thaliana] gi|32815917|gb|AAP88343.1| At3g13310 [Arabidopsis thaliana] gi|332641811|gb|AEE75332.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score =  119 bits (297), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 59/95 (62%), Positives = 71/95 (74%), Gaps = 2/95 (2%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS-GNGRDFIEIHNAYETLSDPTARAVYD 112
           SLYE+L+V  TA+++EIKTAYRSLAKVYHPD S  +GRDF+EIH AY TL+DPT RA+YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 113 MSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW 147
            +L   RR     + G S G  +  TRRWETDQCW
Sbjct: 124 STLRVPRRRVHAGAMGRS-GRVYATTRRWETDQCW 157

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122088|ref|XP_002330538.1| predicted protein [Populus trichocarpa] gi|222872096|gb|EEF09227.1| predicted protein [Populus trichocarpa]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 71/105 (67%), Gaps = 13/105 (12%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDL-----------SGNGRDFIEIHNAYETL 102
           SLY+VLRV P A+  EIK+AYRSLAK+YHPD              +G DFIEIH+AYETL
Sbjct: 69  SLYDVLRVNPAASQVEIKSAYRSLAKIYHPDAFLSHDRDHDDEQSDGGDFIEIHSAYETL 128

Query: 103 SDPTARAVYDMSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW 147
           SDPTARAVYD+SL    R     + G SGG   + TRRWETDQCW
Sbjct: 129 SDPTARAVYDLSLSAAARCFYRRAAGYSGGD--YTTRRWETDQCW 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487648|gb|ABK95649.1| unknown [Populus trichocarpa]

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 71/105 (67%), Gaps = 13/105 (12%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDL-----------SGNGRDFIEIHNAYETL 102
           SLY+VLRV P A+  EIK+AYRSLAK+YHPD              +G DFIEIH+AYETL
Sbjct: 69  SLYDVLRVNPAASQVEIKSAYRSLAKIYHPDAFLSHDRDHDDEQSDGGDFIEIHSAYETL 128

Query: 103 SDPTARAVYDMSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW 147
           SDPTARAVYD+SL    R     + G SGG   + TRRWETDQCW
Sbjct: 129 SDPTARAVYDLSLSAAARCFYRRAAGYSGGD--YTTRRWETDQCW 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566293|ref|XP_003551367.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Glycine max]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/126 (53%), Positives = 82/126 (65%), Gaps = 15/126 (11%)

Query: 34  KRSPRAVSVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS------- 86
           + S RAV+ E  V       SLYEVLRVE  A+ +EIK+AYRSLAK+YHPD +       
Sbjct: 29  RSSVRAVAAEA-VDTQRPAASLYEVLRVERDASPTEIKSAYRSLAKLYHPDAAVQRSPET 87

Query: 87  -GNGRDFIEIHNAYETLSDPTARAVYDMSLV----GRRRTTRTASFGCSGGSGFHPTRRW 141
            G+G DFI++ NAYETLSDP+ARA+YD +L     GR R   T S   +  S F+ TRRW
Sbjct: 88  DGDG-DFIQLRNAYETLSDPSARAMYDRTLAAAHGGRHRRFST-SLSRNHSSAFYTTRRW 145

Query: 142 ETDQCW 147
           ETDQCW
Sbjct: 146 ETDQCW 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2088100	157	AT3G13310 [Arabidopsis thalian	0.768	0.719	0.547	9.4e-27
TAIR|locus:2827820	160	AT2G17880 "AT2G17880" [Arabido	0.591	0.543	0.5	2.8e-18
TAIR|locus:2135159	161	J11 "AT4G36040" [Arabidopsis t	0.857	0.782	0.402	4.6e-18
GENEDB_PFALCIPARUM|PF11_0099	540	PF11_0099 "heat shock protein	0.421	0.114	0.555	3.8e-11
UNIPROTKB|Q8IIR6	540	PF11_0099 "Heat shock protein	0.421	0.114	0.555	3.8e-11
UNIPROTKB|Q74B05	313	GSU2406 "DnaJ domain protein"	0.537	0.252	0.441	5.1e-11
TIGR_CMR|GSU_2406	313	GSU_2406 "dnaJ domain protein"	0.537	0.252	0.441	5.1e-11
TIGR_CMR|CHY_0416	381	CHY_0416 "chaperone protein dn	0.387	0.149	0.524	8.4e-11
FB|FBgn0032474	389	DnaJ-H "DnaJ homolog" [Drosoph	0.401	0.151	0.566	1.2e-10
TAIR|locus:2041258	442	AT2G22360 [Arabidopsis thalian	0.795	0.264	0.377	1.9e-10

TAIR|locus:2088100 AT3G13310 [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 64/117 (54%), Positives = 79/117 (67%)

Query:    34 KRSPRAVSVEMPVTAPGTG--GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS-GNGR 90
             K S + ++ E  VT        SLYE+L+V  TA+++EIKTAYRSLAKVYHPD S  +GR
Sbjct:    42 KASAQTLNAEPAVTESVRRRVSSLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGR 101

Query:    91 DFIEIHNAYETLSDPTARAVYDMSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW 147
             DF+EIH AY TL+DPT RA+YD +L   RR     + G SG   +  TRRWETDQCW
Sbjct:   102 DFMEIHKAYATLADPTTRAIYDSTLRVPRRRVHAGAMGRSGRV-YATTRRWETDQCW 157

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2827820 AT2G17880 "AT2G17880" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 50/100 (50%), Positives = 62/100 (62%)

Query:    54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD------FIEIHNAYETLSDPTA 107
             SLYE+L +   +T  EIK+AYR LA++ HPD++ N RD      F++IH AY TLSDP  
Sbjct:    68 SLYEILEIPVGSTSQEIKSAYRRLARICHPDVARNSRDNSSADDFMKIHAAYCTLSDPEK 127

Query:   108 RAVYDMSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW 147
             RAVYD   + R R   TA +G  GG      R WETDQCW
Sbjct:   128 RAVYDRRTLLRSRPL-TAGYGSYGG------RNWETDQCW 160

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2135159 J11 "AT4G36040" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 58/144 (40%), Positives = 78/144 (54%)

Query:    16 SPHPRTGFLDNGAVSGK-----NKRSPRAVSVEMPVTAPGTGGSLYEVLRVEPTATISEI 70
             SP  RT  +    VS        + SPR   +   +T      SLY+VL V   AT  +I
Sbjct:    24 SPPSRTARISPPLVSASCSYTYTEDSPRLHQIPRRLTT--VPASLYDVLEVPLGATSQDI 81

Query:    71 KTAYRSLAKVYHPDLSGNGR-------DFIEIHNAYETLSDPTARAVYDMSLVGRRRTTR 123
             K+AYR LA++ HPD++G  R       +F++IH AY TLSDP  R+VYD  ++   R +R
Sbjct:    82 KSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPEKRSVYDRRML---RRSR 138

Query:   124 TASFGCSGGSGFHPTRRWETDQCW 147
               + G SG  G +  R WETDQCW
Sbjct:   139 PLTVGTSG-LGSYVGRNWETDQCW 161

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GENEDB_PFALCIPARUM|PF11_0099 PF11_0099 "heat shock protein DnaJ homologue Pfj2" [Plasmodium falciparum (taxid:5833)]

 Score = 163 (62.4 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 35/63 (55%), Positives = 43/63 (68%)

Query:    52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-RDFIEIHNAYETLSDPTARAV 110
             G   Y+ L V+  AT  +I  AYR LAK YHPD++ +  +DFIEI NAYETLSDP  R +
Sbjct:    33 GMDYYKRLGVKRNATKEDISKAYRQLAKEYHPDIAPDKEKDFIEIANAYETLSDPEKRKM 92

Query:   111 YDM 113
             YDM
Sbjct:    93 YDM 95

GO:0009408 "response to heat" evidence=ISS

GO:0020011 "apicoplast" evidence=ISS

UNIPROTKB|Q8IIR6 PF11_0099 "Heat shock protein DnaJ homologue Pfj2" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 163 (62.4 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 35/63 (55%), Positives = 43/63 (68%)

Query:    52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-RDFIEIHNAYETLSDPTARAV 110
             G   Y+ L V+  AT  +I  AYR LAK YHPD++ +  +DFIEI NAYETLSDP  R +
Sbjct:    33 GMDYYKRLGVKRNATKEDISKAYRQLAKEYHPDIAPDKEKDFIEIANAYETLSDPEKRKM 92

Query:   111 YDM 113
             YDM
Sbjct:    93 YDM 95

GO:0009408 "response to heat" evidence=ISS

GO:0020011 "apicoplast" evidence=ISS

UNIPROTKB|Q74B05 GSU2406 "DnaJ domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 157 (60.3 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 38/86 (44%), Positives = 51/86 (59%)

Query:    56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLS--GNGRD-FIEIHNAYETLSDPTARAVYD 112
             Y +L V  TAT  E++ AYR LA+ YHPD++  G+  + F +I+ AYE LSDP  RA YD
Sbjct:     8 YAILGVSKTATQEEVQRAYRKLARKYHPDINKAGDAEEKFKQINEAYEVLSDPDKRATYD 67

Query:   113 MSLVGRRRTTRTASFGCSGG--SGFH 136
                +GR    R  + G  GG  +G H
Sbjct:    68 Q--LGRDWDGRHGTQGYQGGDNAGHH 91

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2406 GSU_2406 "dnaJ domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 157 (60.3 bits), Expect = 5.1e-11, P = 5.1e-11
 Identities = 38/86 (44%), Positives = 51/86 (59%)

Query:    56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLS--GNGRD-FIEIHNAYETLSDPTARAVYD 112
             Y +L V  TAT  E++ AYR LA+ YHPD++  G+  + F +I+ AYE LSDP  RA YD
Sbjct:     8 YAILGVSKTATQEEVQRAYRKLARKYHPDINKAGDAEEKFKQINEAYEVLSDPDKRATYD 67

Query:   113 MSLVGRRRTTRTASFGCSGG--SGFH 136
                +GR    R  + G  GG  +G H
Sbjct:    68 Q--LGRDWDGRHGTQGYQGGDNAGHH 91

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0416 CHY_0416 "chaperone protein dnaJ" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 141 (54.7 bits), Expect = 8.4e-11, Sum P(2) = 8.4e-11
 Identities = 32/61 (52%), Positives = 38/61 (62%)

Query:    56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVY 111
             YE+L V   AT  EIK AYR LA+ YHPD++ +       F EI+ AYE LSDP  RA Y
Sbjct:     6 YEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRARY 65

Query:   112 D 112
             D
Sbjct:    66 D 66

GO:0006457 "protein folding" evidence=ISS

GO:0009408 "response to heat" evidence=ISS

FB|FBgn0032474 DnaJ-H "DnaJ homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 156 (60.0 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 34/60 (56%), Positives = 40/60 (66%)

Query:    54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD-FIEIHNAYETLSDPTARAVYD 112
             +LY+VLRV P AT  EIK  YR LAK +HPD + +  D F EI  AYE LSDP  R +YD
Sbjct:     5 NLYDVLRVAPDATDEEIKKNYRKLAKEFHPDKNPDAGDKFKEISFAYEVLSDPEKRRIYD 64

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2041258 AT2G22360 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 48/127 (37%), Positives = 60/127 (47%)

Query:     5 LNMLGMNALHFSPHPRTGFLDNGAVSGKNKRSPRAVSVEMPVTAPGTGGSLYEVLRVEPT 64
             +N LG +      H    FL    +S +N   PR  S    V A       Y VL V   
Sbjct:    42 VNCLGASKSSMFSHGSLPFLSMTGMS-RNMHPPRRGS-RFTVRADA---DYYSVLGVSKN 96

Query:    65 ATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRRT 121
             AT +EIK+AYR LA+ YHPD++   G    F EI NAYE LSD   +++YD    G    
Sbjct:    97 ATKAEIKSAYRKLARNYHPDVNKDPGAEEKFKEISNAYEVLSDDEKKSLYDR--YGEAGL 154

Query:   122 TRTASFG 128
                A FG
Sbjct:   155 KGAAGFG 161

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
pfam00226	63	pfam00226, DnaJ, DnaJ domain	3e-24
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	7e-20
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	1e-19
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	3e-18
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-17
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	6e-16
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	5e-15
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	9e-15
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	9e-15
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-14
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	3e-14
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	4e-14
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	3e-13
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	4e-13
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	4e-13
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	7e-13
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	1e-12
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	1e-12
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	3e-12
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	5e-12
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	6e-12
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	7e-12
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	1e-11
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	3e-11
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	4e-11
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	1e-10
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	2e-10
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	3e-10
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	4e-10
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	1e-09
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	1e-09
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	1e-09
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	2e-09
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	7e-09
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	3e-08
TIGR00714	155	TIGR00714, hscB, Fe-S protein assembly co-chaperon	8e-08
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	3e-07
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	4e-05
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	1e-04
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	2e-04
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	2e-04
COG1076	174	COG1076, DjlA, DnaJ-domain-containing proteins 1 [	3e-04
PRK05014	171	PRK05014, hscB, co-chaperone HscB; Provisional	7e-04
PHA03102	153	PHA03102, PHA03102, Small T antigen; Reviewed	0.001
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	0.002

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 88.4 bits (220), Expect = 3e-24
 Identities = 31/62 (50%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 55  LYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG----RDFIEIHNAYETLSDPTARAV 110
            YE+L V   A+  EIK AYR LA  YHPD +         F EI+ AYE LSDP  RA+
Sbjct: 2   YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRAI 61

Query: 111 YD 112
           YD
Sbjct: 62  YD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 83.8 bits (208), Expect = 7e-20
 Identities = 37/87 (42%), Positives = 41/87 (47%), Gaps = 12/87 (13%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS----GNGRDFIEIHNAYETLSDPTARA 109
             YE+L V   A+  EIK AYR LAK YHPD +         F EI+ AYE LSDP  RA
Sbjct: 5   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64

Query: 110 VYDMSLVGRRRTTRTASFGCSGGSGFH 136
            YD            A F   G  GF 
Sbjct: 65  AYDQFG--------HAGFKAGGFGGFG 83

Length = 371

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 76.5 bits (189), Expect = 1e-19
 Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-----RDFIEIHNAYETLSDPT 106
             YE+L V   A++ EIK AYR LA  YHPD +          F EI+ AYE LSDP 
Sbjct: 2   DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59

Length = 60

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 73.0 bits (180), Expect = 3e-18
 Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG----RDFIEIHNAYETLSD 104
           Y++L V P A+  EIK AYR LA  YHPD + +       F EI+ AYE LSD
Sbjct: 3   YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 37/84 (44%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTARAVYD 112
           YE+L V   A+  EIK AYR LAK YHPD +        F EI+ AYE LSDP  RA YD
Sbjct: 3   YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYD 62

Query: 113 MSLVGRRRTTRTASFGCSGGSGFH 136
               G          G  G +GF 
Sbjct: 63  Q--FGHAGFNGGGGGGGGGFNGFD 84

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 72.9 bits (179), Expect = 6e-16
 Identities = 32/58 (55%), Positives = 36/58 (62%)

Query: 55  LYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYD 112
           LYEVL +    T SEIK AYR LA  +HPD  G+   F EI  AYE LSDP  R +YD
Sbjct: 30  LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYD 87

Length = 421

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 70.2 bits (172), Expect = 5e-15
 Identities = 31/61 (50%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG---RDFIEIHNAYETLSDPTARAVYD 112
           YE+L V   AT  EIK AYR LA+ YHPD + N      F EI+ AY+ LSDP  R +YD
Sbjct: 6   YEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYD 65

Query: 113 M 113
            
Sbjct: 66  Q 66

Length = 382

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 69.4 bits (170), Expect = 9e-15
 Identities = 32/60 (53%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTARAVYD 112
           YEVL V  +A+  EIK AYR L+K YHPD++   G    F EI  AYE LSD   RA YD
Sbjct: 7   YEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYD 66

Length = 376

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 69.4 bits (170), Expect = 9e-15
 Identities = 35/62 (56%), Positives = 41/62 (66%), Gaps = 4/62 (6%)

Query: 55  LYEVLRVEPTATISEIKTAYRSLAKVYHPDLS-GNG---RDFIEIHNAYETLSDPTARAV 110
            YE+L V+  AT  EIK AYR LAK YHPDL+ G+    + F EI+ AYE LSDP  RA 
Sbjct: 7   YYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQ 66

Query: 111 YD 112
           YD
Sbjct: 67  YD 68

Length = 386

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 34/63 (53%), Positives = 35/63 (55%), Gaps = 8/63 (12%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD------FIEIHNAYETLSDPTARA 109
           YEVL V   A+  EIK AYR LA  YHPD   N  D      F EI  AYE LSDP  RA
Sbjct: 7   YEVLGVSRNASEDEIKKAYRKLAMKYHPD--RNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64

Query: 110 VYD 112
            YD
Sbjct: 65  AYD 67

Length = 371

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 68.2 bits (167), Expect = 3e-14
 Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 55  LYEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTARAVY 111
            Y+ L V   A+  EIK AYR L+K YHPD++   G    + E+  AYETLSDP  RA Y
Sbjct: 6   YYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAY 65

Query: 112 D 112
           D
Sbjct: 66  D 66

Length = 380

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 66.8 bits (162), Expect = 4e-14
 Identities = 32/67 (47%), Positives = 37/67 (55%), Gaps = 5/67 (7%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD-----FIEIHNAYETLSDPTAR 108
             YE+L V P A++ EIK AYR LA  YHPD +          F EI+ AYE LSDP  R
Sbjct: 7   DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERR 66

Query: 109 AVYDMSL 115
           A YD   
Sbjct: 67  AEYDKIG 73

Length = 237

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 65.0 bits (159), Expect = 3e-13
 Identities = 36/86 (41%), Positives = 44/86 (51%), Gaps = 13/86 (15%)

Query: 53  GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTARA 109
              YE+L V   A   E+K AYR LA+ YHPD++   G    F EI+ AYE LSDP  RA
Sbjct: 3   ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62

Query: 110 VYDMSLVGRRRTTRTASFGCSGGSGF 135
            YD          +    G SG +GF
Sbjct: 63  RYD----------QFGEAGVSGAAGF 78

Length = 374

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 65.0 bits (158), Expect = 4e-13
 Identities = 38/86 (44%), Positives = 48/86 (55%), Gaps = 14/86 (16%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS-GNGRD----FIEIHNAYETLSDPTARAV 110
           Y++L V+  A+  +IK A+R LAK +HPDL  GN  +    F EI  AYE LSDP  R  
Sbjct: 6   YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQ 65

Query: 111 YDMSLVGRRRTTRTASFGCSGGSGFH 136
           YD         T T  FG +GGS F+
Sbjct: 66  YD--------QTGTVDFG-AGGSNFN 82

Length = 365

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 64.5 bits (157), Expect = 4e-13
 Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG---RDFIEIHNAYETLSDPTARAVYD 112
           Y ++ V+PT  +  IKTAYR LA+ YHPD+S        F E+  A+E LSD   RA YD
Sbjct: 7   YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66

Length = 306

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 64.0 bits (156), Expect = 7e-13
 Identities = 37/86 (43%), Positives = 43/86 (50%), Gaps = 9/86 (10%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD-----FIEIHNAYETLSDPTARAV 110
           YE+L V   AT  EIK AY+ L K +HPD     R      F EI  AYE LSDP  RA+
Sbjct: 7   YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAM 66

Query: 111 YD-MSLVGRRRTTRTASFGCSGGSGF 135
           YD    VG +   +      SGG  F
Sbjct: 67  YDRFGYVGEQPPYQETE---SGGGFF 89

Length = 369

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 64.1 bits (155), Expect = 1e-12
 Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
           YEVL ++  A   EIK A+R LAK YHPD      D    F EI+ A + LS+P  RA Y
Sbjct: 5   YEVLGIDRDADEQEIKKAFRKLAKKYHPD-RNKAPDAASIFAEINEANDVLSNPKKRANY 63

Query: 112 D 112
           D
Sbjct: 64  D 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 63.3 bits (154), Expect = 1e-12
 Identities = 34/83 (40%), Positives = 41/83 (49%), Gaps = 11/83 (13%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDL-SGNG---RDFIEIHNAYETLSDPTARAVY 111
           Y +L V  TA+  EIK AYR LA  YHPD   G+    + F E+  AYE LSD   R  Y
Sbjct: 4   YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESY 63

Query: 112 DMSLVGRRRTTRTASFGCSGGSG 134
           D       R  +   F  +GG G
Sbjct: 64  D-------RYGKDGPFAGAGGFG 79

Length = 391

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 62.3 bits (151), Expect = 3e-12
 Identities = 34/84 (40%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDL---SGNGRDFIEIHNAYETLSDPTARAVYD 112
           YEVL V  TA+  EI+ AYR LAK YHPDL          +EI+ A + L D   R  YD
Sbjct: 7   YEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYD 66

Query: 113 MSLVGRRRTTRTASFGCSG-GSGF 135
                  +    A  G SG  S F
Sbjct: 67  -------QFGHAAFDGSSGFSSNF 83

Length = 372

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 9/84 (10%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
           YEVL +E  A+  EIK A+R LA  YHPD +   ++    F EI+ AY+ LSDP  +A Y
Sbjct: 7   YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQY 66

Query: 112 DMSLVGRRRTTRTASFGCSGGSGF 135
           D     +  T      G  G  GF
Sbjct: 67  D-----QFGTADFNGAGGFGSGGF 85

Length = 380

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 61.2 bits (149), Expect = 6e-12
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYD 112
           Y +L V   A+ +EIK AYR LA+  HPD++ +      F EI  AYE LSDP  R + D
Sbjct: 6   YGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVD 65

Query: 113 M 113
           +
Sbjct: 66  L 66

Length = 378

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 61.4 bits (149), Expect = 7e-12
 Identities = 35/84 (41%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
           YEVL V  TAT+ EIK AYR  A  YHPD +   ++    F E   AY+ LSDP  R+ Y
Sbjct: 8   YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRY 67

Query: 112 DMSLVGRRRTTRTASFGCSGGSGF 135
           D    G       A  G   G G 
Sbjct: 68  DQ--FGHAGVGGAAGGGGFSGEGM 89

Length = 386

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 36/83 (43%), Positives = 40/83 (48%), Gaps = 16/83 (19%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTARAVYD 112
           YEVL V+  A   EIK AYR LA+ YHPD+S   G    F EI  AY  LSD   R  YD
Sbjct: 8   YEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYD 67

Query: 113 MSLVGRRRTTRTASFGCSGGSGF 135
                         FG +G  GF
Sbjct: 68  -------------QFGHAGMDGF 77

Length = 378

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 59.6 bits (144), Expect = 3e-11
 Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 7/83 (8%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSG--NGRD-FIEIHNAYETLSDPTARAVYD 112
           YEVL V+  A++ E+K AYR LA+ YHPD++   +  D F E+  AY+TLSDP  +A YD
Sbjct: 7   YEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYD 66

Query: 113 MSLVGRRRTTRTASFGCSGGSGF 135
                   T     FG  G   F
Sbjct: 67  QF----GHTDPNQGFGGGGAGDF 85

Length = 371

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 59.3 bits (143), Expect = 4e-11
 Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG---RDFIEIHNAYETLSDPTARAVYD 112
           Y++L V  TA+ +++K AY  LAK YHPD +      + F EI+ AY+ L D   RA YD
Sbjct: 6   YQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYD 65

Query: 113 MSLVGRRRTTRTASFGCSGG-SGFHP 137
               G        S G  G   GFHP
Sbjct: 66  R--FGHDAFQNQQSRGGGGNHGGFHP 89

Length = 372

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
           YEVL V  +A   EIK AYR LA  YHPD + + ++    F E++ AYE LS+   R  Y
Sbjct: 6   YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRY 65

Query: 112 D 112
           D
Sbjct: 66  D 66

Length = 397

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 30/60 (50%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTARAVYD 112
           YE+L V  TA+  EIK+AYR LA  YHPD +   G    F +I+ AY  LSD   RA YD
Sbjct: 5   YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYD 64

Length = 371

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 56.3 bits (136), Expect = 3e-10
 Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
           YE+L V   A+  EIK +YR LA  YHPD +   ++    F E   AYE LSDP  R +Y
Sbjct: 7   YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIY 66

Query: 112 D 112
           D
Sbjct: 67  D 67

Length = 366

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 56.0 bits (135), Expect = 4e-10
 Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTARAVYD 112
           YE+L +   A++ +IK AYR LA  YHPD +        F EI  AY  LSD   RA YD
Sbjct: 8   YEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYD 67

Length = 377

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 33/84 (39%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
           YE+L +   A+  EIK AYR +A  YHPD +   ++    F E   AYE L D   RA Y
Sbjct: 6   YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQY 65

Query: 112 DMSLVGRRRTTRTASFGCSGGSGF 135
           D       R   TA  G  G  GF
Sbjct: 66  D-------RFGHTAFEGGGGFEGF 82

Length = 365

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 4/61 (6%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS-GNGR---DFIEIHNAYETLSDPTARAVY 111
           Y+VL V   AT +EIK AYR LA+ YHPD + G+ +    F EI  AY+ LSD   R  Y
Sbjct: 12  YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEY 71

Query: 112 D 112
           D
Sbjct: 72  D 72

Length = 389

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 34/87 (39%), Positives = 38/87 (43%), Gaps = 11/87 (12%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
           YEVL V   A+  EIK AYR LA  YHPD + +  +    F E   AYE L D   RA Y
Sbjct: 7   YEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARY 66

Query: 112 DMSLVGRRRTTRTASFGCSGGSGFHPT 138
           D       R       G  G  GF   
Sbjct: 67  D-------RFGHAGVNGNGGFGGFSSA 86

Length = 373

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTARAVYD 112
           Y +L V   A+  EIK A++ LA+ YHPD++   G    F EI+ AY  LSDP  R +YD
Sbjct: 7   YAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYD 66

Length = 291

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 52.7 bits (126), Expect = 7e-09
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARA 109
           S Y++L V  +A   EIK+AYR LA  YHPD +   ++    F E   AYE L DP  R 
Sbjct: 5   SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64

Query: 110 VYD 112
            YD
Sbjct: 65  AYD 67

Length = 372

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 50.8 bits (121), Expect = 3e-08
 Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARA 109
           S YE+L VE  +    IK +YR LA  YHPD +   ++    F  I+ AY  LSD   RA
Sbjct: 4   SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63

Query: 110 VYD 112
           +YD
Sbjct: 64  LYD 66

Length = 369

>gnl|CDD|211601 TIGR00714, hscB, Fe-S protein assembly co-chaperone HscB

 Score = 48.3 bits (115), Expect = 8e-08
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 12/66 (18%)

Query: 74  YRSLAKVYHPDLSGNGRDFI-------EIHNAYETLSDPTARAVYDMSLVG-----RRRT 121
           YR L   YHPD SG  ++ +        ++ AY TL DP  RA Y + L+       + +
Sbjct: 12  YRQLQAQYHPDASGMAQEQLAASQQSTTLNQAYHTLKDPLRRAEYMLKLLNIDLTQEQTS 71

Query: 122 TRTASF 127
            R  +F
Sbjct: 72  ERDTAF 77

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock [Protein fate, Protein folding and stabilization]. Length = 155

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 11/87 (12%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS-GN---GRDFIEIHNAYETLSDPTARAVY 111
           Y+ L V   A+  EIK AYR LA+  HPD + G+      F  +  A++ LSDP  R  Y
Sbjct: 12  YKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEY 71

Query: 112 DMSLVGRRRTTRTASFG---CSGGSGF 135
           D +    RR      FG     GG GF
Sbjct: 72  DET----RRLFAGGGFGGRRFDGGGGF 94

Length = 392

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 41.9 bits (98), Expect = 4e-05
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG---------RDFIEIHNAYETLSDPT 106
           YE+L ++   +  +IK  YR L+  +HPD +              +  I  AY  L+D  
Sbjct: 101 YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKK 160

Query: 107 ARAVY 111
            R  Y
Sbjct: 161 RRENY 165

Length = 610

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPD 84
           Y+VL V  +    EIK AYR L   +HPD
Sbjct: 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPD 231

Length = 267

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 65  ATISEIKTAYRSLAKVYHPDLSGNGRD------FIEIHNAYETLSDPTARAVYD 112
           A   +I  A++     YHPD +  G +      F  I  A E L D   R  YD
Sbjct: 58  AIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYD 111

Length = 379

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 11/58 (18%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPD-LSGNGR--DFI--------EIHNAYETL 102
            +VL VE  A    IK AYR L    HPD  +  G   +FI        EI  AYE +
Sbjct: 116 LKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173

Length = 174

>gnl|CDD|224002 COG1076, DjlA, DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 56  YEVLRVEP-TATI--SEIKTAYRSLAKVYHPDLSGNG---------RDFIEIHNAYETLS 103
             VL   P    I    +K  YR L + YHPD  G           +   E++ AY+TL 
Sbjct: 3   GFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLK 62

Query: 104 DPTARAVYDMSL 115
           DP  RA Y ++L
Sbjct: 63  DPLLRAEYLLAL 74

Length = 174

>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 9/53 (16%)

Query: 74  YRSLAKVYHPDLSGNG--RDFI-------EIHNAYETLSDPTARAVYDMSLVG 117
           Y+ L + +HPD   N   R+ +        I++AY+TL  P  RA Y +SL G
Sbjct: 24  YQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHG 76

Length = 171

>gnl|CDD|222986 PHA03102, PHA03102, Small T antigen; Reviewed

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 55 LYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGN 88
          L ++L +  +A   +  ++ AY      +HPD  G+
Sbjct: 7  LMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD 42

Length = 153

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 9/87 (10%)

Query: 29  VSGKNKRSPRAVSVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHP-DLSG 87
            S   + S  A ++E+P T        Y++L V   A + EI   Y  LA+ Y+P   SG
Sbjct: 555 ASDVQQDSEAAPTIEIPDTL------FYDILGVGVNADMKEISERYFKLAENYYPPKRSG 608

Query: 88  NG--RDFIEIHNAYETLSDPTARAVYD 112
           N     F +I+ AY+ L D   + +Y+
Sbjct: 609 NEGFHKFKKINEAYQILGDIDKKKMYN 635

Length = 1136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.9
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.88
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.82
PRK14288	369	chaperone protein DnaJ; Provisional	99.82
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.81
PRK14296	372	chaperone protein DnaJ; Provisional	99.8
PRK14279	392	chaperone protein DnaJ; Provisional	99.79
PRK14286	372	chaperone protein DnaJ; Provisional	99.78
PRK14299	291	chaperone protein DnaJ; Provisional	99.77
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.77
PRK14282	369	chaperone protein DnaJ; Provisional	99.76
PRK14287	371	chaperone protein DnaJ; Provisional	99.76
PRK14298	377	chaperone protein DnaJ; Provisional	99.76
PRK14276	380	chaperone protein DnaJ; Provisional	99.76
PRK14283	378	chaperone protein DnaJ; Provisional	99.76
PRK14285	365	chaperone protein DnaJ; Provisional	99.75
PRK14291	382	chaperone protein DnaJ; Provisional	99.75
PRK14277	386	chaperone protein DnaJ; Provisional	99.75
PRK14278	378	chaperone protein DnaJ; Provisional	99.75
PRK14280	376	chaperone protein DnaJ; Provisional	99.75
PRK14294	366	chaperone protein DnaJ; Provisional	99.75
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.74
PRK14295	389	chaperone protein DnaJ; Provisional	99.74
PRK14284	391	chaperone protein DnaJ; Provisional	99.74
PRK14301	373	chaperone protein DnaJ; Provisional	99.74
PRK14297	380	chaperone protein DnaJ; Provisional	99.74
PRK14281	397	chaperone protein DnaJ; Provisional	99.73
PRK10767	371	chaperone protein DnaJ; Provisional	99.73
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.72
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.71
PRK14300	372	chaperone protein DnaJ; Provisional	99.71
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.71
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.71
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.71
PRK14290	365	chaperone protein DnaJ; Provisional	99.71
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.71
PRK14292	371	chaperone protein DnaJ; Provisional	99.7
PRK14289	386	chaperone protein DnaJ; Provisional	99.7
PRK14293	374	chaperone protein DnaJ; Provisional	99.7
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.69
PHA03102	153	Small T antigen; Reviewed	99.68
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.66
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.66
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.64
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.63
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.58
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.58
PRK05014	171	hscB co-chaperone HscB; Provisional	99.57
PRK01356	166	hscB co-chaperone HscB; Provisional	99.56
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.56
PRK00294	173	hscB co-chaperone HscB; Provisional	99.53
PRK03578	176	hscB co-chaperone HscB; Provisional	99.52
PTZ00100	116	DnaJ chaperone protein; Provisional	99.52
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.46
PHA02624	647	large T antigen; Provisional	99.41
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.4
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.36
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.3
PRK01773	173	hscB co-chaperone HscB; Provisional	99.27
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.26
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.24
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.09
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.94
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.88
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.71
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.37
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.32
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.97
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	97.12
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.12
KOG0431	453	consensus Auxilin-like protein and related protein	96.76
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	96.54
PF13446	62	RPT: A repeated domain in UCH-protein	93.27
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	92.03
KOG3442	132	consensus Uncharacterized conserved protein [Funct	86.97
KOG0724	335	consensus Zuotin and related molecular chaperones	86.89
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	85.18

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=5.1e-24  Score=175.53  Aligned_cols=69  Identities=46%  Similarity=0.650  Sum_probs=64.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-C---hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSG-N---GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR  120 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~  120 (147)
                      .+|||+||||+++|+.+|||+|||+|+++||||+++ +   +++|++|++||+||+||++|+.||+++.....
T Consensus         3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            579999999999999999999999999999999998 3   67899999999999999999999999987755

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=9.6e-23  Score=164.89  Aligned_cols=71  Identities=44%  Similarity=0.605  Sum_probs=65.6

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521           50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR  120 (147)
Q Consensus        50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~  120 (147)
                      ...+|||+||||+.+|+..|||+|||+|++++|||+|++    +++|++|+.||+||+||++|+.||.++..+..
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~   87 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK   87 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence            346899999999999999999999999999999999987    56899999999999999999999999976544

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=2.8e-20  Score=151.70  Aligned_cols=68  Identities=47%  Similarity=0.716  Sum_probs=64.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHcCCchHHHHHhhhhhccc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-GRDFIEIHNAYETLSDPTARAVYDMSLVGRR  119 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~  119 (147)
                      ...||+||||+++|+.+|||+|||+|+++|||||+++ .++|++|.+||+||+||++|..||+++....
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~   71 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGL   71 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            4689999999999999999999999999999999987 5889999999999999999999999997665

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.8e-20  Score=155.71  Aligned_cols=66  Identities=41%  Similarity=0.554  Sum_probs=61.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.    .++|++|++||+||+||.+|..||+++..
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~   71 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK   71 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence            3699999999999999999999999999999999873    47899999999999999999999998764

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.81  E-value=2.4e-20  Score=157.24  Aligned_cols=66  Identities=48%  Similarity=0.672  Sum_probs=63.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++.++|++|++||+||+||.+|+.||.++..
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~   92 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEE   92 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence            469999999999999999999999999999999998889999999999999999999999998764

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=6.3e-20  Score=152.62  Aligned_cols=66  Identities=42%  Similarity=0.579  Sum_probs=61.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.+|||+|||+|+++||||++++   .++|++|++||+||+||.+|+.||+++..
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~   71 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA   71 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence            3699999999999999999999999999999999864   57899999999999999999999998764

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.4e-19  Score=151.48  Aligned_cols=65  Identities=37%  Similarity=0.553  Sum_probs=60.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLV  116 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~  116 (147)
                      .+|||+||||+++|+.+|||+|||+|++++|||++++    .++|++|++||+||+||++|+.||+++.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            3699999999999999999999999999999999873    4789999999999999999999999874

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.78  E-value=3.6e-19  Score=148.09  Aligned_cols=66  Identities=42%  Similarity=0.607  Sum_probs=61.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.+|||+|||+++++||||+++.    .++|++|++||+||+||.+|..||+++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   72 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKA   72 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCch
Confidence            3699999999999999999999999999999999863    47899999999999999999999998764

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.77  E-value=1.3e-18  Score=140.42  Aligned_cols=66  Identities=39%  Similarity=0.638  Sum_probs=61.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.+|||+|||++++++|||++++   .++|++|++||++|+||.+|..||.++..
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            3699999999999999999999999999999999864   57899999999999999999999998764

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.77  E-value=4.6e-19  Score=112.43  Aligned_cols=59  Identities=49%  Similarity=0.801  Sum_probs=55.5

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-h----HHHHHHHHHHHHcCCchHHHHHh
Q 042521           54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-G----RDFIEIHNAYETLSDPTARAVYD  112 (147)
Q Consensus        54 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~----~~~~~I~~Ay~vL~d~~~R~~YD  112 (147)
                      |||+||||+++++.++|+++|+++++.+|||+... .    +.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            68999999999999999999999999999999655 3    57999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=7.2e-19  Score=146.10  Aligned_cols=67  Identities=45%  Similarity=0.621  Sum_probs=61.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ..|||+||||+++|+.+|||+|||+|+++||||+++.     .++|++|++||++|+||.+|..||.++...
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~   74 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG   74 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence            4699999999999999999999999999999999763     468999999999999999999999987643

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=8e-19  Score=145.96  Aligned_cols=66  Identities=44%  Similarity=0.705  Sum_probs=61.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.+|||+|||++++++|||++.+   .++|++|++||++|+||.+|+.||+++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~   71 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT   71 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence            3599999999999999999999999999999999864   46899999999999999999999998764

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=8.3e-19  Score=146.16  Aligned_cols=66  Identities=41%  Similarity=0.604  Sum_probs=61.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.+|||+|||+|++++|||++++   .++|++|++||++|+||.+|+.||+++..
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   72 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHA   72 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCcc
Confidence            4699999999999999999999999999999999864   46899999999999999999999998764

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1e-18  Score=145.71  Aligned_cols=66  Identities=44%  Similarity=0.697  Sum_probs=61.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.+|||+|||+|++++|||++++   .++|++|++||++|+||.+|..||+++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   71 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA   71 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence            3699999999999999999999999999999999864   57899999999999999999999998764

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.2e-18  Score=145.25  Aligned_cols=66  Identities=45%  Similarity=0.628  Sum_probs=61.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.+|||+|||+|++++|||++++   .++|++|++||++|+||.+|..||+++..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~   72 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHA   72 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhccc
Confidence            4699999999999999999999999999999999753   57899999999999999999999998754

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.3e-18  Score=144.42  Aligned_cols=65  Identities=40%  Similarity=0.518  Sum_probs=60.8

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.    .++|++|++||++|+||.+|..||+++..
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~   71 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT   71 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence            599999999999999999999999999999999864    36799999999999999999999998764

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.4e-18  Score=144.91  Aligned_cols=66  Identities=47%  Similarity=0.709  Sum_probs=61.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.++||+|||+++++||||++++   .++|++|++||++|+||.+|..||.++..
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~   70 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA   70 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence            3699999999999999999999999999999999864   57899999999999999999999998864

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2e-18  Score=144.20  Aligned_cols=66  Identities=52%  Similarity=0.721  Sum_probs=61.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.+|||+|||+++++||||++++    +++|++|++||+||+||.+|..||.++..
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   73 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHA   73 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhccc
Confidence            3699999999999999999999999999999999863    46899999999999999999999998764

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=1.8e-18  Score=144.16  Aligned_cols=65  Identities=42%  Similarity=0.600  Sum_probs=60.8

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      .|||+||||+++|+.+|||+|||++++++|||++++   .++|++|++||+||+||.+|..||+++..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            599999999999999999999999999999999875   35799999999999999999999998753

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2.2e-18  Score=143.58  Aligned_cols=65  Identities=48%  Similarity=0.679  Sum_probs=61.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      .|||+||||+++|+.+|||+|||+|++++|||++++   .++|++|++||++|+||.+|..||+++..
T Consensus         4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   71 (376)
T PRK14280          4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA   71 (376)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence            599999999999999999999999999999999764   57899999999999999999999998764

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.75  E-value=2.4e-18  Score=142.85  Aligned_cols=66  Identities=42%  Similarity=0.593  Sum_probs=61.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.+|||+|||+|++++|||+++.    .++|++|++||+||+||.+|..||+++..
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~   72 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE   72 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence            4699999999999999999999999999999999874    46899999999999999999999999864

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.9e-18  Score=136.40  Aligned_cols=66  Identities=52%  Similarity=0.676  Sum_probs=61.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..++|+||||+++++.++|||+||+|++++|||++++    .++|++||+||++|+||.+|..||+++.-
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~   99 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGEL   99 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhH
Confidence            5699999999999999999999999999999999887    47899999999999999999999999653

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.5e-18  Score=143.82  Aligned_cols=62  Identities=47%  Similarity=0.679  Sum_probs=58.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhh
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDM  113 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~  113 (147)
                      ..|||+||||+++|+.+|||+|||+|+++||||++..    +++|++|++||+||+||.+|..||+
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            3699999999999999999999999999999999763    4789999999999999999999998

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.6e-18  Score=143.79  Aligned_cols=65  Identities=43%  Similarity=0.593  Sum_probs=60.8

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      .|||+||||+++|+.+|||+|||++++++|||++++    .++|++|++||++|+|+.+|+.||+++..
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   69 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKD   69 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcccc
Confidence            489999999999999999999999999999999874    46899999999999999999999998764

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.8e-18  Score=142.85  Aligned_cols=66  Identities=44%  Similarity=0.572  Sum_probs=61.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.++||+|||++++++|||++++    .++|++|++||+||+||.+|..||.++..
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~   72 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA   72 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence            3699999999999999999999999999999999864    46899999999999999999999998764

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.74  E-value=2.5e-18  Score=143.37  Aligned_cols=65  Identities=45%  Similarity=0.639  Sum_probs=60.9

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      .|||+||||+++|+.+|||+|||+|+++||||+++.    .++|++|++||++|+||.+|..||+++..
T Consensus         4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~   72 (380)
T PRK14297          4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA   72 (380)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence            699999999999999999999999999999999863    46899999999999999999999998764

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=3.8e-18  Score=143.04  Aligned_cols=65  Identities=43%  Similarity=0.595  Sum_probs=61.0

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      .|||+||||+++|+.+|||+|||+|++++|||++++    .++|++|++||++|+||.+|..||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~   71 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA   71 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence            599999999999999999999999999999999874    46899999999999999999999998764

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=6.1e-18  Score=140.61  Aligned_cols=66  Identities=48%  Similarity=0.661  Sum_probs=61.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.+|||+|||+|++++|||++++    .++|++|++||++|+|+.+|..||+++..
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~   72 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHA   72 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcccc
Confidence            3699999999999999999999999999999999863    46899999999999999999999998764

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.2e-17  Score=134.78  Aligned_cols=67  Identities=46%  Similarity=0.708  Sum_probs=62.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ..|||+||||+++|+..|||+||++|+++||||.+.+   .++|++|.+||++|+|+++|..||..+...
T Consensus        42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            3499999999999999999999999999999998765   678999999999999999999999999875

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.2e-17  Score=134.74  Aligned_cols=71  Identities=38%  Similarity=0.549  Sum_probs=65.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccCCC
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRRTT  122 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~~  122 (147)
                      ..|||+||||..+++..+|+++|+..++++||||+++    .++|+.|.+||+||+|+..|..||++++......
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~   78 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ   78 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence            5799999999999999999999999999999999987    4679999999999999999999999998776543

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.1e-17  Score=139.14  Aligned_cols=65  Identities=40%  Similarity=0.617  Sum_probs=60.7

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      .|||+||||+++|+.+|||+|||++++++|||++.+   +++|++|++||++|+|+.+|..||.++..
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~   70 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD   70 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhcccc
Confidence            599999999999999999999999999999998753   56899999999999999999999998754

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.3e-17  Score=139.50  Aligned_cols=76  Identities=43%  Similarity=0.558  Sum_probs=66.9

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccCCCc
Q 042521           49 PGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRRTTR  123 (147)
Q Consensus        49 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~~~  123 (147)
                      +-..++||+||||..+++..+||++||+|++++|||++++     +++|+.|+.||+||+||..|..||....+..+...
T Consensus         4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil~~~~   83 (508)
T KOG0717|consen    4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQILRGKN   83 (508)
T ss_pred             chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHhcCCC
Confidence            3456799999999999999999999999999999999886     57899999999999999999999998875544433


Q ss_pred             c
Q 042521          124 T  124 (147)
Q Consensus       124 ~  124 (147)
                      +
T Consensus        84 s   84 (508)
T KOG0717|consen   84 S   84 (508)
T ss_pred             C
Confidence            3

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.71  E-value=1.4e-17  Score=137.52  Aligned_cols=65  Identities=49%  Similarity=0.698  Sum_probs=60.3

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        54 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      |||+||||+++|+.++||+||+++++++|||+++.   .++|++|++||++|+|+.+|..||.++...
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~   68 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG   68 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence            79999999999999999999999999999999853   578999999999999999999999987643

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.2e-17  Score=139.90  Aligned_cols=70  Identities=40%  Similarity=0.600  Sum_probs=64.9

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521           51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR  120 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~  120 (147)
                      .+.+||.+|+|+++|+.+|||+|||++++.|||||..+       ++.|+.|.+||+||+||.+|..||.++..+..
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            35699999999999999999999999999999999875       45699999999999999999999999998776

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.3e-17  Score=138.37  Aligned_cols=65  Identities=43%  Similarity=0.671  Sum_probs=60.6

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      .|||+||||+++|+.+|||+|||+|++++|||++++     .++|++|++||++|+|+.+|..||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~   72 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV   72 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence            599999999999999999999999999999999864     36799999999999999999999998764

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.71  E-value=1.7e-17  Score=134.76  Aligned_cols=64  Identities=44%  Similarity=0.694  Sum_probs=60.0

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLV  116 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~  116 (147)
                      .|||+||||+++++.+|||+|||++++++|||++.+   +++|++|++||++|+|+.+|..||.++.
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            599999999999999999999999999999999753   5789999999999999999999999864

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=1.7e-17  Score=138.02  Aligned_cols=65  Identities=45%  Similarity=0.626  Sum_probs=61.0

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      .|||+||||+++|+.++||+||+++++++|||++++   .++|++|++||++|+||.+|+.||.++..
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~   69 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA   69 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence            589999999999999999999999999999999864   57899999999999999999999998764

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=2.5e-17  Score=137.64  Aligned_cols=66  Identities=45%  Similarity=0.617  Sum_probs=61.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.+|||+|||++++++|||+++.    .++|++|++||++|+||.+|+.||.++..
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~   73 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA   73 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence            4699999999999999999999999999999999864    46899999999999999999999998764

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=3e-17  Score=136.67  Aligned_cols=65  Identities=46%  Similarity=0.695  Sum_probs=60.8

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      .|||+||||+++++.++||+|||++++++|||++++   .++|+.|++||++|+||.+|+.||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~   70 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEA   70 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence            599999999999999999999999999999999764   57899999999999999999999998754

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.69  E-value=4e-17  Score=101.97  Aligned_cols=54  Identities=50%  Similarity=0.773  Sum_probs=50.4

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCch
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPT  106 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~  106 (147)
                      .|||+||||+++++.++||++|+++++.+|||+++.     .+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            489999999999999999999999999999999883     578999999999999985

>PHA03102 Small T antigen; Reviewed

Probab=99.68  E-value=3e-17  Score=121.16  Aligned_cols=68  Identities=16%  Similarity=0.275  Sum_probs=63.6

Q ss_pred             cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521           53 GSLYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRR  120 (147)
Q Consensus        53 ~~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~  120 (147)
                      ..+|+||||+++|  +.++||+|||++++++|||+++++++|++|++||++|+|+..|..||.++.....
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~   74 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSS   74 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence            4689999999999  9999999999999999999999999999999999999999999999999875543

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.66  E-value=1.1e-16  Score=143.78  Aligned_cols=70  Identities=26%  Similarity=0.378  Sum_probs=64.0

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521           51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR  120 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~  120 (147)
                      ...+||+||||+++|+..+||+|||++++++|||++++   .++|+.|++||+||+||.+|..||.++..+..
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~  643 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK  643 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence            35799999999999999999999999999999999874   46799999999999999999999999876533

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.66  E-value=1.5e-16  Score=97.65  Aligned_cols=51  Identities=51%  Similarity=0.793  Sum_probs=48.1

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCC
Q 042521           54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSD  104 (147)
Q Consensus        54 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d  104 (147)
                      |||+||||+++++.++||++|+++++++|||+++.    .+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999874    5789999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=3.9e-16  Score=119.97  Aligned_cols=73  Identities=33%  Similarity=0.468  Sum_probs=65.0

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC----CChHHHHHHHHHHHHcCCchHHHHHhhhhhcccCC
Q 042521           49 PGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS----GNGRDFIEIHNAYETLSDPTARAVYDMSLVGRRRT  121 (147)
Q Consensus        49 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~----~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~  121 (147)
                      ....-|+|+||||+++++..|||++||+|++++||||.    ++++.|..|.+||+.|+|+..|.+|.+++..-.++
T Consensus        95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq  171 (230)
T KOG0721|consen   95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQ  171 (230)
T ss_pred             HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCcc
Confidence            34567999999999999999999999999999999995    34677999999999999999999999998765544

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=4.3e-16  Score=120.89  Aligned_cols=67  Identities=43%  Similarity=0.561  Sum_probs=61.4

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC------hHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521           50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN------GRDFIEIHNAYETLSDPTARAVYDMSLV  116 (147)
Q Consensus        50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~  116 (147)
                      -..+|+|+||||..+|+..+|++||+++++++|||++..      .++|+.|+.||.||+|.++|+.||..+.
T Consensus        11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~   83 (264)
T KOG0719|consen   11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGS   83 (264)
T ss_pred             ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCC
Confidence            345699999999999999999999999999999999853      4579999999999999999999999875

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=3e-15  Score=112.84  Aligned_cols=64  Identities=50%  Similarity=0.703  Sum_probs=59.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhh
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSL  115 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~  115 (147)
                      ..+||+||||+++++..+|+++|+++++++|||+++.     .+.|..|++||++|+|+..|..||..+
T Consensus         5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            4699999999999999999999999999999999874     378999999999999999999999963

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.58  E-value=3.3e-15  Score=131.83  Aligned_cols=66  Identities=42%  Similarity=0.582  Sum_probs=61.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      .|||+||||+++|+.++||++||++++++|||+++.   .++|+.|++||++|+||.+|..||.++..+
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG   70 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG   70 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence            589999999999999999999999999999999865   357999999999999999999999987654

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.57  E-value=6.2e-15  Score=110.90  Aligned_cols=66  Identities=27%  Similarity=0.457  Sum_probs=58.2

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           53 GSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        53 ~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      .|||+||||++.  ++..+|+++|+++++++|||+..+         .+.+..||+||++|+||..|..|+..+.+.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~   77 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGF   77 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence            489999999995  688999999999999999999653         235889999999999999999999887644

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.56  E-value=7.6e-15  Score=109.95  Aligned_cols=66  Identities=26%  Similarity=0.372  Sum_probs=58.5

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           53 GSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGNG-------RDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        53 ~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~-------~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      .|||+||||++.  ++..+|+++|+++.+++|||+..+.       +.+..||+||++|+||.+|..|+..+.+.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~   76 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNI   76 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCC
Confidence            489999999996  7899999999999999999997652       23679999999999999999999988654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.56  E-value=6.7e-15  Score=120.69  Aligned_cols=72  Identities=35%  Similarity=0.494  Sum_probs=64.5

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHcCCchHHHHHhhhhhcccCC
Q 042521           50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-------RDFIEIHNAYETLSDPTARAVYDMSLVGRRRT  121 (147)
Q Consensus        50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~  121 (147)
                      ...+|||+||||.++|+..||.+|||+++.++|||...++       .+|..|..|-+||+||++|+.||...+.-.+.
T Consensus       391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD~E  469 (504)
T KOG0624|consen  391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLDPE  469 (504)
T ss_pred             hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCChh
Confidence            4568999999999999999999999999999999988774       35999999999999999999999987755443

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.53  E-value=3.1e-14  Score=107.27  Aligned_cols=68  Identities=28%  Similarity=0.514  Sum_probs=60.2

Q ss_pred             CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           51 TGGSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      +..+||++|||++.  .+..+|+++|+++++++|||+...         .+.+..||+||++|+||.+|..|+..+.+.
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~   80 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGH   80 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence            35799999999996  578999999999999999999754         235899999999999999999999998754

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.52  E-value=3.3e-14  Score=107.46  Aligned_cols=67  Identities=25%  Similarity=0.375  Sum_probs=58.7

Q ss_pred             ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           52 GGSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        52 ~~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ..|||+||||++.  ++..+|+++|+++++++|||+...         .+.+..||+||++|+||.+|..|+..+.+.
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~   82 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV   82 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence            3699999999995  689999999999999999999763         123589999999999999999999988754

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.52  E-value=1.8e-14  Score=101.70  Aligned_cols=52  Identities=27%  Similarity=0.388  Sum_probs=49.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcC
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLS  103 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~  103 (147)
                      ..++|+||||+++++.+||+++||++++++|||++++++.|.+|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence            4699999999999999999999999999999999999999999999999985

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=5.9e-14  Score=117.66  Aligned_cols=69  Identities=25%  Similarity=0.367  Sum_probs=63.8

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ....|+|.+|||+.+++.++||+.||+++..+||||+..   +|.|+.|+.||++|+|+++|..||..+...
T Consensus       232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~ke  303 (490)
T KOG0720|consen  232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKE  303 (490)
T ss_pred             hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHH
Confidence            347899999999999999999999999999999999874   678999999999999999999999998754

>PHA02624 large T antigen; Provisional

Probab=99.41  E-value=2.3e-13  Score=118.60  Aligned_cols=60  Identities=23%  Similarity=0.422  Sum_probs=57.9

Q ss_pred             ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHH
Q 042521           52 GGSLYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVY  111 (147)
Q Consensus        52 ~~~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~Y  111 (147)
                      ..++|+||||++++  +.++||+|||++++++|||+++++++|++|++||++|+|+.+|..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            45899999999999  9999999999999999999999999999999999999999999998

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.40  E-value=9.4e-14  Score=111.11  Aligned_cols=94  Identities=26%  Similarity=0.225  Sum_probs=72.4

Q ss_pred             ccccCCCccchhhhcccccCCCCCCcccccccC----------------CCCCCCCccCcccccccCCCCCHHHHHHHHH
Q 042521           12 ALHFSPHPRTGFLDNGAVSGKNKRSPRAVSVEM----------------PVTAPGTGGSLYEVLRVEPTATISEIKTAYR   75 (147)
Q Consensus        12 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr   75 (147)
                      ...+++.|+.++..+...++.+......+....                .......-.++|+||||+++++.++||++||
T Consensus       143 DG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ay~vLgv~~~as~~eIk~aYr  222 (267)
T PRK09430        143 DGSLHPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQQAQRGPTLEDAYKVLGVSESDDDQEIKRAYR  222 (267)
T ss_pred             cCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccccccCCCcHHhHHHHcCCCCCCCHHHHHHHHH
Confidence            456888888888888888888775544432220                0111234479999999999999999999999


Q ss_pred             HHHHHhCCCCCCC-----------hHHHHHHHHHHHHcCCc
Q 042521           76 SLAKVYHPDLSGN-----------GRDFIEIHNAYETLSDP  105 (147)
Q Consensus        76 ~l~~~~HPDk~~~-----------~~~~~~I~~Ay~vL~d~  105 (147)
                      ++++++|||+..+           +++|++|++||++|+..
T Consensus       223 ~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        223 KLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             HHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999532           36799999999999853

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=4.3e-13  Score=105.66  Aligned_cols=67  Identities=40%  Similarity=0.581  Sum_probs=61.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh---HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG---RDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ..|.|+||||.++++..+|.+|||+|++++|||++.+.   +.|..|..||++|.|.+.|..||-.++..
T Consensus        32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhp  101 (329)
T KOG0722|consen   32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHP  101 (329)
T ss_pred             chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCc
Confidence            46999999999999999999999999999999998763   46999999999999999999999988754

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=2e-12  Score=107.87  Aligned_cols=67  Identities=37%  Similarity=0.556  Sum_probs=61.3

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521           50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-----RDFIEIHNAYETLSDPTARAVYDMSLV  116 (147)
Q Consensus        50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~I~~Ay~vL~d~~~R~~YD~~~~  116 (147)
                      .+.+|||.||||..+++..|||++|+++++.+|||++...     .+|++|.+||.+|+||.+|..||...+
T Consensus       370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d  441 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD  441 (486)
T ss_pred             hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence            4468999999999999999999999999999999998753     469999999999999999999998765

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.27  E-value=1.4e-11  Score=92.89  Aligned_cols=66  Identities=23%  Similarity=0.318  Sum_probs=58.4

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           53 GSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGNG---------RDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        53 ~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~---------~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      .|||++|||++.  .+..+|++.|+++.+.+|||+....         +....||+||.+|+||.+|+.|-..+.++
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g   78 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTG   78 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccC
Confidence            489999999995  7999999999999999999987541         24688999999999999999999998743

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=3.2e-12  Score=100.63  Aligned_cols=65  Identities=43%  Similarity=0.675  Sum_probs=59.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-----RDFIEIHNAYETLSDPTARAVYDMSLV  116 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~I~~Ay~vL~d~~~R~~YD~~~~  116 (147)
                      ..|||+||||.++++..+|++||+++++++|||+++..     .+|.+|.+||++|+|+.+|..||.++.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            46899999999999999999999999999999996654     358999999999999999999999997

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.24  E-value=7.7e-12  Score=105.17  Aligned_cols=71  Identities=27%  Similarity=0.394  Sum_probs=63.9

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhcccCC
Q 042521           51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVGRRRT  121 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~~  121 (147)
                      ..-|+||||||..+++..+||++||+|+.++||||.+.         ++++.+|++||+.|+|...|.+|-.++-...++
T Consensus        96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQ  175 (610)
T COG5407          96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQ  175 (610)
T ss_pred             cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCc
Confidence            45699999999999999999999999999999999775         467999999999999999999999998665554

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.09  E-value=2.5e-10  Score=84.83  Aligned_cols=54  Identities=33%  Similarity=0.538  Sum_probs=47.6

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           65 ATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        65 as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      .+..+|+++|+++++++|||+...         .+.+..||+||++|+||.+|+.|+..+.+.
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~   65 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGI   65 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence            478899999999999999998543         246899999999999999999999999754

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=9.3e-10  Score=84.19  Aligned_cols=64  Identities=28%  Similarity=0.440  Sum_probs=56.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchHHHHHhhhh
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-----RDFIEIHNAYETLSDPTARAVYDMSL  115 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~I~~Ay~vL~d~~~R~~YD~~~  115 (147)
                      +-|+|+||.|.|..+.++||+.||+++..+|||+++++     ..|.-|.+||..|-|+..|...+...
T Consensus        52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~~y  120 (250)
T KOG1150|consen   52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLDVY  120 (250)
T ss_pred             ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            56899999999999999999999999999999999974     46999999999999998766555443

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.6e-09  Score=86.42  Aligned_cols=66  Identities=29%  Similarity=0.327  Sum_probs=58.4

Q ss_pred             ccCcccccccCC---CCCHHHHHHHHHHHHHHhCCCCCC------ChHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEP---TATISEIKTAYRSLAKVYHPDLSG------NGRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~---~as~~eIk~ayr~l~~~~HPDk~~------~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|+|.+|||+.   .+.+.+|.++.++.+.+||||+..      ..+-|..|+.||+||+|+..|..||..-..
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~  116 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFD  116 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccc
Confidence            479999999987   778999999999999999999862      256799999999999999999999987553

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.6e-08  Score=68.92  Aligned_cols=51  Identities=27%  Similarity=0.309  Sum_probs=47.7

Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCc
Q 042521           55 LYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDP  105 (147)
Q Consensus        55 ~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~  105 (147)
                      .-.||||+++++.+.||.++|+++...|||+++++-....||+|+++|...
T Consensus        58 A~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   58 AALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence            346999999999999999999999999999999999999999999999754

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=4.2e-07  Score=83.49  Aligned_cols=53  Identities=34%  Similarity=0.474  Sum_probs=46.4

Q ss_pred             CccCcccccccCCC----CCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHcC
Q 042521           51 TGGSLYEVLRVEPT----ATISEIKTAYRSLAKVYHPDLSGN-GRDFIEIHNAYETLS  103 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~----as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~I~~Ay~vL~  103 (147)
                      +..+.|+||.|+-+    ...++||++|++++.+|||||++. -+.|..+|+||+.|.
T Consensus      1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence            45688999999862    355889999999999999999987 578999999999998

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=5.6e-07  Score=70.66  Aligned_cols=54  Identities=31%  Similarity=0.522  Sum_probs=48.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHH-HcCCc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYE-TLSDP  105 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~-vL~d~  105 (147)
                      -+.+|.||||..+++.++++.+|..|++++|||.+.+   .+.|.+|.+||. ||...
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999998765   578999999999 77643

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=1.4e-05  Score=59.15  Aligned_cols=70  Identities=30%  Similarity=0.562  Sum_probs=57.9

Q ss_pred             CccCcccccccCC--CCCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhccc
Q 042521           51 TGGSLYEVLRVEP--TATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVGRR  119 (147)
Q Consensus        51 ~~~~~Y~iLgv~~--~as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~  119 (147)
                      ...+||.++|...  ..++..++.-|....+++|||+...         .+...+||+||.+|.||-.|+.|-..+.+..
T Consensus         6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g~e   85 (168)
T KOG3192|consen    6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKGQE   85 (168)
T ss_pred             hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Confidence            4568999998665  4567777779999999999998543         4568999999999999999999999888754


Q ss_pred             C
Q 042521          120 R  120 (147)
Q Consensus       120 ~  120 (147)
                      .
T Consensus        86 ~   86 (168)
T KOG3192|consen   86 Q   86 (168)
T ss_pred             C
Confidence            3

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=97.12  E-value=0.00093  Score=48.05  Aligned_cols=53  Identities=23%  Similarity=0.261  Sum_probs=43.0

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCch
Q 042521           54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPT  106 (147)
Q Consensus        54 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~  106 (147)
                      .-..||+|++..+.++|.+.|.+|....+|+++++.-.-..|..|.+.|..+.
T Consensus        59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999998899999999988655

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.12  E-value=0.00023  Score=53.58  Aligned_cols=83  Identities=25%  Similarity=0.310  Sum_probs=57.4

Q ss_pred             CCCccchhhhcccccCCCCCCcccccccCCCCCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------
Q 042521           16 SPHPRTGFLDNGAVSGKNKRSPRAVSVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------   88 (147)
Q Consensus        16 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------   88 (147)
                      ...++..+..+....+......+........    ...+.|.+||+....+..+|+++|+++....|||+...       
T Consensus        80 ~~~e~~~l~~~~~l~~~~~~~~e~~~~~~~~----~~~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~  155 (174)
T COG1076          80 HAKERQTLRDIAFLLEQSELREELEEAREQL----DREDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEF  155 (174)
T ss_pred             chhHHHHHHHHHHHHHhhHHHHHHHHHHHcc----cchhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHH
Confidence            4444555555555444444444443333111    12688999999999999999999999999999997432       


Q ss_pred             ----hHHHHHHHHHHHHc
Q 042521           89 ----GRDFIEIHNAYETL  102 (147)
Q Consensus        89 ----~~~~~~I~~Ay~vL  102 (147)
                          .+++++|++||+.+
T Consensus       156 ~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         156 IEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence                45688888888754

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=96.76  E-value=0.0016  Score=55.93  Aligned_cols=33  Identities=24%  Similarity=0.395  Sum_probs=27.4

Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 042521           56 YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN   88 (147)
Q Consensus        56 Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~   88 (147)
                      ++=+++..-.++.+||++||+.++.+||||...
T Consensus       391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq  423 (453)
T KOG0431|consen  391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQ  423 (453)
T ss_pred             cccCchhhccCHHHHHHHHHhhhheeCcccccC
Confidence            444556667899999999999999999999653

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.54  E-value=0.0018  Score=48.77  Aligned_cols=65  Identities=31%  Similarity=0.550  Sum_probs=52.4

Q ss_pred             CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           54 SLYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGNG---------RDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        54 ~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~---------~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      +++..+|.++.+  ..+.++..|+.+.+.+|||+....         +.+..++.||.+|.+|..|..|-..+..+
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g   77 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADG   77 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccc
Confidence            456666766644  566789999999999999987641         35888999999999999999998887633

>PF13446 RPT: A repeated domain in UCH-protein

Probab=93.27  E-value=0.17  Score=31.42  Aligned_cols=45  Identities=16%  Similarity=0.266  Sum_probs=35.0

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCC
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSD  104 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d  104 (147)
                      .+.|++|||+++.+.+.|-.+|+....       .++.....+.+|..++.+
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-------~~P~~~~~~r~AL~~Ia~   49 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN-------DDPSQKDTLREALRVIAE   49 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH-------cChHhHHHHHHHHHHHHH
Confidence            357999999999999999999999888       223456666677766654

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=92.03  E-value=0.38  Score=36.98  Aligned_cols=40  Identities=25%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCc
Q 042521           62 EPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDP  105 (147)
Q Consensus        62 ~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~  105 (147)
                      +++|+.+||.+|+.++..+|    .++++.-..|..||+.|.=.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~ILM~   40 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAILME   40 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Confidence            46899999999999999988    55678889999999976544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>KOG3442 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.97  E-value=1.9  Score=30.96  Aligned_cols=54  Identities=20%  Similarity=0.204  Sum_probs=44.0

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchH
Q 042521           54 SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTA  107 (147)
Q Consensus        54 ~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~  107 (147)
                      .--+||+|+...+.++|.+.|..|-....+.++++.-.-..|-.|-+-|..+..
T Consensus        60 Ea~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld~El~  113 (132)
T KOG3442|consen   60 EAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLDEELK  113 (132)
T ss_pred             HHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence            345899999999999999999999999999999986666666777776654443

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=86.89  E-value=0.73  Score=37.76  Aligned_cols=50  Identities=30%  Similarity=0.430  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCC--------ChHHHHHHHHHHHHcCCchHHHHHhhh
Q 042521           65 ATISEIKTAYRSLAKVYHPDLSG--------NGRDFIEIHNAYETLSDPTARAVYDMS  114 (147)
Q Consensus        65 as~~eIk~ayr~l~~~~HPDk~~--------~~~~~~~I~~Ay~vL~d~~~R~~YD~~  114 (147)
                      ++..+|..+|+...+..||++..        ..+.++.|.+||.+|.+...|...|..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~   61 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW   61 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence            56788999999999999999763        245689999999999986544444433

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=85.18  E-value=1.4  Score=30.92  Aligned_cols=33  Identities=21%  Similarity=0.398  Sum_probs=24.9

Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHH
Q 042521           64 TATISEIKTAYRSLAKVYHPDLSGNGRDFIEIH   96 (147)
Q Consensus        64 ~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~   96 (147)
                      ..+..+++.+.|..-+++|||..+....-+++|
T Consensus         5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~N   37 (112)
T PF14687_consen    5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVN   37 (112)
T ss_pred             hhhhHHHHHHHHHHHHHhCCcccccChHHHHhh
Confidence            456788999999999999999776543334443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-10
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		3e-09
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		5e-09
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		1e-08
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		2e-08
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		3e-08
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		3e-08
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		3e-08
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		4e-08
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		4e-08
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		3e-07
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		3e-07
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		8e-07
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		1e-06
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		1e-06
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		2e-06
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		6e-06
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		7e-06
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		7e-06
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		3e-05
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		6e-05
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		8e-05
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		9e-05
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		1e-04
4it5_A	174	Chaperone Hscb From Vibrio Cholerae Length = 174		6e-04

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-GRDFIEIHNAYETLSDPTARAVYD 112
           + Y+VL V+P AT  E+K AYR LA  YHPD + N G  F +I  AYE LSD   R +YD
Sbjct: 7   TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-RDFIEIHNAYETLSDPTARAVYDM 113
           Y+VL V+P A+ +E+K AYR +A  +HPD + +G   F +I  AYE LSD   R +YD 
Sbjct: 11  YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQ 69

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDL-SGNGRDFIEIHNAYETLSDPTARAVYD 112
            LY++L V P+A   E+K  YR  A  YHPD  +G+   F EI  A+E L+DP  R +YD
Sbjct: 9   KLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68
Query: 113 M 113
Sbjct: 69  Q 69

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGR---DFIEIHNAYETLSDPTARAVYD 112
           Y +L V+PT  +  IKTAYR LA+ YHPD+S        F ++  A+E L D   RA YD
Sbjct: 31  YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90
Query: 113 MSL-------VGRRRTTRTASF 127
                      GR+R T   S+
Sbjct: 91  QLWQHRNDPGFGRQRQTHEQSY 112

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 4/66 (6%)
Query: 51  TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPT 106
           +G SLY VL ++  AT  +IK +YR LA  YHPD + +  +    F EI+NA+  L+D T
Sbjct: 15  SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74
Query: 107 ARAVYD 112
            R +YD
Sbjct: 75  KRNIYD 80

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARA 109
             YE+L V  TA   EI+ AY+ LA  YHPD +   ++    F EI  AYE L+D   RA
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 110 VYDM 113
            YD 
Sbjct: 64  AYDQ 67

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
           YE+L V  TA   EI+ AY+ LA  YHPD +   ++    F EI  AYE L+D   RA Y
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 112 DM 113
           D 
Sbjct: 66  DQ 67

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS----GNGRDFIEIHNAYETLSDPTARAVY 111
           Y ++ V+PT  +  IKTAYR LA+ YHPD+S       R F E+  A+E LSD   RA Y
Sbjct: 8   YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR-FKEVAEAWEVLSDEQRRAEY 66
Query: 112 DM 113
           D 
Sbjct: 67  DQ 68

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARA 109
             YE+L V  TA   EI+ AY+ LA  YHPD +   ++    F EI  AYE L+D   RA
Sbjct: 4   DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 110 VYDM 113
            YD 
Sbjct: 64  AYDQ 67

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 50  GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG----RDFIEIHNAYETLSDP 105
           G+ G  Y++L V   A+  EIK AY  LAK YHPD + +       F ++  AYE LSD 
Sbjct: 4   GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 106 TARAVYD 112
             R  YD
Sbjct: 64  VKRKQYD 70

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD-----FIEIHNAYETLSDPTARAV 110
           YEVL V+ +A+  +IK AYR LA  +HPD + + ++     F  +  AYE LSD   R++
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 111 YD 112
           YD
Sbjct: 72  YD 73

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFI-----EIHNAYETLSDPTAR 108
           S YE+L V  +A+  +IK AYR  A  +HPD + + ++F      E+  AYE LSD   R
Sbjct: 3   SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 109 AVYD 112
            +YD
Sbjct: 63  EIYD 66

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTARAVYD 112
           Y VL V  TA+ ++IK AY+ LA+ +HPD +   G    FI+I  AYE LS+   R  YD
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 52  GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTAR 108
           G   Y+ L +   A+  EIK AYR  A  YHPD +   G    F EI  AY+ LSDP  R
Sbjct: 2   GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 109 AVYD 112
            ++D
Sbjct: 62  EIFD 65

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD-----FIEIHNAYETLSDPTARAV 110
           YEVL V   A+   IK AYR LA  +HPD +   ++     F ++  AYE LSD   R +
Sbjct: 12  YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71
Query: 111 YD 112
           YD
Sbjct: 72  YD 73

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 50  GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPT 106
           G+ G  YE+L V   A+  ++K AYR LA  +HPD +   G    F  I  AY  LS+P 
Sbjct: 4   GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63
Query: 107 ARAVYDM 113
            R  YD 
Sbjct: 64  KRKQYDQ 70

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG----RDFIEIHNAYETLSDPTARA 109
           + Y +L V  TA+  EI+ A++ LA   HPD + N      DF++I+ AYE L D   R 
Sbjct: 3   NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 110 VYD 112
            YD
Sbjct: 63  KYD 65

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYD 112
           Y++L V  +A+  +IK A+  LA  YHPD + +      F EI  AYETLSD   R  YD
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGR----DFIEIHNAYETLSDPTARA 109
           + Y +L V  TA+  EI+ A++ LA   HPD + N      DF++I+ AYE L D   R 
Sbjct: 22  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 110 VYD 112
            YD
Sbjct: 82  KYD 84

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 10/72 (13%)
Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPD----------LSGNGRDFIEIHNAYETLSDP 105
           Y +L  +P+A +S++K  Y+ L  +YHPD          +    + FIEI  A++ L + 
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78
Query: 106 TARAVYDMSLVG 117
             +  YD+   G
Sbjct: 79  ETKKKYDLQRSG 90

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG----------RDFIEIHNAYETLSDP 105
           Y +L  +P+A IS++K  Y+ L  +YHPD               + FIEI  A++ L + 
Sbjct: 13  YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72
Query: 106 TARAVYDMS 114
             +  YD+ 
Sbjct: 73  ETKREYDLQ 81

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSDPTAR 108
           Y++L V+  A   EI  AYR LA  +HPD   N        + FI+I  A E LSDP  R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
Query: 109 AVYD 112
             +D
Sbjct: 445 KKFD 448

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 54  SLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARA 109
           +LY++L V  TAT ++IK AY     +YHPD +    +    F  I  AY  L   T R 
Sbjct: 18  ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77
Query: 110 VYDMSLV 116
            YD  L+
Sbjct: 78  KYDRGLL 84

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSDPTAR 108
           Y++L V+  A   EI  AYR LA  +HPD   N        + FI+I  A E LSDP  R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 109 AVYD 112
             +D
Sbjct: 445 KKFD 448

>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae Length = 174

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 9/59 (15%)
Query: 68  SEIKTAYRSLAKVYHPD--LSGNGRDFI-------EIHNAYETLSDPTARAVYDMSLVG 117
           S + + +R+L K +HPD   + + RD +       +I++AY+TL DP  RA Y +SL G
Sbjct: 21  SLLSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKDPLRRAEYLLSLQG 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	6e-22
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-21
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	1e-21
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	4e-21
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	6e-21
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	3e-20
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	1e-19
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	2e-19
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-19
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-19
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	2e-19
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	3e-19
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	4e-19
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-19
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	6e-19
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	1e-18
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	2e-18
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	4e-18
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	5e-18
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	6e-18
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	7e-18
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	1e-17
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-17
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	2e-17
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	3e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-15
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	2e-14
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	2e-14
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	8e-14
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	2e-12
2guz_A	71	Mitochondrial import inner membrane translocase su	6e-11
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	5e-10
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	7e-06
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	8e-05
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	2e-04

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 82.3 bits (204), Expect = 6e-22
 Identities = 27/59 (45%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 55  LYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD-FIEIHNAYETLSDPTARAVYD 112
            Y+VL V+P A+ +E+K AYR +A  +HPD + +G + F +I  AYE LSD   R +YD
Sbjct: 10  YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 84.1 bits (208), Expect = 1e-21
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 10/68 (14%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPD-LSGNGRD---------FIEIHNAYETLSDP 105
           Y +L  +P+A IS++K  Y+ L  +YHPD  S +            FIEI  A++ L + 
Sbjct: 13  YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72

Query: 106 TARAVYDM 113
             +  YD+
Sbjct: 73  ETKREYDL 80

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 84.2 bits (208), Expect = 1e-21
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 55  LYEVLRVEPTATIS--EIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYD 112
           L ++L +E +A  +   ++ AY    K +HPD  G+     +++  Y+ + D    A   
Sbjct: 13  LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 72

Query: 113 MSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQC 146
                      T  F  S   G       +  +C
Sbjct: 73  D---FGGFWDATEVFASSLNPGVDAIYCKQWPEC 103

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 80.4 bits (199), Expect = 4e-21
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 55  LYEVLRVEPTATISEIKTAYRSLAKVYHPDLS-GNGRDFIEIHNAYETLSDPTARAVYD 112
           LY++L V P+A   E+K  YR  A  YHPD   G+   F EI  A+E L+DP  R +YD
Sbjct: 10  LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 81.0 bits (200), Expect = 6e-21
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 55  LYEVLRVEPTATIS--EIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYD 112
           L ++L +E +A  +   ++ AY    K +HPD  G+     +++  Y+ + D    A   
Sbjct: 10  LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 69

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 78.6 bits (194), Expect = 3e-20
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 23/89 (25%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDL-SGNGRD---------FIEIHNAYETLSDP 105
           Y +L  +P+A +S++K  Y+ L  +YHPD  S +            FIEI  A++ L + 
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 106 TARAVYDMSLVGRRRTTRTASFGCSGGSG 134
             +  YD+                   SG
Sbjct: 79  ETKKKYDL-------------QRSGPSSG 94

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 76.6 bits (189), Expect = 1e-19
 Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTARAVYD 112
           Y VL V  TA+ ++IK AY+ LA+ +HPD +   G    FI+I  AYE LS+   R  YD
Sbjct: 20  YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 77.1 bits (190), Expect = 2e-19
 Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 4/66 (6%)

Query: 51  TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPT 106
           +G SLY VL ++  AT  +IK +YR LA  YHPD + +  +    F EI+NA+  L+D T
Sbjct: 15  SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74

Query: 107 ARAVYD 112
            R +YD
Sbjct: 75  KRNIYD 80

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 76.1 bits (188), Expect = 2e-19
 Identities = 26/60 (43%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDL---SGNGRDFIEIHNAYETLSDPTARAVYD 112
           Y+ L +   A+  EIK AYR  A  YHPD     G    F EI  AY+ LSDP  R ++D
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 76.1 bits (188), Expect = 2e-19
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
           Y++L V   A+  EIK AY  LAK YHPD + +       F ++  AYE LSD   R  Y
Sbjct: 10  YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 69

Query: 112 D 112
           D
Sbjct: 70  D 70

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 76.1 bits (188), Expect = 2e-19
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS---GNGRDFIEIHNAYETLSDPTARAVYD 112
           YE+L V   A+  ++K AYR LA  +HPD +   G    F  I  AY  LS+P  R  YD
Sbjct: 10  YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYD 69

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 76.3 bits (188), Expect = 3e-19
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 55  LYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAV 110
           LY++L V  TAT ++IK AY     +YHPD +    +    F  I  AY  L   T R  
Sbjct: 19  LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78

Query: 111 YD 112
           YD
Sbjct: 79  YD 80

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 76.3 bits (188), Expect = 4e-19
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 8/65 (12%)

Query: 56  YEVLRVEPTA-TISEIKTAYRSLAKVYHPDLSGNGRD-------FIEIHNAYETLSDPTA 107
           Y+VL V        ++  AYR+LA+ +HPD   N  +       F  I  AYETL D  A
Sbjct: 18  YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77

Query: 108 RAVYD 112
           +  YD
Sbjct: 78  KTNYD 82

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 78.8 bits (194), Expect = 4e-19
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
           Y +L V  TA+  EI+ A++ LA   HPD + N  +    F++I+ AYE L D   R  Y
Sbjct: 5   YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64

Query: 112 D 112
           D
Sbjct: 65  D 65

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 75.0 bits (185), Expect = 6e-19
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS-GNGRD----FIEIHNAYETLSDPTARAV 110
           YEVL V   A+   IK AYR LA  +HPD +  N  +    F ++  AYE LSD   R +
Sbjct: 12  YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71

Query: 111 YD 112
           YD
Sbjct: 72  YD 73

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 75.2 bits (185), Expect = 1e-18
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
           Y +L  +  +++ +I   ++  A   HPD           F ++  A E L++  +RA Y
Sbjct: 23  YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82

Query: 112 D 112
           D
Sbjct: 83  D 83

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 73.5 bits (181), Expect = 2e-18
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS-GNGRD----FIEIHNAYETLSDPTARAV 110
           YEVL V+ +A+  +IK AYR LA  +HPD +  N  +    F  +  AYE LSD   R++
Sbjct: 12  YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71

Query: 111 YD 112
           YD
Sbjct: 72  YD 73

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 73.1 bits (180), Expect = 4e-18
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD-----FIEIHNAYETLSDPTARAV 110
           YE+L V  +A+  +IK AYR  A  +HPD + + ++     F E+  AYE LSD   R +
Sbjct: 5   YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query: 111 YDM----SLVGRRRTTRTASFGCSGGSGFHP 137
           YD      L G       A  G  G    H 
Sbjct: 65  YDRYGREGLTGTGTGPSRAEAGSGGPGLEHH 95

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 72.7 bits (179), Expect = 5e-18
 Identities = 26/60 (43%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG---RDFIEIHNAYETLSDPTARAVYD 112
           Y++L V  +A+  +IK A+  LA  YHPD + +      F EI  AYETLSD   R  YD
Sbjct: 10  YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 77.3 bits (191), Expect = 6e-18
 Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLS-GNGRD--FIEIHNAYETLSDPTARAVYD 112
           Y +L V+PT  +  IKTAYR LA+ YHPD+S  N  +  F ++  A+E L D   RA YD
Sbjct: 31  YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 72.4 bits (178), Expect = 7e-18
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-GRD--FIEIHNAYETLSDPTARAVYD 112
           +++L V+P A+  E+  AYR LA + HPD     G +  F  + NA   L          
Sbjct: 30  WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGPSS 89

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 74.2 bits (182), Expect = 1e-17
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 56  YEVLRVEPTATI--SEIKTAYRSLAKVYHPDLSGNGRD---------FIEIHNAYETLSD 104
           + +  +     +    +   ++ L + YHPD   +G              I+ A++TL  
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 105 PTARAVYDMSLVG 117
           P  RA Y +SL G
Sbjct: 64  PLMRAEYLLSLHG 76

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 77.1 bits (189), Expect = 2e-17
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
           Y +L V  TA+  EI+ A++ LA   HPD + N  +    F++I+ AYE L D   R  Y
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83

Query: 112 DMSLVGRRRTTRTASFGCSGGSGFHPTRRWETDQCW 147
           D          +   +       +      +  +  
Sbjct: 84  DKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEII 119

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 71.5 bits (176), Expect = 2e-17
 Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAVY 111
           YE+L V  TA   EI+ AY+ LA  YHPD +   ++    F EI  AYE L+D   RA Y
Sbjct: 6   YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

Query: 112 D 112
           D
Sbjct: 66  D 66

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 71.3 bits (175), Expect = 2e-15
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-------RDFIEIHNAYETLSDPTAR 108
           Y++L V+  A   EI  AYR LA  +HPD   N        + FI+I  A E LSDP  R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444

Query: 109 AVYDM 113
             +D 
Sbjct: 445 KKFDD 449

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 63.6 bits (155), Expect = 2e-14
 Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 8/62 (12%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD-----FIEIHNAYETLSDPTARAV 110
             V+        SE K   R L   +HPD +    D     F  + N    L     +A 
Sbjct: 19  TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAF 75

Query: 111 YD 112
            D
Sbjct: 76  LD 77

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 65.8 bits (160), Expect = 2e-14
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 56  YEVLRVEPTAT-------ISEIKTAYRSLAKVYHPDLSGNGRD-FIEIHNAYETLSDPTA 107
           YE+                S ++  YR L   +HPD++  G +    ++ AY TL DP  
Sbjct: 14  YELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLR 73

Query: 108 RAVYDMSLVG 117
           R+ Y + L+ 
Sbjct: 74  RSQYMLKLLR 83

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 61.5 bits (149), Expect = 8e-14
 Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 55  LYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYD 112
           L E+L++          ++ AY+  + + HPD  G+     E+++ + T          +
Sbjct: 13  LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMN 72

Query: 113 MSLVG 117
           +   G
Sbjct: 73  LGGTG 77

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 60.9 bits (147), Expect = 2e-12
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 56  YEVLRVEPTATIS--EIKTAYRSLAKVYHPDLSGNGRD---------FIEIHNAYETLSD 104
           + ++    +  +   +++  Y+ L ++ HPD                   +++AY+TL  
Sbjct: 46  FSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105

Query: 105 PTARAVYDMSLVG 117
           P +R +Y + L G
Sbjct: 106 PLSRGLYLLKLHG 118

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 53.9 bits (130), Expect = 6e-11
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 56  YEVLRVEPTA-TISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTAR 108
            ++L +     T  ++K  +R +    HPD  G+     +I+ A + L      
Sbjct: 17  LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 54.1 bits (129), Expect = 5e-10
 Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 52  GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPD-LSGNGRD------FIEIHNAYETLSD 104
           G + ++ + +    T  ++K  YR    V HPD  +G   +      F+E+++A+    +
Sbjct: 116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 175

Query: 105 PTARAVY 111
              + +Y
Sbjct: 176 QGQKPLY 182

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 41.1 bits (96), Expect = 7e-06
 Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 7/60 (11%)

Query: 52  GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPD-LSGNGRD------FIEIHNAYETLSD 104
           G + ++ + +    T  ++K  YR    V HP   +G   +      F+E+++A+    +
Sbjct: 32  GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 38.4 bits (89), Expect = 8e-05
 Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 11/62 (17%)

Query: 53  GSLYEVLRVEPTATISEIKTAYRSLAKVYHPD-LSGNGRD----------FIEIHNAYET 101
           GS ++ + +      + ++ +Y+    + HPD L   G            F  +  A++ 
Sbjct: 40  GSGWKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDH 99

Query: 102 LS 103
            +
Sbjct: 100 FN 101

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 33 NKRSPRAVSVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPD 84
          +  S      E+ +    T   L  + +VEP ATI+EIK  +      ++P 
Sbjct: 2  SSGSSGMKHYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPA 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.86
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.85
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.85
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.85
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.85
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.84
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.84
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.84
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.84
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.84
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.84
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.83
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.83
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.82
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.8
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.8
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.79
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.76
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.76
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.76
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.75
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.75
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.74
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.73
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.72
2guz_A	71	Mitochondrial import inner membrane translocase su	99.71
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.69
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.68
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.68
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.63
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.63
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.6
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.56
2guz_B	65	Mitochondrial import inner membrane translocase su	99.22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.06
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	90.63

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=8.7e-22  Score=131.98  Aligned_cols=69  Identities=42%  Similarity=0.620  Sum_probs=63.7

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ....+||+||||+++++.++||++|+++++++|||+++.   .+.|+.|++||++|+||.+|..||.++...
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   75 (88)
T 2ctr_A            4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSA   75 (88)
T ss_dssp             CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHH
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            346799999999999999999999999999999999886   568999999999999999999999998644

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.85  E-value=1.3e-21  Score=128.45  Aligned_cols=68  Identities=43%  Similarity=0.673  Sum_probs=62.7

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      +...|||+||||+++++.++||++|+++++++|||+++.    .+.|+.|++||++|+||.+|..||.++..
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   75 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG   75 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence            346799999999999999999999999999999999875    57899999999999999999999998754

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.85  E-value=1.4e-21  Score=126.65  Aligned_cols=66  Identities=39%  Similarity=0.645  Sum_probs=61.4

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521           51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-GRDFIEIHNAYETLSDPTARAVYDMSLV  116 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~I~~Ay~vL~d~~~R~~YD~~~~  116 (147)
                      ...+||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||.++.
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            35699999999999999999999999999999999876 6889999999999999999999999874

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1e-21  Score=132.67  Aligned_cols=70  Identities=39%  Similarity=0.639  Sum_probs=64.2

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521           51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSG-NGRDFIEIHNAYETLSDPTARAVYDMSLVGRRR  120 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~  120 (147)
                      ...|||+||||+++++.++||++|+++++++|||++. +.++|++|++||++|+||.+|..||.++.....
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   76 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAAR   76 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhh
Confidence            3569999999999999999999999999999999985 578999999999999999999999999876544

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.85  E-value=2.3e-21  Score=126.70  Aligned_cols=67  Identities=39%  Similarity=0.571  Sum_probs=62.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ..|||+||||+++++.++||++|+++++++|||++++   .+.|+.|++||++|+||.+|..||.++..+
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   71 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHcccc
Confidence            3689999999999999999999999999999999864   578999999999999999999999998654

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=2e-21  Score=127.23  Aligned_cols=68  Identities=40%  Similarity=0.623  Sum_probs=62.7

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ....|||+||||+++++.++||++|+++++++|||++..   .+.|+.|++||++|+||.+|..||.++..
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   74 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG   74 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            346799999999999999999999999999999999864   57899999999999999999999998854

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=3.3e-21  Score=127.31  Aligned_cols=68  Identities=41%  Similarity=0.573  Sum_probs=62.3

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-----RDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ...|||+||||+++++.++||++|+++++++|||+++..     +.|+.|++||++|+||.+|..||.++...
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   79 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP   79 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            357999999999999999999999999999999998763     57999999999999999999999987543

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=3e-21  Score=132.02  Aligned_cols=68  Identities=37%  Similarity=0.572  Sum_probs=62.7

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ...+||+||||+++++.++||++|+++++++|||+++.    .++|++|++||++|+||.+|..||..+...
T Consensus        15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   86 (99)
T 2yua_A           15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSD   86 (99)
T ss_dssp             CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCH
T ss_pred             CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcccc
Confidence            45799999999999999999999999999999999864    578999999999999999999999987643

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=5.7e-21  Score=128.84  Aligned_cols=68  Identities=38%  Similarity=0.590  Sum_probs=62.3

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ...|||+||||+++++.++||++|+++++++|||+++.     .+.|++|++||++|+||.+|..||..+...
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~   79 (92)
T 2dmx_A            7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDS   79 (92)
T ss_dssp             CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCS
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccc
Confidence            35699999999999999999999999999999999875     367999999999999999999999997643

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.84  E-value=6.6e-21  Score=127.67  Aligned_cols=67  Identities=40%  Similarity=0.584  Sum_probs=62.2

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ...|||+||||+++++.++||++|+++++++|||++++   .+.|+.|++||++|+||.+|..||.++..
T Consensus        15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   84 (88)
T 2cug_A           15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG   84 (88)
T ss_dssp             SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence            35799999999999999999999999999999999864   57899999999999999999999999853

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.84  E-value=2.5e-21  Score=130.83  Aligned_cols=69  Identities=30%  Similarity=0.601  Sum_probs=62.9

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           50 GTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----------GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        50 ~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ....|||+||||+++++.++||++|+++++++|||+++.          .+.|++|++||++|+||.+|..||..+.+.
T Consensus        13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~   91 (94)
T 1wjz_A           13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP   91 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred             CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCC
Confidence            346799999999999999999999999999999999763          367999999999999999999999998654

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.83  E-value=5e-21  Score=131.14  Aligned_cols=68  Identities=38%  Similarity=0.563  Sum_probs=61.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR  120 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~  120 (147)
                      .|||+||||+++++.++||++|+++++++|||+++.     .+.|+.|++||++|+||.+|..||.++.....
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~   74 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT   74 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            489999999999999999999999999999999875     36799999999999999999999999875543

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=7e-21  Score=132.93  Aligned_cols=70  Identities=21%  Similarity=0.327  Sum_probs=64.9

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521           51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR  120 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~  120 (147)
                      ...|||+||||+++++.++||++|+++++++|||++++    .++|++|++||++|+||.+|..||.++..+..
T Consensus        18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~   91 (112)
T 2ctq_A           18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS   91 (112)
T ss_dssp             CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence            35799999999999999999999999999999999875    67899999999999999999999999986654

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.82  E-value=2.4e-20  Score=129.64  Aligned_cols=68  Identities=43%  Similarity=0.609  Sum_probs=62.8

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ...+||+||||+++++.++||++|+++++++|||+++.    .+.|++|++||++|+||.+|..||.++..+
T Consensus        15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   86 (109)
T 2ctw_A           15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLG   86 (109)
T ss_dssp             CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHH
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccc
Confidence            35799999999999999999999999999999999875    568999999999999999999999987643

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.80  E-value=1.5e-20  Score=129.33  Aligned_cols=69  Identities=41%  Similarity=0.561  Sum_probs=63.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR  120 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~  120 (147)
                      ..|||+||||+++++.++||++|+++++++|||+++.    .++|++|++||++|+||.+|..||.++.....
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   74 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence            3689999999999999999999999999999999874    46899999999999999999999999876544

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.80  E-value=2.8e-20  Score=129.10  Aligned_cols=68  Identities=37%  Similarity=0.482  Sum_probs=62.9

Q ss_pred             CccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           51 TGGSLYEVLRVEPTA-TISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~a-s~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ...|||+||||++++ +.++||++|+++++++|||++++       .+.|++|++||++|+||.+|..||..+...
T Consensus        13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~   88 (109)
T 2qsa_A           13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP   88 (109)
T ss_dssp             TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred             CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence            367999999999999 99999999999999999999876       467999999999999999999999998643

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.79  E-value=1.2e-19  Score=133.10  Aligned_cols=68  Identities=31%  Similarity=0.619  Sum_probs=62.4

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh----------HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG----------RDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----------~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ...|||+||||+++++.++||++|+++++++|||+++..          +.|+.|++||++|+||.+|+.||..+.+.
T Consensus         8 ~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~~   85 (155)
T 2l6l_A            8 PKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCED   85 (155)
T ss_dssp             CCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHHH
T ss_pred             CCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcchh
Confidence            357999999999999999999999999999999998653          68999999999999999999999988653

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.76  E-value=1.5e-20  Score=131.83  Aligned_cols=65  Identities=22%  Similarity=0.260  Sum_probs=61.5

Q ss_pred             ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521           52 GGSLYEVLRVEPTATI--SEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLV  116 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~  116 (147)
                      ..++|+||||+++++.  ++||++||++++++|||++++.++|++|++||++|+||.+|..||.++.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            3689999999999998  9999999999999999999999999999999999999999999997654

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.76  E-value=1.5e-19  Score=118.99  Aligned_cols=60  Identities=18%  Similarity=0.336  Sum_probs=56.7

Q ss_pred             ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHH
Q 042521           52 GGSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVY  111 (147)
Q Consensus        52 ~~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~Y  111 (147)
                      ..++|+||||+++  ++.++||++||++++++|||++++.++|++|++||++|+|+..|..+
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~   71 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRM   71 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3589999999999  99999999999999999999999999999999999999999988763

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.76  E-value=1.1e-18  Score=131.82  Aligned_cols=68  Identities=37%  Similarity=0.520  Sum_probs=62.4

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR  120 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~  120 (147)
                      .|||+||||+++++.++||++||++++++|||+++.    .++|+.|++||++|+||.+|..||.++.....
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~   73 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   73 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence            489999999999999999999999999999999863    56899999999999999999999999876544

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=3.7e-19  Score=119.68  Aligned_cols=58  Identities=29%  Similarity=0.428  Sum_probs=53.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHH
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARA  109 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~  109 (147)
                      ..|||+||||+++++.++||++|+++++++|||++.+   .++|++|++||++|+|+.+|.
T Consensus        26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence            4799999999999999999999999999999999843   678999999999999998763

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.75  E-value=7.8e-20  Score=136.59  Aligned_cols=67  Identities=22%  Similarity=0.261  Sum_probs=60.1

Q ss_pred             ccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           52 GGSLYEVLRVEPTAT--ISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as--~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      ..++|+||||+++++  .++||+|||++++++|||+++++++|++|++||++|+||.+|..||+++...
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~G~~w   78 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFW   78 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGGGGCC
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhccCCcc
Confidence            469999999999998  6999999999999999999999999999999999999999999999998633

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.73  E-value=1.6e-18  Score=129.33  Aligned_cols=66  Identities=26%  Similarity=0.458  Sum_probs=60.4

Q ss_pred             cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCCh---------HHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           53 GSLYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGNG---------RDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        53 ~~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~---------~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      +|||+||||++++  +..+||++|+++++++|||++++.         +.|..|++||+||+||.+|..||..+.+.
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~   77 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGF   77 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTC
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCC
Confidence            3799999999999  999999999999999999997652         47999999999999999999999998744

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.72  E-value=4.9e-18  Score=130.14  Aligned_cols=70  Identities=21%  Similarity=0.492  Sum_probs=61.5

Q ss_pred             CCCccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           49 PGTGGSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        49 ~~~~~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      +....|||+||||+++  ++..+||++||++++++|||++++         .++|+.|++||+||+||.+|..||..+.+
T Consensus        39 ~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G  118 (207)
T 3bvo_A           39 PDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHG  118 (207)
T ss_dssp             CCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence            3346799999999986  789999999999999999999764         24689999999999999999999988764


Q ss_pred             c
Q 042521          118 R  118 (147)
Q Consensus       118 ~  118 (147)
                      .
T Consensus       119 ~  119 (207)
T 3bvo_A          119 I  119 (207)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.3e-18  Score=111.05  Aligned_cols=57  Identities=21%  Similarity=0.242  Sum_probs=53.1

Q ss_pred             ccCcccccccCC-CCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHH
Q 042521           52 GGSLYEVLRVEP-TATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTAR  108 (147)
Q Consensus        52 ~~~~Y~iLgv~~-~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R  108 (147)
                      ..++|+||||++ +++.++||++|+++++++|||++++.+.|++|++||++|+++..|
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence            358999999999 799999999999999999999999999999999999999987644

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.69  E-value=2e-18  Score=140.42  Aligned_cols=66  Identities=41%  Similarity=0.640  Sum_probs=0.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++|+.++||+|||++++++|||++++   .++|++|++||++|+||.+|..||+++..
T Consensus        27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   95 (329)
T 3lz8_A           27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH   95 (329)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence            4699999999999999999999999999999998764   57899999999999999999999998544

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.68  E-value=1.7e-17  Score=124.75  Aligned_cols=68  Identities=28%  Similarity=0.500  Sum_probs=61.4

Q ss_pred             CCccCccccc------ccCC-CCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHcCCchHHHHHhhhh-hc
Q 042521           50 GTGGSLYEVL------RVEP-TATISEIKTAYRSLAKVYHPDLSG-NGRDFIEIHNAYETLSDPTARAVYDMSL-VG  117 (147)
Q Consensus        50 ~~~~~~Y~iL------gv~~-~as~~eIk~ayr~l~~~~HPDk~~-~~~~~~~I~~Ay~vL~d~~~R~~YD~~~-~~  117 (147)
                      ....|||+||      |+++ +++..+||++||++++++|||+++ +.+.|..|++||++|+||.+|..||..+ .+
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l~~g   84 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRN   84 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHHHhC
Confidence            3457999999      4665 899999999999999999999987 5788999999999999999999999998 44

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.68  E-value=6.7e-18  Score=113.29  Aligned_cols=62  Identities=19%  Similarity=0.151  Sum_probs=55.1

Q ss_pred             CCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHH
Q 042521           47 TAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTAR  108 (147)
Q Consensus        47 ~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R  108 (147)
                      ..+....++|+||||+++++.++||++|+++++++|||++++     .++|++|++||++|+|...|
T Consensus        10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            334456799999999999999999999999999999999886     46899999999999988655

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.63  E-value=3e-17  Score=123.32  Aligned_cols=59  Identities=20%  Similarity=0.419  Sum_probs=54.5

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchHHHHH
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSDPTARAVY  111 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~I~~Ay~vL~d~~~R~~Y  111 (147)
                      .++|+||||+++++.++||++||++++++|||++..       .+.|+.|++||++|+|+.+|..|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            699999999999999999999999999999999754       35899999999999999998766

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.63  E-value=7.7e-17  Score=111.56  Aligned_cols=70  Identities=13%  Similarity=0.200  Sum_probs=55.3

Q ss_pred             CCcccccccCCCCCCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHHcC
Q 042521           35 RSPRAVSVEMPVTAPGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----------GRDFIEIHNAYETLS  103 (147)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----------~~~~~~I~~Ay~vL~  103 (147)
                      ..++.+.......- ....+||+|||++. ++.++||++||++++++|||++++           .++|+.|++||++|+
T Consensus        24 ~~ir~lL~~l~~~l-~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLs  101 (106)
T 3ag7_A           24 GNIRSLLSTLQYIL-WSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFN  101 (106)
T ss_dssp             TCHHHHHTTGGGTS-CTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh-cccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHc
Confidence            34666555522211 12479999999996 999999999999999999999642           467999999999999


Q ss_pred             Cch
Q 042521          104 DPT  106 (147)
Q Consensus       104 d~~  106 (147)
                      |+.
T Consensus       102 d~~  104 (106)
T 3ag7_A          102 TLG  104 (106)
T ss_dssp             TTC
T ss_pred             Ccc
Confidence            985

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.60  E-value=1.6e-16  Score=107.33  Aligned_cols=52  Identities=19%  Similarity=0.354  Sum_probs=47.6

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCC
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSD  104 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~I~~Ay~vL~d  104 (147)
                      .++|++|||++.++.++||+|||++++++|||++++       .+.|+.|++||++|.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999764       3479999999999974

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.56  E-value=2.8e-16  Score=138.50  Aligned_cols=72  Identities=35%  Similarity=0.478  Sum_probs=40.8

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhcccC
Q 042521           49 PGTGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVGRRR  120 (147)
Q Consensus        49 ~~~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~~~  120 (147)
                      .....|||+||||+++|+.++||+|||++++++|||+++.    .++|++|++||++|+||.+|..||+++..+..
T Consensus        17 ~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~   92 (780)
T 3apo_A           17 GRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   92 (780)
T ss_dssp             ------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC------
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccc
Confidence            3446799999999999999999999999999999999853    56899999999999999999999999875544

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.22  E-value=7.9e-12  Score=79.09  Aligned_cols=52  Identities=17%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             CcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCc
Q 042521           54 SLYEVLRVEPT---ATISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDP  105 (147)
Q Consensus        54 ~~Y~iLgv~~~---as~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~  105 (147)
                      ..|.||||+++   ++.++|+++|++|+..+|||++++......|++|+++|...
T Consensus         5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            56899999999   99999999999999999999999999999999999999643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.06  E-value=9.3e-11  Score=94.04  Aligned_cols=61  Identities=43%  Similarity=0.614  Sum_probs=52.4

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHcCCchHHHHHhh
Q 042521           53 GSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNG-------RDFIEIHNAYETLSDPTARAVYDM  113 (147)
Q Consensus        53 ~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-------~~~~~I~~Ay~vL~d~~~R~~YD~  113 (147)
                      .++|++||+...++.++|+++|+++++++|||+.+..       +.|+.|++||++|+|+++|..||+
T Consensus       382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            4899999999999999999999999999999998764       379999999999999999999996

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=90.63  E-value=0.17  Score=43.60  Aligned_cols=46  Identities=20%  Similarity=0.181  Sum_probs=35.8

Q ss_pred             ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 042521           52 GGSLYEVLRVEPTATI--SEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYET  101 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~--~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~v  101 (147)
                      ..+||.+||++-+...  .+|+++||++++..+++    .+++..|..|+.|
T Consensus       628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v  675 (681)
T 2pzi_A          628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV  675 (681)
T ss_dssp             CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred             CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence            3459999999776655  67999999999966554    5678888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-17
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	6e-17
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	1e-15
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	2e-15
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	1e-14
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	6e-13
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	4e-11
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	2e-10

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 70.8 bits (173), Expect = 1e-17
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 54  SLYEVLRVEPTATIS--EIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVY 111
            L E+L++          ++ AY+  + + HPD  G+     E+++ + T          
Sbjct: 12  RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRM 71

Query: 112 DM 113
           ++
Sbjct: 72  NL 73

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 68.5 bits (167), Expect = 6e-17
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 56  YEVLRVEPTATIS--EIKTAYRSLAKVYHPDLSGNGRD---------FIEIHNAYETLSD 104
           + +  +     +    +   ++ L + YHPD   +G              I+ A++TL  
Sbjct: 4   FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 105 PTARAVYDMSLVG 117
           P  RA Y +SL G
Sbjct: 64  PLMRAEYLLSLHG 76

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.9 bits (160), Expect = 1e-15
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 10/72 (13%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----------FIEIHNAYETLSDP 105
           Y +L  +P+A +S++K  Y+ L  +YHPD                 FIEI  A++ L + 
Sbjct: 19  YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 106 TARAVYDMSLVG 117
             +  YD+   G
Sbjct: 79  ETKKKYDLQRSG 90

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.0 bits (158), Expect = 2e-15
 Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 52  GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSD 104
           G + ++ + +    T  ++K  YR    V HPD +            F+E+++A+    +
Sbjct: 32  GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFEN 91

Query: 105 PTARAVY 111
              + +Y
Sbjct: 92  QGQKPLY 98

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 62.3 bits (151), Expect = 1e-14
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 55  LYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRD----FIEIHNAYETLSDPTARAV 110
            YE+L V  TA   EI+ AY+ LA  YHPD +   ++    F EI  AYE L+D   RA 
Sbjct: 5   YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64

Query: 111 YDM 113
           YD 
Sbjct: 65  YDQ 67

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 59.4 bits (143), Expect = 6e-13
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 55  LYEVLRVEPTATIS--EIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYD 112
           L ++L +E +A  +   ++ AY    K +HPD  G+     +++  Y+ + D    A   
Sbjct: 10  LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 69

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 4e-11
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 55  LYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDFIE-----IHNAYETLSDPTARA 109
           +  V+        SE K   R L   +HPD +    D        + N    L     +A
Sbjct: 18  VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QA 74

Query: 110 VYDMSLVGRRRTTRT 124
             D +    R + RT
Sbjct: 75  FLDQN--ADRASRRT 87

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 2e-10
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 56  YEVLRVEPTATISEIKTAYRSLAKVYHPDLSGNGRDF---IEIHNAYETLSDPTARAVYD 112
           Y+ L +   A+  EIK AYR  A  YHPD +          EI  AY+ LSDP  R ++D
Sbjct: 6   YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65

Query: 113 M 113
            
Sbjct: 66  R 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.89
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.84
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.83
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.79
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.76
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.64
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.63
d2b7ea1	56	Pre-mRNA-processing protein PRP40 {Baker's yeast (	87.61

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=3e-23  Score=134.03  Aligned_cols=66  Identities=42%  Similarity=0.603  Sum_probs=61.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      .+|||+||||+++++.++||++|+++++++|||++.+    .+.|..|++||+||+||.+|..||+++..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            4699999999999999999999999999999999865    35699999999999999999999999754

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.5e-22  Score=129.45  Aligned_cols=67  Identities=39%  Similarity=0.571  Sum_probs=62.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHcCCchHHHHHhhhhhcc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN---GRDFIEIHNAYETLSDPTARAVYDMSLVGR  118 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~---~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~~  118 (147)
                      .+|||+||||+++++.++|+++|+++++++|||++..   .+.|..|++||+||+||.+|..||+++..+
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~   71 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEG   71 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGG
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhh
Confidence            3699999999999999999999999999999999776   467999999999999999999999987654

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.84  E-value=5.4e-23  Score=142.53  Aligned_cols=66  Identities=23%  Similarity=0.293  Sum_probs=61.8

Q ss_pred             ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..+||+||||+++|  +.++||+||++|++++|||++++.++|++|++||+||+|+.+|..||..+..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            46899999999998  7889999999999999999999999999999999999999999999987643

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.2e-21  Score=131.42  Aligned_cols=66  Identities=32%  Similarity=0.644  Sum_probs=60.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN----------GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~----------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      ..|||+||||+++++.++||++|+++++++|||++..          .+.|+.|++||+||+||.+|..||..+.+
T Consensus        15 ~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~   90 (94)
T d1wjza_          15 KKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             CSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             ccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCC
Confidence            4699999999999999999999999999999999764          24699999999999999999999998653

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.79  E-value=6.2e-21  Score=124.12  Aligned_cols=64  Identities=17%  Similarity=0.311  Sum_probs=60.5

Q ss_pred             ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHcCCchHHHHHhhhh
Q 042521           52 GGSLYEVLRVEPTA--TISEIKTAYRSLAKVYHPDLSGNGRDFIEIHNAYETLSDPTARAVYDMSL  115 (147)
Q Consensus        52 ~~~~Y~iLgv~~~a--s~~eIk~ayr~l~~~~HPDk~~~~~~~~~I~~Ay~vL~d~~~R~~YD~~~  115 (147)
                      ..++|+||||++++  +.++||+||+++++++|||+++++++|++|++||++|+|+.+|..||...
T Consensus        10 ~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_          10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            46899999999987  99999999999999999999999999999999999999999999998654

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=1.9e-19  Score=116.05  Aligned_cols=65  Identities=25%  Similarity=0.435  Sum_probs=57.0

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHcCCchHHHHHhhhhhc
Q 042521           53 GSLYEVLRVEPT--ATISEIKTAYRSLAKVYHPDLSGN---------GRDFIEIHNAYETLSDPTARAVYDMSLVG  117 (147)
Q Consensus        53 ~~~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~~---------~~~~~~I~~Ay~vL~d~~~R~~YD~~~~~  117 (147)
                      .|||+||||++.  ++.++||++|+++++.+|||+...         .+.|..|++||+||+||.+|..|+..+.+
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~g   76 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG   76 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence            389999999985  458999999999999999998653         24588999999999999999999988753

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.2e-17  Score=108.33  Aligned_cols=63  Identities=22%  Similarity=0.203  Sum_probs=54.3

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHcCCchHHHHHhhhhh
Q 042521           51 TGGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-----GRDFIEIHNAYETLSDPTARAVYDMSLV  116 (147)
Q Consensus        51 ~~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-----~~~~~~I~~Ay~vL~d~~~R~~YD~~~~  116 (147)
                      .-.++|+||||..+++.++||+||+++++++|||++++     .++|+.|++||++|++   +..||....
T Consensus        14 ~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~~   81 (88)
T d1iura_          14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNAD   81 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSSS
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccch
Confidence            34799999999999999999999999999999999875     4569999999999964   556665554

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=1.3e-17  Score=112.32  Aligned_cols=60  Identities=22%  Similarity=0.449  Sum_probs=54.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHcCCchHHHHH
Q 042521           52 GGSLYEVLRVEPTATISEIKTAYRSLAKVYHPDLSGN-------GRDFIEIHNAYETLSDPTARAVY  111 (147)
Q Consensus        52 ~~~~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-------~~~~~~I~~Ay~vL~d~~~R~~Y  111 (147)
                      ..++|++|||...++.++||++|+++++.+|||++.+       .+.|+.|++||++|+||.+|+.|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            3578999999999999999999999999999998664       34699999999999999999876

>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Pre-mRNA-processing protein PRP40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.61  E-value=0.8  Score=25.94  Aligned_cols=49  Identities=18%  Similarity=0.281  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHhCCCCCCC-hHHHHHH-H--HHHHHc-CCc-hHHHHHhhhhhc
Q 042521           69 EIKTAYRSLAKVYHPDLSGN-GRDFIEI-H--NAYETL-SDP-TARAVYDMSLVG  117 (147)
Q Consensus        69 eIk~ayr~l~~~~HPDk~~~-~~~~~~I-~--~Ay~vL-~d~-~~R~~YD~~~~~  117 (147)
                      |.+++|+++.+..+-+-.-. ++.+..| .  .-|..| .|| +++..||.++..
T Consensus         1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y~~~   55 (56)
T d2b7ea1           1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLSN   55 (56)
T ss_dssp             HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHHhhc
Confidence            46889999999886665555 4455644 2  689999 577 799999999864