Citrus Sinensis ID: 042546
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 671 | 2.2.26 [Sep-21-2011] | |||||||
| Q9M891 | 665 | Pentatricopeptide repeat- | yes | no | 0.946 | 0.954 | 0.507 | 0.0 | |
| Q8LPF1 | 668 | Pentatricopeptide repeat- | no | no | 0.961 | 0.965 | 0.496 | 0.0 | |
| Q9STK5 | 621 | Pentatricopeptide repeat- | no | no | 0.806 | 0.871 | 0.327 | 7e-85 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.588 | 0.453 | 0.223 | 1e-16 | |
| Q9LZP3 | 599 | Pentatricopeptide repeat- | no | no | 0.681 | 0.762 | 0.229 | 1e-14 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.524 | 0.482 | 0.240 | 2e-14 | |
| Q9LEQ7 | 598 | Pentatricopeptide repeat- | no | no | 0.608 | 0.682 | 0.223 | 5e-14 | |
| Q3EAF8 | 599 | Pentatricopeptide repeat- | no | no | 0.681 | 0.762 | 0.225 | 1e-13 | |
| Q9C9A2 | 510 | Pentatricopeptide repeat- | no | no | 0.606 | 0.798 | 0.238 | 3e-13 | |
| Q9ZUU3 | 757 | Pentatricopeptide repeat- | no | no | 0.533 | 0.472 | 0.217 | 5e-13 |
| >sp|Q9M891|PP208_ARATH Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidopsis thaliana GN=At3g02490 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/672 (50%), Positives = 477/672 (70%), Gaps = 37/672 (5%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MR+QWR LLFR+Y S F FQV N S + SS L + RF
Sbjct: 1 MRYQWRSLLFRSYRSSPRPFLSHHSRFQVISN-------STRSFSSFL-------HERFG 46
Query: 61 -RLPICYSRLINLIDPKNPNFRNPMICS----YSSEPAMEQKESDFTVVSDIFYKFSDVN 115
+ C L R+P+ S +SSE A+E+K TVV D+F + + +
Sbjct: 47 VQQRQCLFAL-----------RSPLASSVSRRFSSESAIEEKLPAETVVIDVFSRLNGKD 95
Query: 116 DISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVG 175
+I+K+L+ + VV +HE+ L+VL+ LESSPD A RFF W LE ++LSSK+YN MLRI G
Sbjct: 96 EITKELDSNDVVISHELALRVLRELESSPDVAGRFFKWGLEAYPQKLSSKSYNTMLRIFG 155
Query: 176 VHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIE 235
V+GLV EFW LVD MKKKG+GV+++VR+++ +KF+K+GLE+DLE+LK +FA+GS+DNS++
Sbjct: 156 VNGLVDEFWRLVDDMKKKGHGVSANVRDRVGDKFKKDGLENDLERLKELFASGSMDNSVD 215
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
KV +R+CK+V ++WG DVE+QLRDL + F +D+VK V++KL +P+KAL+FFRW +ESG
Sbjct: 216 KVCNRVCKIVMKEVWGADVEKQLRDLKLEFKSDVVKMVLEKLDVDPRKALLFFRWIDESG 275
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
KHDE +YNAMA VLG+E +DRF +++E+RS GYEMEMET V+V RF + M+KEA
Sbjct: 276 SFKHDEKTYNAMARVLGKEKFLDRFQHMIEEIRSAGYEMEMETYVRVSARFCQTKMIKEA 335
Query: 356 VDLYEFAMA--CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413
V+L+EFAMA N P+ +CC+ LL+KIV +K+LDM LF++ ++ + NGNV+ D ML
Sbjct: 336 VELFEFAMAGSISNTPTPHCCSLLLKKIVTAKKLDMDLFTRTLKAYTGNGNVVPDVMLQH 395
Query: 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473
VLK+L SV R G+ N++LKAM EGG++ S +++S IA LS GKKDEANE ++ MEASG
Sbjct: 396 VLKSLRSVDRFGQSNEVLKAMNEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEASG 455
Query: 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533
+ + DK SL++GHC A DL++A++CF+KM+ KEG S+AGYA + LV YC+ +A D
Sbjct: 456 NHLDDKAMASLVEGHCDAKDLEEASECFKKMIGKEGVSYAGYAFEKLVLAYCNSFQARDV 515
Query: 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLCLMKDHGFPPFVDPF 588
K V++ LKPWH+TY+ +++NLL+++ GF++ALSLL +M++HGFPPFVDPF
Sbjct: 516 YKLFSELVKQNQLKPWHSTYKIMVRNLLMKKVARDGGFEEALSLLPMMRNHGFPPFVDPF 575
Query: 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRN 648
+ Y+S SGTS +A AFLK +TSK+FPS S+VL +F A ++ RHSEAQDLLS P Y+R
Sbjct: 576 MDYLSNSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYIRR 635
Query: 649 HADVLNLLYSKK 660
+A+VL L + K
Sbjct: 636 NAEVLELFNTMK 647
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPF1|PP387_ARATH Pentatricopeptide repeat-containing protein At5g15980, mitochondrial OS=Arabidopsis thaliana GN=At5g15980 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/669 (49%), Positives = 458/669 (68%), Gaps = 24/669 (3%)
Query: 1 MRHQ-WRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRF 59
MR+Q WR +L R+Y RS L + S QV + + +H L S R
Sbjct: 1 MRYQQWRLMLLRSYHRSHLPYL--SPCSQVTSISSRSFSSFIHPGIGALQQSEQLCPLRS 58
Query: 60 SRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISK 119
P+ S N + S+SSEPA+E+K S V DIF + S ++I K
Sbjct: 59 ---PMTSS----------GNLVKSVGRSFSSEPAVEEKSSAEATVIDIFSRLSGEDEIRK 105
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
+LE SGVV + ++ LKVL+ LES+PD A+ FF W+ E E LSSK YN+MLRI+G +GL
Sbjct: 106 ELESSGVVISQDLALKVLRKLESNPDVAKSFFQWIKEASPEELSSKNYNMMLRILGGNGL 165
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVAS 239
V EFWGLVDVMKKKG+G++++VR+K+ +KF+K+GLESDL +L+ +F + +DNS E V
Sbjct: 166 VDEFWGLVDVMKKKGHGLSANVRDKVGDKFQKDGLESDLLRLRKLFTSDCLDNSAENVCD 225
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
R+CK+V + WGDDVE+++RDLNV F +DLVK +V++L EP+KAL+FFRW +ES KH
Sbjct: 226 RVCKIVMKEEWGDDVEKRVRDLNVEFKSDLVKMIVERLDVEPRKALLFFRWIDESDLFKH 285
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
DE +YNAMA VLG+E +DRF ++ EMRS GYE+E+ET V+V RF + ++KEAVDL+
Sbjct: 286 DEKTYNAMARVLGKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEAVDLF 345
Query: 360 EFAMA---CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416
E AMA N P+ +C LL+KIV +K LDM LFS+ V+V+ +NGN LTD++L SVLK
Sbjct: 346 EIAMAGSSSSNNPTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTDSLLKSVLK 405
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
+L SV R+ + N++LK M+ GG++ S +M+S IA LS GKKDEA+EF+D ME+SG+++
Sbjct: 406 SLRSVDRVEQSNELLKEMKRGGYVPSGDMQSMIASSLSRKGKKDEADEFVDFMESSGNNL 465
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
DK SL++G+C +G+LD+A CF+KMV G S+A Y+ + LV YC+KN+ DA K
Sbjct: 466 DDKAMASLVEGYCDSGNLDEALVCFEKMVGNTGVSYADYSFEKLVLAYCNKNQVRDAYKL 525
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLCLMKDHGFPPFVDPFIKY 591
+ V + LKP H+TY+ L+ NLL ++ GF++ALSLL +MKDHGFPPF+DPF+ Y
Sbjct: 526 LSAQVTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEALSLLPIMKDHGFPPFIDPFMSY 585
Query: 592 VSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHAD 651
S +G S +A+ FLK MTS FP +SVVL +F ++ RHSEAQDLLS CP Y+RN+ D
Sbjct: 586 FSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKSARHSEAQDLLSLCPNYIRNNPD 645
Query: 652 VLNLLYSKK 660
VL L + K
Sbjct: 646 VLELFNTMK 654
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9STK5|PP269_ARATH Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana GN=At3g48250 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 315 bits (807), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 180/549 (32%), Positives = 293/549 (53%), Gaps = 8/549 (1%)
Query: 115 NDISKQLELS----GVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLM 170
ND SK++E + THE + VL+ LE P++A F +WVL S+ Y++M
Sbjct: 70 NDWSKEVEEGLRKPDMSLTHETAIYVLRKLEKYPEKAYYFLDWVLRDSGLSPSTPLYSIM 129
Query: 171 LRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSI 230
LRI+ ++ FW + MK+ G+ + + + KE ++D + +
Sbjct: 130 LRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKADAVAVAHFYERMLK 189
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
+N++ VA + VV W +VER+L+++ + S++ V V+ +L + P KAL FF W
Sbjct: 190 ENAMSVVAGEVSAVVTKGDWSCEVERELQEMKLVLSDNFVIRVLKELREHPLKALAFFHW 249
Query: 291 AEESGFV---KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS 347
G +H +YNA VL R + + FW V+DEM++ GY+M+++T +KV +F
Sbjct: 250 VGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAGYDMDLDTYIKVSRQFQ 309
Query: 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLT 407
+ M+ E V LYE+ M KPS+ C+ LLR + S D+ L +V R + G L+
Sbjct: 310 KSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRVSRKYESTGKSLS 369
Query: 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD 467
A+ + + ++L SVGR E +I KAM G+ + S++ F L A + +EA +D
Sbjct: 370 KAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVLD 429
Query: 468 HMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527
MEA G K W LI+GHC +LDKA CF M+EK G +D+L++ +
Sbjct: 430 QMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEK-GFDIDSNLLDVLIDGFVIH 488
Query: 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP 587
N+ A F+ V+ ++KPW +TY+ LI LL + ++AL LL +MK +P + +
Sbjct: 489 NKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMMKKQNYPAYAEA 548
Query: 588 FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647
F Y++K GT +DA FL ++SK PS + + AF++ R ++A++LL CP + +
Sbjct: 549 FDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAKNLLFICPHHFK 608
Query: 648 NHADVLNLL 656
H + L
Sbjct: 609 THPKISELF 617
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 90/403 (22%), Positives = 167/403 (41%), Gaps = 8/403 (1%)
Query: 236 KVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESG 295
+ + IC V+ + WG E L L+ + V V+ +L D +A+ +FRW E
Sbjct: 34 QTVNDICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKD-VNRAIEYFRWYERRT 92
Query: 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEA 355
+ H SYN++ V+ R D ++L EM G+ + TC++++ + N ++E
Sbjct: 93 ELPHCPESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREG 152
Query: 356 VDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415
D+ + K +P+ + T L+ DM L + + +E G T + +++
Sbjct: 153 YDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMML--TLFQQMQELGYEPTVHLFTTLI 210
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ GR+ +L M+ A + + GK D A +F +EA+G
Sbjct: 211 RGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLK 270
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ + S+I C A LD+A + F+ + EK YA + ++ Y S + +A
Sbjct: 271 PDEVTYTSMIGVLCKANRLDEAVEMFEHL-EKNRRVPCTYAYNTMIMGYGSAGKFDEAYS 329
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF--VDPFIKYVS 593
+ R P Y ++ L +AL + MK P + I +
Sbjct: 330 LLER-QRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLC 388
Query: 594 KSGTSDDAIAFLKGMT-SKRFPSMSVVLCLFAAFFQARRHSEA 635
++G D A M + FP++ V + ++++ EA
Sbjct: 389 RAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEA 431
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 117/509 (22%), Positives = 211/509 (41%), Gaps = 52/509 (10%)
Query: 159 SERLSSKTYNLMLRIVGVHGLVQEFWGLVDV-MKKKGYGV-ASHVRNKMTEKFEKEGLES 216
S + S TY+ +I H VQ L+D + +G+ +S+V + E+ E E
Sbjct: 59 SRMIHSSTYHPYRQIPLPHSSVQ----LLDASLGCRGFSSGSSNVSDGCDEEVESE---C 111
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVD 275
D ++ G+ S N E R+CKV+ D ++E L ++ + S+DL+ V++
Sbjct: 112 DNDEETGVSCVESSTNPEE--VERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLE 169
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
+ K A FF WA E HD +YN+M S+L + + VL+EM +KG +
Sbjct: 170 RFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL-LT 228
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMRLF 392
MET + F+ K+AV ++E K K ++NC L + + K+ + LF
Sbjct: 229 METFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQV-LF 287
Query: 393 SKVVRVFREN-----------------------GNVLTDAML-------NSVLKALISVG 422
K+ F N N + D L N +L+ L+
Sbjct: 288 DKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSR 347
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + K+ M+ G + + + + A E+ D M SG ++
Sbjct: 348 KKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYT 407
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
LI G LD + ++M EK G G + L+ ++ A + ++N +
Sbjct: 408 CLITGFGTQKKLDTVYELLKEMQEK-GHPPDGKTYNALIKLMANQKMPEHATR-IYNKMI 465
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSD 599
+ +++P T+ ++K+ + R ++ ++ M G P + + I+ + G S
Sbjct: 466 QNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSR 525
Query: 600 DAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628
+A +L+ M K + + FAA F
Sbjct: 526 EACRYLEEMLDKGMKTPLIDYNKFAADFH 554
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 90/374 (24%), Positives = 158/374 (42%), Gaps = 22/374 (5%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
+CK+ R D D R + V F+ + FV D+ K L G V D
Sbjct: 332 LCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVL--SDMVTSYGIVP-D 388
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
+YN++ +E + +VL +MR+KG + + + ++ F + + EA ++
Sbjct: 389 VCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLN 448
Query: 361 FAMACKNKPSV---NCCTFLLRKIVVSKQLDMRLFSKVVRVFRE---NGNVLTDAMLNSV 414
A KP+ NC ++S + V +FRE G NS+
Sbjct: 449 EMSADGLKPNTVGFNC--------LISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
+ L V + +L+ M G +A++ + + G+ EA + ++ M GS
Sbjct: 501 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 560
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
+ + + SLIKG C AG++DKA F+KM+ ++G + + + ++L+N C +A
Sbjct: 561 PLDEITYNSLIKGLCRAGEVDKARSLFEKML-RDGHAPSNISCNILINGLCRSGMVEEAV 619
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKY 591
+F V P T+ LI L +D L++ ++ G PP F + +
Sbjct: 620 EFQKEMVLRGS-TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSW 678
Query: 592 VSKSGTSDDAIAFL 605
+ K G DA L
Sbjct: 679 LCKGGFVYDACLLL 692
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 101/451 (22%), Positives = 185/451 (41%), Gaps = 43/451 (9%)
Query: 215 ESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFV 273
E D ++ G+ S N E R+CKV+ D ++E L ++ + S+DL+ V
Sbjct: 109 ECDNDEETGVSCVESSTNPEE--VERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEV 166
Query: 274 VDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
+++ K A FF WA E HD +YN+M S+L + + VL+EM +KG
Sbjct: 167 LERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL- 225
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMR 390
+ MET + F+ K+AV ++E K K ++NC L + + K+ +
Sbjct: 226 LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQV- 284
Query: 391 LFSKVVRVFREN--------------GNVLTDAML----------------NSVLKALIS 420
LF K+ F N N++ A + N +L+ L+
Sbjct: 285 LFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLR 344
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
+ + K+ M+ G + + + + A E+ D M SG +
Sbjct: 345 SMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAV 404
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ LI G LD + ++M EK G G + L+ ++ + ++N
Sbjct: 405 YTCLITGFGTQKKLDTVYELLKEMQEK-GHPPDGKTYNALIKLMANQKMPEHGTR-IYNK 462
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGT 597
+ + +++P T+ ++K+ V R ++ ++ M G P + + I+ + G
Sbjct: 463 MIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGK 522
Query: 598 SDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628
S +A +L+ M K + + FAA F
Sbjct: 523 SREACRYLEEMLDKGMKTPLIDYNKFAADFH 553
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 115/509 (22%), Positives = 210/509 (41%), Gaps = 52/509 (10%)
Query: 159 SERLSSKTYNLMLRIVGVHGLVQEFWGLVDV-MKKKGYGV-ASHVRNKMTEKFEKEGLES 216
S + S TY+ +I H VQ L+D + +G+ +S+V + E+ E E
Sbjct: 59 SRMIHSSTYHPYRQIPLPHSSVQ----LLDASLGCRGFSSGSSNVSDGCDEEVESE---C 111
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVD 275
D ++ G+ S N E R+CKV+ D ++E L ++ + S+DL+ V++
Sbjct: 112 DNDEETGVSCVESSTNPEE--VERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLE 169
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
+ K A FF WA E H +YN+M S+L + + VL+EM +KG +
Sbjct: 170 RFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGL-LT 228
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMRLF 392
MET + F+ K+AV ++E K K ++NC L + + K+ + LF
Sbjct: 229 METFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQV-LF 287
Query: 393 SKVVRVFREN--------------GNVLTDAML----------------NSVLKALISVG 422
K+ F N N++ A + N +L+ L+
Sbjct: 288 DKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSM 347
Query: 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482
+ + K+ M+ G + + + + A E+ D M SG ++
Sbjct: 348 KKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYT 407
Query: 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542
LI G LD + ++M EK G G + L+ ++ + ++N +
Sbjct: 408 CLITGFGTQKKLDTVYELLKEMQEK-GHPPDGKTYNALIKLMANQKMPEHGTR-IYNKMI 465
Query: 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSD 599
+ +++P T+ ++K+ V R ++ ++ M G P + + I+ + G S
Sbjct: 466 QNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSR 525
Query: 600 DAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628
+A +L+ M K + + FAA F
Sbjct: 526 EACRYLEEMLDKGMKTPLIDYNKFAADFH 554
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 101/423 (23%), Positives = 173/423 (40%), Gaps = 16/423 (3%)
Query: 221 LKGIFATGSID-----NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
L G F S++ N + A RICK++ + VE L + +V S L++ V+
Sbjct: 44 LYGSFHASSVETQVSANDASQDAERICKIL-TKFTDSKVETLLNEASVKLSPALIEEVLK 102
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
KL + AL F+WAE KH S+YNA+ LG+ W ++D+M++K +
Sbjct: 103 KLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL-LS 161
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFS 393
ET + R++ VKEA+ + K + +L + S+ + ++F
Sbjct: 162 KETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFD 221
Query: 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453
K+ + R ++ + +L +++ R+ E N + M++ GF I
Sbjct: 222 KMKKK-RFEPDIKSYTILLEGWGQELNLLRVDEVN---REMKDEGFEPDVVAYGIIINAH 277
Query: 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513
A K +EA F + ME ++ SLI G L+ A + F++ + G
Sbjct: 278 CKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFER-SKSSGFPLE 336
Query: 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL 573
+ LV YC R DA K V +R + P TY+ ++ +L+ + K+A +
Sbjct: 337 APTYNALVGAYCWSQRMEDAYKTVDE-MRLKGVGPNARTYDIILHHLIRMQRSKEAYEVY 395
Query: 574 CLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRH 632
M + ++ D AI M K P M + L A +
Sbjct: 396 QTMSCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKL 455
Query: 633 SEA 635
EA
Sbjct: 456 DEA 458
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 88/405 (21%), Positives = 164/405 (40%), Gaps = 47/405 (11%)
Query: 216 SDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
++ L+ F G N EK+ IC+++ + W ++ +RDL + + LV V+
Sbjct: 67 TETRPLRERFQRGKRQNH-EKLEDTICRMMDNRAWTTRLQNSIRDLVPEWDHSLVYNVLH 125
Query: 276 KLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335
+ + AL FFRW E SG ++HD ++ M +LG ++ +L +M KG +
Sbjct: 126 G-AKKLEHALQFFRWTERSGLIRHDRDTHMKMIKMLGEVSKLNHARCILLDMPEKGVPWD 184
Query: 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKV 395
+ V ++ + + +V+E+V K+
Sbjct: 185 EDMFVVLIESYGKAGIVQESV-------------------------------------KI 207
Query: 396 VRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455
+ ++ G T NS+ K ++ GR + M G + + + + +
Sbjct: 208 FQKMKDLGVERTIKSYNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFL 267
Query: 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV-EKEGTSHAG 514
+ + + A F + M+ G D + ++I G C +D+A F +M K G S
Sbjct: 268 SLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVS 327
Query: 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLL- 573
Y ++ Y + +R D + +R ++P TTY L+ L +A ++L
Sbjct: 328 YTT--MIKGYLAVDRVDDGLRIFEE-MRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILK 384
Query: 574 CLMKDHGFPPFVDPFIKYV---SKSGTSDDAIAFLKGMTSKRFPS 615
+M H P F+K + SK+G A LK M + P+
Sbjct: 385 NMMAKHIAPKDNSIFLKLLVSQSKAGDMAAATEVLKAMATLNVPA 429
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 671 | ||||||
| 224127560 | 658 | predicted protein [Populus trichocarpa] | 0.974 | 0.993 | 0.589 | 0.0 | |
| 225451887 | 650 | PREDICTED: pentatricopeptide repeat-cont | 0.967 | 0.998 | 0.584 | 0.0 | |
| 147775369 | 650 | hypothetical protein VITISV_003195 [Viti | 0.967 | 0.998 | 0.581 | 0.0 | |
| 224077560 | 616 | predicted protein [Populus trichocarpa] | 0.871 | 0.949 | 0.619 | 0.0 | |
| 224077566 | 646 | predicted protein [Populus trichocarpa] | 0.947 | 0.984 | 0.565 | 0.0 | |
| 356568865 | 629 | PREDICTED: pentatricopeptide repeat-cont | 0.932 | 0.995 | 0.534 | 0.0 | |
| 90657573 | 666 | hypothetical protein [Cleome spinosa] | 0.955 | 0.962 | 0.515 | 0.0 | |
| 449447687 | 656 | PREDICTED: pentatricopeptide repeat-cont | 0.853 | 0.873 | 0.580 | 0.0 | |
| 449482262 | 656 | PREDICTED: pentatricopeptide repeat-cont | 0.853 | 0.873 | 0.578 | 0.0 | |
| 297828702 | 667 | pentatricopeptide repeat-containing prot | 0.956 | 0.962 | 0.527 | 0.0 |
| >gi|224127560|ref|XP_002329308.1| predicted protein [Populus trichocarpa] gi|222870762|gb|EEF07893.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/674 (58%), Positives = 495/674 (73%), Gaps = 20/674 (2%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MRH WR LL+R+YPRSSL+F S +FQV L H S + S FS
Sbjct: 1 MRHSWRILLYRSYPRSSLKF---SNHFQV-----LQQHSPPPLRSLSSLHTLSLQDSHFS 52
Query: 61 RLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESD---FTVVSDIFYKFSDVNDI 117
+ P ++ I KNP F + SSE ++ + D +V D+F KF D +DI
Sbjct: 53 KTPQKHN-----IYNKNPLFARNL----SSEASLVEPTKDPDLVLLVCDVFTKFDDSDDI 103
Query: 118 SKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVH 177
+K+LELS VV +H++VLKVLK+L S P A+RFF+WVL+K+SERLSSK+YN ML I+GV+
Sbjct: 104 NKELELSSVVISHDLVLKVLKSLGSKPGVAKRFFDWVLKKDSERLSSKSYNWMLGILGVN 163
Query: 178 GLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKV 237
GLV EFW LVD MK KGYGV+ R+++ EKFE EGL+ D+EKLKG+FATGSIDNS+EK+
Sbjct: 164 GLVAEFWELVDKMKTKGYGVSGVTRDRVLEKFENEGLKGDIEKLKGVFATGSIDNSVEKI 223
Query: 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFV 297
R+ ++VRS WG+DVE +++ L+ FS+ LVK V++ L EP KALIFFRW EES
Sbjct: 224 GLRMSRIVRSKFWGEDVEGEIKGLSAEFSSGLVKIVLEHLAIEPMKALIFFRWVEESELC 283
Query: 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357
KHD SYNAMA VLG +DCIDRFWKV+DEMRS G+EME+ET VL F R M+KEAVD
Sbjct: 284 KHDGGSYNAMARVLGSKDCIDRFWKVIDEMRSNGFEMEVETFDTVLAWFMRRKMIKEAVD 343
Query: 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417
LYEFAM NKPS CT+LLR IVV KQLD+ LFS++V+VF ENGNVLTD+ML++VLKA
Sbjct: 344 LYEFAMNGANKPSSKYCTYLLRNIVVCKQLDIGLFSRIVKVFTENGNVLTDSMLDAVLKA 403
Query: 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477
L SVGR ECNKIL+ M GF+AS N++ KIAF L+SAGK EA EF+DHME+SGSD+
Sbjct: 404 LRSVGRFKECNKILREMMVAGFVASGNLQRKIAFGLTSAGKNYEAIEFVDHMESSGSDLD 463
Query: 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537
+K W SLI+GHCV+GDL+KA+DCF+KMVEK+G + AGYA++LLVN YC KNRA DAC +
Sbjct: 464 NKAWASLIEGHCVSGDLEKASDCFKKMVEKKGVTGAGYAVELLVNAYCLKNRAGDACNLL 523
Query: 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT 597
+ V + L PW TTY+ LI LL Q GFKDAL+LL LM+ HG PP++DPF ++VSKSGT
Sbjct: 524 CDYVCQNQLHPWRTTYKVLISKLLAQGGFKDALNLLGLMQSHGIPPYIDPFFEFVSKSGT 583
Query: 598 SDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLY 657
DDAIAF+ MT+K+FPS+SV L LF AFF A+RHSEAQD LSKCP ++RNHADVL L
Sbjct: 584 GDDAIAFMNAMTTKKFPSISVSLRLFEAFFNAKRHSEAQDFLSKCPVFIRNHADVLTLFC 643
Query: 658 SKKSGGDSAPAVTA 671
S KS D+A A +
Sbjct: 644 SMKSSKDTAAATVS 657
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451887|ref|XP_002278999.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/669 (58%), Positives = 488/669 (72%), Gaps = 20/669 (2%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MR+QWR LL R + RS L + +F V + + ++L SS L SH
Sbjct: 1 MRNQWRLLLLRTHSRSPLSISHIFSHFPVKSDHS---SQTLRFFSSFLQGHSHH------ 51
Query: 61 RLPICYSRLINLIDPKN-PNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISK 119
C +ID NF P S+SS+ A+E K D V +DIF K ++I
Sbjct: 52 ----C------VIDSTELRNFSGPRSRSFSSDLALEDKGLDHVVFTDIFSKPKGFDEIKN 101
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
++E S +V +HE+VLKVL+NLES+P+ AR F+WVL ESERLSSK+YNLML I+G +G
Sbjct: 102 EVESSDIVVSHELVLKVLENLESNPEVARSVFDWVLRAESERLSSKSYNLMLGILGSNGF 161
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVAS 239
V EFW LV+VMKKKGYGV+ K E FEKE L SDLEKL+G+FA+GS+D+SI+K+ S
Sbjct: 162 VSEFWDLVEVMKKKGYGVSKAAYVKALENFEKEALGSDLEKLRGLFASGSVDDSIQKICS 221
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
R+ K++RS++WGD+VE QL +L VTFS DLV V++ LG EP KALIFFRW EES VKH
Sbjct: 222 RVSKIIRSEVWGDNVEGQLHNLKVTFSGDLVAMVLENLGLEPMKALIFFRWVEESDLVKH 281
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D+ +YNAM VLGREDCI+RFWKV DEMR+ GYEME+ T KV+GRF +R M+KE VDLY
Sbjct: 282 DKQTYNAMLRVLGREDCIERFWKVADEMRNAGYEMEVATYFKVVGRFYKRKMIKEVVDLY 341
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
EFAM+ NKPS+ CTFLLRKIVVSK LD+ LFS+VVR + E GN+LT +ML+++LK+L
Sbjct: 342 EFAMSGANKPSMYDCTFLLRKIVVSKVLDISLFSRVVRTYTEGGNILTKSMLDAILKSLT 401
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
SVGR GECNK+LKAMEEGG++ S M++KIAF LSSA K DEANEFM++ME S +
Sbjct: 402 SVGRFGECNKLLKAMEEGGYVVGSGMQNKIAFGLSSARKTDEANEFMNNMEDSDCRPNYR 461
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
W SLI+G+CVAGDLDKA+DCFQKMVEKEG S+AGYA ++LVN YC K R++DAC + +
Sbjct: 462 TWSSLIEGYCVAGDLDKASDCFQKMVEKEGVSYAGYAFEVLVNAYCCKGRSVDACGLLCD 521
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
+ KPWH+TY+ LI LLVQ GF+ AL+LL LMKDH FPPF+DPFI+YVS++GT D
Sbjct: 522 LASKEKFKPWHSTYKLLISKLLVQGGFQAALNLLGLMKDHEFPPFLDPFIEYVSRTGTGD 581
Query: 600 DAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSK 659
DAI FL+ MT KRFPS SV L F AFF+A RH+EAQD LSKCP Y+RNHADVLNL Y+
Sbjct: 582 DAITFLRAMTVKRFPSTSVFLQTFEAFFKAGRHNEAQDFLSKCPGYIRNHADVLNLFYTM 641
Query: 660 KSGGDSAPA 668
KSG + A
Sbjct: 642 KSGEAAMAA 650
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147775369|emb|CAN63553.1| hypothetical protein VITISV_003195 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/669 (58%), Positives = 484/669 (72%), Gaps = 20/669 (2%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MR+QWR LL R + RS L + +F V + + ++L SS L SH
Sbjct: 1 MRNQWRLLLLRTHSRSPLSISHIFSHFPVKSDHS---SQTLRFFSSFLQGHSHH------ 51
Query: 61 RLPICYSRLINLIDPKN-PNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISK 119
C +ID NF P S+SS+ A+E K D V +DIF K ++I
Sbjct: 52 ----C------VIDSTELRNFSGPRSRSFSSDLALEDKGLDHVVFTDIFSKPKGFDEIKN 101
Query: 120 QLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL 179
++E S +V +HE+VLKVL+NLES+P+ AR F+WVL ESERLSSK+YNLML I+G +G
Sbjct: 102 EVESSDIVVSHELVLKVLENLESNPEVARXVFDWVLRAESERLSSKSYNLMLGILGSNGF 161
Query: 180 VQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVAS 239
V EFW LV+VMKKKGYGV+ K E FEKE L SDLEKL+G+FA+GS+DNSI+K+ S
Sbjct: 162 VSEFWDLVEVMKKKGYGVSKAAYVKALENFEKEALGSDLEKLRGLFASGSVDNSIQKICS 221
Query: 240 RICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299
R+ K++RS++WGD+VE QL +L VTFS DLV V++ LG EP KALIFFRW EES KH
Sbjct: 222 RVSKIIRSEVWGDNVEGQLHNLKVTFSGDLVAMVLENLGLEPMKALIFFRWVEESDLXKH 281
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D+ +YNAM VLGREDCI+RFWKV DEMR+ GYEME+ T KV+GRF +R M+ E VDLY
Sbjct: 282 DKXTYNAMLRVLGREDCIERFWKVADEMRNAGYEMEVATYXKVVGRFYKRKMIXEVVDLY 341
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALI 419
EFAM+ NKPS+ CTFLLRKIVVSK LD+ LFS+VVR + E GN+LT +ML++ LK+L
Sbjct: 342 EFAMSGANKPSMYDCTFLLRKIVVSKVLDISLFSRVVRTYTEGGNILTKSMLDAXLKSLT 401
Query: 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479
SVGR GECNK+LKAMEEGG++ S M++KIAF LSSA K DEANEFM++ME S +
Sbjct: 402 SVGRFGECNKLLKAMEEGGYVVGSGMQNKIAFGLSSARKTDEANEFMNNMEDSDCRPNYR 461
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539
W SLI+G+CVAGDLDKA+DCFQKMVEKEG S+ GYA ++LVN YC K R++DAC + +
Sbjct: 462 TWSSLIEGYCVAGDLDKASDCFQKMVEKEGVSYXGYAFEVLVNAYCCKGRSVDACGLLCD 521
Query: 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599
+ KPWH+TY+ LI LLVQ GF+ AL+LL LMKDH FPPF+DPFI+YVS++GT D
Sbjct: 522 LASKEKFKPWHSTYKLLISKLLVQGGFQAALNLLGLMKDHEFPPFLDPFIEYVSRTGTGD 581
Query: 600 DAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSK 659
DAI FL+ MT KRFPS SV L F AFF+A RH+EAQD LSKCP Y+RNHADVLNL Y+
Sbjct: 582 DAITFLRAMTVKRFPSTSVFLQTFEAFFKAGRHNEAQDFLSKCPGYIRNHADVLNLFYTM 641
Query: 660 KSGGDSAPA 668
KSG + A
Sbjct: 642 KSGEAAMAA 650
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224077560|ref|XP_002305302.1| predicted protein [Populus trichocarpa] gi|222848266|gb|EEE85813.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1944), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/591 (61%), Positives = 459/591 (77%), Gaps = 6/591 (1%)
Query: 76 KNPNFRNPMIC---SYSSEPAMEQKESD---FTVVSDIFYKFSDVNDISKQLELSGVVFT 129
+ PNF N ++SSE ++ + D +V D F KF + +DISK+LEL+ VV +
Sbjct: 26 QKPNFYNKTALFARNFSSEASLVEPTKDPDHVLLVCDAFTKFDEFDDISKELELNSVVIS 85
Query: 130 HEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDV 189
H++VLKVLK+LES P+ A+RFF+WVLEK+S RLSSK+YN ML I+GV+GLV EFW LVD
Sbjct: 86 HDLVLKVLKSLESKPEVAKRFFDWVLEKDSGRLSSKSYNWMLGILGVNGLVVEFWDLVDK 145
Query: 190 MKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDI 249
MK KG+GV+ R+++ EKFEKEGL DLEKLKG+FA GS+DNS+EK+ R+ ++VR+ +
Sbjct: 146 MKIKGHGVSGVTRDRVQEKFEKEGLNDDLEKLKGVFAKGSVDNSVEKIGLRVSRIVRNKV 205
Query: 250 WGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMAS 309
WG+DVE +++ L FS+DLVK V++ L EP KALIFFRW E+S KHD SYNAMA
Sbjct: 206 WGEDVEGEIKHLCAEFSSDLVKIVLEHLVMEPVKALIFFRWVEDSELCKHDGRSYNAMAR 265
Query: 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369
VLGREDCIDRFWKV+DEMRS G+EME T VL RF R M+KEA+DLYEFAM NKP
Sbjct: 266 VLGREDCIDRFWKVIDEMRSNGFEMETGTFDTVLARFMSRKMIKEAIDLYEFAMTGANKP 325
Query: 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429
S CCT+LLRKIVV KQLDM LFS+VV +F +GNVLTDAML++VLKAL +VG+ GECNK
Sbjct: 326 SAKCCTYLLRKIVVGKQLDMGLFSRVVEIFTGHGNVLTDAMLDAVLKALTNVGKFGECNK 385
Query: 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489
+L+ M+ GF+AS N++ KIAF L+SAGK DEANEF++HME+SG D+ K W SLI+GHC
Sbjct: 386 VLREMKVAGFVASGNLQRKIAFGLTSAGKNDEANEFVNHMESSGRDLSYKAWASLIEGHC 445
Query: 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW 549
V+GDL+KA+DCF+ MVEK+G S AGYA++LLVN YC KNRA+DAC + + V + L PW
Sbjct: 446 VSGDLEKASDCFKIMVEKKGVSGAGYAVELLVNAYCLKNRAMDACNLLCDYVCQNHLCPW 505
Query: 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMT 609
TTY+ LI LLVQ FKDAL+LL LM+ HG PPF+DPF ++VSKSGT DDAIAF+ MT
Sbjct: 506 QTTYKVLISKLLVQGAFKDALNLLGLMQSHGIPPFIDPFFEFVSKSGTGDDAIAFMNAMT 565
Query: 610 SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660
+K+FPS+SV L +F AFF+A+RH EAQD LSKCP Y+RN ADVLNL SKK
Sbjct: 566 TKKFPSISVALRMFKAFFKAKRHGEAQDFLSKCPIYIRNRADVLNLFCSKK 616
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224077566|ref|XP_002305305.1| predicted protein [Populus trichocarpa] gi|222848269|gb|EEE85816.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/674 (56%), Positives = 481/674 (71%), Gaps = 38/674 (5%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MRH WR LL+R YP SSL+ S +FQV L + +L L S HT + S
Sbjct: 1 MRHSWRVLLYRKYPLSSLKI---SNHFQV-------LQQHSPSLLRSLSPSLHTLALQNS 50
Query: 61 RLPICYSRLINLIDPKNPNFRNPMIC---SYSSEPAMEQKESD---FTVVSDIFYKFSDV 114
+S + + PNF N ++SSE ++ + D +V D F KF +
Sbjct: 51 H----FSETL-----QKPNFYNKTALFARNFSSEASLVEPTKDPDHVLLVCDAFTKFDEF 101
Query: 115 NDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIV 174
+DISK+LEL+ VV +H++VLKVLK+LES P+ A+RFF+WVLEK+S RLSSK+YN ML I+
Sbjct: 102 DDISKELELNSVVISHDLVLKVLKSLESKPEVAKRFFDWVLEKDSGRLSSKSYNWMLGIL 161
Query: 175 GVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSI 234
GV+GLV EFW LVD MK KG+GV+ R+++ EKFEKEGL DLEKLKG+FA GS+DNS+
Sbjct: 162 GVNGLVVEFWDLVDKMKIKGHGVSGVTRDRVQEKFEKEGLNDDLEKLKGVFAKGSVDNSV 221
Query: 235 EKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294
EK+ R+ ++VR+ +WG+DVE +++ L FS+DLVK V++ L EP KALIFFRW E+S
Sbjct: 222 EKIGLRVSRIVRNKVWGEDVEGEIKHLCAEFSSDLVKIVLEHLVMEPVKALIFFRWVEDS 281
Query: 295 GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE 354
KHD SYNAMA VLGREDCIDRFWK T VL RF R M+KE
Sbjct: 282 ELCKHDGRSYNAMARVLGREDCIDRFWKT-------------GTFDTVLARFMSRKMIKE 328
Query: 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414
A+DLYEFAM NKPS CCT+LLRKIVV KQLDM LFS+VV +F +GNVLTDAML++V
Sbjct: 329 AIDLYEFAMTGANKPSAKCCTYLLRKIVVGKQLDMGLFSRVVEIFTGHGNVLTDAMLDAV 388
Query: 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474
LKAL +VG+ GECNK+L+ M+ GF+AS N++ KIAF L+SAGK DEANEF++HME+SG
Sbjct: 389 LKALTNVGKFGECNKVLREMKVAGFVASGNLQRKIAFGLTSAGKNDEANEFVNHMESSGR 448
Query: 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534
D+ K W SLI+GHCV+GDL+KA+DCF+ MVEK+G S AGYA++LLVN YC KN A+DAC
Sbjct: 449 DLSYKAWASLIEGHCVSGDLEKASDCFKIMVEKKGVSGAGYAVELLVNAYCLKNTAMDAC 508
Query: 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK 594
+ + V + L PW TTY+ LI LLVQ FKDAL+LL LM+ HG PPF+DPF ++VSK
Sbjct: 509 NLLCDYVCQNHLCPWQTTYKVLISKLLVQGAFKDALNLLGLMQSHGIPPFIDPFFEFVSK 568
Query: 595 SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLN 654
SGT DDAIAF+ MT+K+FPS+SV L +F AFF+A+RH EAQD LSKCP Y+RN ADVLN
Sbjct: 569 SGTGDDAIAFMNAMTTKKFPSISVALRMFKAFFKAKRHGEAQDFLSKCPIYIRNRADVLN 628
Query: 655 LLYSKKSGGDSAPA 668
L SKK D+
Sbjct: 629 LFCSKKFSNDTTAT 642
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356568865|ref|XP_003552628.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/673 (53%), Positives = 469/673 (69%), Gaps = 47/673 (6%)
Query: 1 MRHQWRFL--LFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSR 58
MRHQWR L L R+ PR +T H + SS +P R
Sbjct: 1 MRHQWRLLHHLLRSRPR-------------------ITYHSQVLPYSSSIP-------RR 34
Query: 59 FSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDIS 118
F+ N P NP+FR +SSEP + Q ++D +V+DIF K D D
Sbjct: 35 FA---------ANSTFPLNPSFRR-----FSSEPVLAQADTDHLLVADIFSKPVDSEDFK 80
Query: 119 KQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHG 178
L + V TH+ VL VL +S+ D ARRFF WV E ERLSSK YN ML ++G +G
Sbjct: 81 TLLGSNRVSITHDAVLAVLGKFDSNVDAARRFFQWVSENHPERLSSKCYNSMLCVLGTNG 140
Query: 179 LVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVA 238
V EFW LV+VMKKKGYGV+ V+ ++ E FEK G++ D+ KLKG+F DNS EK
Sbjct: 141 FVDEFWDLVNVMKKKGYGVSKGVKERVLESFEKGGMDGDVAKLKGLF-----DNSKEKNI 195
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
+ +C++VR+++WGDDVE+Q+ DLNV FS+++VK V++ L EP KALIFFRW EESG K
Sbjct: 196 AIVCRIVRNNVWGDDVEKQIEDLNVGFSSEVVKTVLESLVLEPVKALIFFRWLEESGLFK 255
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
HD +YNAMA VLGRED IDRFWK++ +MRS G+EME ET VKVLGRF +R MVK+AV+L
Sbjct: 256 HDGRTYNAMARVLGREDLIDRFWKLVGDMRSAGFEMEAETFVKVLGRFCKRRMVKDAVEL 315
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
YEFAMA NKP+V CC FLLRK+ K+LD LFS+V++VF NGNVLTD++ N+VLK+L
Sbjct: 316 YEFAMAGANKPTVQCCVFLLRKVAAGKELDTDLFSRVLKVFTGNGNVLTDSVANAVLKSL 375
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
SVGR GE NK+LK ME+ GF+A +++SKIA+RL +AG K++A+EFM+ +E SGS+
Sbjct: 376 TSVGRTGEWNKVLKEMEDCGFVAGGSLQSKIAYRLGAAGNKEQAHEFMNRIEVSGSNPYR 435
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
K W SLI+G+CVAG+LDKA + F+++VEKEG + AGY+ ++L+N+YC NRA+DA K +
Sbjct: 436 KTWESLIQGYCVAGNLDKAFESFKEIVEKEGVASAGYSFNVLMNSYCQMNRAVDASKILC 495
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTS 598
V E LKPWH+TY+ L+ LLVQ GF DAL++L LM+ HGFPPF DPFI+++SKSG+
Sbjct: 496 RLVNEKQLKPWHSTYKLLVTKLLVQGGFTDALNILGLMRTHGFPPFTDPFIEHLSKSGSG 555
Query: 599 DDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYS 658
DDA+ FLK MTSKRFPS S+ L +F AFF+ RRH EAQ+ LSKCPRY+RNHADVLNL S
Sbjct: 556 DDAVLFLKAMTSKRFPSTSMFLRMFEAFFKHRRHEEAQNFLSKCPRYIRNHADVLNLFCS 615
Query: 659 KKSGGDSAPAVTA 671
S ++ ++ A
Sbjct: 616 LNSKEAASSSMLA 628
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|90657573|gb|ABD96873.1| hypothetical protein [Cleome spinosa] | Back alignment and taxonomy information |
|---|
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/677 (51%), Positives = 475/677 (70%), Gaps = 36/677 (5%)
Query: 1 MRHQWRFLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFS 60
MRHQWR LL R+Y RS L + +S +FQV SL +LSS L +
Sbjct: 1 MRHQWRLLLHRSYRRSHLPYPSASSHFQVT-------SISLRSLSSFLRPRPGDGALEQT 53
Query: 61 RLPICYSRLINLIDPKNPNFRNPMICS----------YSSEPAMEQKESDFTVVSDIFYK 110
+ P+ ++P+ CS +SSEPA++ K SD V D+F +
Sbjct: 54 KQPLV--------------LQSPLACSVSLVKSVSRNFSSEPAIDVKPSDDVTVIDVFSR 99
Query: 111 FSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLM 170
SD ++I K L+LSG+V H++ LKVL+ L+S PD A+RFF WV E ++ +LSSK+YN+M
Sbjct: 100 LSDKDEIKKLLDLSGIVINHDLGLKVLRGLQSRPDAAKRFFQWVTEADAAKLSSKSYNMM 159
Query: 171 LRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSI 230
LRI+GV+G V EFWGLV MKKKGYGV+++VR+K+ EKF+K+GL+ DLE+LK +FA+GS+
Sbjct: 160 LRILGVNGFVDEFWGLVVDMKKKGYGVSANVRDKVGEKFQKDGLQGDLERLKELFASGSM 219
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
DNS EKV R+CK+V + W DDVE++LRDL V F ++LVK V+KL EP+KAL+FFRW
Sbjct: 220 DNSAEKVCHRVCKIVLKEEWSDDVEKRLRDLKVEFQSELVKMAVEKLDMEPRKALLFFRW 279
Query: 291 AEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350
+ESG KHDE +YNA+A VLGRE +DRF +++EMR G+EMEMET +V RF +
Sbjct: 280 IDESGLFKHDEGTYNAIARVLGREKFLDRFRNIIEEMRGAGHEMEMETYARVSARFCQTK 339
Query: 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM 410
++KEAV+L+EFAMA N P+ +CC LL+KIV +K+L+M LFS+VV+ + E+GN LTD M
Sbjct: 340 LIKEAVELFEFAMAGSNTPTPHCCILLLKKIVTAKELEMGLFSRVVKAYTESGNALTDTM 399
Query: 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470
LNSVLK++ SV R + N++LK M+EGG+I ++S IA LS GKKDEA E + ME
Sbjct: 400 LNSVLKSIRSVDRFDQSNEVLKVMKEGGYIPGGGLQSVIASGLSRKGKKDEAKELENFME 459
Query: 471 ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530
ASG+++ DK SL++GHC AG+L++A++CF+ MV KEG S+AGY + LV YC+KN+
Sbjct: 460 ASGNNLDDKALASLVEGHCYAGELEQASECFKNMVGKEGVSYAGYTFERLVLAYCNKNQT 519
Query: 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLCLMKDHGFPPFV 585
D K V+ LKPWH+TY+ L++NLL ++ GF++ALSLL +MKDHGFPPFV
Sbjct: 520 RDGYKLFVALVKGNQLKPWHSTYKILVRNLLTKKMARDGGFEEALSLLPMMKDHGFPPFV 579
Query: 586 DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
DPF+ YVS++G+ A AFLK MTSK+FPS ++V+ +F A ++ RHSEAQDLLS CP+Y
Sbjct: 580 DPFVDYVSRTGSRAQAFAFLKAMTSKKFPSTTIVIRVFEAMLKSGRHSEAQDLLSMCPKY 639
Query: 646 VRNHADVLNLLYSKKSG 662
+R HADVL L S K G
Sbjct: 640 IRGHADVLELFNSMKPG 656
|
Source: Cleome spinosa Species: Cleome spinosa Genus: Cleome Family: Cleomaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447687|ref|XP_004141599.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/574 (58%), Positives = 446/574 (77%), Gaps = 1/574 (0%)
Query: 87 SYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDE 146
++SSEPA EQ ESD V+ DI K DV++I K LE +GVV +H++VL+VL LES+PD+
Sbjct: 72 TFSSEPAAEQ-ESDHAVIVDILSKSRDVDEIRKGLESNGVVISHDLVLEVLGQLESNPDD 130
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT 206
A RFF+WV E+LSSK++NLML I+GV+GLV++FW L MKKKGYG++ VR+K+
Sbjct: 131 AIRFFDWVSGDYGEKLSSKSFNLMLGILGVNGLVKKFWDLNCDMKKKGYGMSKTVRDKVL 190
Query: 207 EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFS 266
EKF+K+GL+S+ EKL+ +FA+GS D S + + S + +++R+++WG+DVE+QLRD++V+FS
Sbjct: 191 EKFDKDGLKSEAEKLRDMFASGSTDKSPDNIGSNVSRLIRTNLWGEDVEQQLRDMSVSFS 250
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
+D+VK +++ L +P KA IFF W +ESG KHDE +YNAMA+VLGREDCIDRFWKV+DE
Sbjct: 251 SDMVKMILEDLSTDPAKAYIFFLWIDESGMFKHDEQTYNAMATVLGREDCIDRFWKVVDE 310
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386
MRS+GY+MEMET KVLGRF +R M++EAV+LY FAM+ +KPS +C TFLL+KI VS+Q
Sbjct: 311 MRSQGYKMEMETFTKVLGRFCKRRMIEEAVNLYVFAMSVGDKPSEDCLTFLLKKIAVSEQ 370
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
D+ LFS+ +++F E+GNVL D+M+ +VL++L SVGR GE N++L M+E G++ S +K
Sbjct: 371 FDLDLFSRALKIFSESGNVLKDSMVFAVLRSLSSVGRTGEFNEVLNVMKEYGYVCSGGLK 430
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
K+A+RLS GK DEAN+FM+++EASG + +K W SLI+GHC AGDLDKA+DC KMVE
Sbjct: 431 RKVAYRLSRTGKSDEANDFMNNLEASGCNPDNKTWASLIEGHCAAGDLDKASDCIHKMVE 490
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
K G A YA+DL+VN YC K DA + + V + LKP H+TY+ LI LL+ F
Sbjct: 491 KGGVPSAAYALDLIVNGYCQKKHETDASHLLFDLVDKSQLKPRHSTYKTLINKLLLCGEF 550
Query: 567 KDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626
KDAL LL +M++H FPPF++PFI YVSKSGT+DD + FLKGMTSK+FPS +VVL LF AF
Sbjct: 551 KDALKLLGMMRNHEFPPFIEPFISYVSKSGTADDGLEFLKGMTSKKFPSTTVVLQLFEAF 610
Query: 627 FQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660
FQA RH +AQDLL KCP Y+RNHADVL+L S K
Sbjct: 611 FQAGRHGDAQDLLLKCPGYIRNHADVLDLFCSMK 644
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449482262|ref|XP_004156231.1| PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/574 (57%), Positives = 445/574 (77%), Gaps = 1/574 (0%)
Query: 87 SYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDE 146
++SSEPA Q ESD V+ DI K DV++I K LE +GVV +H++VL+VL LES+PD+
Sbjct: 72 TFSSEPAAVQ-ESDHAVIVDILSKSRDVDEIRKGLESNGVVISHDLVLEVLGQLESNPDD 130
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT 206
A RFF+WV E+LSSK++NLML I+GV+GLV++FW L MKKKGYG++ VR+K+
Sbjct: 131 AIRFFDWVSGDYGEKLSSKSFNLMLGILGVNGLVKKFWDLNCDMKKKGYGMSKTVRDKVL 190
Query: 207 EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFS 266
EKF+K+GL+S+ EKL+ +FA+GS D S + + S + +++R+++WG+DVE+QLRD++V+FS
Sbjct: 191 EKFDKDGLKSEAEKLRDMFASGSTDKSPDNIGSNVSRLIRTNLWGEDVEQQLRDMSVSFS 250
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
+D+VK +++ L +P KA IFF W +ESG KHDE +YNAMA+VLGREDCIDRFWKV+DE
Sbjct: 251 SDMVKMILEDLSTDPAKAYIFFLWIDESGMFKHDEQTYNAMATVLGREDCIDRFWKVVDE 310
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQ 386
MRS+GY+MEMET KVLGRF +R M++EAV+LY FAM+ +KPS +C TFLL+KI VS+Q
Sbjct: 311 MRSQGYKMEMETFTKVLGRFCKRRMIEEAVNLYVFAMSVGDKPSEDCLTFLLKKIAVSEQ 370
Query: 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446
D+ LFS+ +++F E+GNVL D+M+ +VL++L SVGR GE N++L M+E G++ S +K
Sbjct: 371 FDLDLFSRALKIFSESGNVLKDSMVFAVLRSLSSVGRTGEFNEVLNVMKEYGYVCSGGLK 430
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506
K+A+RLS GK DEAN+FM+++EASG + +K W SLI+GHC AGDLDKA+DC KMVE
Sbjct: 431 RKVAYRLSRTGKSDEANDFMNNLEASGCNPDNKTWASLIEGHCAAGDLDKASDCIHKMVE 490
Query: 507 KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566
K G A YA+DL+VN YC K DA + + V + LKP H+TY+ LI LL+ F
Sbjct: 491 KGGVPSAAYALDLIVNGYCQKKHETDASHLLFDLVDKSQLKPRHSTYKTLINKLLLCGEF 550
Query: 567 KDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626
KDAL LL +M++H FPPF++PFI YVSKSGT+DD + FLKGMTSK+FPS +VVL LF AF
Sbjct: 551 KDALKLLGMMRNHEFPPFIEPFISYVSKSGTADDGLEFLKGMTSKKFPSTTVVLQLFEAF 610
Query: 627 FQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660
FQA RH +AQDLL KCP Y+RNHADVL+L S K
Sbjct: 611 FQAGRHGDAQDLLLKCPGYIRNHADVLDLFCSMK 644
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828702|ref|XP_002882233.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328073|gb|EFH58492.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/667 (52%), Positives = 477/667 (71%), Gaps = 25/667 (3%)
Query: 1 MRHQWR-FLLFRNYPRSSLQFTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRF 59
MR+QWR LLFR+Y SS F FQV N S + SS LP RF
Sbjct: 1 MRYQWRRLLLFRSYRSSSHPFLSHHSQFQVISN-------STRSFSSFLP-------ERF 46
Query: 60 SRLPICYSR-LINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDIS 118
+ + L+ L P + + S+SS+PA+E+K TVV DIF + S +DI
Sbjct: 47 EVGALQQRQCLLALRSP----LTSSVSRSFSSDPAIEEKPPAETVVIDIFSRLSAKDDIR 102
Query: 119 KQLELSGVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHG 178
K+L+ + VV +HE+ L+VL+ LESSPD A FF WVLE +LSSK+YN MLRI+GV+G
Sbjct: 103 KELDSNDVVISHELALRVLRELESSPDVAGSFFKWVLEAYPRKLSSKSYNTMLRILGVNG 162
Query: 179 LVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVA 238
LV EFW LVD MKKKG+GV+++VRNK+ +KF+K+GLESDLE+LK IFA+GS+DNS++KV
Sbjct: 163 LVDEFWELVDAMKKKGHGVSANVRNKVGDKFQKDGLESDLERLKEIFASGSMDNSVDKVC 222
Query: 239 SRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK 298
+R+CK+V ++W DVE+QLRDL + F DLVK V++KL +P+KAL+FFRW +ESG K
Sbjct: 223 NRVCKIVMKEVWSADVEKQLRDLKLEFKTDLVKMVLEKLDVDPRKALLFFRWIDESGSFK 282
Query: 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358
HDE +YNAMA VLG+E +DRF +++E+RS GYEMEMET V+V RF + M+KEAV+L
Sbjct: 283 HDEKTYNAMARVLGKEKFLDRFQHIIEEIRSAGYEMEMETYVRVSARFCQTKMIKEAVEL 342
Query: 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKAL 418
+EFAMA N P+ +CC+ LL+KIV +K+LDM LF++ V+ + NGNV+ D+ML VLK+L
Sbjct: 343 FEFAMAGSNTPTPHCCSLLLKKIVSAKKLDMDLFTRTVKAYTGNGNVVPDSMLQHVLKSL 402
Query: 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478
SV R G+ N++LKAM EGG++ S +++S IA LS GKKDEANE ++ MEASG+ + D
Sbjct: 403 RSVDRFGQSNEVLKAMNEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEASGNHLDD 462
Query: 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538
K SL++GHC A DL++A++CF KM+ KEG S+AGYA + LV YC+ +A D K
Sbjct: 463 KAMASLVEGHCDAKDLEEASECFNKMIGKEGVSYAGYAFEKLVLAYCNSFQARDVYKLFT 522
Query: 539 NCVREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLCLMKDHGFPPFVDPFIKYVS 593
V++ LKPWH+TY+ +++NLL+++ GF++ALSLL +MK+HGFPPFVDPF+ Y+S
Sbjct: 523 ELVKQNQLKPWHSTYKIMVRNLLMKKVARDGGFEEALSLLPMMKNHGFPPFVDPFMDYLS 582
Query: 594 KSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVL 653
SGTS +A AFLK +TSK+FPS S+VL +F A ++ RHSEAQDLLS P Y+R +A+VL
Sbjct: 583 NSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYIRRNAEVL 642
Query: 654 NLLYSKK 660
L S K
Sbjct: 643 ELFNSMK 649
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 671 | ||||||
| TAIR|locus:2076854 | 665 | AT3G02490 "AT3G02490" [Arabido | 0.864 | 0.872 | 0.536 | 3.6e-176 | |
| TAIR|locus:2146072 | 668 | AT5G15980 "AT5G15980" [Arabido | 0.855 | 0.859 | 0.534 | 1e-169 | |
| TAIR|locus:2101190 | 621 | BIR6 "Buthionine sulfoximine-i | 0.803 | 0.867 | 0.329 | 1.2e-81 | |
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.619 | 0.694 | 0.251 | 9.6e-18 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.581 | 0.447 | 0.226 | 6.8e-17 | |
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.573 | 0.643 | 0.256 | 2e-16 | |
| TAIR|locus:2096074 | 599 | AT3G62540 "AT3G62540" [Arabido | 0.575 | 0.644 | 0.253 | 2.6e-16 | |
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.605 | 0.796 | 0.242 | 2.9e-16 | |
| TAIR|locus:2173403 | 730 | AT5G64320 "AT5G64320" [Arabido | 0.527 | 0.484 | 0.239 | 3.7e-15 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.818 | 0.728 | 0.214 | 3.8e-15 |
| TAIR|locus:2076854 AT3G02490 "AT3G02490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1663 (590.5 bits), Expect = 3.6e-176, Sum P(2) = 3.6e-176
Identities = 317/591 (53%), Positives = 448/591 (75%)
Query: 81 RNPMICS----YSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKV 136
R+P+ S +SSE A+E+K TVV D+F + + ++I+K+L+ + VV +HE+ L+V
Sbjct: 57 RSPLASSVSRRFSSESAIEEKLPAETVVIDVFSRLNGKDEITKELDSNDVVISHELALRV 116
Query: 137 LKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYG 196
L+ LESSPD A RFF W LE ++LSSK+YN MLRI GV+GLV EFW LVD MKKKG+G
Sbjct: 117 LRELESSPDVAGRFFKWGLEAYPQKLSSKSYNTMLRIFGVNGLVDEFWRLVDDMKKKGHG 176
Query: 197 VASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVER 256
V+++VR+++ +KF+K+GLE+DLE+LK +FA+GS+DNS++KV +R+CK+V ++WG DVE+
Sbjct: 177 VSANVRDRVGDKFKKDGLENDLERLKELFASGSMDNSVDKVCNRVCKIVMKEVWGADVEK 236
Query: 257 QLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDC 316
QLRDL + F +D+VK V++KL +P+KAL+FFRW +ESG KHDE +YNAMA VLG+E
Sbjct: 237 QLRDLKLEFKSDVVKMVLEKLDVDPRKALLFFRWIDESGSFKHDEKTYNAMARVLGKEKF 296
Query: 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA--CKNKPSVNCC 374
+DRF +++E+RS GYEMEMET V+V RF + M+KEAV+L+EFAMA N P+ +CC
Sbjct: 297 LDRFQHMIEEIRSAGYEMEMETYVRVSARFCQTKMIKEAVELFEFAMAGSISNTPTPHCC 356
Query: 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434
+ LL+KIV +K+LDM LF++ ++ + NGNV+ D ML VLK+L SV R G+ N++LKAM
Sbjct: 357 SLLLKKIVTAKKLDMDLFTRTLKAYTGNGNVVPDVMLQHVLKSLRSVDRFGQSNEVLKAM 416
Query: 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494
EGG++ S +++S IA LS GKKDEANE ++ MEASG+ + DK SL++GHC A DL
Sbjct: 417 NEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEASGNHLDDKAMASLVEGHCDAKDL 476
Query: 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554
++A++CF+KM+ KEG S+AGYA + LV YC+ +A D K V++ LKPWH+TY+
Sbjct: 477 EEASECFKKMIGKEGVSYAGYAFEKLVLAYCNSFQARDVYKLFSELVKQNQLKPWHSTYK 536
Query: 555 ELIKNLLVQR-----GFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMT 609
+++NLL+++ GF++ALSLL +M++HGFPPFVDPF+ Y+S SGTS +A AFLK +T
Sbjct: 537 IMVRNLLMKKVARDGGFEEALSLLPMMRNHGFPPFVDPFMDYLSNSGTSAEAFAFLKAVT 596
Query: 610 SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660
SK+FPS S+VL +F A ++ RHSEAQDLLS P Y+R +A+VL L + K
Sbjct: 597 SKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYIRRNAEVLELFNTMK 647
|
|
| TAIR|locus:2146072 AT5G15980 "AT5G15980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1617 (574.3 bits), Expect = 1.0e-169, Sum P(2) = 1.0e-169
Identities = 311/582 (53%), Positives = 428/582 (73%)
Query: 87 SYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKVLKNLESSPDE 146
S+SSEPA+E+K S V DIF + S ++I K+LE SGVV + ++ LKVL+ LES+PD
Sbjct: 73 SFSSEPAVEEKSSAEATVIDIFSRLSGEDEIRKELESSGVVISQDLALKVLRKLESNPDV 132
Query: 147 ARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT 206
A+ FF W+ E E LSSK YN+MLRI+G +GLV EFWGLVDVMKKKG+G++++VR+K+
Sbjct: 133 AKSFFQWIKEASPEELSSKNYNMMLRILGGNGLVDEFWGLVDVMKKKGHGLSANVRDKVG 192
Query: 207 EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFS 266
+KF+K+GLESDL +L+ +F + +DNS E V R+CK+V + WGDDVE+++RDLNV F
Sbjct: 193 DKFQKDGLESDLLRLRKLFTSDCLDNSAENVCDRVCKIVMKEEWGDDVEKRVRDLNVEFK 252
Query: 267 NDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326
+DLVK +V++L EP+KAL+FFRW +ES KHDE +YNAMA VLG+E +DRF ++ E
Sbjct: 253 SDLVKMIVERLDVEPRKALLFFRWIDESDLFKHDEKTYNAMARVLGKEKFLDRFQNIVVE 312
Query: 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA---CKNKPSVNCCTFLLRKIVV 383
MRS GYE+E+ET V+V RF + ++KEAVDL+E AMA N P+ +C LL+KIV
Sbjct: 313 MRSAGYEVEIETYVRVSTRFCQTKLIKEAVDLFEIAMAGSSSSNNPTPHCFCLLLKKIVT 372
Query: 384 SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS 443
+K LDM LFS+ V+V+ +NGN LTD++L SVLK+L SV R+ + N++LK M+ GG++ S
Sbjct: 373 AKILDMDLFSRAVKVYTKNGNALTDSLLKSVLKSLRSVDRVEQSNELLKEMKRGGYVPSG 432
Query: 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503
+M+S IA LS GKKDEA+EF+D ME+SG+++ DK SL++G+C +G+LD+A CF+K
Sbjct: 433 DMQSMIASSLSRKGKKDEADEFVDFMESSGNNLDDKAMASLVEGYCDSGNLDEALVCFEK 492
Query: 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563
MV G S+A Y+ + LV YC+KN+ DA K + V + LKP H+TY+ L+ NLL +
Sbjct: 493 MVGNTGVSYADYSFEKLVLAYCNKNQVRDAYKLLSAQVTKNQLKPRHSTYKSLVTNLLTK 552
Query: 564 R-----GFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSV 618
+ GF++ALSLL +MKDHGFPPF+DPF+ Y S +G S +A+ FLK MTS FP +SV
Sbjct: 553 KIARDGGFEEALSLLPIMKDHGFPPFIDPFMSYFSSTGKSTEALGFLKAMTSNNFPYISV 612
Query: 619 VLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660
VL +F ++ RHSEAQDLLS CP Y+RN+ DVL L + K
Sbjct: 613 VLRVFETMMKSARHSEAQDLLSLCPNYIRNNPDVLELFNTMK 654
|
|
| TAIR|locus:2101190 BIR6 "Buthionine sulfoximine-insensitive roots 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 799 (286.3 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
Identities = 181/549 (32%), Positives = 295/549 (53%)
Query: 115 NDISKQLELS----GVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLM 170
ND SK++E + THE + VL+ LE P++A F +WVL S+ Y++M
Sbjct: 70 NDWSKEVEEGLRKPDMSLTHETAIYVLRKLEKYPEKAYYFLDWVLRDSGLSPSTPLYSIM 129
Query: 171 LRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSI 230
LRI+ ++ FW + MK+ G+ + + + KE ++D + +
Sbjct: 130 LRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKADAVAVAHFYERMLK 189
Query: 231 DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRW 290
+N++ VA + VV W +VER+L+++ + S++ V V+ +L + P KAL FF W
Sbjct: 190 ENAMSVVAGEVSAVVTKGDWSCEVERELQEMKLVLSDNFVIRVLKELREHPLKALAFFHW 249
Query: 291 A----EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF 346
SG+ +H +YNA VL R + + FW V+DEM++ GY+M+++T +KV +F
Sbjct: 250 VGGGGSSSGY-QHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAGYDMDLDTYIKVSRQF 308
Query: 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406
+ M+ E V LYE+ M KPS+ C+ LLR + S D+ L +V R + G L
Sbjct: 309 QKSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRVSRKYESTGKSL 368
Query: 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466
+ A+ + + ++L SVGR E +I KAM G+ + S++ F L A + +EA +
Sbjct: 369 SKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCKAKRLEEARGVL 428
Query: 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526
D MEA G K W LI+GHC +LDKA CF M+EK G +D+L++ +
Sbjct: 429 DQMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEK-GFDIDSNLLDVLIDGFVI 487
Query: 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD 586
N+ A F+ V+ ++KPW +TY+ LI LL + ++AL LL +MK +P + +
Sbjct: 488 HNKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMMKKQNYPAYAE 547
Query: 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV 646
F Y++K GT +DA FL ++SK PS + + AF++ R ++A++LL CP +
Sbjct: 548 AFDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAKNLLFICPHHF 607
Query: 647 RNHADVLNL 655
+ H + L
Sbjct: 608 KTHPKISEL 616
|
|
| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 9.6e-18, P = 9.6e-18
Identities = 112/445 (25%), Positives = 198/445 (44%)
Query: 159 SERLSSKTYNLMLRIVGVHGLVQEFWGLVDV-MKKKGYGV-ASHVRNKMTEKFEKEGLES 216
S + S TY+ +I H VQ L+D + +G+ +S+V + E+ E E ++
Sbjct: 59 SRMIHSSTYHPYRQIPLPHSSVQ----LLDASLGCRGFSSGSSNVSDGCDEEVESE-CDN 113
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDD--VERQLRDLNVTFSNDLVKFVV 274
D E G+ S N E+V R+CKV+ +++ D +E L ++ + S+DL+ V+
Sbjct: 114 DEET--GVSCVESSTNP-EEV-ERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVL 168
Query: 275 DKLGDEPKKALIFFRWA-EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
++ K A FF WA E GF HD +YN+M S+L + + VL+EM +KG
Sbjct: 169 ERFRHARKPAFRFFCWAAERQGFA-HDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL- 226
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMR 390
+ MET + F+ K+AV ++E K K ++NC L + + K+ +
Sbjct: 227 LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQV- 285
Query: 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450
LF K+ F N ++T +L L V + E +I M + G + +
Sbjct: 286 LFDKLKERFTPN--MMTYTVL---LNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVML 340
Query: 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
L + KK +A + M++ G + + +I+ C ++ A + F MV+ G
Sbjct: 341 EGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GL 399
Query: 511 SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570
L+ + ++ + +D + ++E P TY LIK + Q+ + A
Sbjct: 400 QPDAAVYTCLITGFGTQKK-LDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHAT 458
Query: 571 SLLCLMKDHGFPPFVDPFIKYVSKS 595
+ M + P + F + KS
Sbjct: 459 RIYNKMIQNEIEPSIHTF-NMIMKS 482
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 6.8e-17, P = 6.8e-17
Identities = 90/398 (22%), Positives = 164/398 (41%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300
IC V+ + WG E L L+ + V V+ +L D +A+ +FRW E + H
Sbjct: 39 ICNVLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDV-NRAIEYFRWYERRTELPHC 97
Query: 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYE 360
SYN++ V+ R D ++L EM G+ + TC++++ + N ++E D+ +
Sbjct: 98 PESYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQ 157
Query: 361 FAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS 420
K +P+ + T L+ DM L + + +E G T + ++++
Sbjct: 158 MMRKFKFRPAFSAYTTLIGAFSAVNHSDMML--TLFQQMQELGYEPTVHLFTTLIRGFAK 215
Query: 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM 480
GR+ +L M+ A + + GK D A +F +EA+G +
Sbjct: 216 EGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVT 275
Query: 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540
+ S+I C A LD+A + F+ + EK YA + ++ Y S + +A +
Sbjct: 276 YTSMIGVLCKANRLDEAVEMFEHL-EKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLER- 333
Query: 541 VREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF--VDPFIKYVSKSGTS 598
R P Y ++ L +AL + MK P + I + ++G
Sbjct: 334 QRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKL 393
Query: 599 DDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARRHSEA 635
D A M FP++ V + ++++ EA
Sbjct: 394 DTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEA 431
|
|
| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 106/414 (25%), Positives = 187/414 (45%)
Query: 159 SERLSSKTYNLMLRIVGVHGLVQEFWGLVDV-MKKKGYGV-ASHVRNKMTEKFEKEGLES 216
S + S TY+ +I H VQ L+D + +G+ +S+V + E+ E E ++
Sbjct: 59 SRMIHSSTYHPYRQIPLPHS-VQ----LLDASLGCRGFSSGSSNVSDGCDEEVESE-CDN 112
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDD--VERQLRDLNVTFSNDLVKFVV 274
D E G+ S N E+V R+CKV+ +++ D +E L ++ + S+DL+ V+
Sbjct: 113 DEET--GVSCVESSTNP-EEV-ERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVL 167
Query: 275 DKLGDEPKKALIFFRWA-EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
++ K A FF WA E GF HD +YN+M S+L + + VL+EM +KG
Sbjct: 168 ERFRHARKPAFRFFCWAAERQGFA-HDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL- 225
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMR 390
+ MET + F+ K+AV ++E K K ++NC L + + K+ +
Sbjct: 226 LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQV- 284
Query: 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450
LF K+ F N ++T +L L V + E +I M + G + +
Sbjct: 285 LFDKLKERFTPN--MMTYTVL---LNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVML 339
Query: 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
L + KK +A + M++ G + + +I+ C ++ A + F MV+ G
Sbjct: 340 EGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GL 398
Query: 511 SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
L+ + ++ + +D + ++E P TY LIK + Q+
Sbjct: 399 QPDAAVYTCLITGFGTQKK-LDTVYELLKEMQEKGHPPDGKTYNALIKLMANQK 451
|
|
| TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 105/414 (25%), Positives = 186/414 (44%)
Query: 159 SERLSSKTYNLMLRIVGVHGLVQEFWGLVDV-MKKKGYGV-ASHVRNKMTEKFEKEGLES 216
S + S TY+ +I H VQ L+D + +G+ +S+V + E+ E E ++
Sbjct: 59 SRMIHSSTYHPYRQIPLPHSSVQ----LLDASLGCRGFSSGSSNVSDGCDEEVESE-CDN 113
Query: 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDD--VERQLRDLNVTFSNDLVKFVV 274
D E G+ S N E+V R+CKV+ +++ D +E L ++ + S+DL+ V+
Sbjct: 114 DEET--GVSCVESSTNP-EEV-ERVCKVI-DELFALDRNMEAVLDEMKLDLSHDLIVEVL 168
Query: 275 DKLGDEPKKALIFFRWA-EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYE 333
++ K A FF WA E GF H +YN+M S+L + + VL+EM +KG
Sbjct: 169 ERFRHARKPAFRFFCWAAERQGFA-HASRTYNSMMSILAKTRQFETMVSVLEEMGTKGL- 226
Query: 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK---PSVNCCTFLLRKIVVSKQLDMR 390
+ MET + F+ K+AV ++E K K ++NC L + + K+ +
Sbjct: 227 LTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQV- 285
Query: 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450
LF K+ F N ++T +L L V + E +I M + G + +
Sbjct: 286 LFDKLKERFTPN--MMTYTVL---LNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVML 340
Query: 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510
L + KK +A + M++ G + + +I+ C ++ A + F MV+ G
Sbjct: 341 EGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GL 399
Query: 511 SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564
L+ + ++ + +D + ++E P TY LIK + Q+
Sbjct: 400 QPDAAVYTCLITGFGTQKK-LDTVYELLKEMQEKGHPPDGKTYNALIKLMANQK 452
|
|
| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 103/424 (24%), Positives = 176/424 (41%)
Query: 221 LKGIFATGSID-----NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD 275
L G F S++ N + A RICK++ + VE L + +V S L++ V+
Sbjct: 44 LYGSFHASSVETQVSANDASQDAERICKIL-TKFTDSKVETLLNEASVKLSPALIEEVLK 102
Query: 276 KLGDEPKKALIFFRWAE-ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334
KL + AL F+WAE + GF KH S+YNA+ LG+ W ++D+M++K +
Sbjct: 103 KLSNAGVLALSVFKWAENQKGF-KHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL-L 160
Query: 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLF 392
ET + R++ VKEA+ + K + +L + S+ + ++F
Sbjct: 161 SKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVF 220
Query: 393 SKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452
K+ + R ++ + +L +++ R+ E N+ M++ GF I
Sbjct: 221 DKMKKK-RFEPDIKSYTILLEGWGQELNLLRVDEVNR---EMKDEGFEPDVVAYGIIINA 276
Query: 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH 512
A K +EA F + ME ++ SLI G L+ A + F++ + G
Sbjct: 277 HCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERS-KSSGFPL 335
Query: 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572
+ LV YC R DA K V +R + P TY+ ++ +L+ + K+A +
Sbjct: 336 EAPTYNALVGAYCWSQRMEDAYKTVDE-MRLKGVGPNARTYDIILHHLIRMQRSKEAYEV 394
Query: 573 LCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKR-FPSMSVVLCLFAAFFQARR 631
M + ++ D AI M K P M + L A +
Sbjct: 395 YQTMSCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENK 454
Query: 632 HSEA 635
EA
Sbjct: 455 LDEA 458
|
|
| TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 218 (81.8 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
Identities = 89/372 (23%), Positives = 158/372 (42%)
Query: 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVK-FVVDKLGDEPKKALIFFRWAEESGFVKH 299
+CK+ R D D+ ++ + N L+ FV D+ K L G V
Sbjct: 332 LCKIGRVDA-AKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDM--VTSYGIVP- 387
Query: 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359
D +YN++ +E + +VL +MR+KG + + + ++ F + + EA ++
Sbjct: 388 DVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVL 447
Query: 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NGNVLTDAM-LNSVLK 416
A KP N F ++S + V +FRE D NS++
Sbjct: 448 NEMSADGLKP--NTVGF---NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLIS 502
Query: 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476
L V + +L+ M G +A++ + + G+ EA + ++ M GS +
Sbjct: 503 GLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPL 562
Query: 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536
+ + SLIKG C AG++DKA F+KM+ ++G + + + ++L+N C +A +F
Sbjct: 563 DEITYNSLIKGLCRAGEVDKARSLFEKML-RDGHAPSNISCNILINGLCRSGMVEEAVEF 621
Query: 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVS 593
V P T+ LI L +D L++ ++ G PP F + ++
Sbjct: 622 QKEMVLRGST-PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLC 680
Query: 594 KSGTSDDAIAFL 605
K G DA L
Sbjct: 681 KGGFVYDACLLL 692
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 3.8e-15, P = 3.8e-15
Identities = 126/587 (21%), Positives = 240/587 (40%)
Query: 68 RLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVV 127
RL NL K PNF +P Y + F + I D+ S + E+
Sbjct: 68 RLFNLAS-KKPNF-SPEPALYEEILLRLGRSGSFDDMKKIL---EDMK--SSRCEMGTST 120
Query: 128 FTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLV 187
F ++++ E DE +W++++ + + YN ML ++ V G + LV
Sbjct: 121 FL--ILIESYAQFELQ-DEILSVVDWMIDEFGLKPDTHFYNRMLNLL-VDGNSLK---LV 173
Query: 188 DVM--KKKGYGVASHVR--NKMTEKF-EKEGLESDLEKLKGIFATGSIDNSIEKVASRIC 242
++ K +G+ V N + + L + L+ + + G + + EK + +
Sbjct: 174 EISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPD--EKTFTTVM 231
Query: 243 K--VVRSDIWGD-DVERQLRDLNVTFSNDLVKFVVDKLGDEPK--KALIFFR-WAEESGF 296
+ + D+ G + Q+ + ++SN V +V E + AL F + + + GF
Sbjct: 232 QGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGF 291
Query: 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356
D+ ++N + + L + + +++D M +GY+ ++ T V+ + VKEAV
Sbjct: 292 FP-DQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAV 350
Query: 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAM-LNSVL 415
++ + + P+ L+ + Q++ +++ RV G +L D NS++
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEA--TELARVLTSKG-ILPDVCTFNSLI 407
Query: 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475
+ L ++ + M G + + L S GK DEA + ME SG
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCA 467
Query: 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535
+ +LI G C A +A + F +M E G S + L++ C R DA +
Sbjct: 468 RSVITYNTLIDGFCKANKTREAEEIFDEM-EVHGVSRNSVTYNTLIDGLCKSRRVEDAAQ 526
Query: 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS-- 593
+ + E KP TY L+ + K A ++ M +G P + + +S
Sbjct: 527 LMDQMIMEGQ-KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGL 585
Query: 594 -KSGTSDDAIAFLKGMTSKRFP-SMSVVLCLFAAFFQARRHSEAQDL 638
K+G + A L+ + K + + F+ R+ +EA +L
Sbjct: 586 CKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINL 632
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9M891 | PP208_ARATH | No assigned EC number | 0.5074 | 0.9463 | 0.9548 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 671 | |||
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 480 MWVSLIKGHCVAGDLDKAADCFQKMVEK 507
+ SLI G+C AG L++A + F++M EK
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 671 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.82 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.73 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.72 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.69 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.69 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.66 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.64 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.62 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.59 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.55 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.45 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.42 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.41 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.41 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.39 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.38 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.38 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.37 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.33 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.31 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.3 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.3 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.27 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.26 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.26 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.26 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.26 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.25 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.25 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.24 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.19 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.15 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.14 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.13 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.12 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.12 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.09 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.09 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.08 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.05 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.0 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.99 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.99 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.91 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.89 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.88 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.88 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.88 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.86 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.85 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.84 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.84 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.84 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.82 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.79 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.78 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.75 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.71 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.69 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.67 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.6 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.6 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.59 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.58 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.57 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.57 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.56 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.53 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.52 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.5 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.48 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.39 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.37 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.35 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.33 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.33 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.28 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.28 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.25 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.24 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.2 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.2 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.18 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.18 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.15 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.13 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.13 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.1 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.1 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.06 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.05 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.03 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 97.99 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.96 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.93 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.93 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.91 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.91 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.9 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.88 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.83 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.8 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 97.78 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.78 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.76 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.76 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.74 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.73 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.72 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.69 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.69 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.69 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.66 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.65 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.62 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.62 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.62 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.61 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.57 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.55 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.48 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.34 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.31 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.3 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.23 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.2 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.17 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.13 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.01 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.98 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.97 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.93 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.89 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 96.78 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.78 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.7 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.69 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.68 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.68 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.65 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.61 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.6 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.54 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.54 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.53 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.51 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.49 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.46 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.44 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.42 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.4 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.32 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 96.25 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.24 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.2 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.19 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.16 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.12 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.09 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.09 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.05 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.05 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.02 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.99 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.97 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 95.72 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.7 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.65 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.52 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 95.52 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.49 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.36 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.22 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.16 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.13 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.12 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.1 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.07 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.05 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.02 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 95.02 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.82 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 94.61 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.37 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.27 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.24 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.24 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.98 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.96 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.89 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.66 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.65 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.48 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.39 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.38 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.2 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 93.03 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.94 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.71 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.64 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 92.43 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.37 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 92.1 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.04 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.93 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.87 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 91.82 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.68 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.51 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.33 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.13 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.08 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.05 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.69 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.66 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.6 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 90.24 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 90.2 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 89.79 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 89.74 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 89.2 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 89.06 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.89 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.59 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.22 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.18 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.71 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.67 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.53 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.25 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 86.68 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 86.6 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.49 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 86.31 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.1 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 85.69 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 85.67 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 85.61 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.45 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 85.06 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 84.81 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.59 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 84.47 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 84.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 84.08 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 83.72 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 82.45 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 82.32 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.26 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 82.2 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 81.45 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 81.3 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.21 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.51 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-75 Score=658.88 Aligned_cols=610 Identities=13% Similarity=0.107 Sum_probs=501.8
Q ss_pred CCccccccchhccc----ccCCCccccccccccCcccccccccccCCCCCCCCCcccccCCCCcc------------ccc
Q 042546 33 PNLTLHESLHTLSS----LLPTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPA------------MEQ 96 (671)
Q Consensus 33 ~~~~~h~~~~~~~~----~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~wn~~i~~~~~~~~------------~~~ 96 (671)
.|.++|..+++.+. +++|+||++|+|+|++++|+++|++| +.+|+++||+||++|++.+. ..|
T Consensus 104 ~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m-~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g 182 (857)
T PLN03077 104 EGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM-PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG 182 (857)
T ss_pred HHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcC-CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 44566666655554 47899999999999999999999999 99999999999999998764 248
Q ss_pred cCCchhHHHHHhhhcCCchhHHHHHHhc------CCCCCH---HHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHH
Q 042546 97 KESDFTVVSDIFYKFSDVNDISKQLELS------GVVFTH---EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTY 167 (671)
Q Consensus 97 ~~p~~~t~~~~l~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~ 167 (671)
..||.+||..++++|+..+++..+.+.| |..++. +.++..+.+ +|++++|+++|+.|++ ||+++|
T Consensus 183 ~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k-~g~~~~A~~lf~~m~~-----~d~~s~ 256 (857)
T PLN03077 183 VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK-CGDVVSARLVFDRMPR-----RDCISW 256 (857)
T ss_pred CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc-CCCHHHHHHHHhcCCC-----CCcchh
Confidence 9999999999999999887766555443 444443 445555566 7999999999999998 999999
Q ss_pred HHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhc
Q 042546 168 NLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRS 247 (671)
Q Consensus 168 n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (671)
|+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|+.+.+.+++..+.+.+..+.......++..+.+.
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988887777766666665666666655555
Q ss_pred CCC--hhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 042546 248 DIW--GDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLD 325 (671)
Q Consensus 248 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 325 (671)
+.+ +..+...+...+....+.++..+.+. |++++|+++|++|.+ .|+.||..||+++|.+|++.|++++|.++++
T Consensus 337 g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~--g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKN--GLPDKALETYALMEQ-DNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC--CCHHHHHHHHHHHHH-hCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 533 23344444433333333444444443 777788888887765 5677888888888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCC
Q 042546 326 EMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV 405 (671)
Q Consensus 326 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (671)
.|.+.|+.|+..+|++||.+|++.|++++|.++|++|. .||..+|+++|.+|++.|..+ .+..++++|.. +..
T Consensus 414 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~--eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 414 LAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCF--EALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHH--HHHHHHHHHHh-CCC
Confidence 88777777788888888888888888888888887775 357777888888887777443 56677777764 588
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485 (671)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 485 (671)
||..||+++|.+|++.|+++.+.+++..|.+.|+.+|..++|+||++|+++|++++|+++|+.| .||.++||+||
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI 561 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILL 561 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHH
Confidence 8888888888888888888888888888888888888888888999999999999999999887 58999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042546 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565 (671)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 565 (671)
.+|++.|+.++|.++|++|.+ .|+.||..||+++|.+|++.|++++|.++|++|.+++|+.|+..+|++|+++|++.|+
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVE-SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHH-cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 999999999999999999999 8999999999999999999999999999999998667999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 042546 566 FKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 566 ~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 642 (671)
+++|.+++++|. ++||..+| +.+|...|+.+.|+...+++.+..+.+...|..|.+.|++.|+|++|.++.+.|
T Consensus 641 ~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 641 LTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH
Confidence 999999999984 78988765 677778899999999988888877778889999999999999999999999999
Q ss_pred hHhhh------------------------------ccHHHHHHHHhhhcCCCCCCC
Q 042546 643 PRYVR------------------------------NHADVLNLLYSKKSGGDSAPA 668 (671)
Q Consensus 643 ~~~~~------------------------------~~~~~~~l~~~m~~~g~~p~~ 668 (671)
.+.+- .+.....+..+|++.|+.||.
T Consensus 718 ~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~ 773 (857)
T PLN03077 718 RENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSE 773 (857)
T ss_pred HHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCc
Confidence 87531 134456788899999999985
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-70 Score=605.79 Aligned_cols=499 Identities=15% Similarity=0.160 Sum_probs=371.5
Q ss_pred CCCccccccccccCcccccccccccCCCCCCCCCcccccCCCCccccccCCchhHHHHHhhhcCCchhHHHHHHhcCCCC
Q 042546 49 PTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVF 128 (671)
Q Consensus 49 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~wn~~i~~~~~~~~~~~~~p~~~t~~~~l~~~~~~~~~~~~~~~~~~~~ 128 (671)
...+++.|+|+|++++|.++|++| +.++++.||.++. ..+
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M-~~~gvv~~~~v~~------------------~~l--------------------- 412 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDM-EKRGLLDMDKIYH------------------AKF--------------------- 412 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHH-HhCCCCCchHHHH------------------HHH---------------------
Confidence 355667778889999999999999 8888888877542 112
Q ss_pred CHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042546 129 THEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEK 208 (671)
Q Consensus 129 ~~~~~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~ 208 (671)
...+.. .|.+++|+.+|+.|+. ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+
T Consensus 413 -----i~~~~~-~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~ 481 (1060)
T PLN03218 413 -----FKACKK-QRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481 (1060)
T ss_pred -----HHHHHH-CCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 222233 5889999999999987 99999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHH
Q 042546 209 FEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFF 288 (671)
Q Consensus 209 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f 288 (671)
|++. |++++|.++|
T Consensus 482 y~k~------------------------------------------------------------------G~vd~A~~vf 495 (1060)
T PLN03218 482 CAKS------------------------------------------------------------------GKVDAMFEVF 495 (1060)
T ss_pred HHhC------------------------------------------------------------------cCHHHHHHHH
Confidence 9988 4566677777
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh--CC
Q 042546 289 RWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMA--CK 366 (671)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~--~g 366 (671)
++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+ .|
T Consensus 496 ~eM~~-~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 496 HEMVN-AGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred HHHHH-cCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 77765 5667777777777777777777777777777777777777777777777777777777777777777764 56
Q ss_pred CCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042546 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446 (671)
Q Consensus 367 ~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 446 (671)
+.||..+|+++|.+|++.|.. +.+.++++.|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus 575 i~PD~vTynaLI~ay~k~G~l--deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 575 IDPDHITVGALMKACANAGQV--DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred CCCcHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 777777777777777777743 356677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 042546 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526 (671)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 526 (671)
+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-IKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777777 6777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HH----HhcC---
Q 042546 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIK---YV----SKSG--- 596 (671)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~---~l----~~~g--- 596 (671)
.|++++|.++|++|.. .|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..++.. ++ .+++
T Consensus 732 ~G~~eeAlelf~eM~~-~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~ 810 (1060)
T PLN03218 732 GNQLPKALEVLSEMKR-LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALG 810 (1060)
T ss_pred CCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 7777777777777765 37777777777777777777777777777777777777777655522 11 1111
Q ss_pred ----------------ChHHHHHHHHHhhhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh-------------
Q 042546 597 ----------------TSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV------------- 646 (671)
Q Consensus 597 ----------------~~~~A~~~~~~m~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~------------- 646 (671)
..++|..+|++|.+.+. ||..+|+.++.++++.+..+.+.++++.|....
T Consensus 811 ~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~ 890 (1060)
T PLN03218 811 EPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVD 890 (1060)
T ss_pred hhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHH
Confidence 13457777777777443 777777777777777777777777776653210
Q ss_pred --h-ccHHHHHHHHhhhcCCCCCCCc
Q 042546 647 --R-NHADVLNLLYSKKSGGDSAPAV 669 (671)
Q Consensus 647 --~-~~~~~~~l~~~m~~~g~~p~~~ 669 (671)
+ ..++++.+|++|.+.|+.|+..
T Consensus 891 g~~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 891 GFGEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hhccChHHHHHHHHHHHHcCCCCCcc
Confidence 1 1357888888888999999875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-71 Score=622.72 Aligned_cols=543 Identities=12% Similarity=0.046 Sum_probs=469.4
Q ss_pred cCCCccccccccccCcccccccccccCCCCCCCCCcccccCCCCccccccCCchhHHHHHhhhcCCchhHHHHHHhc---
Q 042546 48 LPTSSHTFYSRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELS--- 124 (671)
Q Consensus 48 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~wn~~i~~~~~~~~~~~~~p~~~t~~~~l~~~~~~~~~~~~~~~~--- 124 (671)
..|+++..|++.|++++|..+|++| . ..+..|+..++..++.+|.+.+.+..+...+
T Consensus 53 ~~n~~i~~l~~~g~~~~A~~l~~~m-~-------------------~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 112 (857)
T PLN03077 53 DSNSQLRALCSHGQLEQALKLLESM-Q-------------------ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRA 112 (857)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHH-H-------------------hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 5699999999999999999999998 2 2246788899999999998877666555443
Q ss_pred ---CCCCCH---HHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC
Q 042546 125 ---GVVFTH---EMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVA 198 (671)
Q Consensus 125 ---~~~~~~---~~~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 198 (671)
+...+. +.++..+.+ +|+++.|+++|++|++ ||+++||+||.+|++.|++++|+++|++|...|+.||
T Consensus 113 ~~~~~~~~~~~~n~li~~~~~-~g~~~~A~~~f~~m~~-----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd 186 (857)
T PLN03077 113 LSSHPSLGVRLGNAMLSMFVR-FGELVHAWYVFGKMPE-----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPD 186 (857)
T ss_pred HHcCCCCCchHHHHHHHHHHh-CCChHHHHHHHhcCCC-----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 222332 344555556 7999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHh-
Q 042546 199 SHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL- 277 (671)
Q Consensus 199 ~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 277 (671)
.+||+++|++|++.+++..+. +++..+.+.|+..+..+.+.++..+
T Consensus 187 ~~t~~~ll~~~~~~~~~~~~~---------------------------------~~~~~~~~~g~~~~~~~~n~Li~~y~ 233 (857)
T PLN03077 187 VYTFPCVLRTCGGIPDLARGR---------------------------------EVHAHVVRFGFELDVDVVNALITMYV 233 (857)
T ss_pred hhHHHHHHHHhCCccchhhHH---------------------------------HHHHHHHHcCCCcccchHhHHHHHHh
Confidence 999999999999887665543 5566666666665544444444443
Q ss_pred -CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 042546 278 -GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 278 -~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 356 (671)
.|++++|.++|+.|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.
T Consensus 234 k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 234 KCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred cCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 289999999999886 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
+++..|.+.|+.||..+||++|.+|+++|..+ .+.+++++|. .||..+||++|.+|++.|++++|.++|++|.+
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~--~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG--EAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHH--HHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999544 6777887774 47888999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~ 516 (671)
.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+||+||.+|++.|++++|.++|++|.+ +|..+
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~vs 457 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-----KDVIS 457 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999865 57889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPFIKYVS 593 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~t~~~~l~ 593 (671)
|+++|.+|++.|+.++|.++|++|.. ++.||..||+++|.+|++.|.++.+.+++..|.+.|+.||. .+++.+|+
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 99999999999999999999999975 68999999999999999999999999999999999998887 45688889
Q ss_pred hcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh------------------hccHHHHHH
Q 042546 594 KSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV------------------RNHADVLNL 655 (671)
Q Consensus 594 ~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~------------------~~~~~~~~l 655 (671)
++|++++|.++|+.+ .||..+|++||.+|++.|+.++|.++|++|.+.+ +..+++.++
T Consensus 536 k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~ 611 (857)
T PLN03077 536 RCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY 611 (857)
T ss_pred HcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence 999999999998887 4788899999999999999999999999887532 346788889
Q ss_pred HHhhh-cCCCCCCCcCC
Q 042546 656 LYSKK-SGGDSAPAVTA 671 (671)
Q Consensus 656 ~~~m~-~~g~~p~~~t~ 671 (671)
|+.|+ +.|+.||..||
T Consensus 612 f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 612 FHSMEEKYSITPNLKHY 628 (857)
T ss_pred HHHHHHHhCCCCchHHH
Confidence 99998 67899987775
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-67 Score=582.80 Aligned_cols=463 Identities=16% Similarity=0.195 Sum_probs=421.8
Q ss_pred HHHHHHHhc--CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042546 132 MVLKVLKNL--ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF 209 (671)
Q Consensus 132 ~~~~~l~~~--~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~ 209 (671)
.+..++.++ +|++++|+++|++|++..-+.++...++.++.+|++.|.+++|+.+|+.|.. ||..||+.+|.+|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 344444433 5899999999999998444567888888999999999999999999999974 8999999999999
Q ss_pred HHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHH
Q 042546 210 EKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFR 289 (671)
Q Consensus 210 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~ 289 (671)
++. |+++.|.++|+
T Consensus 448 ~k~------------------------------------------------------------------g~~e~A~~lf~ 461 (1060)
T PLN03218 448 ASS------------------------------------------------------------------QDIDGALRVLR 461 (1060)
T ss_pred HhC------------------------------------------------------------------cCHHHHHHHHH
Confidence 987 67788899999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC
Q 042546 290 WAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP 369 (671)
Q Consensus 290 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p 369 (671)
.|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+.|+.|
T Consensus 462 ~M~~-~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P 540 (1060)
T PLN03218 462 LVQE-AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP 540 (1060)
T ss_pred HHHH-cCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 9987 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 370 SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE--NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447 (671)
Q Consensus 370 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 447 (671)
|..||+.+|.+|++.|.. +.+.+++++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+||
T Consensus 541 D~vTYnsLI~a~~k~G~~--deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn 618 (1060)
T PLN03218 541 DRVVFNALISACGQSGAV--DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618 (1060)
T ss_pred CHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence 999999999999999954 478899999976 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 042546 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527 (671)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 527 (671)
++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|+++
T Consensus 619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHH
Q 042546 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAF 604 (671)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~ 604 (671)
|++++|.++|++|.. .++.||..+|++||.+|++.|++++|+++|++|.+.|+.||..|| +.+|++.|++++|.++
T Consensus 698 G~~eeA~~lf~eM~~-~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 698 KNWKKALELYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999987 489999999999999999999999999999999999999999887 6788999999999999
Q ss_pred HHHhhhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh--------hhccHHHHHHHHhhhcCCCCCCCcCC
Q 042546 605 LKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY--------VRNHADVLNLLYSKKSGGDSAPAVTA 671 (671)
Q Consensus 605 ~~~m~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------~~~~~~~~~l~~~m~~~g~~p~~~t~ 671 (671)
|++|.+.+. ||..+|++++..|.+ ++++|.++.+.+... ..-...++.+|++|.+.|+.||.+||
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 999999654 999999999976542 455555554332211 12246799999999999999999886
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-64 Score=552.82 Aligned_cols=485 Identities=13% Similarity=0.120 Sum_probs=441.3
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 042546 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKE 212 (671)
Q Consensus 133 ~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 212 (671)
.+..+.. .|++++|+++|++|....++.||..+|+++|.+|++.++++.|.+++..|.+.|+.||..+|+.++.+|++.
T Consensus 93 ~i~~l~~-~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~ 171 (697)
T PLN03081 93 QIEKLVA-CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC 171 (697)
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence 3334445 699999999999999866688999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 213 GLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 213 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
|++++|.++ |++|+.++.+. .+.++..+.+. |++++|+++|++|.
T Consensus 172 g~~~~A~~l---f~~m~~~~~~t------------------------------~n~li~~~~~~--g~~~~A~~lf~~M~ 216 (697)
T PLN03081 172 GMLIDARRL---FDEMPERNLAS------------------------------WGTIIGGLVDA--GNYREAFALFREMW 216 (697)
T ss_pred CCHHHHHHH---HhcCCCCCeee------------------------------HHHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 998887664 44554443321 12233344443 99999999999998
Q ss_pred HcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH
Q 042546 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN 372 (671)
Q Consensus 293 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~ 372 (671)
+ .|+.||..+|+.++.+|++.|..+.+.+++..|.+.|+.||..+|++||++|++.|++++|.++|++|. .+|.+
T Consensus 217 ~-~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~v 291 (697)
T PLN03081 217 E-DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTV 291 (697)
T ss_pred H-hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChh
Confidence 7 689999999999999999999999999999999999999999999999999999999999999999996 47999
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452 (671)
Q Consensus 373 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 452 (671)
+||++|.+|++.|..+ .+.+++++|.+.|+.||..||+++|.+|++.|++++|.+++..|.+.|+.||..+||+||++
T Consensus 292 t~n~li~~y~~~g~~~--eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 292 AWNSMLAGYALHGYSE--EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred HHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 9999999999999554 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532 (671)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 532 (671)
|++.|++++|.++|++|. .||.++||+||.+|++.|+.++|.++|++|.+ .|+.||..||+++|.+|++.|.+++
T Consensus 370 y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~ 444 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQ 444 (697)
T ss_pred HHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHH
Confidence 999999999999999997 58999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhh
Q 042546 533 ACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609 (671)
Q Consensus 533 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~ 609 (671)
|.++|+.|.+++++.|+..+|++|+++|++.|++++|.+++++| ++.|+..+| +.+|+..|+++.|..+++++.
T Consensus 445 a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 445 GWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99999999987899999999999999999999999999999877 578998766 677889999999999999998
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhh------------------------------ccHHHHHHHHhh
Q 042546 610 SKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR------------------------------NHADVLNLLYSK 659 (671)
Q Consensus 610 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~------------------------------~~~~~~~l~~~m 659 (671)
...+.+..+|..|+++|++.|++++|.+++++|.+.+- .+..+..+..+|
T Consensus 522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 601 (697)
T PLN03081 522 GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI 601 (697)
T ss_pred CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHH
Confidence 77767788999999999999999999999999987541 134567899999
Q ss_pred hcCCCCCCC
Q 042546 660 KSGGDSAPA 668 (671)
Q Consensus 660 ~~~g~~p~~ 668 (671)
++.|+.||.
T Consensus 602 ~~~gy~~~~ 610 (697)
T PLN03081 602 SEYGYVAEE 610 (697)
T ss_pred HHcCCCCCc
Confidence 999999985
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-62 Score=536.87 Aligned_cols=450 Identities=13% Similarity=0.089 Sum_probs=395.1
Q ss_pred CCCCCCCCCcccccCCCCcc-------------ccccCCchhHHHHHhhhcCCchhHH------HHHHhcCCCCCHHHHH
Q 042546 74 DPKNPNFRNPMICSYSSEPA-------------MEQKESDFTVVSDIFYKFSDVNDIS------KQLELSGVVFTHEMVL 134 (671)
Q Consensus 74 ~~~~~~~wn~~i~~~~~~~~-------------~~~~~p~~~t~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~ 134 (671)
..++.++||++|.+|.+.+. ..+..||..||..++.+|...+.+. ..+...|..++..++.
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 33455566666666655432 1235789999999999998775544 4445556666655444
Q ss_pred HH---HHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 042546 135 KV---LKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEK 211 (671)
Q Consensus 135 ~~---l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 211 (671)
.+ +.+ +|++++|+++|++|++ ||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++
T Consensus 163 ~Li~~y~k-~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 163 RVLLMHVK-CGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHHhc-CCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 44 444 7999999999999998 99999999999999999999999999999999999999999999999998
Q ss_pred cCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHH
Q 042546 212 EGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA 291 (671)
Q Consensus 212 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~ 291 (671)
.| ..+.+.+++..+
T Consensus 237 ~~------------------------------------------------------------------~~~~~~~l~~~~ 250 (697)
T PLN03081 237 LG------------------------------------------------------------------SARAGQQLHCCV 250 (697)
T ss_pred CC------------------------------------------------------------------cHHHHHHHHHHH
Confidence 85 445556666666
Q ss_pred HHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 042546 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371 (671)
Q Consensus 292 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 371 (671)
.+ .|+.||..+||+||++|+++|++++|.++|++|.. +|.++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 251 ~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 251 LK-TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HH-hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 54 67899999999999999999999999999999974 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 451 (671)
.||++++.+|++.|..+ .+.+++..+.+.|..||..+||+||++|+++|++++|.++|++|. .||..+||+||.
T Consensus 326 ~t~~~ll~a~~~~g~~~--~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~ 399 (697)
T PLN03081 326 FTFSIMIRIFSRLALLE--HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIA 399 (697)
T ss_pred HHHHHHHHHHHhccchH--HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHH
Confidence 99999999999998544 678899999999999999999999999999999999999999997 589999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531 (671)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 531 (671)
+|++.|+.++|.++|++|.+.|+.||.+||+++|.+|++.|.+++|.++|+.|.++.|+.|+..+|+++|++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999875799999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHH
Q 042546 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKG 607 (671)
Q Consensus 532 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~ 607 (671)
+|.+++++| ++.|+..+|++|+.+|...|+++.|.++++++.+ +.|+. ..++++|++.|++++|.++++.
T Consensus 480 eA~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 480 EAYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999876 5789999999999999999999999999999974 45542 4458889999999999999999
Q ss_pred hhhCC
Q 042546 608 MTSKR 612 (671)
Q Consensus 608 m~~~~ 612 (671)
|.+++
T Consensus 554 m~~~g 558 (697)
T PLN03081 554 LKRKG 558 (697)
T ss_pred HHHcC
Confidence 99864
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-24 Score=250.48 Aligned_cols=541 Identities=13% Similarity=0.050 Sum_probs=384.0
Q ss_pred CCccccccccccCccccccccccc--CCCCCCCCCcccccCCCCccc----------cccCCchhHHHHHh----hhcCC
Q 042546 50 TSSHTFYSRFSRLPICYSRLINLI--DPKNPNFRNPMICSYSSEPAM----------EQKESDFTVVSDIF----YKFSD 113 (671)
Q Consensus 50 ~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~~wn~~i~~~~~~~~~----------~~~~p~~~t~~~~l----~~~~~ 113 (671)
..+...|.+.|++++|...|..++ .+.+...|+.+...|.+.+.. ....|+.......+ ...++
T Consensus 333 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 333 RLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 456677888888888888888764 334455666666656544321 11223222211111 11111
Q ss_pred chh----HHHHHHhcCCCCCHH-HHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHH
Q 042546 114 VND----ISKQLELSGVVFTHE-MVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVD 188 (671)
Q Consensus 114 ~~~----~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~ 188 (671)
... +.......+...... .....+.. .|++++|+.+++.+.... .++..+|+.+...+...|++++|.+.|+
T Consensus 413 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELGRADLLLILSYLR-SGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFE 489 (899)
T ss_pred hHHHHHHHHHHHhhCCcchhhHHHHHHHHHh-cCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 111 111111111111111 11122222 466666666666665422 2345566666666666666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChH
Q 042546 189 VMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSND 268 (671)
Q Consensus 189 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (671)
++.+.. +.+...+..+...+...|+++++....+......+.+.. ....
T Consensus 490 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------------------~~~~ 538 (899)
T TIGR02917 490 KALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR------------------------------AILA 538 (899)
T ss_pred HHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH------------------------------HHHH
Confidence 665542 223445555566666666666655443322221111110 0001
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042546 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348 (671)
Q Consensus 269 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 348 (671)
+...+.. .|+.++|...|+++.... +.+...+..+...|.+.|++++|.++++.+.+.. +.+..+|..+..++.+
T Consensus 539 l~~~~~~--~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 539 LAGLYLR--TGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHH--cCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 1111112 389999999999987533 5677888999999999999999999999998753 4578899999999999
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN 428 (671)
Q Consensus 349 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 428 (671)
.|++++|...|+.+.+.. ..+...+..+...+...|+.+ .+...++.+.+. .+.+..++..+...+...|++++|.
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYA--KAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH--HHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998643 234566777888888877544 555666665543 3445778999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042546 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE 508 (671)
Q Consensus 429 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 508 (671)
++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+...+ |+..++..+...+.+.|+.++|.+.++.+.+ .
T Consensus 690 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-~ 765 (899)
T TIGR02917 690 KIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK-T 765 (899)
T ss_pred HHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH-h
Confidence 9999999876 5678889999999999999999999999998874 5557788899999999999999999999987 3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--
Q 042546 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-- 586 (671)
Q Consensus 509 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-- 586 (671)
.+.+...+..+...|.+.|+.++|...|+++.+. .+++...++.+...+...|+ .+|++.++++.+. .|+..
T Consensus 766 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~ 839 (899)
T TIGR02917 766 -HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAI 839 (899)
T ss_pred -CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHH
Confidence 3457788999999999999999999999999874 35677889999999999999 8899999998864 45443
Q ss_pred --HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 587 --PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 587 --t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
++...+.+.|++++|.++++++.+..+.+..++..+..+|.+.|++++|.+++++|.
T Consensus 840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 840 LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 235566789999999999999999887899999999999999999999999999875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-22 Score=232.87 Aligned_cols=486 Identities=11% Similarity=0.018 Sum_probs=362.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|...|+.+.+..+ .+...+..+...+.+.|++++|...++++.... ..+..++..+...+.+.|+++++..
T Consensus 308 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 384 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYAP--NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAE 384 (899)
T ss_pred cCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 5788888888887766322 345677778888889999999999998887664 3467788888888999999888887
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHH--HHHhhcccccC---hHHHHHHHHHhCCChHHHHHHHHHHHHcC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVE--RQLRDLNVTFS---NDLVKFVVDKLGDEPKKALIFFRWAEESG 295 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~A~~~f~~~~~~~ 295 (671)
..+...+....+.. ........+...+.....+. ....+...... ..+...++. .|+.++|.++++.+...
T Consensus 385 ~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 385 YLAKATELDPENAA-ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLR--SGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHhcCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHh--cCCHHHHHHHHHHHHHh-
Confidence 76655444333322 22222222233333322222 22222222111 112222232 48999999999998753
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCT 375 (671)
Q Consensus 296 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~ 375 (671)
.+++..+|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.. ..+..++.
T Consensus 461 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 537 (899)
T TIGR02917 461 -QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAIL 537 (899)
T ss_pred -CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHH
Confidence 36678899999999999999999999999988753 3356778888889999999999999999998653 33567778
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455 (671)
Q Consensus 376 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 455 (671)
.+...+.+.|+. +.+...+..+.... +.+...+..+...|.+.|++++|..+++.+.+.. +.+..+|..+...|.+
T Consensus 538 ~l~~~~~~~~~~--~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 538 ALAGLYLRTGNE--EEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHcCCH--HHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 888888887744 34555666555432 3455678888999999999999999999988654 5677889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 456 AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACK 535 (671)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 535 (671)
.|++++|...|+++.+.. +.+...+..+...+.+.|++++|...++++.+ . .+.+..++..+...+...|++++|.+
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE-L-KPDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999988764 34667788888999999999999999999876 2 23457788889999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 042546 536 FVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-DPFIKYVSKSGTSDDAIAFLKGMTSKRFP 614 (671)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~t~~~~l~~~g~~~~A~~~~~~m~~~~~p 614 (671)
+++.+... ..++...+..+...+.+.|++++|.+.++++...+..++. ..+...+.+.|+.++|.+.++.+.+..+.
T Consensus 691 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 691 IAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999764 3456677888888889999999999999998875433321 12356677889999999999998888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 615 SMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 615 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
+...+..+...|.+.|++++|.++|+++.+.
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 8888999999999999999999999887654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-18 Score=178.29 Aligned_cols=314 Identities=13% Similarity=0.111 Sum_probs=200.5
Q ss_pred hcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---H
Q 042546 260 DLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME---M 336 (671)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~ 336 (671)
+....+....+........|++++|...|.++.+.. +.+..+|..+...+.+.|++++|..+++.+...+..++ .
T Consensus 30 ~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 30 KESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred hhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 333334444444444444699999999999998642 45667899999999999999999999999987643222 3
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCH----HHHH
Q 042546 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD----AMLN 412 (671)
Q Consensus 337 ~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 412 (671)
.++..+...|.+.|++++|..+|.++.+. ..++..+++.+...+.+.|+.+ .+.+.++.+.+.+..++. ..+.
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~ 184 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQ--KAIDVAERLEKLGGDSLRVEIAHFYC 184 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHH--HHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 56788899999999999999999999864 2234556666666666665433 334444444443322211 1334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
.+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......+++.+..+|.+.|
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG 263 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence 45556666666666666666666543 23344556666666666666666666666665432222345566666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV---QRGFKDA 569 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~---~g~~~~A 569 (671)
++++|.+.++++.+ . .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++
T Consensus 264 ~~~~A~~~l~~~~~-~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 264 DEAEGLEFLRRALE-E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred CHHHHHHHHHHHHH-h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhH
Confidence 66666666666655 2 345455566666666666666666666666542 4666666666655543 3466666
Q ss_pred HHHHHHHHhCCCCCCH
Q 042546 570 LSLLCLMKDHGFPPFV 585 (671)
Q Consensus 570 ~~l~~~m~~~~~~p~~ 585 (671)
+.++++|.+.++.|+.
T Consensus 338 ~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 338 LLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 6666666665555544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-18 Score=175.49 Aligned_cols=313 Identities=13% Similarity=0.093 Sum_probs=238.6
Q ss_pred CCCCCHHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCH---HH
Q 042546 125 GVVFTHEMVLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVAS---HV 201 (671)
Q Consensus 125 ~~~~~~~~~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~---~t 201 (671)
...........+.....|++++|...|..+.+..+ .+..+|..+...+.+.|++++|..+++.+...+..++. .+
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~ 109 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDP--ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLA 109 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 33444444444443346899999999999987322 35668888999999999999999999998876432221 23
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCCh
Q 042546 202 RNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEP 281 (671)
Q Consensus 202 ~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (671)
+..+...|.+. |++
T Consensus 110 ~~~La~~~~~~------------------------------------------------------------------g~~ 123 (389)
T PRK11788 110 LQELGQDYLKA------------------------------------------------------------------GLL 123 (389)
T ss_pred HHHHHHHHHHC------------------------------------------------------------------CCH
Confidence 44444444444 678
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCChHHHHH
Q 042546 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME----METCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 282 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~ 357 (671)
++|..+|+.+.+. .+++..+++.++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++|..
T Consensus 124 ~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 124 DRAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 8888888888753 256788999999999999999999999999988653332 2245667778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437 (671)
Q Consensus 358 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (671)
.|+++.+. .|+ +...+..+...|.+.|++++|.++|+++.+.
T Consensus 202 ~~~~al~~--~p~------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 202 LLKKALAA--DPQ------------------------------------CVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHhH--CcC------------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99998753 122 1234667778889999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 042546 438 GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517 (671)
Q Consensus 438 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~ 517 (671)
+......+++.++.+|.+.|++++|...++++.+. .|+...+..+...+.+.|++++|.++++++.+ . .|+..++
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-~--~P~~~~~ 318 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR-R--HPSLRGF 318 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH-h--CcCHHHH
Confidence 42222467888999999999999999999999876 46667778899999999999999999999877 3 6888899
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCCCHH
Q 042546 518 DLLVNTYCS---KNRAIDACKFVHNCVREYDLKPWHT 551 (671)
Q Consensus 518 ~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~ 551 (671)
+.++..+.. .|+.+++..++++|.++ ++.|+..
T Consensus 319 ~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p~ 354 (389)
T PRK11788 319 HRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKPR 354 (389)
T ss_pred HHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCCC
Confidence 988888775 56899999999999875 5666654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-15 Score=170.69 Aligned_cols=220 Identities=12% Similarity=0.035 Sum_probs=133.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...++++.+.. +.+...+..+...+...
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhC
Confidence 344555667788888888888877654 3355667777888888888888888888877643 22333344444445667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 492 GDLDKAADCFQKMVEKEGTSHAGY---------AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 492 g~~~~a~~~~~~m~~~~g~~p~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
++.++|...++.+.. ....++.. .+..+...+...|+.++|..+++. ..++...+..+...+.+
T Consensus 543 ~~~~~Al~~l~~l~~-~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~ 615 (1157)
T PRK11447 543 DRDRAALAHLNTLPR-AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQ 615 (1157)
T ss_pred CCHHHHHHHHHhCCc-hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHH
Confidence 777777777766543 22222111 112334455566666666666551 12233445556666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 042546 563 QRGFKDALSLLCLMKDHGFPPFVDP----FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638 (671)
Q Consensus 563 ~g~~~~A~~l~~~m~~~~~~p~~~t----~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 638 (671)
.|+.++|++.|++..+. .|+... +...|...|+.++|+..++......+.+...+..+..++.+.|++++|.++
T Consensus 616 ~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 616 RGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777777766653 344321 244455667777777777766655444555666666667777777777777
Q ss_pred HHhc
Q 042546 639 LSKC 642 (671)
Q Consensus 639 ~~~m 642 (671)
++++
T Consensus 694 ~~~a 697 (1157)
T PRK11447 694 FNRL 697 (1157)
T ss_pred HHHH
Confidence 7664
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.8e-14 Score=161.87 Aligned_cols=340 Identities=12% Similarity=0.041 Sum_probs=208.3
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCC-CHHHHHHHH--------
Q 042546 308 ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKP-SVNCCTFLL-------- 378 (671)
Q Consensus 308 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p-~~~~~~~ll-------- 378 (671)
-..+...|++++|...|++..+.. +-+...+..+...+.+.|++++|+..|++..+..... +...+..++
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 445667788888888888887753 2267778888888888888888888888877543221 212222211
Q ss_pred ----HHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--
Q 042546 379 ----RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR-- 452 (671)
Q Consensus 379 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-- 452 (671)
..+.+.| +.+.+...+++..+.. +.+...+..+...|...|++++|++.|++..+.. +.+...+..+...
T Consensus 355 ~~~g~~~~~~g--~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 355 IQQGDAALKAN--NLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 1223333 3445556666655542 3345566777788888888888888888877653 2333344433333
Q ss_pred ----------------------------------------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 453 ----------------------------------------LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 453 ----------------------------------------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
+...|++++|.+.|++..+.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 334555555555555555442 113334445555555666
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhc
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT---------TYEELIKNLLVQ 563 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~---------~~~~li~~~~~~ 563 (671)
++++|...++++.+ .. +.+...+..+...+...|+.++|...++.+... ...++.. .+..+...+...
T Consensus 510 ~~~~A~~~l~~al~-~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 510 QRSQADALMRRLAQ-QK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred CHHHHHHHHHHHHH-cC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 66666666665544 11 112222222333344555566665555544321 1111111 112334556667
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 564 RGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 564 g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
|+.++|+++++. .|+. ..+...+.+.|+.++|+..++++....|.+...+..++.+|...|++++|.+.+
T Consensus 587 G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777662 2222 233566678999999999999999988888999999999999999999999999
Q ss_pred HhchHh-----------------hhccHHHHHHHHhhhcC
Q 042546 640 SKCPRY-----------------VRNHADVLNLLYSKKSG 662 (671)
Q Consensus 640 ~~m~~~-----------------~~~~~~~~~l~~~m~~~ 662 (671)
++.+.. .+...++..+|.+....
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 986542 13467788888877654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-13 Score=152.96 Aligned_cols=475 Identities=10% Similarity=0.013 Sum_probs=272.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|+..|+...+..+ -+...+..+...|.+.|+.++|+..+++..+. .|+...|..++..+ ++.+++..
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 5899999999999887444 23677788899999999999999999998877 45655555555333 66666665
Q ss_pred HHH-HHHcCCCCChHHHHHHHH------HHHHhcCCChhHHHHHHhhcccccChHHHHHH-HHHh--CCChHHHHHHHHH
Q 042546 221 LKG-IFATGSIDNSIEKVASRI------CKVVRSDIWGDDVERQLRDLNVTFSNDLVKFV-VDKL--GDEPKKALIFFRW 290 (671)
Q Consensus 221 ~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~A~~~f~~ 290 (671)
..+ ++...+....+....... .++.+.....+.+. .........+..+... .+.+ .+++++|++.+..
T Consensus 130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 544 444444444443333332 22333322222332 2222222223333333 2222 3788888888888
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHcc-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC-
Q 042546 291 AEESGFVKHDESSYNAMASVLGRE-DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK- 368 (671)
Q Consensus 291 ~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~- 368 (671)
+.+.. ..+..-...|-..|.+. ++ +++..++.. .++-|...+..+...|.+.|+.++|.++++++...-..
T Consensus 208 L~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 208 ARQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 87643 33444455555566663 55 666666443 22346677777777777777777777777766432111
Q ss_pred CCHHHHHHHH------------------------------HHHHhcCccc------------------------------
Q 042546 369 PSVNCCTFLL------------------------------RKIVVSKQLD------------------------------ 388 (671)
Q Consensus 369 p~~~~~~~ll------------------------------~~~~~~~~~~------------------------------ 388 (671)
|...++--++ ..+.+.+..+
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 2222111111 0111000000
Q ss_pred -------------------------------HHHHHHHHHHHHH------------------------------------
Q 042546 389 -------------------------------MRLFSKVVRVFRE------------------------------------ 401 (671)
Q Consensus 389 -------------------------------~~~~~~~~~~~~~------------------------------------ 401 (671)
...+.++++....
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 0000001000000
Q ss_pred ---------------------------cCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 402 ---------------------------NGN-VL--TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451 (671)
Q Consensus 402 ---------------------------~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 451 (671)
.+. ++ +...|..+..++.. ++.++|...+.+.... .|+......+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~ 517 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAY 517 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHH
Confidence 000 11 23333444444443 4555666655555443 244433333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531 (671)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 531 (671)
.+.+.|++++|...|+++... .|+...+..+...+.+.|+.++|.+.++...+ .. .++...+..+...+.+.|+++
T Consensus 518 al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~-l~-P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 518 QAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ-RG-LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cC-CccHHHHHHHHHHHHhCCCHH
Confidence 445677777777777776543 34444555666667777777777777777766 33 222222333333344558888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHH
Q 042546 532 DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKG 607 (671)
Q Consensus 532 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~ 607 (671)
+|...+++... ..|+...|..+...+.+.|+.++|++.+++..+. .|+.... ...+...|+.++|+..+++
T Consensus 594 eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 594 LALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888877764 3566777777777788888888888888877753 5665433 3445677888888888888
Q ss_pred hhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 608 MTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 608 m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
..+..|.+...+..+..++.+.|++++|+..+++..
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 877777777778888888888888888888887754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.2e-14 Score=152.37 Aligned_cols=248 Identities=14% Similarity=0.031 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 391 LFSKVVRVFRENG-NVL-TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDH 468 (671)
Q Consensus 391 ~~~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (671)
.+.+.++.....+ ..| +...++.+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++
T Consensus 312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 390 (615)
T TIGR00990 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDK 390 (615)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555555443 223 34567888888899999999999999988764 33466888899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q 042546 469 MEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548 (671)
Q Consensus 469 m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 548 (671)
..+.. +.+...|..+...+...|++++|...|++..+ .. +.+...+..+...+.+.|++++|...|++.... .+.
T Consensus 391 al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~-l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~ 465 (615)
T TIGR00990 391 ALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID-LD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPE 465 (615)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence 98764 34577888999999999999999999999987 22 234666777888899999999999999998763 333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHH
Q 042546 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-----DPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619 (671)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-----~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~ 619 (671)
+...|+.+...+...|++++|++.|++..+.....+. ..+ ...+...|++++|..++++.....+.+...+
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~ 545 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAV 545 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 4678888899999999999999999998764321111 111 1122346999999999999888777677789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 620 LCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 620 ~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
..+..++.+.|++++|.++|++..+
T Consensus 546 ~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 546 ATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999998643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-13 Score=131.21 Aligned_cols=429 Identities=13% Similarity=0.087 Sum_probs=282.6
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 042546 164 SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICK 243 (671)
Q Consensus 164 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (671)
+++=|.++. +..+|.+.++.-+|+.|...|+..+...-..+++..+-.+..+-...-.+.|-.|.....-
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~--------- 185 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED--------- 185 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc---------
Confidence 445555555 4557889999999999999999888887777776544332211111111122222111000
Q ss_pred HHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 042546 244 VVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKV 323 (671)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 323 (671)
....|.. |.+ |.-+|+.. +....+|.+||.|+|+-...+.|.++
T Consensus 186 --S~~sWK~--------------------------G~v--AdL~~E~~------PKT~et~s~mI~Gl~K~~~~ERA~~L 229 (625)
T KOG4422|consen 186 --STSSWKS--------------------------GAV--ADLLFETL------PKTDETVSIMIAGLCKFSSLERAREL 229 (625)
T ss_pred --ccccccc--------------------------ccH--HHHHHhhc------CCCchhHHHHHHHHHHHHhHHHHHHH
Confidence 0000100 322 33333322 55668888888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHH
Q 042546 324 LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD--MRLFSKVVRVFRE 401 (671)
Q Consensus 324 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~--~~~~~~~~~~~~~ 401 (671)
+.+-.....+.+..+||.+|.+-.-. ...++..+|....+.||..|+|++++..++.|+.. ...+.+++.+|.+
T Consensus 230 ~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKe 305 (625)
T KOG4422|consen 230 YKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKE 305 (625)
T ss_pred HHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 88888877788888888888765432 33788888888888888888888888888888655 4677888888888
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 402 NGNVLTDAMLNSVLKALISVGRMGE-CNKILKAMEE----GGFI----ASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 402 ~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
-|+.|...+|.-+|..+++.++..+ |..+..++.. ..++ .|..-+..-++.|.+..+.+-|.++..-+...
T Consensus 306 iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg 385 (625)
T KOG4422|consen 306 IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTG 385 (625)
T ss_pred hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcC
Confidence 8888888888888888888777643 3344444332 2222 24556667777888888888888877665432
Q ss_pred C----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 042546 473 G----SDVGD---KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545 (671)
Q Consensus 473 g----~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (671)
. +.|+. .-|..+....|+....+.-..+|+.|.- .-+-|+..+...++++..-.|+++-.-+++.++.. +|
T Consensus 386 ~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP-~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~g 463 (625)
T KOG4422|consen 386 DNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP-SAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YG 463 (625)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hh
Confidence 1 23332 3356677778888888888888888887 77788888888888888888888888888887765 45
Q ss_pred CCCCHHHHHHHHHHHHhcC-C-------------------HHHH-HHHHHHHHhCCCCCCHHH-HHHHHHhcCChHHHHH
Q 042546 546 LKPWHTTYEELIKNLLVQR-G-------------------FKDA-LSLLCLMKDHGFPPFVDP-FIKYVSKSGTSDDAIA 603 (671)
Q Consensus 546 ~~p~~~~~~~li~~~~~~g-~-------------------~~~A-~~l~~~m~~~~~~p~~~t-~~~~l~~~g~~~~A~~ 603 (671)
..-+...-..++.-+++.. + +-++ ..--.+|.+..+.|.... ....+.+.|+.++|.+
T Consensus 464 ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e 543 (625)
T KOG4422|consen 464 HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWE 543 (625)
T ss_pred hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHH
Confidence 3333333333444444322 1 1111 111224445555555433 3455679999999999
Q ss_pred HHHHhhhC-C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 604 FLKGMTSK-R----FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 604 ~~~~m~~~-~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
+|..+.++ . .|......-+++.-.+......|...++-|..
T Consensus 544 ~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 544 MLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99988653 2 24444455677777888889999999888754
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.5e-14 Score=152.59 Aligned_cols=317 Identities=13% Similarity=0.088 Sum_probs=209.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 357 (671)
.|+.++|+.+++...... +-+...+..+.......|++++|...|+++.... +.+...+..+...+.+.|++++|..
T Consensus 55 ~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred cCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 499999999999887643 4445666667777788999999999999998863 2256778888899999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 358 LYEFAMACKNKPS-VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 358 l~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
.+++..+. .|+ ...+..+...+...|+.+ .+...++.+...... +...+..+ ..+...|++++|...++.+.+
T Consensus 132 ~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~--eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 132 LAEQAWLA--FSGNSQIFALHLRTLVLMDKEL--QAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCChH--HHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 99999864 443 445555666666666444 333444443332222 22222222 336677777777777777665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCC
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK----AADCFQKMVEKEGTSH 512 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~g~~p 512 (671)
..-.++...+..+...+.+.|++++|...+++..+.. +.+...+..+...+...|+.++ |...|++..+ .. +.
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-l~-P~ 282 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-FN-SD 282 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-hC-CC
Confidence 4322334444555566777777777777777777654 2345566667777777777764 6777777765 21 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---
Q 042546 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588 (671)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~--- 588 (671)
+...+..+...+.+.|++++|...+++.... .|+ ...+..+...|.+.|++++|++.++++.+. .|+...+
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~ 357 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRY 357 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHH
Confidence 4556677777777777777777777777653 233 345556666777777777777777777653 3443221
Q ss_pred -HHHHHhcCChHHHHHHHHHhhhC
Q 042546 589 -IKYVSKSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 589 -~~~l~~~g~~~~A~~~~~~m~~~ 611 (671)
...+...|+.++|...|++..+.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 23456777777777777777664
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.4e-13 Score=126.15 Aligned_cols=254 Identities=11% Similarity=0.068 Sum_probs=183.6
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 042546 145 DEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGI 224 (671)
Q Consensus 145 ~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~ 224 (671)
+-|.-+|+..++ +..+|..||.|+|+--..+.|.+++++-.....+.+..+||.+|.+-+-.-
T Consensus 194 ~vAdL~~E~~PK------T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----------- 256 (625)
T KOG4422|consen 194 AVADLLFETLPK------TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----------- 256 (625)
T ss_pred cHHHHHHhhcCC------CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc-----------
Confidence 345566666554 557899999999999999999999999988888899999999997754331
Q ss_pred HHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHH
Q 042546 225 FATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSY 304 (671)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~ 304 (671)
..++..+|.. ..+.||..|+
T Consensus 257 -----------------------------------------------------------~K~Lv~EMis-qkm~Pnl~Tf 276 (625)
T KOG4422|consen 257 -----------------------------------------------------------GKKLVAEMIS-QKMTPNLFTF 276 (625)
T ss_pred -----------------------------------------------------------cHHHHHHHHH-hhcCCchHhH
Confidence 1344555554 3458999999
Q ss_pred HHHHHHHHccCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHH----hCCCCC----CH
Q 042546 305 NAMASVLGREDCIDR----FWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKE-AVDLYEFAM----ACKNKP----SV 371 (671)
Q Consensus 305 ~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-a~~l~~~m~----~~g~~p----~~ 371 (671)
|++++..++.|+++. |.+++.+|++-|++|...+|..+|..+++.++..+ |..+..+.. ...++| |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998865 56788899999999999999999999998887644 444444443 233444 33
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042546 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENG----NVLTD---AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 444 (671)
..|...++.|.... |.+++.++...+.... +.|+. .-|.-+....|+....+.-...|+.|.-+-+-|+..
T Consensus 357 ~FF~~AM~Ic~~l~--d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~ 434 (625)
T KOG4422|consen 357 KFFQSAMSICSSLR--DLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQ 434 (625)
T ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCch
Confidence 44555566665443 5556666655554311 22222 245566777788888888888888888777778888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG 477 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 477 (671)
+...++.+..-.|.++-.-+++.++...|..-+
T Consensus 435 ~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 435 TMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred hHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 888888888888888888888888887664333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.7e-13 Score=147.90 Aligned_cols=408 Identities=10% Similarity=-0.026 Sum_probs=243.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|+.++|+.++....... ..+...+..+...+.+.|++++|..+|++..+.. +.+...+..+...+...
T Consensus 28 ~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~-------- 96 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA-------- 96 (765)
T ss_pred cCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC--------
Confidence 689999999998876411 2445568888889999999999999999987662 22344454454555444
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
|+.++|+..+++..+.. +.+
T Consensus 97 ----------------------------------------------------------g~~~eA~~~l~~~l~~~--P~~ 116 (765)
T PRK10049 97 ----------------------------------------------------------GQYDEALVKAKQLVSGA--PDK 116 (765)
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHhC--CCC
Confidence 67777777787776532 445
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 380 (671)
.. |..+...+...|+.++|+..+++..+.. +-+...+..+..++...+..++|++.++.... .|+... -+..
T Consensus 117 ~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~---~l~~ 188 (765)
T PRK10049 117 AN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKR---DLEA 188 (765)
T ss_pred HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHH---HHHH
Confidence 56 8888889999999999999999998863 22455666777888888999999988876553 333100 0000
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHH
Q 042546 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM---GECNKILKAMEEG-GFIASSN-MK----SKIAF 451 (671)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~-g~~~~~~-~~----~~li~ 451 (671)
......++ ..+.......+++ ++|++.++.+.+. ...|+.. .+ ...+.
T Consensus 189 ---------~~~~~~~r--------------~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 189 ---------DAAAELVR--------------LSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred ---------HHHHHHHH--------------hhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 00000000 0000001111222 5566666666643 1122211 11 11123
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhcC
Q 042546 452 RLSSAGKKDEANEFMDHMEASGSD-VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH--AGYAIDLLVNTYCSKN 528 (671)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~~~~li~~~~~~g 528 (671)
++...|++++|...|+.+.+.+.. |+. .-..+...|...|++++|...|+++.+.....+ .......+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 344557777777777777665421 221 112235567777777777777777654111110 1234455555666777
Q ss_pred CHHHHHHHHHHHHHhCC----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHH
Q 042546 529 RAIDACKFVHNCVREYD----------LKPW---HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKY 591 (671)
Q Consensus 529 ~~~~A~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~ 591 (671)
++++|..+++.+..... -.|+ ...+..+...+...|+.++|+++++++... .|+...+ ..+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l 402 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASV 402 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 77777777777664210 1122 123344555666777777777777777653 4554332 344
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHH
Q 042546 592 VSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVL 653 (671)
Q Consensus 592 l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 653 (671)
+...|+.++|++.+++.....|.+...+...+..+.+.|++++|+.+++++....+..+.+.
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 45677777777777777776665666666677777777777777777777765554444443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-12 Score=143.21 Aligned_cols=416 Identities=9% Similarity=-0.015 Sum_probs=242.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|+++.|+..|+.... ..|+...|..+-.+|.+.|++++|++.++...+.. +.+...+..+-.++...|++++|..
T Consensus 140 ~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~ 215 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALL 215 (615)
T ss_pred cCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5999999999999876 34788889999999999999999999999998763 2356688888899999999999876
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccc-cChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVT-FSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~ 299 (671)
-..........+... ....+....... ........+...... .....+..++.... .+.+..-+.... ...+
T Consensus 216 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~-a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~ 288 (615)
T TIGR00990 216 DLTASCIIDGFRNEQ-SAQAVERLLKKF-AESKAKEILETKPENLPSVTFVGNYLQSFR--PKPRPAGLEDSN---ELDE 288 (615)
T ss_pred HHHHHHHhCCCccHH-HHHHHHHHHHHH-HHHHHHHHHhcCCCCCCCHHHHHHHHHHcc--CCcchhhhhccc---cccc
Confidence 443332222221111 000011100000 000011111111111 12222222222211 001111111000 0011
Q ss_pred CH-HHHHHHHHH---HHccCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHH
Q 042546 300 DE-SSYNAMASV---LGREDCIDRFWKVLDEMRSKG-YEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373 (671)
Q Consensus 300 ~~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 373 (671)
+. ..+..+... ....+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|+..|++..+. .|+.
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~-- 364 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV-- 364 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc--
Confidence 10 011111100 123467888888888887654 233 3556777777777888888888888877643 2221
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453 (671)
Q Consensus 374 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 453 (671)
...|..+...+...|++++|...|++..+.. +.+..+|..+...|
T Consensus 365 ----------------------------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 365 ----------------------------------TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred ----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1235555566677777777877777776653 34566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533 (671)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 533 (671)
...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+ . .+-+...++.+...+...|++++|
T Consensus 410 ~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-~-~P~~~~~~~~lg~~~~~~g~~~~A 486 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-N-FPEAPDVYNYYGELLLDQNKFDEA 486 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHccCHHHH
Confidence 77788888888877777653 23455566677777777888888888777765 2 223455677777777777888888
Q ss_pred HHHHHHHHHhCC-CC---CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHhcCChHHHHHH
Q 042546 534 CKFVHNCVREYD-LK---PWHT-TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD----PFIKYVSKSGTSDDAIAF 604 (671)
Q Consensus 534 ~~~~~~m~~~~~-~~---p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~----t~~~~l~~~g~~~~A~~~ 604 (671)
.+.|+....... .. ++.. .++.....+...|++++|.+++++..+. .|+.. .+...+.+.|++++|.++
T Consensus 487 ~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~ 564 (615)
T TIGR00990 487 IEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKL 564 (615)
T ss_pred HHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 877777654210 00 0111 1222222333457788888887776653 34442 234555677888888888
Q ss_pred HHHhhhC
Q 042546 605 LKGMTSK 611 (671)
Q Consensus 605 ~~~m~~~ 611 (671)
|++..+.
T Consensus 565 ~e~A~~l 571 (615)
T TIGR00990 565 FERAAEL 571 (615)
T ss_pred HHHHHHH
Confidence 7777653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-13 Score=147.24 Aligned_cols=253 Identities=12% Similarity=0.033 Sum_probs=184.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
|+.++|...|+...... +.+...|..+...+.+.|++++|...++.+....-. +...+..+ ..+.+.|++++|...
T Consensus 124 g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHH
Confidence 56677777777665422 344566666777777777777777777766554221 22222222 235666777777776
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
++.+.+ ....++...+..+..++.+.|++++|...|++..+..
T Consensus 200 ~~~~l~-------------------------------------~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~ 242 (656)
T PRK15174 200 ARALLP-------------------------------------FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG 242 (656)
T ss_pred HHHHHh-------------------------------------cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 666543 2122333455566788999999999999999999765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 042546 439 FIASSNMKSKIAFRLSSAGKKDE----ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514 (671)
Q Consensus 439 ~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~ 514 (671)
+.+...+..+...|.+.|++++ |...|++..+.. +.+...+..+...+.+.|++++|...+++..+ .. +.+.
T Consensus 243 -p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~-l~-P~~~ 318 (656)
T PRK15174 243 -LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA-TH-PDLP 318 (656)
T ss_pred -CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hC-CCCH
Confidence 5567888889999999999986 899999998764 33567899999999999999999999999987 32 2235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTT-YEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
..+..+..+|.+.|++++|...|+.+... .|+... +..+..++...|+.++|.+.|++..+.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLARE---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 56777888999999999999999999864 455433 344566788999999999999998764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-11 Score=134.99 Aligned_cols=196 Identities=14% Similarity=0.009 Sum_probs=146.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCCHHHHHHHHHHH
Q 042546 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG----TSHAGYAIDLLVNTY 524 (671)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g----~~p~~~~~~~li~~~ 524 (671)
.+-++.+.|+..++++.|+.+...|......+-.++.++|...+++++|..+++.+....+ ..++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 4556778888999999999998888665667888888999999999999999998866222 233444467788888
Q ss_pred HhcCCHHHHHHHHHHHHHhCC------------CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---
Q 042546 525 CSKNRAIDACKFVHNCVREYD------------LKPWHT-TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--- 588 (671)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~------------~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~--- 588 (671)
...+++++|..+++.+.+... -.||-. .+..++..+.-.|++.+|++.++++... .|...-+
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~ 455 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIA 455 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 889999999999998876211 112222 3344566677889999999999998753 5555433
Q ss_pred -HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh
Q 042546 589 -IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 589 -~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
.+++...|...+|+..++......+.+..+....+.++...|++++|..+.+......
T Consensus 456 ~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 456 LASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 5566788999999999977777766677888888888888999999988887764443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-13 Score=134.82 Aligned_cols=377 Identities=12% Similarity=0.065 Sum_probs=280.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 042546 134 LKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEG 213 (671)
Q Consensus 134 ~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 213 (671)
.+++.. .|++++|+..++.+.+..+ ..+..|-.+-.++...|+.+.|.+.|.+..+- .|+.+-..+-+.-+.+.
T Consensus 123 aN~~ke-rg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka- 196 (966)
T KOG4626|consen 123 ANILKE-RGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKA- 196 (966)
T ss_pred HHHHHH-hchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHh-
Confidence 344454 6788888888888776222 34667777888888888888888887777655 34433332222111111
Q ss_pred ChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHH
Q 042546 214 LESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293 (671)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~ 293 (671)
.|++++|..-+.+..+
T Consensus 197 ----------------------------------------------------------------~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 197 ----------------------------------------------------------------EGRLEEAKACYLKAIE 212 (966)
T ss_pred ----------------------------------------------------------------hcccchhHHHHHHHHh
Confidence 1677777776666553
Q ss_pred cCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 042546 294 SGFVKHD-ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371 (671)
Q Consensus 294 ~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 371 (671)
. .|. .+.|+.|-..+-..|+...|++-|++.... .|+ ...|-.|-..|...+.+++|...|.+.... .|+-
T Consensus 213 ~---qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~ 285 (966)
T KOG4626|consen 213 T---QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNH 285 (966)
T ss_pred h---CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcc
Confidence 2 444 578999999999999999999999998865 565 667888888888888999998888876632 3321
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 451 (671)
.+.+..|...|-..|.+|.|++.+++..+.. +.-...|+.|..
T Consensus 286 ------------------------------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 286 ------------------------------------AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLAN 328 (966)
T ss_pred ------------------------------------hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHH
Confidence 2335556666788999999999999988754 233678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCH
Q 042546 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRA 530 (671)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~ 530 (671)
++-..|++.+|.+.+.+..... .--..+.+.|-..|...|.+++|..+|....+ +.|. ...++.|...|-..|++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccH
Confidence 9999999999999999988753 22356788899999999999999999999866 4554 34578899999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHH
Q 042546 531 IDACKFVHNCVREYDLKPWH-TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFL 605 (671)
Q Consensus 531 ~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~ 605 (671)
++|..-+++..+ ++|+. ..|+-|-..|-..|+.+.|++.+.+... +.|.. ..+.+.+...|++.+|+.-+
T Consensus 405 ~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 405 DDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 999999999874 77764 4788888889999999999999998875 45543 23466778899999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 042546 606 KGMTSKRFPSMSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 606 ~~m~~~~~p~~~~~~~l~~~~~~~g~~~ 633 (671)
+...+..+.-...|..++.++--.-+|.
T Consensus 480 ~~aLklkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 480 RTALKLKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred HHHHccCCCCchhhhHHHHHHHHHhccc
Confidence 9998866544555666665554433333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.4e-13 Score=134.68 Aligned_cols=313 Identities=12% Similarity=0.042 Sum_probs=229.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASV-LGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~ 356 (671)
|+.+.|...|....+ +.|+.....+-+.- +-..|++++|...+.+..+. .|. .+.|+.|-..+-..|+...|+
T Consensus 164 ~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~ai 238 (966)
T KOG4626|consen 164 GDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAI 238 (966)
T ss_pred CCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHH
Confidence 444455544444332 24444433332222 23346666666666555543 232 445666666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
+-|++..+ +.|+- ...|-.|-..|...+.+++|...+.+...
T Consensus 239 q~y~eAvk--ldP~f------------------------------------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 239 QHYEEAVK--LDPNF------------------------------------LDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHhhc--CCCcc------------------------------------hHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 66666553 12221 12466677788888899999998887765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~ 515 (671)
.. +-..+.+..|...|-..|.++-|+..+++..+. +|+ ...|+.|..++-..|++.+|.+.+.+... .. .--..
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~-l~-p~had 355 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR-LC-PNHAD 355 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-hC-CccHH
Confidence 43 344667888888899999999999999999876 565 46799999999999999999999999977 22 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHH
Q 042546 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP----FIK 590 (671)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t----~~~ 590 (671)
..+.|-..|...|.+++|.++|....+ +.|. ....+-|...|-+.|++++|+..+++..+ +.|+... ...
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGn 430 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGN 430 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcch
Confidence 678899999999999999999998875 4454 34678888899999999999999999885 7787532 245
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 591 YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 591 ~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.|...|+++.|...+.+.+.-.+.=...++.|..+|..+|+..+|+.-+++...
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 567889999999999999987776778899999999999999999999998643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-12 Score=141.52 Aligned_cols=379 Identities=10% Similarity=0.033 Sum_probs=265.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcC
Q 042546 169 LMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSD 248 (671)
Q Consensus 169 ~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (671)
-.+......|+.++|++++.+..... ..+...+..+-.++...
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~------------------------------------ 62 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNL------------------------------------ 62 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc------------------------------------
Confidence 34566678899999999999887622 33455577776666666
Q ss_pred CChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 042546 249 IWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMR 328 (671)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 328 (671)
|+.++|..+|+...... +.+...+..+...+.+.|++++|...+++..
T Consensus 63 ------------------------------g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 63 ------------------------------KQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred ------------------------------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56777777777765432 4557778888999999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCH
Q 042546 329 SKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTD 408 (671)
Q Consensus 329 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (671)
+.. +.+.. +..+..++...|+.++|+..++++.+. .|+ +.
T Consensus 111 ~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~------------------------------------~~ 150 (765)
T PRK10049 111 SGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQ------------------------------------TQ 150 (765)
T ss_pred HhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC------------------------------------CH
Confidence 872 23455 888888999999999999999999863 232 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-C
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASS------NMKSKIAFRLS-----SAGKK---DEANEFMDHMEAS-G 473 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g 473 (671)
..+..+..++...|..++|.+.++.... .|+. .....++..+. ..+++ ++|++.++.+.+. .
T Consensus 151 ~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 151 QYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 2344455566677888888887776553 2221 01112222221 22334 7788899888754 2
Q ss_pred CCCCHH-HHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 042546 474 SDVGDK-MWV----SLIKGHCVAGDLDKAADCFQKMVEKEGTS-HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK 547 (671)
Q Consensus 474 ~~~~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 547 (671)
..|+.. .+. ..+.++...|+.++|.+.|+.+.+ .+-. |+.. -..+...|...|++++|...|+++.......
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~-~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~ 305 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA-EGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETI 305 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-cCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC
Confidence 233321 111 113455677999999999999988 5432 4432 2225678999999999999999987532111
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCCHH------HHHHHHHhcCChHHHHHHHHHh
Q 042546 548 P--WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-----------PPFVD------PFIKYVSKSGTSDDAIAFLKGM 608 (671)
Q Consensus 548 p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-----------~p~~~------t~~~~l~~~g~~~~A~~~~~~m 608 (671)
+ ....+..+..++.+.|++++|.++++.+.+... .|+.. .....+...|+.++|++.++++
T Consensus 306 ~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~a 385 (765)
T PRK10049 306 ADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAREL 385 (765)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 134566677788999999999999999986521 23321 1245667899999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh-----------------hccHHHHHHHHhhhc
Q 042546 609 TSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV-----------------RNHADVLNLLYSKKS 661 (671)
Q Consensus 609 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----------------~~~~~~~~l~~~m~~ 661 (671)
....|.+...+..+...+...|++++|++.+++....- +..+++..++..+.+
T Consensus 386 l~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 386 AYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99888889999999999999999999999999865421 245666666666654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.8e-10 Score=125.54 Aligned_cols=226 Identities=9% Similarity=-0.006 Sum_probs=178.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485 (671)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 485 (671)
|+......+...+...|++++|...|+++... +|+...+..+...+.+.|+.++|...+++..+.. ..+...+..+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La 583 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLH 583 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 55444334455556899999999999998654 4556667777888999999999999999998764 22333344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 042546 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQR 564 (671)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g 564 (671)
......|++++|...+++..+ ..|+...+..+..++.+.|+.++|...|.+.... .| +...++.+-..+...|
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCC
Confidence 455567999999999999976 4567888999999999999999999999999863 44 4556677777899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 042546 565 GFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640 (671)
Q Consensus 565 ~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 640 (671)
+.++|++.+++..+. .|+...+ ..++...|++++|+..+++.....+-+..+.........+..+++.|.+-++
T Consensus 658 ~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 658 DIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999864 6665433 5566799999999999999998777676777778888888888888888777
Q ss_pred hc
Q 042546 641 KC 642 (671)
Q Consensus 641 ~m 642 (671)
+-
T Consensus 736 r~ 737 (987)
T PRK09782 736 RR 737 (987)
T ss_pred HH
Confidence 63
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-10 Score=115.49 Aligned_cols=485 Identities=9% Similarity=0.037 Sum_probs=274.6
Q ss_pred CCChHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHH-HcCChh
Q 042546 141 ESSPDEARRFFNWVLE-KESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTE--KFE-KEGLES 216 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~-~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~--~~~-~~g~~~ 216 (671)
.+++..|+.+|..... .+...||+.. .+-..+++.|+.+.|+..|.+..+.. | ...++++. -+. ...+.+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd--p--~~v~alv~L~~~~l~~~d~~ 250 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLD--P--TCVSALVALGEVDLNFNDSD 250 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC--h--hhHHHHHHHHHHHHHccchH
Confidence 5899999999999655 3455566533 23357789999999999999988763 3 22222221 111 111111
Q ss_pred ---HHHH-HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhccc---ccChHHHHHHHHHh--CCChHHHHHH
Q 042546 217 ---DLEK-LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNV---TFSNDLVKFVVDKL--GDEPKKALIF 287 (671)
Q Consensus 217 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~A~~~ 287 (671)
.+.. +...|..-+..+.+....+.-.-.-.+......+......... ..+.+.+ .+.++. .|++++|...
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y-~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFY-QLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHhhccHHHHHHH
Confidence 1111 2223333333333322221111111111111122222222111 0111111 122222 4999999999
Q ss_pred HHHHHHcCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----ChHHHHHHHHH
Q 042546 288 FRWAEESGFVKHD--ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN----MVKEAVDLYEF 361 (671)
Q Consensus 288 f~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----~~~~a~~l~~~ 361 (671)
|.+.... .+| +..+--+...|.+.|+++.+...|+...... +-+..|...+-..|+..+ ..+.|..+..+
T Consensus 330 Y~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 330 YMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 9887642 344 3445567889999999999999999998762 224667777777777665 45666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 042546 362 AMACKNKPSVNCCTFLLRKIVVSKQLD-MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG--- 437 (671)
Q Consensus 362 m~~~g~~p~~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 437 (671)
..+.- ..|...|-.+-..+-...... ........+.+...+..+.+...|.+...+...|++++|...|+.....
T Consensus 406 ~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 406 VLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred HHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 65432 334555555555554443222 4556667777778888888999999999999999999999999987754
Q ss_pred CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 042546 438 GFIASS------NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGT 510 (671)
Q Consensus 438 g~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~g~ 510 (671)
...+|. .+--.+...+-..++.+.|.+.|..+.+. .|.-+. |--+...--..+...+|...++........
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 112332 22223445556677888888888888765 344322 333332222335666777777776652333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHh
Q 042546 511 SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV------------QRGFKDALSLLCLMKD 578 (671)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~ 578 (671)
.|+. ++.+-..+.+...+.-|.+-|..+..+....+|..+.-+|-..|.+ .+..++|+++|.+..+
T Consensus 563 np~a--rsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 563 NPNA--RSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred CcHH--HHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 3333 4444445666666666666555555443333444443333333322 3345566666666654
Q ss_pred CCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 579 HGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 579 ~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
. .|-. .-+..+|+..|++.+|..+|.++.+.......+|..+..+|...|++..|++.|+...
T Consensus 641 ~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~l 707 (1018)
T KOG2002|consen 641 N--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCL 707 (1018)
T ss_pred c--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 2221 1123445666777777777766666433344556666666666777777776666643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-10 Score=123.17 Aligned_cols=320 Identities=11% Similarity=0.039 Sum_probs=215.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
|++++|.++|+.+.+.. +.|...+..++..+.+.++.++|++.++.+... .|+...+-.++..+...++..+|++.
T Consensus 116 gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 116 KRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQA 191 (822)
T ss_pred CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHH
Confidence 78888999999887643 445677778888888889999999999888776 56666664454444445666668888
Q ss_pred HHHHHhCCCCCC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 359 YEFAMACKNKPS-VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437 (671)
Q Consensus 359 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (671)
++++.+. .|+ ...+..+..++ .+.|-...|.++..+-...
T Consensus 192 ~ekll~~--~P~n~e~~~~~~~~l-------------------------------------~~~~~~~~a~~l~~~~p~~ 232 (822)
T PRK14574 192 SSEAVRL--APTSEEVLKNHLEIL-------------------------------------QRNRIVEPALRLAKENPNL 232 (822)
T ss_pred HHHHHHh--CCCCHHHHHHHHHHH-------------------------------------HHcCCcHHHHHHHHhCccc
Confidence 8888864 343 23333333444 4444444444333321100
Q ss_pred CCCCCHHHH------HHHHHH-----HHhcCC---HHHHHHHHHHHHHC-CCCCCH-H----HHHHHHHHHHhcCCHHHH
Q 042546 438 GFIASSNMK------SKIAFR-----LSSAGK---KDEANEFMDHMEAS-GSDVGD-K----MWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 438 g~~~~~~~~------~~li~~-----~~~~g~---~~~A~~~~~~m~~~-g~~~~~-~----~~~~li~~~~~~g~~~~a 497 (671)
+.+...-+ ..++.. -....+ .+.|+.-++.+... +-.|.. . ...-.+-++...|+..++
T Consensus 233 -f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v 311 (822)
T PRK14574 233 -VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL 311 (822)
T ss_pred -cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 00000000 000000 001112 34555555555431 112322 2 222345678899999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD----LKPWHTTYEELIKNLLVQRGFKDALSLL 573 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~l~ 573 (671)
.+.|+.+.. .+.+....+--++.++|...++.++|..+|.++....+ ..++......|.-+|...+++++|..++
T Consensus 312 i~~y~~l~~-~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 312 IKEYEAMEA-EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred HHHHHHhhh-cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999998 78765556888999999999999999999999865322 2334444678999999999999999999
Q ss_pred HHHHhCCC-----------CCC--HHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 042546 574 CLMKDHGF-----------PPF--VDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 574 ~~m~~~~~-----------~p~--~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 636 (671)
+.+.+... .|+ .... +..+.-.|++.+|++.++++....|-|......+.+.+...|.+.+|+
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~ 470 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAE 470 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 99987311 122 2222 455678999999999999999988889999999999999999999999
Q ss_pred HHHHhch
Q 042546 637 DLLSKCP 643 (671)
Q Consensus 637 ~~~~~m~ 643 (671)
+.++...
T Consensus 471 ~~~k~a~ 477 (822)
T PRK14574 471 QELKAVE 477 (822)
T ss_pred HHHHHHh
Confidence 9997643
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.6e-11 Score=121.30 Aligned_cols=243 Identities=14% Similarity=0.143 Sum_probs=165.1
Q ss_pred CCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHH
Q 042546 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKV 237 (671)
Q Consensus 158 ~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 237 (671)
.|+.||-+||..+|.-||..|+.+.|- +|.-|.-.....+...|+.++.+....++.+.+
T Consensus 19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enp------------------- 78 (1088)
T KOG4318|consen 19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENP------------------- 78 (1088)
T ss_pred hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCC-------------------
Confidence 778888899999999999999888888 888888777777888888888887776543321
Q ss_pred HHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCCh
Q 042546 238 ASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI 317 (671)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 317 (671)
-.|...+|+.|..+|.+.|++
T Consensus 79 -----------------------------------------------------------kep~aDtyt~Ll~ayr~hGDl 99 (1088)
T KOG4318|consen 79 -----------------------------------------------------------KEPLADTYTNLLKAYRIHGDL 99 (1088)
T ss_pred -----------------------------------------------------------CCCchhHHHHHHHHHHhccch
Confidence 167788899999999998886
Q ss_pred HH---HHHHHHHHH----HcCC-----------------CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC-CCCCCHH
Q 042546 318 DR---FWKVLDEMR----SKGY-----------------EMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC-KNKPSVN 372 (671)
Q Consensus 318 ~~---A~~~~~~m~----~~g~-----------------~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~-g~~p~~~ 372 (671)
.. ..+.+.... ..|+ -||.. .++......|-++.++++...+... -..|..+
T Consensus 100 i~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~~p~~v 176 (1088)
T KOG4318|consen 100 ILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV 176 (1088)
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH
Confidence 54 222111111 1121 12221 2233333445555555555544311 1112111
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR 452 (671)
Q Consensus 373 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 452 (671)
.++- ...+..-.+++......-.-.|+..+|.+++++-...|+++.|..++.+|.+.|++.+.+-|-.|+-+
T Consensus 177 ----fLrq----nv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 177 ----FLRQ----NVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred ----HHHH----hccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 1222 11222223344443333222689999999999999999999999999999999999888877777766
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042546 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493 (671)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (671)
.++..-+..+..-|.+.|+.|+..|+..-+-.+..+|.
T Consensus 249 ---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 249 ---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 88888999999999999999999999877777766544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-13 Score=93.83 Aligned_cols=50 Identities=26% Similarity=0.217 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 042546 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEK 211 (671)
Q Consensus 162 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 211 (671)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999975
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.8e-10 Score=114.15 Aligned_cols=280 Identities=9% Similarity=0.012 Sum_probs=203.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHH
Q 042546 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393 (671)
Q Consensus 314 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (671)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|.+.+.++.+. .|+...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~------------------- 154 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLP------------------- 154 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHH-------------------
Confidence 588888888887765542111 223333344447888999999999888752 2322111
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
..-.....+...|+++.|...++++.+.. +-+......+...|.+.|++++|.+++..+.+.+
T Consensus 155 ----------------~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 155 ----------------VEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred ----------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 01122456788899999999999998776 5567788889999999999999999999999877
Q ss_pred CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 042546 474 SDVGD-------KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546 (671)
Q Consensus 474 ~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 546 (671)
..++. .+|..++.......+.+...++++...+ ..+.+......+...+...|+.++|.+++.+..++
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--- 292 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--- 292 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence 54322 2344445544555666777777777654 23457778888999999999999999999988763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHH
Q 042546 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCL 622 (671)
Q Consensus 547 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l 622 (671)
.||.. -.++.+....++.+++++..+...+. .|+...+ ...+.+.|++++|.+.|+...+.. |+...|..+
T Consensus 293 ~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~-P~~~~~~~L 367 (398)
T PRK10747 293 QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR-PDAYDYAWL 367 (398)
T ss_pred CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHH
Confidence 44442 12334444569999999999988864 5665433 566678999999999999988754 788888899
Q ss_pred HHHHHHcCCHHHHHHHHHhc
Q 042546 623 FAAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 623 ~~~~~~~g~~~~A~~~~~~m 642 (671)
..++.+.|+.++|.+++++-
T Consensus 368 a~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999874
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-08 Score=103.70 Aligned_cols=77 Identities=9% Similarity=0.097 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCChhHHHH
Q 042546 143 SPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYG--VASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 143 ~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~--p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.+..+..++...-...+ .|++.-|.|-..|.-.|++..++.+...+...-.. .-...|-.+-++|-..|+++.|..
T Consensus 251 s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 34455555555544333 33445555666666666666666666666544210 012234455556666666666654
Q ss_pred H
Q 042546 221 L 221 (671)
Q Consensus 221 ~ 221 (671)
.
T Consensus 329 y 329 (1018)
T KOG2002|consen 329 Y 329 (1018)
T ss_pred H
Confidence 3
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.41 E-value=6e-13 Score=91.33 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042546 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348 (671)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 348 (671)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67888888888888888888888888888888888888888888887764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-12 Score=124.69 Aligned_cols=224 Identities=16% Similarity=0.117 Sum_probs=93.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
.+...+-..++.++|.+.++++...+. -+...+..++.. ...+++++|.++++..-+. .++...+..++..+.+.+
T Consensus 49 ~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 49 LLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred ccccccccccccccccccccccccccc-cccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHh
Confidence 333444556777777777777776542 245556666665 5777788888777766544 345566677777778888
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRGFKDALS 571 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 571 (671)
+++++.++++..........+...|..+...+.+.|+.++|.+.+++..+. .| |....+.++..+...|+.+++.+
T Consensus 125 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 125 DYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp -HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 888888888877653344566777777777788888888888888887763 34 35567777777778888888777
Q ss_pred HHHHHHhCC-CCCCH-HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 572 LLCLMKDHG-FPPFV-DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 572 l~~~m~~~~-~~p~~-~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
+++...+.. -.|.. ..+..++...|+.++|..++++..+..+.|......+.+++.+.|+.++|.++.++..
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 777766542 12222 3456666777888888888888777676788888888888888888888888877654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-09 Score=111.92 Aligned_cols=500 Identities=13% Similarity=0.100 Sum_probs=249.0
Q ss_pred ccccCCchhHHHHHhhhcCCchh-----HHHHHHhcCCCCCHHHHHHHHHhc--CCChHHHHHHHHHHhhcCCCCCCHHH
Q 042546 94 MEQKESDFTVVSDIFYKFSDVND-----ISKQLELSGVVFTHEMVLKVLKNL--ESSPDEARRFFNWVLEKESERLSSKT 166 (671)
Q Consensus 94 ~~~~~p~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~A~~~f~~m~~~~~~~~~~~~ 166 (671)
..|+.|+.+||.+++...+..++ +..-|+..+..+..+.+..+..+- .++.+.|. .|...+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccccccccCCC------------CCchhH
Confidence 45889999999999988665444 334455555555555554444331 23333332 277778
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Q 042546 167 YNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVR 246 (671)
Q Consensus 167 ~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (671)
|+.+..+|.++|++.. |+...+ -...++..+...|--.....+...+.-. +...+.....+...+.
T Consensus 86 yt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~--p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCC--PHSLPDAENAILLLVL 151 (1088)
T ss_pred HHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccC--cccchhHHHHHHHHHH
Confidence 8888888888888765 222221 1112222222222222222111111111 1111111111211221
Q ss_pred cCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 042546 247 SDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE 326 (671)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (671)
.+-|.. ....+.+.+..-.+.-+..+++.+.-...-..++.+....-.+ .|+..+|.+++..-.-+|+.+.|..++.+
T Consensus 152 eglwaq-llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 152 EGLWAQ-LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHH-HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 111111 1111112222111111111344443333344444444443233 69999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCC
Q 042546 327 MRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL 406 (671)
Q Consensus 327 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (671)
|+++|++.+..-|-.|+-+ .++...+..+..-|.+.|+.|+..|+...+-.+.+.+... ..+.|...
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~----------~~~e~sq~ 296 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK----------YGEEGSQL 296 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh----------hcccccch
Confidence 9999999988877777766 8889999999999999999999999988777766644211 01122221
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH------------HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 042546 407 TDAMLNSVLKALISVGRMGECNKIL------------KAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS-- 472 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~------------~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 472 (671)
+ ..+++-+..-+-.| ..|.+.+ .+..-.|+.....+|...+... ..|.-++..++-..|..-
T Consensus 297 ~-hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~ 372 (1088)
T KOG4318|consen 297 A-HGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTL 372 (1088)
T ss_pred h-hhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCcc
Confidence 1 11222222222222 1111111 1111123333334444333322 245555555554444311
Q ss_pred CCCC-CHHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHHHcCC---------------CCC--
Q 042546 473 GSDV-GDKMWVSLIKGHCVA----------------------GDLDKAADCFQKMVEKEG---------------TSH-- 512 (671)
Q Consensus 473 g~~~-~~~~~~~li~~~~~~----------------------g~~~~a~~~~~~m~~~~g---------------~~p-- 512 (671)
...+ ++-.|..++.-|.+. .+..+..++.....+..+ ..|
T Consensus 373 r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~ 452 (1088)
T KOG4318|consen 373 RDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWP 452 (1088)
T ss_pred ccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccch
Confidence 0111 122233333322221 112222222221111000 000
Q ss_pred -----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----C
Q 042546 513 -----AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-----P 582 (671)
Q Consensus 513 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-----~ 582 (671)
-...-+.++..++..-+..++...-+..... .-| ..|..||+-+..+...+.|..+..+...... .
T Consensus 453 ~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~--lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~ 528 (1088)
T KOG4318|consen 453 LIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL--LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDL 528 (1088)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhccc
Confidence 0111234444445444444444333333221 111 4677788888888888888887777653221 1
Q ss_pred CCHHHHHHHHHhcCChHHHHHHHHHhhhC--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 042546 583 PFVDPFIKYVSKSGTSDDAIAFLKGMTSK--RFPS-MSVVLCLFAAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 583 p~~~t~~~~l~~~g~~~~A~~~~~~m~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m 642 (671)
|....+.+.+.+.+...++..+++++.+. +.|+ ..+.-.+++..+..|..+...++++-.
T Consensus 529 ~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 529 PLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADIL 591 (1088)
T ss_pred HhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence 22233456667778888888888777763 2232 334445566666677777666666543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.1e-09 Score=111.12 Aligned_cols=284 Identities=13% Similarity=0.008 Sum_probs=197.7
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHH
Q 042546 312 GREDCIDRFWKVLDEMRSKGYEMEM-ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390 (671)
Q Consensus 312 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 390 (671)
...|+++.|.+.+....+. .|+. ..+-....+..+.|+.+.|.+.+.+..+.. |+..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~------------------ 152 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDN------------------ 152 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCc------------------
Confidence 3568899999988877665 3543 333444566778899999999988876421 2210
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
....-.....+...|+++.|...++.+.+.. +-+...+..+...|.+.|++++|.+++..+.
T Consensus 153 -----------------l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 153 -----------------ILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred -----------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0112223556678899999999999999876 4567788899999999999999999999999
Q ss_pred HCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHHHHcCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 471 ASGSDVGDKMWV-SLIKGH---CVAGDLDKAADCFQKMVEKEG---TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 471 ~~g~~~~~~~~~-~li~~~---~~~g~~~~a~~~~~~m~~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
+.+.. +...+. .-..++ ...+..+++.+.+..+.+ .. .+.+...+..+...+...|+.++|.+++++..++
T Consensus 215 k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~-~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 215 KAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK-NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 88754 333332 111221 222333333445555544 21 1237788889999999999999999999999874
Q ss_pred CCCCCCHHHH-HHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHH--HH----HHHHHhcCChHHHHHHHHHhhh-CCC
Q 042546 544 YDLKPWHTTY-EELIKN--LLVQRGFKDALSLLCLMKDHGFPPFVD--PF----IKYVSKSGTSDDAIAFLKGMTS-KRF 613 (671)
Q Consensus 544 ~~~~p~~~~~-~~li~~--~~~~g~~~~A~~l~~~m~~~~~~p~~~--t~----~~~l~~~g~~~~A~~~~~~m~~-~~~ 613 (671)
.||.... ..++.. ....++.+.+++.+++..+. .|+.. .+ ...+.+.|++++|.++|+.... ...
T Consensus 293 ---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~ 367 (409)
T TIGR00540 293 ---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ 367 (409)
T ss_pred ---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC
Confidence 3443311 012222 33467888899999887754 56665 44 5556789999999999996433 234
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 042546 614 PSMSVVLCLFAAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 614 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 642 (671)
|+...+..+...+.+.|+.++|.+++++-
T Consensus 368 p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 368 LDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888999999999999999999999873
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-07 Score=98.40 Aligned_cols=468 Identities=12% Similarity=0.057 Sum_probs=295.9
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|+.++|.+++.++.++.+ .+...|-+|-..|-+.|+.+++...+--.-.. .+-|..-|..+-....+.|.++.|.-
T Consensus 152 rg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHH
Confidence 5999999999999988555 67789999999999999999988765444333 23366788888888888888877764
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
...-.-++.+.+. .. -..-...+-+. |+...|..-|.++-.-.+ +.|
T Consensus 229 cy~rAI~~~p~n~-~~-----------------------------~~ers~L~~~~--G~~~~Am~~f~~l~~~~p-~~d 275 (895)
T KOG2076|consen 229 CYSRAIQANPSNW-EL-----------------------------IYERSSLYQKT--GDLKRAMETFLQLLQLDP-PVD 275 (895)
T ss_pred HHHHHHhcCCcch-HH-----------------------------HHHHHHHHHHh--ChHHHHHHHHHHHHhhCC-chh
Confidence 3322212111111 00 00001111111 788888888888764221 112
Q ss_pred H----HHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH-
Q 042546 301 E----SSYNAMASVLGREDCIDRFWKVLDEMRSKG-YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC- 374 (671)
Q Consensus 301 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~- 374 (671)
. ..--.++..|...++-+.|.+.++.....+ -..+...++.++..+.+...++.|......+......+|..-+
T Consensus 276 ~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 276 IERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence 2 222234556667777788888888776632 2335567778888888888888888888877763333332222
Q ss_pred ---------------------HHHH--HHHHhcCcccHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 375 ---------------------TFLL--RKIVVSKQLDMRLFSKVVRVFRENGNV--LTDAMLNSVLKALISVGRMGECNK 429 (671)
Q Consensus 375 ---------------------~~ll--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 429 (671)
..=+ .+.|..+..+.+..+.+.......... -+...|.-+..+|...|++.+|..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~ 435 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALR 435 (895)
T ss_pred hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 1000 111222222344555666666666633 345578999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 042546 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD-KMWVSLIKGHCVAGDLDKAADCFQKMVE-- 506 (671)
Q Consensus 430 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~-- 506 (671)
+|..+.....--+...|--+..+|-..|..++|.+.|+..... .|+. -.-.+|-..+-+.|+.++|.+.++.+..
T Consensus 436 ~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 436 LLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 9999998765667889999999999999999999999999876 4543 3455566778899999999999998542
Q ss_pred -----cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCC-----------------CHHHHHHHHHHH
Q 042546 507 -----KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE----YDLKP-----------------WHTTYEELIKNL 560 (671)
Q Consensus 507 -----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p-----------------~~~~~~~li~~~ 560 (671)
..+..|+...-....+.|...|+.++=..+-..|... .-+-| ...+-..++.+-
T Consensus 514 ~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~ 593 (895)
T KOG2076|consen 514 GRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAR 593 (895)
T ss_pred ccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHH
Confidence 1345566666666777888889888755444444322 11111 111222233333
Q ss_pred HhcCCHHHHHHH------HHHHHhCCCCCCHH-----HHHHHHHhcCChHHHHHHHHHhhhCC--C-CCH---HHHHHHH
Q 042546 561 LVQRGFKDALSL------LCLMKDHGFPPFVD-----PFIKYVSKSGTSDDAIAFLKGMTSKR--F-PSM---SVVLCLF 623 (671)
Q Consensus 561 ~~~g~~~~A~~l------~~~m~~~~~~p~~~-----t~~~~l~~~g~~~~A~~~~~~m~~~~--~-p~~---~~~~~l~ 623 (671)
.+.++.....+- +.--..+|+.-+.. -++..+++.+++++|..+...+..-. . ++. ..-...+
T Consensus 594 ~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l 673 (895)
T KOG2076|consen 594 EKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGL 673 (895)
T ss_pred hccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHH
Confidence 333322111111 11111112222211 12566789999999999988877632 1 222 2345567
Q ss_pred HHHHHcCCHHHHHHHHHhchHhh
Q 042546 624 AAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
.+....+++.+|...++.|....
T Consensus 674 ~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 674 KASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHH
Confidence 77888999999999999987653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.4e-09 Score=107.00 Aligned_cols=254 Identities=8% Similarity=0.008 Sum_probs=116.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHH--HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYN--AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 356 (671)
|+++.|.+.|.++.+. .|+...+- .....+...|+++.|...++++.+.. +-+......+...|.+.|++++|.
T Consensus 132 g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 132 GDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred CCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 4555555555555431 33332221 22445556666666666666666553 224555566666666666666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
+++..+.+.+..++.. ...+-. .+|..++.......+.+...++++.+.+
T Consensus 208 ~~l~~l~k~~~~~~~~-~~~l~~-----------------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~ 257 (398)
T PRK10747 208 DILPSMAKAHVGDEEH-RAMLEQ-----------------------------QAWIGLMDQAMADQGSEGLKRWWKNQSR 257 (398)
T ss_pred HHHHHHHHcCCCCHHH-HHHHHH-----------------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence 6666666554432211 100000 0011111111222223333333333322
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~ 516 (671)
. .+.+......+...+...|+.++|.+++++..+. .||... .++.+....++.+++.+..+...+ ..+-|...
T Consensus 258 ~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l 330 (398)
T PRK10747 258 K-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLL 330 (398)
T ss_pred H-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHH
Confidence 1 1234444555555555555555555555555442 233211 112222333555555555555544 11123333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
..++-..|.+.|++++|.+.|+...+ ..|+...|..+...+.+.|+.++|.+++++-
T Consensus 331 ~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 331 WSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44555555555555555555555543 3455555555555555555555555555544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-08 Score=104.78 Aligned_cols=294 Identities=12% Similarity=0.025 Sum_probs=187.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHH
Q 042546 269 LVKFVVDKLGDEPKKALIFFRWAEESGFVKHD-ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM--ETCVKVLGR 345 (671)
Q Consensus 269 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li~~ 345 (671)
+....+....|+++.|.+.+....+. .|+ ...+-.....+.+.|+.+.|.+.+.+..+.. |+. ...-.....
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l 162 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHH
Confidence 34444445569999999999887652 454 3444455677888899999999999987653 443 344445778
Q ss_pred HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 346 FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425 (671)
Q Consensus 346 ~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (671)
+...|+++.|.+.++.+.+.. |+ +..+...+...|.+.|+++
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~--P~------------------------------------~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA--PR------------------------------------HKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC------------------------------------CHHHHHHHHHHHHHHhhHH
Confidence 888999999999999998642 22 2334566777778888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HhcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 426 ECNKILKAMEEGGFIASSNMKS-KIAFRL---SSAGKKDEANEFMDHMEASGS---DVGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~g~~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
+|.+++..+.+.+.. +...+. .-..++ ...+..+++.+.+..+.+... +.+...+..+...+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~ 283 (409)
T TIGR00540 205 ALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQ 283 (409)
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHH
Confidence 888888888877643 333231 111111 222333333344444443321 126677777888888888888888
Q ss_pred HHHHHHHHcCCCCCCHHHH-HHHHHH--HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 499 DCFQKMVEKEGTSHAGYAI-DLLVNT--YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575 (671)
Q Consensus 499 ~~~~~m~~~~g~~p~~~~~-~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 575 (671)
+++++..+ . .||.... ..++.. ....++.+.+.+.++...+...-.|+.....++-..+.+.|++++|.+.|+.
T Consensus 284 ~~l~~~l~-~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 284 EIIFDGLK-K--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHh-h--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 88888876 2 2333210 012222 2335677777777777765422222213445677777888888888888885
Q ss_pred HHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhh
Q 042546 576 MKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMT 609 (671)
Q Consensus 576 m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~ 609 (671)
.......|+...+ ..++.+.|+.++|.+++++..
T Consensus 361 a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 361 VAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333346666543 455667888888888887653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6e-08 Score=94.65 Aligned_cols=230 Identities=13% Similarity=0.103 Sum_probs=177.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
.-.|+.-.|..-|+..+.....++ ..|--+..+|....+.++.++.|++....+. -|..+|.---..+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHH
Confidence 457888899999999887653333 3377788889999999999999999987652 34555655556666778899999
Q ss_pred HHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 499 DCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 499 ~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
.=|++... +.|+ ...|--+--+.-+.+++++++..|++..++ ++--...|+.....+...+++++|.+.|+...
T Consensus 415 aDF~Kai~---L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 415 ADFQKAIS---LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHhh---cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99998866 4443 445555555666889999999999999986 44556788888899999999999999999887
Q ss_pred hCCCCCC-------HHHHH----HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh
Q 042546 578 DHGFPPF-------VDPFI----KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 578 ~~~~~p~-------~~t~~----~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
+ +.|+ ..+++ -.+-=.+++..|..++.+.++.++.....|.+|...-.+.|+.++|+++|++-...-
T Consensus 490 ~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 490 E--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred h--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5 3444 22331 112234899999999999999888888999999999999999999999999976655
Q ss_pred hccHHHHHHHH
Q 042546 647 RNHADVLNLLY 657 (671)
Q Consensus 647 ~~~~~~~~l~~ 657 (671)
+...+..+.|.
T Consensus 568 rt~~E~~~a~s 578 (606)
T KOG0547|consen 568 RTESEMVHAYS 578 (606)
T ss_pred HhHHHHHHHHH
Confidence 55555444443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-07 Score=99.64 Aligned_cols=362 Identities=12% Similarity=0.070 Sum_probs=218.5
Q ss_pred HHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChh
Q 042546 173 IVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGD 252 (671)
Q Consensus 173 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (671)
.+++ |+.++|.+++.+..+.. +-+...|-+|-..|-..|+..
T Consensus 149 lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~e------------------------------------ 190 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIE------------------------------------ 190 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHH------------------------------------
Confidence 3444 99999999999998874 346777888888887776444
Q ss_pred HHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 042546 253 DVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332 (671)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 332 (671)
++...+-..-. --+.|..-|-.+-....+.|++++|.-+|.+..+..
T Consensus 191 ------------------------------K~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~- 237 (895)
T KOG2076|consen 191 ------------------------------KALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN- 237 (895)
T ss_pred ------------------------------HHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-
Confidence 44433333321 225666778888888888888888888888887763
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHH
Q 042546 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412 (671)
Q Consensus 333 ~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (671)
+++...+--=...|-+.|+...|..-|.++.......|..-+-.++..
T Consensus 238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~-------------------------------- 285 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR-------------------------------- 285 (895)
T ss_pred CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH--------------------------------
Confidence 334444445566677888888888888888754221121111111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------
Q 042546 413 SVLKALISVGRMGECNKILKAMEEG-GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS------------------- 472 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------- 472 (671)
++..+...++-+.|.+.++..... +-..+...++.++..|.+...++.|......+...
T Consensus 286 -~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 286 -VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred -HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 222233333334444444433321 11222333444444444444444444444444331
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 473 --------GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG--TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 473 --------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+..++...+ -+.-++.+....+....+.....+ .. ..-+...|.-+.++|...|++.+|.++|..+..
T Consensus 365 ~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred cccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 112222221 122233444444444445555554 44 334556677888888888889999888888876
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhhCC------
Q 042546 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKR------ 612 (671)
Q Consensus 543 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~------ 612 (671)
. ...-+...|--+..+|-..|..++|++.|+..... .|+. .++...+-+.|+.++|.+.++.|..-+
T Consensus 443 ~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 443 R-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred C-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 4 23334667888888888888888898888888753 5554 456777788888888888888865321
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 613 ---FPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 613 ---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
.|+...-....+.|.+.|+.++=...-.+|.
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2444555566778888888887555544443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.9e-11 Score=118.71 Aligned_cols=252 Identities=16% Similarity=0.088 Sum_probs=86.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
|++++|+++++......-.+.|...|..+....-..++.++|.+.++++...+.. +...+..++.. ...+++++|.++
T Consensus 22 ~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~ 99 (280)
T PF13429_consen 22 GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKL 99 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccc
Confidence 6666666666432211101223344444444555566666666666666654322 34445555554 466666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
+....+.. ++...+..++..+.+.++++++.++++......
T Consensus 100 ~~~~~~~~---------------------------------------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~ 140 (280)
T PF13429_consen 100 AEKAYERD---------------------------------------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELP 140 (280)
T ss_dssp ---------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T
T ss_pred cccccccc---------------------------------------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 55443211 122234555666667777777777777765422
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 042546 439 -FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV-GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516 (671)
Q Consensus 439 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~ 516 (671)
.+.+...|..+...+.+.|+.++|.+.+++..+. .| |....+.++..+...|+.+++.++++...+ .. ..|...
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~-~~-~~~~~~ 216 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLK-AA-PDDPDL 216 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH-H--HTSCCH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH-HC-cCHHHH
Confidence 3455666777777777777777777777777665 34 355666777777777777777777776665 22 334445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
+..+..+|...|+.++|...|++.... .+.|......+.+++.+.|+.++|.++.++..
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHhccccccccccccccccccc--cccccccccccccccccccccccccccccccc
Confidence 666777777777777777777776653 23355556666677777777777777766543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.4e-08 Score=90.67 Aligned_cols=290 Identities=14% Similarity=0.165 Sum_probs=207.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHH
Q 042546 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393 (671)
Q Consensus 314 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (671)
+++.++|.++|-+|.+.. +-+..+--+|-+.|-+.|.+|.|++++..+.++ ||... .-
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~-~q----------------- 105 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTF-EQ----------------- 105 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCch-HH-----------------
Confidence 467899999999999852 112334456888899999999999999998864 43221 10
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
+. ...-.|-.-|...|-+|.|+.+|..+.+.+ .--......|+..|-+..++++|.++-+++.+.+
T Consensus 106 r~-------------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 106 RL-------------LALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HH-------------HHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 00 113345666888999999999999998755 3345567789999999999999999999998776
Q ss_pred CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q 042546 474 SDVGD----KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY-AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548 (671)
Q Consensus 474 ~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 548 (671)
-++.. ..|.-+-..+....+++.|..++.+..+ . .|+.+ .--.+-+.+...|+++.|.+.++.+.++ +..-
T Consensus 172 ~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq-a--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~y 247 (389)
T COG2956 172 GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ-A--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEY 247 (389)
T ss_pred CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh-h--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHH
Confidence 55543 2355566666677899999999999876 2 33332 2233446788899999999999999875 3333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 042546 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV-SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFF 627 (671)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l-~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~ 627 (671)
-..+...|..+|.+.|+.++...++.++.+....++..-.+.-+ ....-.+.|..++.+-.++ .|+...+..+++.-.
T Consensus 248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r-~Pt~~gf~rl~~~~l 326 (389)
T COG2956 248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR-KPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh-CCcHHHHHHHHHhhh
Confidence 34577888899999999999999999998876666655443333 3334455566655544433 288888888888664
Q ss_pred H---cCCHHHHHHHHHhchH
Q 042546 628 Q---ARRHSEAQDLLSKCPR 644 (671)
Q Consensus 628 ~---~g~~~~A~~~~~~m~~ 644 (671)
. .|++.+....++.|..
T Consensus 327 ~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 327 ADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccccccchhhhHHHHHHHHH
Confidence 4 4567777777777764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.5e-07 Score=88.90 Aligned_cols=258 Identities=10% Similarity=-0.015 Sum_probs=185.5
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC-C-CCHHHHHHHHHHHHhcCc
Q 042546 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN-K-PSVNCCTFLLRKIVVSKQ 386 (671)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~-p~~~~~~~ll~~~~~~~~ 386 (671)
.++-...+.+++.+-.+.....|+..+...-+....+.-...++++|+.+|+++.+... . -|..+|+-++-.-....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s- 313 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS- 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH-
Confidence 34444456666666666666666654444444444444556677777777777775521 1 14456655543322211
Q ss_pred ccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 387 LDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFM 466 (671)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 466 (671)
....... ....-.... +.|+..+.+-|+-.++.++|...|++..+.+ +.....|+.|-+-|....+...|.+-+
T Consensus 314 -kLs~LA~--~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 314 -KLSYLAQ--NVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred -HHHHHHH--HHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1110000 001112222 3567788888899999999999999999876 556788999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 042546 467 DHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546 (671)
Q Consensus 467 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 546 (671)
+...+-. +.|-..|-.|.++|.-.+...-|+-.|++..+ -.+-|...|.+|-++|.+.++.++|.+.|.....- -
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~ 462 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--G 462 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--c
Confidence 9998765 56888999999999999999999999999876 23347889999999999999999999999998763 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 547 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
..+...+..|.+.|-+.++.++|.+.|++-.+
T Consensus 463 dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33567889999999999999999998887654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-08 Score=90.49 Aligned_cols=233 Identities=12% Similarity=0.131 Sum_probs=165.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 306 AMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385 (671)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 385 (671)
.|-.-|...|-+|.|+++|..+.+.|. --....-.|+..|-+..+|++|+++-+++.+.+-.+..+ -|.
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~----eIA------ 180 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV----EIA------ 180 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh----HHH------
Confidence 344557778889999999998887542 235567788999999999999999999888765444322 111
Q ss_pred cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465 (671)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 465 (671)
..|.-+...+....+++.|..++.+..+.+ +..+..--.+-+.+...|+++.|.+.
T Consensus 181 -----------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~ 236 (389)
T COG2956 181 -----------------------QFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEA 236 (389)
T ss_pred -----------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHH
Confidence 125666666777788999999999888765 23334444566778889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 042546 466 MDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545 (671)
Q Consensus 466 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (671)
++...+.+..--..+...|..+|.+.|+.++....+..+.+ ....++. -..+-+.-....-.+.|...+.+-..+
T Consensus 237 ~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r-- 311 (389)
T COG2956 237 LERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-TNTGADA--ELMLADLIELQEGIDAAQAYLTRQLRR-- 311 (389)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-ccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--
Confidence 99998875444456678899999999999999999999887 4433333 344444434455566666666555443
Q ss_pred CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 042546 546 LKPWHTTYEELIKNLLV---QRGFKDALSLLCLMKDH 579 (671)
Q Consensus 546 ~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~ 579 (671)
+|+...+..+|+.-.. .|...+-+.+++.|...
T Consensus 312 -~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 312 -KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 6999999999986543 45566677777777644
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-08 Score=97.94 Aligned_cols=206 Identities=12% Similarity=0.050 Sum_probs=147.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
...|++++|.+.+++.....-.-....||.= -.+-..|++++|++.|-++... ..-+......+...|-...+..+|.
T Consensus 501 f~ngd~dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 3468888888888888754322222333322 2356788889998888776432 1234555666777788888888888
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 499 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
+++-+... -++.|..+.+-|.+.|-+.|+-..|.+.+-+--+ -++-+..+..-|..-|....-+++|+..|++..
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa- 653 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA- 653 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-
Confidence 88876643 3555677788888888888988888887665443 245567777777777777888888998888765
Q ss_pred CCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 042546 579 HGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRH 632 (671)
Q Consensus 579 ~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~ 632 (671)
-+.|+..-| .+.+.+.|++..|..+++.+.++.+.|.....-|+..+...|..
T Consensus 654 -liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 654 -LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred -hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 367887655 45556889999999999988888888888888888887777743
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-08 Score=92.73 Aligned_cols=283 Identities=11% Similarity=0.020 Sum_probs=213.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHH
Q 042546 314 EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFS 393 (671)
Q Consensus 314 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (671)
.|++..|+++..+-.+.+-. ....|..-..+--+.|+.+.+-....+.-+.
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---------------------------- 147 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---------------------------- 147 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhcc----------------------------
Confidence 47888888888776666533 3445555566666777888887777776542
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
.-.++....-+........|+.+.|..-.+++.+.+ +.+.........+|.+.|++.....+...|.+.|
T Consensus 148 ---------~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 148 ---------AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred ---------CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 112233345556666788899999999888888776 5677888999999999999999999999999988
Q ss_pred CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 042546 474 SDVGD-------KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL 546 (671)
Q Consensus 474 ~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 546 (671)
.--|. .+|+.+++-....+..+.-...|+.... ..+-+...-.+++.-+.++|+.++|.++..+..++ +.
T Consensus 218 ~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~ 294 (400)
T COG3071 218 LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QW 294 (400)
T ss_pred CCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-cc
Confidence 75554 5788888888888888887788888765 34556666778888899999999999999998875 56
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HhCCCCCCHH-HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 042546 547 KPWHTTYEELIKNLLVQRGFKDALSLLCLM-KDHGFPPFVD-PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFA 624 (671)
Q Consensus 547 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m-~~~~~~p~~~-t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~ 624 (671)
.|+.. ..-.+.+.++.+.-++..++- ...+-.|+.. |+-..|.+.+.+.+|..+|+...+. .|+..+|..+.+
T Consensus 295 D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-~~s~~~~~~la~ 369 (400)
T COG3071 295 DPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL-RPSASDYAELAD 369 (400)
T ss_pred ChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCChhhHHHHHH
Confidence 56522 223456677777777666644 4556666543 4456667999999999999976653 389999999999
Q ss_pred HHHHcCCHHHHHHHHHhch
Q 042546 625 AFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~ 643 (671)
+|.+.|+.++|.+.+++-.
T Consensus 370 ~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 370 ALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHcCChHHHHHHHHHHH
Confidence 9999999999999988743
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-06 Score=82.84 Aligned_cols=429 Identities=13% Similarity=0.051 Sum_probs=302.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.+++..|+.+|+....-. ..++..|-.-+..=.++..+..|..++++....=...|..-|--+. .
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y-m------------ 150 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY-M------------ 150 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH-H------------
Confidence 467888999999987622 3677888888888889999999999988876542222222221110 0
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
...-|++..|.++|++-.+ ..|+
T Consensus 151 ------------------------------------------------------EE~LgNi~gaRqiferW~~---w~P~ 173 (677)
T KOG1915|consen 151 ------------------------------------------------------EEMLGNIAGARQIFERWME---WEPD 173 (677)
T ss_pred ------------------------------------------------------HHHhcccHHHHHHHHHHHc---CCCc
Confidence 0001888999999987653 3999
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 380 (671)
...|++.|..=.+-+.++.|..+++...-. .|++.+|---..-=-+.|.+..|..+|+...+. .-|...-..+..+
T Consensus 174 eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfva 249 (677)
T KOG1915|consen 174 EQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVA 249 (677)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHH
Confidence 999999999999999999999999998864 599999998888888999999999999988743 2233333445555
Q ss_pred HHhcCc--ccHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHH--------HHHHHHHCCCCCCHHHHHH
Q 042546 381 IVVSKQ--LDMRLFSKVVRVFRENGNVLT--DAMLNSVLKALISVGRMGECNK--------ILKAMEEGGFIASSNMKSK 448 (671)
Q Consensus 381 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~--------~~~~m~~~g~~~~~~~~~~ 448 (671)
+++-.. .+.+.+.-+++-..+. ++.+ ...|......=-+-|+.....+ -++.+.+.+ +-|-.+|--
T Consensus 250 FA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfd 327 (677)
T KOG1915|consen 250 FAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHH
Confidence 554321 1233444444444332 2222 2345555544455566443333 244455444 567788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH-----HH---HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 042546 449 IAFRLSSAGKKDEANEFMDHMEASGSDVGD--KMWVSLI-----KG---HCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518 (671)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li-----~~---~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 518 (671)
.+..-...|+.+...++|++.... ++|-. ..|.-.| -+ =....+++.+.++++...+ -++....||.
T Consensus 328 ylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFa 404 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFA 404 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHH
Confidence 888888999999999999999865 34421 1122211 11 1356899999999999886 3555667777
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--
Q 042546 519 LLVNTYC----SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV-- 592 (671)
Q Consensus 519 ~li~~~~----~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l-- 592 (671)
-+--+|+ ++.++..|.+++.... |.-|...+|...|..-.+.+.+|....++++..+- .|..-.--..|
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAE 479 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHH
Confidence 7666665 5789999999999886 67899999999999889999999999999999874 55543322233
Q ss_pred --HhcCChHHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHH
Q 042546 593 --SKSGTSDDAIAFLKGMTSKRF--PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLL 656 (671)
Q Consensus 593 --~~~g~~~~A~~~~~~m~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~ 656 (671)
...|+.+.|..+|+-..+... .....|-+.|+-=...|.++.|..++++..++....+ ++--|
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisF 546 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISF 546 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhH
Confidence 468999999999998887432 2345688888888899999999999999887654444 43333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-06 Score=84.76 Aligned_cols=317 Identities=11% Similarity=0.030 Sum_probs=173.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
+..+-|..+|....+ -++.+...|......=-..|..++...+|++.... ++-....|-....-+-..|++..|+.+
T Consensus 530 ~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 530 PAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred chHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 556666666666553 23555666766666666667777777777776654 233455555555666666777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
+....+.. |+ +..+|-+.+..-.....++.|..+|.+....
T Consensus 607 l~~af~~~--pn------------------------------------seeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 607 LDQAFEAN--PN------------------------------------SEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHhC--CC------------------------------------cHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 76665431 11 2234444555555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 042546 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD-KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAI 517 (671)
Q Consensus 439 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~ 517 (671)
.|+...|.--+..---.++.++|.+++++..+. -|+- ..|-.+-..+-+.++++.|.+.|..-.+ .++-.+..|
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLW 722 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLW 722 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHH
Confidence 344445544444444455555555555555443 2332 2344444445555555555555544322 122223334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------------
Q 042546 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG----------------- 580 (671)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----------------- 580 (671)
-.|...=-+.|.+-.|..+++.-..+ -+-+...|-..|..-.+.|+.+.|..+..+..+.-
T Consensus 723 llLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~ 800 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRP 800 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCc
Confidence 44444444555555555555555443 22344455555555555555555555544443320
Q ss_pred ------------CCCCHHH---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 581 ------------FPPFVDP---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 581 ------------~~p~~~t---~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
+.-|... ....+-...+++.|.+.|.+..+.++.+-.+|.-+...+.++|.-++-.+++++...
T Consensus 801 ~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 801 QRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred ccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 1111111 123334456677888888888877776777787778888888877777777776543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.3e-09 Score=106.66 Aligned_cols=277 Identities=11% Similarity=-0.010 Sum_probs=168.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCcccHHHHH
Q 042546 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK-N-KPSVNCCTFLLRKIVVSKQLDMRLFS 393 (671)
Q Consensus 316 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g-~-~p~~~~~~~ll~~~~~~~~~~~~~~~ 393 (671)
+..+|..+|....++ +.-.......+-.+|...+++++|.++|+.+.+.. . .-+...|++.+..+-+.- ..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v------~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV------AL 406 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH------HH
Confidence 467888888886655 22234566677888999999999999999987531 1 113344444444331110 00
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
.. -|..+.+.+ +-.+.+|.++-++|.-.++.+.|++.|++..+.
T Consensus 407 s~------------------------------Laq~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl- 450 (638)
T KOG1126|consen 407 SY------------------------------LAQDLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL- 450 (638)
T ss_pred HH------------------------------HHHHHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-
Confidence 00 111222221 344566777777777777777777777766654
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 042546 474 SDV-GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL---LVNTYCSKNRAIDACKFVHNCVREYDLKPW 549 (671)
Q Consensus 474 ~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 549 (671)
.| ..++|+.+-.-+....++|.|...|+.... .|...|++ |-..|.+.++++.|+-.|+...+ +.|.
T Consensus 451 -dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~ 521 (638)
T KOG1126|consen 451 -DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPS 521 (638)
T ss_pred -CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCcc
Confidence 33 556666666666666777777777765533 34444444 34456777777777777776654 4443
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 042546 550 -HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626 (671)
Q Consensus 550 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~--~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~ 626 (671)
.+....+...+.+.|+.|+|++++++......+-...-| ...+...++.++|...++++....+.+..+|..+...|
T Consensus 522 nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 522 NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIY 601 (638)
T ss_pred chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 334445555566677777777777777643322111222 45556677777777777777776666667777777777
Q ss_pred HHcCCHHHHHHHHHhchH
Q 042546 627 FQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 627 ~~~g~~~~A~~~~~~m~~ 644 (671)
.+.|+.+.|+.-|.-+.+
T Consensus 602 k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 602 KRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHccchHHHHhhHHHhc
Confidence 777777777776665543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-07 Score=90.79 Aligned_cols=161 Identities=13% Similarity=0.141 Sum_probs=124.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496 (671)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (671)
.+-+.|++++|++.|-.+...= .-+..+...+.+.|....+...|.+++.+.... ++.|+.....|...|-+.|+-.+
T Consensus 533 t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhh
Confidence 3567789999999887765321 345667777888888889999999988665433 35567788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 042546 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL-VQRGFKDALSLLCL 575 (671)
Q Consensus 497 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~l~~~ 575 (671)
|.+.+-+--+ -++.+..|...|..-|....-+++|...|+... -+.|+..-|..||..|. +.|++.+|.++++.
T Consensus 611 afq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 611 AFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred hhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9988765433 456678888888888888888999999998875 47899999999987665 48999999999998
Q ss_pred HHhCCCCCCH
Q 042546 576 MKDHGFPPFV 585 (671)
Q Consensus 576 m~~~~~~p~~ 585 (671)
..+. ++-|.
T Consensus 686 ~hrk-fpedl 694 (840)
T KOG2003|consen 686 IHRK-FPEDL 694 (840)
T ss_pred HHHh-Cccch
Confidence 8654 33343
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-08 Score=101.73 Aligned_cols=195 Identities=10% Similarity=-0.035 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 379 (671)
..+|.++-..|+-.++.+.|++.|++..+. .| ...+|+.+-.-+.....+|.|..-|+..+ ..|...||+
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnA--- 491 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNA--- 491 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHH---
Confidence 355555555555555555555555554443 23 34444444444445555555555554433 122222221
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 459 (671)
|--+.-.|.|.++++.|+-.|+...+.+ +.+.+....+...+-+.|+.
T Consensus 492 -------------------------------wYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~ 539 (638)
T KOG1126|consen 492 -------------------------------WYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRK 539 (638)
T ss_pred -------------------------------HHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhh
Confidence 2233334455555555555555554433 33444444444445555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVH 538 (671)
Q Consensus 460 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 538 (671)
|+|++++++..... ..|+..---....+...++.++|+..++++++ +.|+ ...|..+...|.+.|+.+.|..-|.
T Consensus 540 d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~ 615 (638)
T KOG1126|consen 540 DKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFS 615 (638)
T ss_pred hHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence 55555555554332 12222222223333444455555555555543 2222 2333444444555555555544444
Q ss_pred HH
Q 042546 539 NC 540 (671)
Q Consensus 539 ~m 540 (671)
-+
T Consensus 616 ~A 617 (638)
T KOG1126|consen 616 WA 617 (638)
T ss_pred HH
Confidence 44
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-05 Score=81.26 Aligned_cols=361 Identities=14% Similarity=0.065 Sum_probs=263.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH----HHHcCCCCCHHHHHHHH
Q 042546 268 DLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDE----MRSKGYEMEMETCVKVL 343 (671)
Q Consensus 268 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~li 343 (671)
.++..+.+. .-++.|.++++...+ .++.+...|-+-...=-.+|+.+...++.++ +...|+..+..-|-.=.
T Consensus 411 dLwlAlarL--etYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eA 486 (913)
T KOG0495|consen 411 DLWLALARL--ETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEA 486 (913)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHH
Confidence 344444444 567788888888874 4577888888777777788888888887754 44568888888888777
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 042546 344 GRFSERNMVKEAVDLYEFAMACKNKPS--VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421 (671)
Q Consensus 344 ~~~~~~g~~~~a~~l~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (671)
..|-..|.+-.+..+......-|+.-. ..||..--..|.+.+..+ .+..++.... .-.+.+...|......=-..
T Consensus 487 e~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~--carAVya~al-qvfp~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 487 EACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIE--CARAVYAHAL-QVFPCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHH--HHHHHHHHHH-hhccchhHHHHHHHHHHHhc
Confidence 778888888888888777776666543 345665556665555433 2333333332 22445556777777766777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 501 (671)
|..++-..+|++....- +.....|-....-+-..|++..|..++....+... -+...|-+-+..-..+.+++.|..+|
T Consensus 564 gt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHH
Confidence 88888888998887653 44556777777888889999999999998887753 26677888888889999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042546 502 QKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580 (671)
Q Consensus 502 ~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 580 (671)
.+... ..|+...|.--+..---.+..++|.+++++..+.+ |+ ...|-.+-+-+-+.++++.|.+.|..-.+
T Consensus 642 akar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f---p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k-- 713 (913)
T KOG0495|consen 642 AKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF---PDFHKLWLMLGQIEEQMENIEMAREAYLQGTK-- 713 (913)
T ss_pred HHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC---CchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--
Confidence 98854 56777777766666666789999999998888643 33 34555666667778888888887765443
Q ss_pred CCCCHHHHHHHH----HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 581 FPPFVDPFIKYV----SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 581 ~~p~~~t~~~~l----~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
.-|+...+.-.+ .+.|.+-.|..+++...-+.|.+...|...|.+=.+.|+.+.|..+..+..+.
T Consensus 714 ~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 714 KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346655553333 46788999999999988888889999999999999999999998877665443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-08 Score=92.75 Aligned_cols=165 Identities=12% Similarity=0.089 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..+...|...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 456666777777788888888877776543 3445666777777777777777777777776654 23445666666777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGT-SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 567 (671)
...|++++|.+.+++..+ ... ......+..+...|...|++++|...|.+.... .+.+...+..+...+...|+++
T Consensus 110 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHcccHHHHHHHHHHHHh-ccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHH
Confidence 777777777777777765 321 223344555566666677777777777666542 1223345555555566666666
Q ss_pred HHHHHHHHHHh
Q 042546 568 DALSLLCLMKD 578 (671)
Q Consensus 568 ~A~~l~~~m~~ 578 (671)
+|.+.+++..+
T Consensus 187 ~A~~~~~~~~~ 197 (234)
T TIGR02521 187 DARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHHHH
Confidence 66666665554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.1e-08 Score=92.93 Aligned_cols=198 Identities=14% Similarity=0.107 Sum_probs=160.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 042546 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520 (671)
Q Consensus 441 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 520 (671)
.....+..+...|...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+ .. +.+...+..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~~ 105 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALT-LN-PNNGDVLNNY 105 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHH
Confidence 345677888899999999999999999998764 33567788899999999999999999999987 33 3355677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHhcC
Q 042546 521 VNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD----PFIKYVSKSG 596 (671)
Q Consensus 521 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~----t~~~~l~~~g 596 (671)
...|...|++++|.+.|.+.............+..+...+...|++++|.+.+++..+. .|+.. .+...+...|
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcC
Confidence 88999999999999999999763222234456777888899999999999999998864 34322 2245667899
Q ss_pred ChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 597 TSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 597 ~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
++++|...+++.....+.+...+..+...+...|+.++|..+.+.+.
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999888755677888888999999999999999887765
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-06 Score=82.65 Aligned_cols=292 Identities=13% Similarity=0.062 Sum_probs=192.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 042546 272 FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM 351 (671)
Q Consensus 272 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 351 (671)
.+.+...|++..|++...+-.+. + +-....|..-..+--+.|+.+.+-.++.+..+.--.++...+-+........|+
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~-~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEH-G-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhc-C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 34444459999999998886642 2 344566666677888889999999999998887445667777778888889999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCH
Q 042546 352 VKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA-------MLNSVLKALISVGRM 424 (671)
Q Consensus 352 ~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~ 424 (671)
.+.|..-..++.+.+.. +.........+|.+.|. ......++..+.+.+.-.|.. +|+.++.-....+..
T Consensus 169 ~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~--~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 169 YPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGA--WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred chhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhcc--HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999988888765433 33445666666666663 334556666666666655543 466666555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 504 (671)
+.-...++...+. .+.++..-.+++.-+.++|+.++|.++..+..+.+..|+..+ .-.+.+.++.+.-.+..+.-
T Consensus 246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHH
Confidence 5544445444332 234455556666777777777777777777777665555222 22345556666555555555
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 505 VEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 505 ~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
.+..+-.| ..+.+|-..|.+.+.+.+|...|+...+ ..|+..+|+.+-+++.+.|+..+|.+++++...
T Consensus 321 l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 321 LKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44344444 4566777777777777777777775543 467777777777777777777777777776553
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-06 Score=84.77 Aligned_cols=212 Identities=12% Similarity=0.022 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 523 (671)
.|...+.+-|+-.++.|+|...|++..+.+ +.....|+.|.+-|....+...|.+-++...+ -.+-|-..|-.|-++
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQA 407 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHH
Confidence 344556667778889999999999998765 33567799999999999999999999999987 234578889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHhcCChH
Q 042546 524 YCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP---FIKYVSKSGTSD 599 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t---~~~~l~~~g~~~ 599 (671)
|.-.+...-|.-.|++... ++| |...|.+|-.+|.+.++.++|++.|+.....|-. +... +..++-+.++.+
T Consensus 408 Yeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHH
Confidence 9999999999999999875 444 6789999999999999999999999998875533 2222 357778899999
Q ss_pred HHHHHHHHhhh----CCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHhhhcC
Q 042546 600 DAIAFLKGMTS----KRFPSM---SVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSG 662 (671)
Q Consensus 600 ~A~~~~~~m~~----~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~~ 662 (671)
+|..+++.-.. .+..+. ..-.-|..-+.+.+++++|..............+++..|+.+....
T Consensus 484 eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 484 EAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 99998877655 122222 2333366778899999999998887776666678888888877543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.6e-08 Score=102.81 Aligned_cols=190 Identities=10% Similarity=-0.033 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD-KMWVSLIKGH 488 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~ 488 (671)
.+..+-..+...|++++|...|++..+.+ +.+...|..+...+...|++++|...+++..+.. |+. ..+..++..+
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~ 416 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWIT 416 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHH
Confidence 34455555666677777777777766654 3345566666667777777777777777776653 332 2222333345
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH-TTYEELIKNLLVQRGF 566 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~ 566 (671)
...|++++|.+.+++..+ .. .| +...+..+..+|...|+.++|...+.++... .|+. ...+.+...|...|
T Consensus 417 ~~~g~~eeA~~~~~~~l~-~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g-- 489 (553)
T PRK12370 417 YYHTGIDDAIRLGDELRS-QH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQNS-- 489 (553)
T ss_pred HhccCHHHHHHHHHHHHH-hc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhccH--
Confidence 556677777777776654 22 23 2333555556666777777777777665432 2332 23334444445555
Q ss_pred HHHHHHHHHHHhCC-CCCCHH-HHHHHHHhcCChHHHHHHHHHhhh
Q 042546 567 KDALSLLCLMKDHG-FPPFVD-PFIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 567 ~~A~~l~~~m~~~~-~~p~~~-t~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
++|...++.+.+.. ..|... .+-..+.-.|+-+.+... +++.+
T Consensus 490 ~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 490 ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 35555555544311 112111 123334445555555554 55554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-05 Score=77.36 Aligned_cols=433 Identities=12% Similarity=0.065 Sum_probs=256.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
-|++.-|+++|+.--+ ..|+...|++.|..=.+...++.|..+|++.+-. .|++.+|.--..-=-+.|...-+..
T Consensus 154 LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred hcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 4889999999987654 5599999999999999999999999999998765 5899888888777777777776665
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHH--HhCCChHHHHHHHHHHHHcCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVD--KLGDEPKKALIFFRWAEESGFVK 298 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~A~~~f~~~~~~~~~~ 298 (671)
+.+.-.+.-.++.. ...++..... ..+...+.|.-+|+-.... ++
T Consensus 229 VyerAie~~~~d~~-------------------------------~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~p 275 (677)
T KOG1915|consen 229 VYERAIEFLGDDEE-------------------------------AEILFVAFAEFEERQKEYERARFIYKYALDH--IP 275 (677)
T ss_pred HHHHHHHHhhhHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 54432221111110 0011111111 1125666677777665542 23
Q ss_pred CC--HHHHHHHHHHHHccCChHHHHHH--------HHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 042546 299 HD--ESSYNAMASVLGREDCIDRFWKV--------LDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368 (671)
Q Consensus 299 ~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 368 (671)
.+ ...|......=-+.|+.....+. ++.+.+.+ +-|-.+|--.+..-...|+.+...++|+..... +.
T Consensus 276 k~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vp 353 (677)
T KOG1915|consen 276 KGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VP 353 (677)
T ss_pred cccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CC
Confidence 33 44555555554555654443332 33444432 346778888888888889999999999988743 33
Q ss_pred CCH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042546 369 PSV--NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMK 446 (671)
Q Consensus 369 p~~--~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 446 (671)
|-. ..|.-.|-.+. |-.+-.=....+++.+.++|+...+ =++....|+
T Consensus 354 p~~ekr~W~RYIYLWi-----------------------------nYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtF 403 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWI-----------------------------NYALYEELEAEDVERTRQVYQACLD-LIPHKKFTF 403 (677)
T ss_pred chhHHHHHHHHHHHHH-----------------------------HHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchH
Confidence 311 11111111110 1111111235667777777776665 223344455
Q ss_pred HHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 042546 447 SKIAFRLS----SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522 (671)
Q Consensus 447 ~~li~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 522 (671)
.-+=-+|+ ++.++..|.+++.... |.-|-..+|...|..=.+.+++|.+..++++..+ .+ +-|..+|.-...
T Consensus 404 aKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-~~-Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 404 AKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-FS-PENCYAWSKYAE 479 (677)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-hHhhHHHHHHHH
Confidence 44433333 4667777777777655 3467777777777777777777888888777766 32 225556666555
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH-----HhcC
Q 042546 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-PPFVDPFIKYV-----SKSG 596 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~~t~~~~l-----~~~g 596 (671)
.=...|+.|.|..+|.-..++.........|.+.|+--...|.+++|..+++++.+..- .+...+|...= .+.|
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~ 559 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQED 559 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccc
Confidence 55667777888877777766544444555666666666667777888888777765421 11112221111 1223
Q ss_pred -----------ChHHHHHHHHHhhh--CCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHhchHhhh
Q 042546 597 -----------TSDDAIAFLKGMTS--KRFPSMS----VVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647 (671)
Q Consensus 597 -----------~~~~A~~~~~~m~~--~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 647 (671)
.+..|..+|++... +...+.. ......+.=...|...+...+-..||..+.
T Consensus 560 ~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vK 627 (677)
T KOG1915|consen 560 EDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVK 627 (677)
T ss_pred cchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHH
Confidence 46678888877654 1111122 223333444556777777777788887653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.2e-06 Score=82.13 Aligned_cols=401 Identities=11% Similarity=0.038 Sum_probs=227.6
Q ss_pred CCChHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLS-SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVA-SHVRNKMTEKFEKEGLESDL 218 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~-~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~ 218 (671)
.|.+++|.+.+++..+ ..|| ++-|...-.+|...|+++++.+---+.++. .|+ +-.+..--+++-..|+++++
T Consensus 128 ~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ea 202 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEA 202 (606)
T ss_pred cccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHH
Confidence 5899999999999987 3477 788999999999999999988766655544 444 23344444677788888877
Q ss_pred HH---HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHh--hcccccChHHHHHHHHHhCCChHHHHHHHHHHHH
Q 042546 219 EK---LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLR--DLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE 293 (671)
Q Consensus 219 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~ 293 (671)
.. +..++............-..+.... -+.....+. +..+-+++.++..|+..+..++.-..
T Consensus 203 l~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-----~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~-------- 269 (606)
T KOG0547|consen 203 LFDVTVLCILEGFQNASIEPMAERVLKKQA-----MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLF-------- 269 (606)
T ss_pred HHhhhHHHHhhhcccchhHHHHHHHHHHHH-----HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccc--------
Confidence 52 2222222221111111111100000 011122222 22334677777777766532221110
Q ss_pred cCCCCCCHHHHHHHHHHH----Hcc-CChHHHHHHHHHHHHcC-CCC-----CHH------HHHHHHHHHHhCCChHHHH
Q 042546 294 SGFVKHDESSYNAMASVL----GRE-DCIDRFWKVLDEMRSKG-YEM-----EME------TCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 294 ~~~~~~~~~~~~~li~~~----~~~-g~~~~A~~~~~~m~~~g-~~p-----~~~------t~~~li~~~~~~g~~~~a~ 356 (671)
..+...+...+..++ ... ..++.|.+.+.+-.... ..+ |.. +...--.-+.-.|+.-.|.
T Consensus 270 ---~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 270 ---DNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ---cCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 001111111111111 110 12233333332211100 000 100 1111111112234444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
.-|+...+... . +...|--+-.+|....+.++..+.|+...+
T Consensus 347 ~d~~~~I~l~~-------------------------------------~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ 388 (606)
T KOG0547|consen 347 EDFDAAIKLDP-------------------------------------A-FNSLYIKRAAAYADENQSEKMWKDFNKAED 388 (606)
T ss_pred hhHHHHHhcCc-------------------------------------c-cchHHHHHHHHHhhhhccHHHHHHHHHHHh
Confidence 44444443211 1 111255566678888888888889988887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~ 516 (671)
.+ +-|..+|..-..++.-.+++++|..=|++.+... +-+...|.-+--+.-+.+.++++...|++.++ .++--...
T Consensus 389 ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Ev 464 (606)
T KOG0547|consen 389 LD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEV 464 (606)
T ss_pred cC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchH
Confidence 65 4566677777777777888999999998887653 22455666666666788899999999999887 35555667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-------HH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-------HT--TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-- 585 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-------~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-- 585 (671)
|+.....+...++++.|.+.|+...+ +.|+ .. +--+++..- =.+++..|.+++++..+. .|-.
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~ 538 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQ 538 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHh---hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHH
Confidence 88888888889999999999988764 2333 11 111222111 247888999999988764 4443
Q ss_pred --HHHHHHHHhcCChHHHHHHHHHhhh
Q 042546 586 --DPFIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 586 --~t~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
.++.....+.|++++|+++|++-..
T Consensus 539 A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 539 AYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445555788999999999987654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.9e-05 Score=76.76 Aligned_cols=439 Identities=10% Similarity=0.016 Sum_probs=249.7
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-cCCCCChHHHHHHHHHH
Q 042546 165 KTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFA-TGSIDNSIEKVASRICK 243 (671)
Q Consensus 165 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 243 (671)
..|++|-+-|.+.|.++.|.++|++-.+. ..++.-|+.+.++|+.-....-+..+. +-. +.........+...+..
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHH
Confidence 56889999999999999999999887765 336667788888887653211111111 100 01111100000000000
Q ss_pred HHhcC-CChhHHHHHHhhcccccChHHHHHH---HHHhCCChHHHHHHHHHHHHcCCCCCC------HHHHHHHHHHHHc
Q 042546 244 VVRSD-IWGDDVERQLRDLNVTFSNDLVKFV---VDKLGDEPKKALIFFRWAEESGFVKHD------ESSYNAMASVLGR 313 (671)
Q Consensus 244 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~A~~~f~~~~~~~~~~~~------~~~~~~li~~~~~ 313 (671)
+-.-- ....-+-..+.+ -.++.+... .....|+..+-..+|.+....- .|- ...|..+.+.|-.
T Consensus 326 ~e~lm~rr~~~lNsVlLR----Qn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~v--dP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLR----QNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTV--DPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHhccchHHHHHHHh----cCCccHHHHHhhhhhhcCChHHHHHHHHHHHHcc--CcccCCCChhhHHHHHHHHHHh
Confidence 00000 000000011111 111222222 2223466666677777665421 221 2457777777888
Q ss_pred cCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHH
Q 042546 314 EDCIDRFWKVLDEMRSKGYEME---METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390 (671)
Q Consensus 314 ~g~~~~A~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 390 (671)
+|+++.|..+|++..+-..+-- ..+|..-...=.+..+++.|+.+.+.... .|.... + .+...+.+-..
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~pvQ~ 471 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDNSEPVQA 471 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcCCCcHHH
Confidence 8888888888887766533211 23333333334455566777776665542 333211 1 11122211110
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
+ +..+..+|...++.--..|-++....+++.+.+..+.......| ...-+-.+.-++++.+++++=.
T Consensus 472 ---r---------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI 538 (835)
T KOG2047|consen 472 ---R---------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGI 538 (835)
T ss_pred ---H---------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCC
Confidence 1 11123456667777777889999999999998766432222222 2222335666889999888655
Q ss_pred HCCCCCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhC
Q 042546 471 ASGSDVGDK-MWVSLIKGHCV---AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT--YCSKNRAIDACKFVHNCVREY 544 (671)
Q Consensus 471 ~~g~~~~~~-~~~~li~~~~~---~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~ 544 (671)
..--.|++. .|++-+.-+.+ ...++.|..+|++..+ |++|...-+--|+-+ =-+.|....|+.++++...
T Consensus 539 ~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-- 614 (835)
T KOG2047|consen 539 SLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-- 614 (835)
T ss_pred ccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--
Confidence 443355553 47776666544 3478999999999987 777654332222211 1246889999999999875
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH------HHHHHHhcCChHHHHHHHHHhhhC-CC-C
Q 042546 545 DLKPWH--TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP------FIKYVSKSGTSDDAIAFLKGMTSK-RF-P 614 (671)
Q Consensus 545 ~~~p~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t------~~~~l~~~g~~~~A~~~~~~m~~~-~~-p 614 (671)
++++.. ..||..|.--+..=.+....++|++..+. -|+... |..+=++.|.++.|..++..-.+- .| .
T Consensus 615 ~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~ 692 (835)
T KOG2047|consen 615 AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRV 692 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcC
Confidence 455543 47888887555544456677788888764 566543 344457899999999999877664 33 4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 615 SMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 615 ~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
+...|.+.=.-=.++|+-+...+.+
T Consensus 693 ~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 693 TTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6778988888888999954444333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.5e-06 Score=81.26 Aligned_cols=245 Identities=13% Similarity=0.082 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..-|.++...|+..+-..+=.+|.+.- +....+|-++..-|-..|+.++|.+.|.+...-. ..=...|-....+|
T Consensus 279 ~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 279 PCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSF 356 (611)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHh
Confidence 334445556677777666666666666543 5567888888888888899999999998876432 11235788888999
Q ss_pred HhcCCHHHHHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 042546 489 CVAGDLDKAADCFQKMVEKE-G-TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRG 565 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~-g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 565 (671)
+-.|.-|+|...+...-+.. | ..|.. | +---|.+.+..+.|.++|.+... +.| |....+-+--...+.+.
T Consensus 357 a~e~EhdQAmaaY~tAarl~~G~hlP~L--Y--lgmey~~t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~ 429 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMPGCHLPSL--Y--LGMEYMRTNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEE 429 (611)
T ss_pred hhcchHHHHHHHHHHHHHhccCCcchHH--H--HHHHHHHhccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhh
Confidence 99999999998887765411 1 12222 2 22246778899999999988864 334 45556666555566788
Q ss_pred HHHHHHHHHHHHhC---------CCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 042546 566 FKDALSLLCLMKDH---------GFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 566 ~~~A~~l~~~m~~~---------~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 636 (671)
+.+|..+|+..... -..|....+...+.+.+++++|+..++......+.+..+|.++.-.|...|+++.|.
T Consensus 430 y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Ai 509 (611)
T KOG1173|consen 430 YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAI 509 (611)
T ss_pred hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHH
Confidence 89999988876621 122333445677789999999999999999888889999999999999999999999
Q ss_pred HHHHhchHhhhccHHHHHHHHhhhcC
Q 042546 637 DLLSKCPRYVRNHADVLNLLYSKKSG 662 (671)
Q Consensus 637 ~~~~~m~~~~~~~~~~~~l~~~m~~~ 662 (671)
+.|++..--.++..-+.+++..+.+.
T Consensus 510 d~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 510 DHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99998665444555566666665544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.3e-07 Score=92.05 Aligned_cols=235 Identities=17% Similarity=0.112 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-C
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEG-----GF-IASSN-MKSKIAFRLSSAGKKDEANEFMDHMEAS-----GS-D 475 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~ 475 (671)
.+..-+..+|...|+++.|..+++...+. |. .|... ..+.+...|...+++.+|..+|+++... |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46666889999999999999999987653 21 23333 3344777889999999999999998642 21 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--C
Q 042546 476 VG-DKMWVSLIKGHCVAGDLDKAADCFQKMVEK----EGT-SHAGY-AIDLLVNTYCSKNRAIDACKFVHNCVREYD--L 546 (671)
Q Consensus 476 ~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~g~-~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~ 546 (671)
|. ..+++.|-.+|.+.|++++|...+++..+- .|. .|.+. -++.+...|+..+++++|..+++...+... .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 345777778899999999998888776541 122 22222 246667778899999999999987654322 2
Q ss_pred CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--CCCHHH----HHHHHHhcCChHHHHHHHHHhhh--
Q 042546 547 KPWH----TTYEELIKNLLVQRGFKDALSLLCLMKDHG----F--PPFVDP----FIKYVSKSGTSDDAIAFLKGMTS-- 610 (671)
Q Consensus 547 ~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----~--~p~~~t----~~~~l~~~g~~~~A~~~~~~m~~-- 610 (671)
.++. .+++.|-..|.+.|++++|.+++++..... - .+.... +...|.+.++.++|..+|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3333 488999999999999999999999876421 1 222222 24555678888888888876543
Q ss_pred --CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 611 --KRF--P-SMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 611 --~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
-++ | ...+|..|...|.+.|++++|.++-+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 3 35679999999999999999999998865
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.9e-05 Score=72.70 Aligned_cols=316 Identities=12% Similarity=0.017 Sum_probs=199.9
Q ss_pred HHHHHHHHcc--CChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042546 305 NAMASVLGRE--DCIDRFWKVLDEMRSK-GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKI 381 (671)
Q Consensus 305 ~~li~~~~~~--g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~ 381 (671)
..-|.+++++ ++...|...+-.+... -++-|+.....+...+...|+.++|...|+..+- +.|+..+ .+
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~--~M---- 269 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVE--AM---- 269 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhh--hH----
Confidence 3334444433 3444444444333332 2444677777888888888888888888887653 2232211 00
Q ss_pred HhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 382 VVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDE 461 (671)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 461 (671)
..|..| +.+.|+.+....+...+.... .-....|-.-........+++.
T Consensus 270 ---------------------------D~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~r 318 (564)
T KOG1174|consen 270 ---------------------------DLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFER 318 (564)
T ss_pred ---------------------------HHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHH
Confidence 012222 245666666666666655321 1222333333444456778888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS-HAGYAIDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 462 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
|+.+-++-.+.. ..+...|-.=-..+...|++++|.-.|+.... +. .+..+|..|+.+|...|++.+|.-.-+..
T Consensus 319 AL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 319 ALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 888888877553 22334444444566778899999999988865 33 46778999999999999999987766655
Q ss_pred HHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 042546 541 VREYDLKPWHTTYEELI-KNLL-VQRGFKDALSLLCLMKDHGFPPFVD----PFIKYVSKSGTSDDAIAFLKGMTSKRFP 614 (671)
Q Consensus 541 ~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~l~~~m~~~~~~p~~~----t~~~~l~~~g~~~~A~~~~~~m~~~~~p 614 (671)
.+- +.-+..+...+- ..+. ....-++|.+++++-.. +.|+.. .....+...|+.++++.+++..... .|
T Consensus 395 ~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~-~~ 469 (564)
T KOG1174|consen 395 IRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII-FP 469 (564)
T ss_pred HHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh-cc
Confidence 442 223344443331 1122 22334889999887764 466653 3356667899999999999987753 47
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHhhhcCCCCCCC
Q 042546 615 SMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSGGDSAPA 668 (671)
Q Consensus 615 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~~g~~p~~ 668 (671)
|....+.|.+.+...+.+.+|.+.|.....--+.....++=+..|.+..-+||+
T Consensus 470 D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~DA 523 (564)
T KOG1174|consen 470 DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDESDA 523 (564)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCCCc
Confidence 888999999999999999999999998765555566666666666665556653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.4e-06 Score=90.97 Aligned_cols=211 Identities=7% Similarity=-0.072 Sum_probs=151.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499 (671)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 499 (671)
..+++++|...+++..+.. +-+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456899999999998875 5577888888888999999999999999998874 3346678888889999999999999
Q ss_pred HHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 500 CFQKMVEKEGTSHAG-YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 500 ~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
.+++..+ ..|+. ..+..+...+...|++++|...+++.... ..|+ ...+..+...+...|+.++|.+.++++.
T Consensus 394 ~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 394 TINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 9999987 33432 22333444566689999999999998753 2343 3446667778889999999999999876
Q ss_pred hCCCCCCHHHHHH----HHHhcCChHHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 578 DHGFPPFVDPFIK----YVSKSGTSDDAIAFLKGMTSKRF--PSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 578 ~~~~~p~~~t~~~----~l~~~g~~~~A~~~~~~m~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.. .|+..+... .+...| ++|...++.+.+... +....+ +-..|.-.|+.+.+..+ +++.+
T Consensus 469 ~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 469 TQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred hc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 43 555444433 334445 588888877766321 222233 34455566777777766 66553
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.4e-06 Score=84.41 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=107.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (671)
|.+......+.+|+.+++.+..+. .-..-|..+.+-|+..|+++.|.++|-+.- .++-.|..|.++|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 344455566667777776666542 222345566666777777777777665422 244456667777777
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 574 (671)
++|.++-.+. .|-+.....|-+-..-+-+.|++.+|.+++-.+. .|+. -|..|-+.|..++.+++.+
T Consensus 808 ~da~kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 808 EDAFKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHH
Confidence 7776665554 3444445555555555566666666666664432 2332 3556666666666666665
Q ss_pred HHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 042546 575 LMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLS 640 (671)
Q Consensus 575 ~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 640 (671)
+-.-.-+..+...|..-|...|++..|+.-|-+... |.+-++.|..++.|++|.++-+
T Consensus 875 k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 875 KHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------HHHHHHHhhhhhhHHHHHHHHh
Confidence 543222222223345555556666666655543322 4445555555566665555544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.6e-05 Score=81.40 Aligned_cols=285 Identities=15% Similarity=0.113 Sum_probs=194.8
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-h-----CC
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESS-YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS-E-----RN 350 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~-----~g 350 (671)
.|+.++|++.+..-.. .-+|..+ .......+.+.|+.++|..++..+.+++ |+...|...+..+. . ..
T Consensus 17 ~g~~~~AL~~L~~~~~---~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEK---QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred CCCHHHHHHHHHhhhh---hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccccc
Confidence 4999999999987653 2566555 4566788899999999999999999984 67666665555444 2 23
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430 (671)
Q Consensus 351 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 430 (671)
..+...++|+++...- |.......+.-.+. .|..=...+...+..+...|++ .+|+.+-..|......+-..++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~-~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFL-EGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccC-CHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 5788888999886542 33322222211111 1111123455555556666765 3567777777766666556666
Q ss_pred HHHHHHC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 042546 431 LKAMEEG----G----------FIASSN--MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVSLIKGHCVAGD 493 (671)
Q Consensus 431 ~~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~ 493 (671)
+...... + -+|... ++.-+...|-..|++++|++++++..+. .|+ +..|..-...+-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 6665432 1 134443 4456677788999999999999998887 565 5568888888999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhcCC
Q 042546 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT------TY--EELIKNLLVQRG 565 (671)
Q Consensus 494 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~------~~--~~li~~~~~~g~ 565 (671)
+++|.+..+..++ ... -|...-+-.+..+.++|++++|.+++....+. +..|-.. .| .....+|.+.|+
T Consensus 244 ~~~Aa~~~~~Ar~-LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 244 LKEAAEAMDEARE-LDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred HHHHHHHHHHHHh-CCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999977 322 36666677778888999999999999988764 4333322 23 344567888999
Q ss_pred HHHHHHHHHHHHh
Q 042546 566 FKDALSLLCLMKD 578 (671)
Q Consensus 566 ~~~A~~l~~~m~~ 578 (671)
+..|++-|....+
T Consensus 321 ~~~ALk~~~~v~k 333 (517)
T PF12569_consen 321 YGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887776653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.88 E-value=0.00014 Score=74.41 Aligned_cols=386 Identities=13% Similarity=0.038 Sum_probs=225.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
-|+-++|......-.. +-..+.++|..+--.+-...++++|++.|.....-+ +-|...+.-+--.=+..
T Consensus 54 lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~Qm-------- 122 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQM-------- 122 (700)
T ss_pred ccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHH--------
Confidence 4778888777665544 222567888877777777788889998888877653 12233332111111111
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
++++.....-.+..+. .+..
T Consensus 123 ----------------------------------------------------------Rd~~~~~~tr~~LLql--~~~~ 142 (700)
T KOG1156|consen 123 ----------------------------------------------------------RDYEGYLETRNQLLQL--RPSQ 142 (700)
T ss_pred ----------------------------------------------------------HhhhhHHHHHHHHHHh--hhhh
Confidence 2222222222222211 1344
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHH------HHhCCChHHHHHHHHHHHhCCCCCCHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKG-YEMEMETCVKVLGR------FSERNMVKEAVDLYEFAMACKNKPSVNC 373 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~------~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 373 (671)
...|..+.-++--.|+...|..+.++..+.- -.|+...|...... ....|.+++|.+....-...
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-------- 214 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-------- 214 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--------
Confidence 5778888888888899999999998887764 24666666544333 34556666666665543321
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 042546 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF-R 452 (671)
Q Consensus 374 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~-~ 452 (671)
+++.+ ..--+-...+.+.+++++|..++..+..+. ||..-|.-.+. +
T Consensus 215 ---------------------i~Dkl---------a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 215 ---------------------IVDKL---------AFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKA 262 (700)
T ss_pred ---------------------HHHHH---------HHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHH
Confidence 00000 011223445688999999999999999874 77776665544 4
Q ss_pred HHhcCCHHHHH-HHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 453 LSSAGKKDEAN-EFMDHMEASGSDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530 (671)
Q Consensus 453 ~~~~g~~~~A~-~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 530 (671)
+.+--+.-++. .+|....+. .|.... -..=++......-.+..-+++..+.+ .|+++- +..+...|-.-...
T Consensus 263 lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~-Kg~p~v---f~dl~SLyk~p~k~ 336 (700)
T KOG1156|consen 263 LGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS-KGVPSV---FKDLRSLYKDPEKV 336 (700)
T ss_pred HHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhh-cCCCch---hhhhHHHHhchhHh
Confidence 43333333333 666665543 111111 00011111112333445556666666 676543 33344333332222
Q ss_pred HHHHHHHHHHHHh-CC------------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHH
Q 042546 531 IDACKFVHNCVRE-YD------------LKPWHTTY--EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKY 591 (671)
Q Consensus 531 ~~A~~~~~~m~~~-~~------------~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~ 591 (671)
+--.++.-.+... .+ -.|....| -.++..+-+.|+++.|...++...++ .|+..-+ ...
T Consensus 337 ~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI 414 (700)
T KOG1156|consen 337 AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARI 414 (700)
T ss_pred HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHH
Confidence 2222222222110 01 14555544 45667788899999999999988854 6766544 377
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 592 VSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 592 l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
+.+.|.+++|..++++....+.+|...=.--..-..++.+.++|.++...-...
T Consensus 415 ~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~ 468 (700)
T KOG1156|consen 415 FKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTRE 468 (700)
T ss_pred HHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhc
Confidence 789999999999999998877778777666777888899999998888776543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=0.00018 Score=73.36 Aligned_cols=457 Identities=11% Similarity=0.093 Sum_probs=225.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
++++..-++.|+......+++--...|...|.-...+|-++-++.++++-.+. ++..-.--|.-+++.++++++.+
T Consensus 115 Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~ 190 (835)
T KOG2047|consen 115 QGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQ 190 (835)
T ss_pred cchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHH
Confidence 68888899999988775555555567988898888899999999999988766 55567788888888988888775
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
-...+-..... ++... -.+.....++...+.+..-.+.+.-+.. +++.+. +.-+|
T Consensus 191 ~la~vln~d~f--~sk~g------kSn~qlw~elcdlis~~p~~~~slnvda--------------iiR~gi---~rftD 245 (835)
T KOG2047|consen 191 RLATVLNQDEF--VSKKG------KSNHQLWLELCDLISQNPDKVQSLNVDA--------------IIRGGI---RRFTD 245 (835)
T ss_pred HHHHhcCchhh--hhhcc------cchhhHHHHHHHHHHhCcchhcccCHHH--------------HHHhhc---ccCcH
Confidence 44322111000 00000 0000000111111111111111111122 222221 11344
Q ss_pred H--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC----------------------hHHHH
Q 042546 301 E--SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM----------------------VKEAV 356 (671)
Q Consensus 301 ~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~----------------------~~~a~ 356 (671)
. ..|++|.+-|.+.|.++.|.++|++-... .....-|+.+.++|++-.. ++-..
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 3 57899999999999999999999887765 2245556666666654321 11222
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH-HHhcCcccHH--------------HHHHHHHHHHHcCCCCC------HHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRK-IVVSKQLDMR--------------LFSKVVRVFRENGNVLT------DAMLNSVL 415 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~------~~~~~~li 415 (671)
.-|+.+...+ ..+++. +.+.+....+ .....+.+..+ .+.|. ...|..+.
T Consensus 324 a~~e~lm~rr--------~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~-~vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 324 ARFESLMNRR--------PLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK-TVDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred HHHHHHHhcc--------chHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH-ccCcccCCCChhhHHHHHH
Confidence 2222222111 011111 1111100000 11111111111 11111 12466666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------------
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIAS---SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV---------------- 476 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---------------- 476 (671)
+.|-..|+++.|..+|++..+-.++-- ..+|..-..+=.++.+++.|+++.+.....--.|
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 666777777777777776665332211 2334444444445566666666666554321111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 477 -GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT-SHAGYA-IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY 553 (671)
Q Consensus 477 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 553 (671)
+...|...++.--..|-++....+++++.+ ..+ .|.... |..+ +-.+.-++++.+++++-..-+..+--...|
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriid-LriaTPqii~NyAmf---LEeh~yfeesFk~YErgI~LFk~p~v~diW 550 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIID-LRIATPQIIINYAMF---LEEHKYFEESFKAYERGISLFKWPNVYDIW 550 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HhcCCHHHHHHHHHH---HHhhHHHHHHHHHHHcCCccCCCccHHHHH
Confidence 112333344444444556666666666665 332 232221 1111 123445566666665544321111112345
Q ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHH-HHHHH----HhcCChHHHHHHHHHhhhCCCC--CHHHHHHHH
Q 042546 554 EELIKNLLV---QRGFKDALSLLCLMKDHGFPPFVDP-FIKYV----SKSGTSDDAIAFLKGMTSKRFP--SMSVVLCLF 623 (671)
Q Consensus 554 ~~li~~~~~---~g~~~~A~~l~~~m~~~~~~p~~~t-~~~~l----~~~g~~~~A~~~~~~m~~~~~p--~~~~~~~l~ 623 (671)
+..+.-+.+ ...++.|..+|++..+ |++|...- +--.| .+.|....|.+++++......+ -...|+..|
T Consensus 551 ~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I 629 (835)
T KOG2047|consen 551 NTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYI 629 (835)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 554444333 3356777777777776 56665432 22222 2456677777777776654432 234555555
Q ss_pred HHHHHcCCHHHHHHHHHhc
Q 042546 624 AAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 624 ~~~~~~g~~~~A~~~~~~m 642 (671)
.--...=-...-.+++++.
T Consensus 630 ~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 630 KKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHhCCcccHHHHHHH
Confidence 4333322233344455543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.7e-05 Score=81.29 Aligned_cols=288 Identities=12% Similarity=0.088 Sum_probs=194.6
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcC-
Q 042546 309 SVLGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV-VSK- 385 (671)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~-~~~- 385 (671)
..+...|++++|++.++.-... -+| ..........+.+.|+.++|..+|..+.+. .|+...|-..+..+. -..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcc
Confidence 4567889999999999775543 345 455566778889999999999999999976 566666554444443 222
Q ss_pred --cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 386 --QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM-GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462 (671)
Q Consensus 386 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 462 (671)
..+.....++++++...- |.......+.-.+..-..+ ..+...+..+.+.|++ .+++.|-..|....+.+-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHH
Confidence 223455666666665433 2211121221112221222 3455666777788864 3566677777766666666
Q ss_pred HHHHHHHHHC----C----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHH
Q 042546 463 NEFMDHMEAS----G----------SDVGDKMW--VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYC 525 (671)
Q Consensus 463 ~~~~~~m~~~----g----------~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~ 525 (671)
.+++...... + -.|....| .-+-..|-..|+.++|++..++..+ ..|+ +..|..-...|-
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilK 239 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHH
Confidence 6777665432 1 13444334 5567778899999999999999987 3454 667888888999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------H----HHHHHh
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-------F----IKYVSK 594 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t-------~----~~~l~~ 594 (671)
+.|++++|.+.++....- -.-|...=+-.+..+.++|++++|.+++....+.+..|.... | ..+|.+
T Consensus 240 h~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEAREL--DLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HCCCHHHHHHHHHHHHhC--ChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998752 123444555667778899999999999999987776544321 1 456678
Q ss_pred cCChHHHHHHHHHhhh
Q 042546 595 SGTSDDAIAFLKGMTS 610 (671)
Q Consensus 595 ~g~~~~A~~~~~~m~~ 610 (671)
.|++..|++.|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 8999999888877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=0.0002 Score=72.50 Aligned_cols=160 Identities=11% Similarity=0.105 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHhCCCCCC
Q 042546 480 MWVSLIKGHCVA--GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH--------NCVREYDLKPW 549 (671)
Q Consensus 480 ~~~~li~~~~~~--g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~~p~ 549 (671)
.+.+++..+.+. .....+.+++...-+ ..-.-...+--+++......|+++.|.+++. .+.+ .+..|.
T Consensus 341 ~~~~ll~~~t~~~~~~~~ka~e~L~~~~~-~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~-~~~~P~ 418 (652)
T KOG2376|consen 341 LFPILLQEATKVREKKHKKAIELLLQFAD-GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE-AKHLPG 418 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhc-cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh-hccChh
Confidence 344444443322 235556666666544 2211224455556666778899999999888 5543 244554
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHH---HH---HH-HhcCChHHHHHHHHHhhhCCCCCHHHHH
Q 042546 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDH--GFPPFVDPF---IK---YV-SKSGTSDDAIAFLKGMTSKRFPSMSVVL 620 (671)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~t~---~~---~l-~~~g~~~~A~~~~~~m~~~~~p~~~~~~ 620 (671)
.+ .+++..+.+.++.+.|..++.+.... .-.+....+ +. .+ -+.|+.++|...++++.+..++|..+..
T Consensus 419 ~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 419 TV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLV 496 (652)
T ss_pred HH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHH
Confidence 44 55666677777766666666655421 001111222 11 11 3679999999999999998888999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHhchH
Q 042546 621 CLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 621 ~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.++.+|++. +.+.|..+-+.++.
T Consensus 497 ~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 497 QLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred HHHHHHHhc-CHHHHHHHhhcCCC
Confidence 999999876 68888888887654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-06 Score=88.83 Aligned_cols=246 Identities=16% Similarity=0.159 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH
Q 042546 302 SSYNAMASVLGREDCIDRFWKVLDEMRSK-----GY-EMEMET-CVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374 (671)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~t-~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 374 (671)
.+..-+...|...|+++.|..+++.-.+. |. .|...+ .+.+-..|...+++++|..+|+++...
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 45555889999999999999999887654 21 233332 334667788999999999999998731
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHH
Q 042546 375 TFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG-----GF-IASS-NMKS 447 (671)
Q Consensus 375 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~ 447 (671)
....+ | ...+--..+++.|-.+|.+.|++++|...++...+- |. .|.+ .-++
T Consensus 271 --~e~~~---G----------------~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 271 --REEVF---G----------------EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred --HHHhc---C----------------CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 11111 0 111111246777888899999999988888765431 11 1222 2355
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-CCC-CH
Q 042546 448 KIAFRLSSAGKKDEANEFMDHMEAS---GSDVG----DKMWVSLIKGHCVAGDLDKAADCFQKMVEKE----G-TSH-AG 514 (671)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----g-~~p-~~ 514 (671)
.+...|+..+++++|..+++...+. -+.++ ..+++.|-..|-+.|++++|.++|++..+.. | ..+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 6677778888888888888765421 11222 2457777777777888888877777765411 1 111 13
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVRE---YD-LKPW-HTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~-~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
..++-|-..|.+.++.++|.++|.+.... .| -.|+ ..+|..|...|.+.|++++|.++.+...
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 44566666777777777777777654321 11 1222 2366667777777777777777666553
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-09 Score=64.86 Aligned_cols=34 Identities=29% Similarity=0.285 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHH
Q 042546 158 ESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMK 191 (671)
Q Consensus 158 ~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~ 191 (671)
.|+.||++|||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999999984
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.9e-07 Score=83.85 Aligned_cols=225 Identities=10% Similarity=-0.006 Sum_probs=186.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHh
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW-VSLIKGHCV 490 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~~~ 490 (671)
+-+-++|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-..|.+..+++.|+.++.+-.+. .|-.+|| ..+...+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 66889999999999999999988766 577788999999999999999999999998876 5766765 456667778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (671)
.++.++|.++++...+. -..++....++...|.-.++.+.|++.+.++..- |+ -+...|+.+--+|.-.+++|-++
T Consensus 303 m~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhH
Confidence 89999999999999872 2346667777888889999999999999999874 54 35578888888888899999999
Q ss_pred HHHHHHHhCCCCCCHHH---H--HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 571 SLLCLMKDHGFPPFVDP---F--IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 571 ~l~~~m~~~~~~p~~~t---~--~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
--|++....--.|+... | .......|++..|.+.|+-....+....+.++.|.-.-.+.|+.++|..+++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99998876555555432 2 12225789999999999999888878889999999999999999999999987553
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.4e-09 Score=63.82 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 042546 296 FVKHDESSYNAMASVLGREDCIDRFWKVLDEM 327 (671)
Q Consensus 296 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 327 (671)
|+.||.+|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.9e-06 Score=82.62 Aligned_cols=215 Identities=12% Similarity=-0.028 Sum_probs=147.2
Q ss_pred cCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 421 VGRMGECNKILKAMEEGG-FIAS--SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
.+..+.+..-+.++.... ..|+ ...|..+...|.+.|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345667777777776432 2222 3457777778888999999999999888764 34567888899999999999999
Q ss_pred HHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 498 ADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
.+.|+...+ +.|+ ..+|..+..++...|++++|.+.|+..... .|+..........+...++.++|.+.+++.
T Consensus 118 ~~~~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 118 YEAFDSVLE---LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999876 3443 556777777888899999999999988763 444332222222234567899999999765
Q ss_pred HhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhhC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 577 KDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSK-------RFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 577 ~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
... ..|+...+.......|+..++ ..++.+... .+.....|..+...+.+.|++++|...|++...
T Consensus 192 ~~~-~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 192 YEK-LDKEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred Hhh-CCccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 533 233322222223345665544 345555432 112346899999999999999999999998654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.7e-05 Score=70.05 Aligned_cols=443 Identities=9% Similarity=0.012 Sum_probs=235.6
Q ss_pred CChHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 142 SSPDEARRFFNWVLEKESE-RLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 142 ~~~~~A~~~f~~m~~~~~~-~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.++.-|+.+++.-.....- .-++..| +-..+-+.|++++|+..+.-..+.. .|+...+..+-..+.-.|...+|..
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 5677777776655431000 0123333 4456677888888888888877654 4555556555555555666666654
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
+-. ..+..+. ...++..........+.+...-...+-.....+-..-+..++-++.+|.+++.++..+ .|+
T Consensus 113 ~~~---ka~k~pL---~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n~e 183 (557)
T KOG3785|consen 113 IAE---KAPKTPL---CIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD---NPE 183 (557)
T ss_pred HHh---hCCCChH---HHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---Chh
Confidence 322 1111111 1112222222222222221111111111111222222222235788999999998753 577
Q ss_pred HHHHHHHHH-HHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042546 301 ESSYNAMAS-VLGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLL 378 (671)
Q Consensus 301 ~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll 378 (671)
....|.-+. .|.+..-++-+.+++.--.+. -|| ...-|.......+.=+-..|.+-...+...+-.. |. .+
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~ 256 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-FI 256 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-hH
Confidence 777776554 456777778888888776654 344 3333333322222212222222233332221111 00 11
Q ss_pred HHHHhcCccc---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 379 RKIVVSKQLD---MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS 455 (671)
Q Consensus 379 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 455 (671)
.-+++.+..- -+.+.+++..+.+ +.| ..--.|+--|.+.+++.+|..+.+++. +.++.-|-.-.-.++.
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~--~IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMK--HIP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAA 328 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHh--hCh--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHH
Confidence 1111111000 0111122211111 111 122345556889999999999988775 3333333211112222
Q ss_pred cC-------CHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 042546 456 AG-------KKDEANEFMDHMEASGSDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527 (671)
Q Consensus 456 ~g-------~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 527 (671)
.| ...-|.+.|+..-+++..-|.+. -.++.+.+.-..++|+++-.++.+.. .-..-|...+| +..+++..
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~at 406 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLAT 406 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHh
Confidence 33 35677777777766665555433 44555666667788999988888877 55555555554 77889999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHhcCChHHHH
Q 042546 528 NRAIDACKFVHNCVREYDLKPWHTTYEELI-KNLLVQRGFKDALSLLCLMKDHGFPPFVDPFI----KYVSKSGTSDDAI 602 (671)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~----~~l~~~g~~~~A~ 602 (671)
|.+.+|+++|-.+... .+ .|..+|.+++ ++|.+++..+-|.+++-.+. -..+..+++ .-|-+++.+--|-
T Consensus 407 gny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaa 481 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAA 481 (557)
T ss_pred cChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887531 22 4566776655 67889999999988766553 233334443 3345788888888
Q ss_pred HHHHHhhhCCCCCHHHH
Q 042546 603 AFLKGMTSKRFPSMSVV 619 (671)
Q Consensus 603 ~~~~~m~~~~~p~~~~~ 619 (671)
+.|+.+...+ |+++.|
T Consensus 482 KAFd~lE~lD-P~pEnW 497 (557)
T KOG3785|consen 482 KAFDELEILD-PTPENW 497 (557)
T ss_pred HhhhHHHccC-CCcccc
Confidence 8888777654 344333
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00051 Score=71.85 Aligned_cols=357 Identities=10% Similarity=-0.002 Sum_probs=220.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hCCChHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL-GRFS-ERNMVKEAV 356 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li-~~~~-~~g~~~~a~ 356 (671)
|+++.+-+.|++.. .+.-.....|+.+-..|.-.|.-..|..++++-....-.|+..+--.++ ..|. +.+.+++++
T Consensus 337 g~f~~lae~fE~~~--~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegl 414 (799)
T KOG4162|consen 337 GQFEVLAEQFEQAL--PFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGL 414 (799)
T ss_pred HHHHHHHHHHHHHh--HhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHH
Confidence 89999999999876 3456677889999999999999999999998766553335433333333 3333 446777777
Q ss_pred HHHHHHHh--CCCCCCHHHHHHHHHHHHhc-----Ccc-c-----HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcC
Q 042546 357 DLYEFAMA--CKNKPSVNCCTFLLRKIVVS-----KQL-D-----MRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISVG 422 (671)
Q Consensus 357 ~l~~~m~~--~g~~p~~~~~~~ll~~~~~~-----~~~-~-----~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g 422 (671)
+.-.+... .+..-....-..++.+.+.+ ... + .....+.+++..+ .+..|+...|-++ -|+..+
T Consensus 415 dYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R 492 (799)
T KOG4162|consen 415 DYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQR 492 (799)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHH
Confidence 77776665 22211111111122222211 111 1 1223333444433 3344544444333 467788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC------------------CCHHHHHH
Q 042546 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS-GSD------------------VGDKMWVS 483 (671)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~------------------~~~~~~~~ 483 (671)
+++.|.+...+..+.+-.-+...|..|.-.+...+++.+|+.+.+...+. |.. --..|...
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 99999999999998765788899999999999999999999998876543 210 00122222
Q ss_pred HHHHHHhc------C-----------------CHHHHHHHHHHHHH-------cCC---------CC--CC------HHH
Q 042546 484 LIKGHCVA------G-----------------DLDKAADCFQKMVE-------KEG---------TS--HA------GYA 516 (671)
Q Consensus 484 li~~~~~~------g-----------------~~~~a~~~~~~m~~-------~~g---------~~--p~------~~~ 516 (671)
++..+-.. + +..++.+...++.. ..| .. |+ ...
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 22222200 0 00111111100000 011 11 11 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD----PFIKYV 592 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~----t~~~~l 592 (671)
|....+.+.+.+..++|...+.+...- .......|...-..+...|..++|.+.|..... +.|+.+ .+..++
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHH
Confidence 445566777888888888777777542 222333455444566678899999998887764 466654 445566
Q ss_pred HhcCChHHHHH--HHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 593 SKSGTSDDAIA--FLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 593 ~~~g~~~~A~~--~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
.+.|+-.-|.. ++..+.+.++.+...|-.+...+.+.|+.++|.+.|....
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 67787766666 9999999999999999999999999999999999988643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.8e-06 Score=79.00 Aligned_cols=229 Identities=12% Similarity=-0.008 Sum_probs=144.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042546 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS 384 (671)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~ 384 (671)
+-|-..|.+.|.+.+|.+.|..-.+. .|-+.||-.|-..|.+..+++.|+.+|.+-.+. .|-.+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~---------- 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTY---------- 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhh----------
Confidence 34566777777777777777766655 456667777777777777777777777765532 3333332
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464 (671)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 464 (671)
..-+...+-..++.++|.++++...+.. +.++.....+..+|.-.+++|-|+.
T Consensus 293 --------------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 293 --------------------------LLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred --------------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHH
Confidence 2223334445567777777777777654 4455666666777777778888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 465 FMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG--YAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+++++.+-|+ -+...|+.+--+|.-.+++|-++.-|.+... .--.|+. .+|-.|-......|++..|.+.|.-...
T Consensus 346 yYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 346 YYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 8888777775 3566677777777777777777777776655 3332332 2344444444556777777777766553
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 543 EYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 543 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
.-.-+...+|.|.-.-.+.|++++|..++.....
T Consensus 424 --~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 424 --SDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred --cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 1223445666665555667777777777666553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.6e-05 Score=75.55 Aligned_cols=304 Identities=12% Similarity=-0.052 Sum_probs=156.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHH-HHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHH-HHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGY-EMEMETC-VKVLGRFSERNMVKEAVDLYEFAMACKNKPSVN-CCTFL 377 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~-~~~~l 377 (671)
...|..+...+...|+.+++.+.+....+..- .++.... ......+...|++++|.+++++..+. .|+.. .+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~- 82 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL- 82 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-
Confidence 45667777777778888887777766554321 2232222 22233456788999999999988754 33322 1111
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 042546 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS-SNMKSKIAFRLSSA 456 (671)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~ 456 (671)
...+...+ ...+..+.+.+.+.. . ....|+ ......+...+...
T Consensus 83 ~~~~~~~~---------------------------------~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 83 HLGAFGLG---------------------------------DFSGMRDHVARVLPL-W-APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred hHHHHHhc---------------------------------ccccCchhHHHHHhc-c-CcCCCCcHHHHHHHHHHHHHc
Confidence 00111111 112333344444433 1 111222 23334445566667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHhcCCHHHHH
Q 042546 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG--YAIDLLVNTYCSKNRAIDAC 534 (671)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~--~~~~~li~~~~~~g~~~~A~ 534 (671)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.....|+. ..|..+...+...|+.++|.
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 77777777777776653 2334556666666777777777777777665511112222 23445666677777777777
Q ss_pred HHHHHHHHhCCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHhCCCCCC----H--HHHHHHHHhcCChHHHHH
Q 042546 535 KFVHNCVREYDLKPWHTTY-E--ELIKNLLVQRGFKDALSL--LCLMKDHGFPPF----V--DPFIKYVSKSGTSDDAIA 603 (671)
Q Consensus 535 ~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~l--~~~m~~~~~~p~----~--~t~~~~l~~~g~~~~A~~ 603 (671)
.++++........+..... + .++.-+...|..+.+.++ ......... |. . .....++...|+.++|..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHF-PDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhc-CcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 7777764321111111111 1 222222233332222222 111110000 11 0 123445567788888888
Q ss_pred HHHHhhhCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 604 FLKGMTSKRFP---------SMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 604 ~~~~m~~~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.++.+...... .........-++.+.|++++|.+.+.....
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88777652111 223333444566789999999999988654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-05 Score=76.89 Aligned_cols=202 Identities=13% Similarity=0.040 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..|..+-..|...|+.++|...|++..+.. +.+...|+.+...|...|++++|.+.|++..+.. +-+..+|..+...+
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 346677778899999999999999998865 4567899999999999999999999999998763 22467788888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
...|++++|.+.|+...+ ..|+..........+...++.++|...|.+.... ..|+...| .+. ....|+..+
T Consensus 143 ~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHH--HHHccCCCH
Confidence 999999999999999877 3344322222222344568899999999776542 33433222 222 233555554
Q ss_pred HHHHHHHHHhCC---C--CCCH-HH---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHH
Q 042546 569 ALSLLCLMKDHG---F--PPFV-DP---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC 621 (671)
Q Consensus 569 A~~l~~~m~~~~---~--~p~~-~t---~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 621 (671)
+ +.++.+.+.- . .|+. .. +...+.+.|++++|...|++.....+||..-+..
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4 3455544221 1 1111 11 2455678999999999999999988777665544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00041 Score=70.86 Aligned_cols=294 Identities=12% Similarity=0.001 Sum_probs=173.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDE-SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 356 (671)
.++.+++.+.+...........+. .........+...|++++|.+++++..+.. +.|...+.. ...+...|+...+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~ 96 (355)
T cd05804 19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMR 96 (355)
T ss_pred cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCc
Confidence 477888777777665433222232 222223445678899999999999988762 224444443 22333333332222
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLT-DAMLNSVLKALISVGRMGECNKILKAME 435 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 435 (671)
....+.... . ....|+ ......+...+...|++++|...+++..
T Consensus 97 ~~~~~~l~~-~----------------------------------~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 141 (355)
T cd05804 97 DHVARVLPL-W----------------------------------APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRAL 141 (355)
T ss_pred hhHHHHHhc-c----------------------------------CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222222211 0 111122 2234455567788999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C
Q 042546 436 EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVGD--KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT-S 511 (671)
Q Consensus 436 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~ 511 (671)
+.. +.+...+..+...|...|++++|...+++...... .|+. ..|..+...+...|+.++|..++++... ... .
T Consensus 142 ~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~-~~~~~ 219 (355)
T cd05804 142 ELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA-PSAES 219 (355)
T ss_pred hhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-cccCC
Confidence 875 45667888889999999999999999998876532 2332 3455778889999999999999999865 222 2
Q ss_pred CCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--
Q 042546 512 HAGYAI-D--LLVNTYCSKNRAIDACKF--VHNCVREYD-LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP-- 583 (671)
Q Consensus 512 p~~~~~-~--~li~~~~~~g~~~~A~~~--~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-- 583 (671)
+..... + .++.-+...|..+.+.+. ......... .............++...|+.++|.++++.+......+
T Consensus 220 ~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 299 (355)
T cd05804 220 DPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADD 299 (355)
T ss_pred ChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCc
Confidence 222211 1 333334445544443333 222211100 01111222245666778999999999999887533221
Q ss_pred C-----HH--HHHH--HHHhcCChHHHHHHHHHhhh
Q 042546 584 F-----VD--PFIK--YVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 584 ~-----~~--t~~~--~l~~~g~~~~A~~~~~~m~~ 610 (671)
. .. .++. .+...|+.++|.+.+.....
T Consensus 300 ~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 300 NKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 11 1122 23588999999999887664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00039 Score=70.11 Aligned_cols=265 Identities=11% Similarity=0.035 Sum_probs=190.4
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 357 (671)
+.++.+..++++.+.+.. +++...+..=|..+...|+..+-..+=.+|.+. .+-...+|-++---|.-.|+..+|++
T Consensus 257 ~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred cChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHH
Confidence 478999999999987644 556666777788999999988888888888876 23358899999998988999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437 (671)
Q Consensus 358 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (671)
.|.+.... .|.- ...|-..-..|+-.|.-|+|...+...-+.
T Consensus 334 y~SKat~l--D~~f------------------------------------gpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 334 YFSKATTL--DPTF------------------------------------GPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred HHHHHhhc--Cccc------------------------------------cHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 99886521 1110 023666777778888888888777665542
Q ss_pred --C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC--
Q 042546 438 --G-FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEK-EGTS-- 511 (671)
Q Consensus 438 --g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~g~~-- 511 (671)
| ..|. .| +---|.+.++.+.|.+.|.+..... +.|+...+-+--..-+.+.+.+|..+|+..... ..+.
T Consensus 376 ~~G~hlP~--LY--lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 376 MPGCHLPS--LY--LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred ccCCcchH--HH--HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc
Confidence 2 1222 22 2234667888899999988877543 446677777776677788888888888877630 0111
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 512 --HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFI 589 (671)
Q Consensus 512 --p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~ 589 (671)
--..+++.|-.+|.+++..++|...|+..... .+-+..+|.++--.|...|+++.|.+.|.+.. .+.|+..+..
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~ 526 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFIS 526 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHH
Confidence 12345677778888999999999999888763 44567788888878888999999999988876 4678875554
Q ss_pred HHH
Q 042546 590 KYV 592 (671)
Q Consensus 590 ~~l 592 (671)
..+
T Consensus 527 ~lL 529 (611)
T KOG1173|consen 527 ELL 529 (611)
T ss_pred HHH
Confidence 444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.0016 Score=68.37 Aligned_cols=362 Identities=13% Similarity=0.062 Sum_probs=229.4
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376 (671)
Q Consensus 297 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 376 (671)
+..|...|..+--+..++|+++.+-+.|++....- --....|+.+-..|...|.-..|..+++.-....-.|+..+--.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 35788999999999999999999999999987542 23567899999999999999999999998765443455444434
Q ss_pred HHHHHHhcCccc----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCC-CC
Q 042546 377 LLRKIVVSKQLD----MRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG-----------RMGECNKILKAMEEGG-FI 440 (671)
Q Consensus 377 ll~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g-~~ 440 (671)
+....|-..-.. .+-+.+++.......-......|-.+--+|...- ...++.+.+++..+.+ -.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 443333222111 2344455543322222233344555555554321 2356777777777654 33
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------
Q 042546 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH-------- 512 (671)
Q Consensus 441 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-------- 512 (671)
|+...|-++ -|+-.++++.|.+...+..+-+-.-+...|.-+.-.+.-.+++.+|+.+.+...+..|..-
T Consensus 478 p~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 444444443 4667889999999999999886678899999999999999999999999988766344310
Q ss_pred ----------CHHHHHHHHHHHHh---------cC--------------CHHHHHHHHHHHH----H------------h
Q 042546 513 ----------AGYAIDLLVNTYCS---------KN--------------RAIDACKFVHNCV----R------------E 543 (671)
Q Consensus 513 ----------~~~~~~~li~~~~~---------~g--------------~~~~A~~~~~~m~----~------------~ 543 (671)
-..|...++..+-. .| +..+|.+....+. . +
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 01122222222110 00 1111111111000 0 0
Q ss_pred CCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHH--HHhcCChHHHHHHHHHhhhC
Q 042546 544 YDLK--PW------HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV--DPFIKY--VSKSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 544 ~~~~--p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~t~~~~--l~~~g~~~~A~~~~~~m~~~ 611 (671)
.... |+ ...|......+.+.++.++|...+.+... +.|-. ..+..+ +-..|..++|.+.|......
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 0011 11 11444555566667777777766666653 33332 223333 34678899999999988888
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHH--HHHhchHhhhccHHHHHHHHhh-hcCC
Q 042546 612 RFPSMSVVLCLFAAFFQARRHSEAQD--LLSKCPRYVRNHADVLNLLYSK-KSGG 663 (671)
Q Consensus 612 ~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~l~~~m-~~~g 663 (671)
+|.++..-.++..++.+.|+..-|.. ++..+.+.....+++|..+.++ +..|
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 77788888999999999998887777 8888888777788887766665 3444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0017 Score=68.31 Aligned_cols=372 Identities=15% Similarity=0.102 Sum_probs=192.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-CC--------CCCHHHHHHHHHHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK-GY--------GVASHVRNKMTEKFEK 211 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~-g~--------~p~~~t~~~ll~~~~~ 211 (671)
.|+++.|.+-.+.++ +-..|..|-+.|.+..+.+-|.-.+-.|... |. .|+ .+=..+--.-..
T Consensus 741 iG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 599999998888774 4468999999999999999998888888543 21 111 111112222234
Q ss_pred cCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHH
Q 042546 212 EGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA 291 (671)
Q Consensus 212 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~ 291 (671)
.|..++|..+.+--++. ++++.+... .|.+++|.++-+.-
T Consensus 813 LgMlEeA~~lYr~ckR~---------------------------------------DLlNKlyQs-~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRY---------------------------------------DLLNKLYQS-QGMWSEAFEIAETK 852 (1416)
T ss_pred HhhHHHHHHHHHHHHHH---------------------------------------HHHHHHHHh-cccHHHHHHHHhhc
Confidence 55555555443322211 122222211 14555555444321
Q ss_pred HHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC-------------------CCCCHHHHHHHHHHHHhCCCh
Q 042546 292 EESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKG-------------------YEMEMETCVKVLGRFSERNMV 352 (671)
Q Consensus 292 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------------~~p~~~t~~~li~~~~~~g~~ 352 (671)
.+ -.=..||..-..-+-..++.+.|++.|++-.... -..|...|.---...-..|+.
T Consensus 853 DR----iHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 853 DR----IHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEM 928 (1416)
T ss_pred cc----eehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccch
Confidence 10 0111233333333344445555555444321100 001223333333333344555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 353 KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILK 432 (671)
Q Consensus 353 ~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (671)
+.|+.+|...+. |-+++...|-.|+.++|-++-+
T Consensus 929 daAl~~Y~~A~D----------------------------------------------~fs~VrI~C~qGk~~kAa~iA~ 962 (1416)
T KOG3617|consen 929 DAALSFYSSAKD----------------------------------------------YFSMVRIKCIQGKTDKAARIAE 962 (1416)
T ss_pred HHHHHHHHHhhh----------------------------------------------hhhheeeEeeccCchHHHHHHH
Confidence 555555555432 6667777777888888887766
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---------------cCCHHHH
Q 042546 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV---------------AGDLDKA 497 (671)
Q Consensus 433 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~---------------~g~~~~a 497 (671)
+ .-|....-.|...|-..|++.+|...|-+.+. |...|+.|-. ..+.-.|
T Consensus 963 e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 963 E------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred h------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 5 34666666788888888888888888876542 2223332222 2223333
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH---------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH---------NCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~---------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
-..|++. |.. +.--+..|-+.|.+.+|+++-- -+.+...-..|....+.-.+-++.+.++++
T Consensus 1028 ArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyek 1098 (1416)
T KOG3617|consen 1028 ARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEK 1098 (1416)
T ss_pred HHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHH
Confidence 4444432 211 2223445777777777766532 122221223345555555555666777788
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhh-C-CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 569 ALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTS-K-RFPSM----SVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 569 A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~-~-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
|..++-..++. .-.-.+|+..++.--.++-+.|.. + +.|+. .....+.+.|.++|.+..|-+=|-+
T Consensus 1099 AV~lL~~ar~~-------~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1099 AVNLLCLAREF-------SGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHH-------HHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 77776655431 011223444444444444444443 2 22332 3355566677777777766665554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=7e-05 Score=66.81 Aligned_cols=197 Identities=11% Similarity=0.069 Sum_probs=142.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
..-|--.|...|+...|.+-+++..+.. +.+..+|..+...|-+.|..+.|.+-|++..... +-+-...|..-.-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4556678889999999999999888776 4566788888999999999999999999887763 2344556777777788
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (671)
.|++++|.+.|++........--..+|..+.-+-.+.|+.+.|.+.|.+-.+.. .-...+.-.+.......|++-.|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHH
Confidence 889999999998887722222234466666667778889999998888877631 122345566777777888888888
Q ss_pred HHHHHHHhCCCCCCHHHHH---HHHHhcCChHHHHHHHHHhhhCC
Q 042546 571 SLLCLMKDHGFPPFVDPFI---KYVSKSGTSDDAIAFLKGMTSKR 612 (671)
Q Consensus 571 ~l~~~m~~~~~~p~~~t~~---~~l~~~g~~~~A~~~~~~m~~~~ 612 (671)
..++.....+. ++..++. ..=...|+.+.+-++=..+.+..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88888776655 6666663 22346777777776655555543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-05 Score=87.18 Aligned_cols=199 Identities=13% Similarity=0.100 Sum_probs=156.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS-GS---DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGY 515 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~ 515 (671)
+-+...|-..|.-..+.++.++|.+++++.... ++ .--...|.++++.-..-|.-+...++|++..+ . + -...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq-y-c-d~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ-Y-C-DAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-h-c-chHH
Confidence 344567888888888899999999999888642 11 11134677888777777888888999999876 2 2 2344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHH-
Q 042546 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF--VDPFIKYV- 592 (671)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~t~~~~l- 592 (671)
.|..|...|.+.+..++|.++++.|.++++ -....|...++.+.++.+-+.|.+++.+..+. -|- ..-+++-+
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence 688899999999999999999999998766 45678899999999999989999999988764 444 34444444
Q ss_pred ---HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 593 ---SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 593 ---~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
.++|+.+.+..+|+......|.....|+..++.=.++|+.+.+..+|++....
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 58899999999999998888778889999999999999999999999986653
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00032 Score=72.42 Aligned_cols=256 Identities=14% Similarity=0.130 Sum_probs=128.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
..+.+|+.+.+.++.+ ..-.--|..+.+-|+..|+++.|.++|.+-- .++-.|..|.+.|+|+.|.++
T Consensus 746 kew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHH
Confidence 5666777777766642 2223346666677777777777777776532 345667777777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
-.+... ..... ..|-+-..-+-+.|++.+|.+++-.+.
T Consensus 814 a~e~~~--~e~t~-------------------------------------~~yiakaedldehgkf~eaeqlyiti~--- 851 (1636)
T KOG3616|consen 814 AEECHG--PEATI-------------------------------------SLYIAKAEDLDEHGKFAEAEQLYITIG--- 851 (1636)
T ss_pred HHHhcC--chhHH-------------------------------------HHHHHhHHhHHhhcchhhhhheeEEcc---
Confidence 665431 11111 222222233344555556655554443
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 042546 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518 (671)
Q Consensus 439 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 518 (671)
.|+. .|.+|-+.|..++.+++.++-.-. .-..|-.-+..-|-..|++..|..-|-+..+ |.
T Consensus 852 -~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~k 912 (1636)
T KOG3616|consen 852 -EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FK 912 (1636)
T ss_pred -CchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HH
Confidence 3432 355566666666655555443211 0112233344444555565555555544332 44
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HH-------------------HHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPW---HT-------------------TYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~-------------------~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
+-+++|-..+.+++|.++-..- .|-... .. ....-|+--+..+-++-|.++-+-.
T Consensus 913 aavnmyk~s~lw~dayriakte---gg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~ 989 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAKTE---GGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIA 989 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHhcc---ccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHh
Confidence 4555555555555555443321 010000 00 1111222233445555555555444
Q ss_pred HhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhh
Q 042546 577 KDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 577 ~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
.+.....-..-+...+...|++++|-+-+-+.++
T Consensus 990 ~k~k~~~vhlk~a~~ledegk~edaskhyveaik 1023 (1636)
T KOG3616|consen 990 AKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIK 1023 (1636)
T ss_pred hhccCccchhHHhhhhhhccchhhhhHhhHHHhh
Confidence 4333222223345555778999988776665554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-06 Score=82.79 Aligned_cols=222 Identities=16% Similarity=0.131 Sum_probs=125.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV-GDKMWVSLIKGHCVA 491 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~ 491 (671)
-+.++|...|+.+.+. .++.... .|.......+...+...++-+.+..-+++.......+ +..........+...
T Consensus 40 ~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~ 115 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHE 115 (290)
T ss_dssp HHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHc
Confidence 3456666677655433 3333333 5665555544444433344445554444433332222 222222233445667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 042546 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV----QRGFK 567 (671)
Q Consensus 492 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~ 567 (671)
|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++.. .+.+.
T Consensus 116 ~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 116 GDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp CHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCchhHH
Confidence 8888887776532 3556667777888888888888888888864 33443 33334444333 33578
Q ss_pred HHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHhch
Q 042546 568 DALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRH-SEAQDLLSKCP 643 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~ 643 (671)
+|..+|+++.+. ..++..++ ..+....|++++|++++++.....+.+..+...++-+....|+. +.+.+++.++.
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 888888887654 44444433 22334678888888888887777666777777777777777877 66777888877
Q ss_pred HhhhccH
Q 042546 644 RYVRNHA 650 (671)
Q Consensus 644 ~~~~~~~ 650 (671)
...+.++
T Consensus 264 ~~~p~h~ 270 (290)
T PF04733_consen 264 QSNPNHP 270 (290)
T ss_dssp HHTTTSH
T ss_pred HhCCCCh
Confidence 6544333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00011 Score=65.66 Aligned_cols=198 Identities=14% Similarity=0.098 Sum_probs=158.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHH
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLVNT 523 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~ 523 (671)
+...|.-+|...|+...|..-+++..+.. +.+.-+|..+-..|.+.|+.+.|.+-|++..+ +.| +..+.|..-.-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 44557778999999999999999999874 34567899999999999999999999999976 333 34455555566
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHhcCChHHH
Q 042546 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF--PPFVDPFIKYVSKSGTSDDA 601 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~t~~~~l~~~g~~~~A 601 (671)
+|..|++++|...|+.........--..+|.-+.-+..+.|+.+.|.+.|++..+... .|.........-+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 7889999999999999887533333446787777777889999999999999886532 23334456667789999999
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh
Q 042546 602 IAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 602 ~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
..+++....++.++.......|..-.+.|+.+.|-++=.+.....
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999998877999998888999999999998887766655433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00011 Score=76.84 Aligned_cols=280 Identities=15% Similarity=0.129 Sum_probs=164.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-C--------CCCCHHHHHHHHHHHHhC
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK-G--------YEMEMETCVKVLGRFSER 349 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~~t~~~li~~~~~~ 349 (671)
|++|.|.+-.+.++ +-..|..|.+.|.+..++|-|.-.+..|... | -.|+ .+=..+.......
T Consensus 742 G~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred ccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 89999988777665 4478999999999999999998888887642 1 1232 2222333334577
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429 (671)
Q Consensus 350 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (671)
|.+++|+.+|++-++. ..|=..|-..|.+++|.+
T Consensus 814 gMlEeA~~lYr~ckR~----------------------------------------------DLlNKlyQs~g~w~eA~e 847 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKRY----------------------------------------------DLLNKLYQSQGMWSEAFE 847 (1416)
T ss_pred hhHHHHHHHHHHHHHH----------------------------------------------HHHHHHHHhcccHHHHHH
Confidence 8899999999887652 222223334444555544
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHHh
Q 042546 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM----------EASG---------SDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 430 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~g---------~~~~~~~~~~li~~~~~ 490 (671)
+-+.=.+-.+ ..||.....-+-..++.+.|++.|++. .... -..|...|..--...-.
T Consensus 848 iAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES 924 (1416)
T KOG3617|consen 848 IAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES 924 (1416)
T ss_pred HHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc
Confidence 4332221111 122333333333344444444444321 1100 02244555555556667
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (671)
.|+.|.|+.+|...+. |-+++...|-.|+.++|-++-++-. |......|.+.|-..|++.+|.
T Consensus 925 ~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~esg-------d~AAcYhlaR~YEn~g~v~~Av 987 (1416)
T KOG3617|consen 925 VGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEESG-------DKAACYHLARMYENDGDVVKAV 987 (1416)
T ss_pred ccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHhcc-------cHHHHHHHHHHhhhhHHHHHHH
Confidence 8899999999988766 6678888888999999988776543 4456667888899999999999
Q ss_pred HHHHHHHhCC--C----CCCH-HHH--HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 571 SLLCLMKDHG--F----PPFV-DPF--IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 571 ~l~~~m~~~~--~----~p~~-~t~--~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
.+|.+.+.-. + +.|. .-+ +...+...+.-.|-++|++..- -...-+..|.|+|.+.+|+++-
T Consensus 988 ~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~-------~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 988 KFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG-------YAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch-------hhhHHHHHHHhhcchHHHHHHH
Confidence 9998775210 0 0000 111 1111223333445555554321 1123355678888888877654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.0019 Score=65.67 Aligned_cols=378 Identities=12% Similarity=0.059 Sum_probs=197.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCChhHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYG-VASHVRNKMTEKFEKEGLESDLE 219 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~~~ 219 (671)
.+.+++|+...+.... -|..+-..=-..+-+.|++++|+++|+.+.+.+.. -|...-..++.+-...
T Consensus 92 lnk~Dealk~~~~~~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l------- 159 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL------- 159 (652)
T ss_pred cccHHHHHHHHhcccc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------
Confidence 4788888888875444 33334444456677888888888888888776432 1222222333222211
Q ss_pred HHHHHHHcCCC--CChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHH----
Q 042546 220 KLKGIFATGSI--DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEE---- 293 (671)
Q Consensus 220 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~---- 293 (671)
.+. +....+. .+.........|.+... |++.+|++++....+
T Consensus 160 ~~~-~~q~v~~v~e~syel~yN~Ac~~i~~-------------------------------gky~qA~elL~kA~~~~~e 207 (652)
T KOG2376|consen 160 QVQ-LLQSVPEVPEDSYELLYNTACILIEN-------------------------------GKYNQAIELLEKALRICRE 207 (652)
T ss_pred hHH-HHHhccCCCcchHHHHHHHHHHHHhc-------------------------------ccHHHHHHHHHHHHHHHHH
Confidence 010 1111111 12222333333333333 677777777665510
Q ss_pred ---cC-----CCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhCCChH-HHHHHH
Q 042546 294 ---SG-----FVKHDES-SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMET----CVKVLGRFSERNMVK-EAVDLY 359 (671)
Q Consensus 294 ---~~-----~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~li~~~~~~g~~~-~a~~l~ 359 (671)
+. +++-+.. .---|.-++-..|+-++|..++....++. .+|... -|.++..-....-++ .++..+
T Consensus 208 ~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k 286 (652)
T KOG2376|consen 208 KLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSK 286 (652)
T ss_pred hhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHH
Confidence 00 0011111 11223455678899999999999988875 345422 233332221111111 122222
Q ss_pred HHHHhC-----------CCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhc--CCHH
Q 042546 360 EFAMAC-----------KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISV--GRMG 425 (671)
Q Consensus 360 ~~m~~~-----------g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~--g~~~ 425 (671)
+..... .-+-...--+.++..+...+. ++-+.... .+..|. ..+.+++..+.+. ....
T Consensus 287 ~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~-------q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ 358 (652)
T KOG2376|consen 287 KSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMD-------QVRELSASLPGMSPE-SLFPILLQEATKVREKKHK 358 (652)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHh
Confidence 222110 000001111223333322111 11111111 122232 3444454443332 2366
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMD--------HMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
+|.+++....+..-.-..++--.++......|+++.|.+++. .+.+.+..|- +..++...+.+.++-+.|
T Consensus 359 ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a 436 (652)
T KOG2376|consen 359 KAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSA 436 (652)
T ss_pred hhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccH
Confidence 777777766654322234566667777888999999999999 5555555554 445566667777777777
Q ss_pred HHHHHHHHHcC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 498 ADCFQKMVEKE-GTSHAGY----AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSL 572 (671)
Q Consensus 498 ~~~~~~m~~~~-g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l 572 (671)
.+++.+..... .-.+... ++.-+..--.+.|+.++|..+++++.+. ..+|..+...++.+|++.. .+.|..+
T Consensus 437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 77776665410 0111112 2333333334679999999999999874 4678889999999998764 7888887
Q ss_pred HHHH
Q 042546 573 LCLM 576 (671)
Q Consensus 573 ~~~m 576 (671)
-+.+
T Consensus 514 ~k~L 517 (652)
T KOG2376|consen 514 SKKL 517 (652)
T ss_pred hhcC
Confidence 7655
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-05 Score=77.40 Aligned_cols=147 Identities=16% Similarity=0.084 Sum_probs=62.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCC
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV----AGD 493 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~ 493 (671)
+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+. ..|.. ..-+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchh
Confidence 34455555555554321 23344444555555555555555555555543 12222 2222222211 224
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHH
Q 042546 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF-KDALSL 572 (671)
Q Consensus 494 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l 572 (671)
+.+|..+|+++.+ ...++..+.+.+..+....|++++|.+++.+...+ -.-+..+...++......|+. +.+.+.
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 5555555555443 23344445555555555555555555555554332 111223333344444444444 334444
Q ss_pred HHHHH
Q 042546 573 LCLMK 577 (671)
Q Consensus 573 ~~~m~ 577 (671)
+.+++
T Consensus 259 l~qL~ 263 (290)
T PF04733_consen 259 LSQLK 263 (290)
T ss_dssp HHHCH
T ss_pred HHHHH
Confidence 44444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.3e-07 Score=56.86 Aligned_cols=35 Identities=26% Similarity=0.281 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCH
Q 042546 165 KTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVAS 199 (671)
Q Consensus 165 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 199 (671)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0078 Score=65.03 Aligned_cols=244 Identities=14% Similarity=0.088 Sum_probs=120.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
+-.++|..+|+.. ..+....+.||.- -+.+|.|.++-++.. ....|+.+..+-.+.|.+.+|.+-
T Consensus 1062 ~LyEEAF~ifkkf------~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKF------DMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hHHHHHHHHHHHh------cccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHH
Confidence 4567777777653 3455666666653 355666666655433 345777888777777777777776
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
|-+.- |...|.-+++...+.|..+ ...+.+...++..-.|.. =+.||-+|++.+++.+-++...
T Consensus 1127 yikad------Dps~y~eVi~~a~~~~~~e--dLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~------ 1190 (1666)
T KOG0985|consen 1127 YIKAD------DPSNYLEVIDVASRTGKYE--DLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA------ 1190 (1666)
T ss_pred HHhcC------CcHHHHHHHHHHHhcCcHH--HHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc------
Confidence 65432 3333444444444444322 111111111122222211 2345555555555544443332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 042546 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518 (671)
Q Consensus 439 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 518 (671)
-||......+-+-|...|.++.|.-+|.. +.-|..+...+...|++..|...-++. .+..||-
T Consensus 1191 -gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK 1253 (1666)
T KOG0985|consen 1191 -GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWK 1253 (1666)
T ss_pred -CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHH
Confidence 35555555555555555555555554432 222445555555555555554433332 1334555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
-+-.+|...+.+.-| +|.. ..+.....-...++.-|-..|.+++.+.+++.-
T Consensus 1254 ~VcfaCvd~~EFrlA-----QiCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLA-----QICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred HHHHHHhchhhhhHH-----HhcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 555555544443332 1211 112223334445666666666666666665543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0048 Score=62.15 Aligned_cols=146 Identities=10% Similarity=0.027 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 494 LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRGFKDALSL 572 (671)
Q Consensus 494 ~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l 572 (671)
.+...+.+++......+.|+. +|...++.-.+..-+..|..+|.+..+. +..+ ++..+++++.-|| .++.+-|.++
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrI 423 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRI 423 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHH
Confidence 555666777776645566665 7788888888889999999999999875 5555 7778888888666 5677999999
Q ss_pred HHHHHhCCCCCCHH----HHHHHHHhcCChHHHHHHHHHhhhCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 573 LCLMKDHGFPPFVD----PFIKYVSKSGTSDDAIAFLKGMTSKR-FP--SMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 573 ~~~m~~~~~~p~~~----t~~~~l~~~g~~~~A~~~~~~m~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
|+.-.++ .+|.. .|++.|.+.++-..|..+|++..... ++ ....|..+++-=..-|+++.+.++-+++-.
T Consensus 424 FeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 424 FELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9965432 34443 34677789999999999999998863 23 457899999988999999999998888764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0015 Score=75.87 Aligned_cols=334 Identities=12% Similarity=0.016 Sum_probs=194.1
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCC--C----CCCHHHHHHHHHHHHhc
Q 042546 311 LGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACK--N----KPSVNCCTFLLRKIVVS 384 (671)
Q Consensus 311 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g--~----~p~~~~~~~ll~~~~~~ 384 (671)
....|+++.+...++.+.......+..........+...|++++|..++......- . .|....-...+.+....
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 44557777777776665322111122222334445567788899888888765321 1 11111111112222222
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHh
Q 042546 385 KQLDMRLFSKVVRVFRENGNVLTD----AMLNSVLKALISVGRMGECNKILKAMEEGGF---IAS--SNMKSKIAFRLSS 455 (671)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~li~~~~~ 455 (671)
...+.+.+....+.....-...+. ...+.+...+...|++++|...+.+.....- .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 222334444445444332111111 2445566677889999999999988764210 111 2345566677888
Q ss_pred cCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC--CHHHHHHHHHHHH
Q 042546 456 AGKKDEANEFMDHMEA----SGSD--V-GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-GTSH--AGYAIDLLVNTYC 525 (671)
Q Consensus 456 ~g~~~~A~~~~~~m~~----~g~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-g~~p--~~~~~~~li~~~~ 525 (671)
.|++++|...+++... .|.. + ....+..+...+...|++++|...+++..... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999999887654 2211 1 22334455566777899999999988875410 1112 2333444556778
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHh
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPWHTTYE-----ELIKNLLVQRGFKDALSLLCLMKDHGFPPFV------DPFIKYVSK 594 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~------~t~~~~l~~ 594 (671)
..|+.++|.+.+...............+. ..+..+...|+.+.|.+++............ ..+...+..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 89999999999888754211111111111 1223445588999999998775532211111 123445678
Q ss_pred cCChHHHHHHHHHhhhC----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 595 SGTSDDAIAFLKGMTSK----RFP--SMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 595 ~g~~~~A~~~~~~m~~~----~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.|+.++|...+++.... +.+ ...+...+..+|.+.|+.++|.+.+.+..+
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999887652 221 234567778889999999999999988654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0028 Score=58.81 Aligned_cols=308 Identities=8% Similarity=-0.013 Sum_probs=179.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCChhHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKM-TEKFEKEGLESDLE 219 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~~~ 219 (671)
..++.+|.++...-.++.+ ++....+.+-..|-...++..|-..++++... .|...-|.-- -..+-+.+.+.++.
T Consensus 23 d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHH
Confidence 4788999998888776332 46677778888899999999999999999766 3443333211 12333455666776
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 042546 220 KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299 (671)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~ 299 (671)
++..++..- ..++....+ +...++...+++..+..+.++... +.
T Consensus 99 rV~~~~~D~-----------------------~~L~~~~lq---------LqaAIkYse~Dl~g~rsLveQlp~----en 142 (459)
T KOG4340|consen 99 RVAFLLLDN-----------------------PALHSRVLQ---------LQAAIKYSEGDLPGSRSLVEQLPS----EN 142 (459)
T ss_pred HHHHHhcCC-----------------------HHHHHHHHH---------HHHHHhcccccCcchHHHHHhccC----CC
Confidence 665544321 111111111 111222223677777777776653 34
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH----H
Q 042546 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC----T 375 (671)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~----~ 375 (671)
+..+.+..-....+.|+++.|++-|....+-+---....||..+..| +.|+.+.|++...++.++|++.....- .
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~t 221 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTT 221 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCcccee
Confidence 55666666667789999999999999888764334566888777655 678999999999999988875432110 0
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 042546 376 FLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG-GFIASSNMKSKIAFRLS 454 (671)
Q Consensus 376 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~ 454 (671)
-.+++-. .|+. ..... +++ +..+|.-...+.+.|+++.|.+-+-.|.-+ ....|++|...+.-.=
T Consensus 222 egiDvrs-vgNt-~~lh~--------Sal---~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n- 287 (459)
T KOG4340|consen 222 EGIDVRS-VGNT-LVLHQ--------SAL---VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN- 287 (459)
T ss_pred ccCchhc-ccch-HHHHH--------HHH---HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-
Confidence 0000000 0000 00000 000 012333334456778888888877777632 2345566654432211
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504 (671)
Q Consensus 455 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 504 (671)
-.+++.+..+-+.-+.+... -...||..++-.||++.-++-|-.++.+-
T Consensus 288 ~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 288 MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 23445555555555555443 33567777777888888777777776653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00062 Score=75.62 Aligned_cols=213 Identities=10% Similarity=0.028 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042546 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414 (671)
Q Consensus 335 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (671)
....|-.-|....+.++.++|++++++.+.. +.+. +.+. -..+|.++
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~R-----------------EeeE---------------KLNiWiA~ 1503 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFR-----------------EEEE---------------KLNIWIAY 1503 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcc-----------------hhHH---------------HHHHHHHH
Confidence 4678888888899999999999999988742 1110 0000 01247777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (671)
++.-..-|.-+...++|++..+.. -....|..|...|.+.+..++|-++++.|.+.- .-....|...+..+.+..+-
T Consensus 1504 lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1504 LNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEA 1580 (1710)
T ss_pred HhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHH
Confidence 777777788888999999998742 234578889999999999999999999998653 34677899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 574 (671)
+.|..++.+..+...-.-......-.+..-.++|+.+.+..+|+..... .+-....|+..|+.-.++|+.+.+..+|+
T Consensus 1581 ~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1581 EAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred HHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999998761111113444555666677899999999999998863 34456789999999999999999999999
Q ss_pred HHHhCCCCCCH
Q 042546 575 LMKDHGFPPFV 585 (671)
Q Consensus 575 ~m~~~~~~p~~ 585 (671)
+....++.|-.
T Consensus 1659 Rvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1659 RVIELKLSIKK 1669 (1710)
T ss_pred HHHhcCCChhH
Confidence 99998887643
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.011 Score=63.94 Aligned_cols=463 Identities=13% Similarity=0.121 Sum_probs=239.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-C----------CCCCHHHHHHHHHHHHH
Q 042546 143 SPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK-G----------YGVASHVRNKMTEKFEK 211 (671)
Q Consensus 143 ~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~-g----------~~p~~~t~~~ll~~~~~ 211 (671)
.++++...+..|.. .+++-|....-.+-+-|..+=-.+..+++|+....- | +.-|+...-.-|.|.++
T Consensus 658 sve~s~eclkaml~-~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~k 736 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLS-ANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACK 736 (1666)
T ss_pred CHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHh
Confidence 56666666666665 444455555555555555555555666666665432 2 34455555566777777
Q ss_pred cCChhHHHHHHH------------HHHcCCCCCh---------HHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHH
Q 042546 212 EGLESDLEKLKG------------IFATGSIDNS---------IEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLV 270 (671)
Q Consensus 212 ~g~~~~~~~~~~------------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (671)
.|+..+.+++.+ .+.+....+. ...+..++..+++ ....+-|..++.+.+..-.+..+
T Consensus 737 t~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyr-nn~~kyIE~yVQkvNps~~p~Vv 815 (1666)
T KOG0985|consen 737 TGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYR-NNLQKYIEIYVQKVNPSRTPQVV 815 (1666)
T ss_pred hccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHH-hhHHHHHHHHHhhcCCcccchhh
Confidence 777766554322 2222111110 1111122222222 22233344444444443334444
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 042546 271 KFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN 350 (671)
Q Consensus 271 ~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 350 (671)
..++.. ...++..+-+-... .| .+.-+-|+.-.-+.+++.--...++...+.|.. |..|+|+|...|...+
T Consensus 816 G~LLD~--dC~E~~ik~Li~~v--~g----q~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSN 886 (1666)
T KOG0985|consen 816 GALLDV--DCSEDFIKNLILSV--RG----QFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSN 886 (1666)
T ss_pred hhhhcC--CCcHHHHHHHHHHH--hc----cCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCC
Confidence 433333 22222222111111 01 111223344444555555566666666666654 6777777766665543
Q ss_pred ChHHHH----------HHHHHHHhC-----------CC--------CCCHHHHHHHHHHHHhcCcccH---------HHH
Q 042546 351 MVKEAV----------DLYEFAMAC-----------KN--------KPSVNCCTFLLRKIVVSKQLDM---------RLF 392 (671)
Q Consensus 351 ~~~~a~----------~l~~~m~~~-----------g~--------~p~~~~~~~ll~~~~~~~~~~~---------~~~ 392 (671)
+-.+-. -+=....++ |. --....|...-+-+.+..+++. ..-
T Consensus 887 NnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~r 966 (1666)
T KOG0985|consen 887 NNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYR 966 (1666)
T ss_pred CChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHH
Confidence 322110 000000000 00 0001112222222222222221 011
Q ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHH------------------
Q 042546 393 SKVVRVFRENGN--VLTDAMLNSVLKALISVGRMGECNKILKAMEEGG--FIASSNMKSKIA------------------ 450 (671)
Q Consensus 393 ~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li------------------ 450 (671)
+++++.....++ ..|+.-.+.-+.++...+-..+-.++++++.-.. +.-+...-|.||
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRL 1046 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHh
Confidence 223333333332 2355566777888888888888888888876321 111111112222
Q ss_pred ---------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 451 ---------FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 451 ---------~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
.....++-+|+|..+|++.. .+....+.+|. ..+..+.|.+.-++.. ....|+.+.
T Consensus 1047 dnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-------~p~vWsqla 1111 (1666)
T KOG0985|consen 1047 DNYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-------EPAVWSQLA 1111 (1666)
T ss_pred ccCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-------ChHHHHHHH
Confidence 22233444566666665432 33444444443 2344555555544432 235688888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHhcCChHH
Q 042546 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-FIKYVSKSGTSDD 600 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t-~~~~l~~~g~~~~ 600 (671)
.+-.+.|.+.+|.+-|-+. -|...|..+++...+.|.+++-.+.+...++..-+|...+ ++-+|++.+++.+
T Consensus 1112 kAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1112 KAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHH
Confidence 8888888888888777543 2567888889999999999998888887777777777644 5788888888777
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 601 AIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 601 A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
-++++. -||......+.+-|...|.++.|.-++.....
T Consensus 1185 lE~fi~------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN 1222 (1666)
T KOG0985|consen 1185 LEEFIA------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN 1222 (1666)
T ss_pred HHHHhc------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh
Confidence 655432 16666777777777778888877777776554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0087 Score=69.69 Aligned_cols=268 Identities=11% Similarity=0.032 Sum_probs=165.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHh
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDE----SSYNAMASVLGREDCIDRFWKVLDEMRSKGY---EM--EMETCVKVLGRFSE 348 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~li~~~~~ 348 (671)
.|++++|...++....... ..+. ..++.+...+...|++++|...+++.....- .+ ...++..+...+..
T Consensus 465 ~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 465 DGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred CCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 5899999999988764211 1221 3456666677889999999999888764311 11 12345556667788
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHH
Q 042546 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGN---VLTDAMLNSVLKALISVGRMG 425 (671)
Q Consensus 349 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 425 (671)
.|++++|...+++.... ....+. ......+..+...+...|+++
T Consensus 544 ~G~~~~A~~~~~~al~~---------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 544 QGFLQAAYETQEKAFQL---------------------------------IEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred CCCHHHHHHHHHHHHHH---------------------------------HHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999998887631 000010 001122344455567779999
Q ss_pred HHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHhcCCHH
Q 042546 426 ECNKILKAMEEG--GFIA--SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV-GDKMW-----VSLIKGHCVAGDLD 495 (671)
Q Consensus 426 ~A~~~~~~m~~~--g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~-----~~li~~~~~~g~~~ 495 (671)
+|...+.+.... ...+ ....+..+...+...|+.++|.+.+++........ ....+ ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 999888876542 1112 23344456667778999999999888875421111 11111 11224455678999
Q ss_pred HHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCC-HHHHHHHHHHHHhcCCHHH
Q 042546 496 KAADCFQKMVEKEGTSHAG---YAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDLKPW-HTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~~ 568 (671)
.|.+++..... ....... ..+..+..++...|+.++|...+++.... .+..++ ..+...+-.++.+.|+.++
T Consensus 671 ~A~~~l~~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~ 749 (903)
T PRK04841 671 AAANWLRQAPK-PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE 749 (903)
T ss_pred HHHHHHHhcCC-CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH
Confidence 99988877544 2211111 11345666788889999999998877542 222222 2345556667788999999
Q ss_pred HHHHHHHHHhCC
Q 042546 569 ALSLLCLMKDHG 580 (671)
Q Consensus 569 A~~l~~~m~~~~ 580 (671)
|.+.+.+..+..
T Consensus 750 A~~~L~~Al~la 761 (903)
T PRK04841 750 AQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00073 Score=62.52 Aligned_cols=216 Identities=12% Similarity=0.042 Sum_probs=130.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499 (671)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 499 (671)
..+++..+..+.++.... -+..+.+.......+.|++++|.+-|+...+-+---....||..+..| +.|+.+.|++
T Consensus 124 se~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk 199 (459)
T KOG4340|consen 124 SEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALK 199 (459)
T ss_pred ccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHH
Confidence 467777777777776532 233444444445568999999999999887654344467788776554 5678899999
Q ss_pred HHHHHHHcCCCCC-------------CH--------HHHHHHHH-------HHHhcCCHHHHHHHHHHHHHhCCCCCCHH
Q 042546 500 CFQKMVEKEGTSH-------------AG--------YAIDLLVN-------TYCSKNRAIDACKFVHNCVREYDLKPWHT 551 (671)
Q Consensus 500 ~~~~m~~~~g~~p-------------~~--------~~~~~li~-------~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 551 (671)
...++.+ .|++- |+ ..-+.++. .+.+.|+.+.|.+.+-.|+.+..-..|.+
T Consensus 200 ~iSEIie-RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPv 278 (459)
T KOG4340|consen 200 HISEIIE-RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPV 278 (459)
T ss_pred HHHHHHH-hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCch
Confidence 9999998 88862 21 11233333 34567888888888888877666666777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhhhCC--CCCHHHHHHHHHHH
Q 042546 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKR--FPSMSVVLCLFAAF 626 (671)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~~~~--~p~~~~~~~l~~~~ 626 (671)
|...+.-.- ..+++.+..+-+.-+.+....|- .|| +-.||+..-++.|-.++-+=.... ..+...|+ |++++
T Consensus 279 TLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~-ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaL 355 (459)
T KOG4340|consen 279 TLHNQALMN-MDARPTEGFEKLQFLLQQNPFPP-ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDAL 355 (459)
T ss_pred hhhHHHHhc-ccCCccccHHHHHHHHhcCCCCh-HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHH
Confidence 665543221 13334333333333333322222 455 445578887888777766543321 13445554 34444
Q ss_pred HH-cCCHHHHHHHHHhch
Q 042546 627 FQ-ARRHSEAQDLLSKCP 643 (671)
Q Consensus 627 ~~-~g~~~~A~~~~~~m~ 643 (671)
.. .-..++|.+-++...
T Consensus 356 It~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 356 ITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HhCCCCHHHHHHHHHHHH
Confidence 43 456777777666643
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-06 Score=54.18 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=23.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 042546 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEME 335 (671)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 335 (671)
+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777766
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-06 Score=53.74 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCC
Q 042546 164 SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGV 197 (671)
Q Consensus 164 ~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p 197 (671)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0073 Score=58.80 Aligned_cols=268 Identities=13% Similarity=0.070 Sum_probs=176.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042546 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSN 444 (671)
Q Consensus 366 g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 444 (671)
.+.|+..+...-+.+++.+...+.......+-.... .-++-|+....++.+.+...|+.++|...|++..-.+ |+..
T Consensus 189 ~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i 266 (564)
T KOG1174|consen 189 TVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNV 266 (564)
T ss_pred ecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhh
Confidence 344555555555555555544443323333322322 3455667788999999999999999999999887432 3322
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHH
Q 042546 445 -MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVN 522 (671)
Q Consensus 445 -~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~ 522 (671)
......-.+.+.|+.+...++...+.... .-....|-.-........+++.|+.+-++.++ +.|+ ...|-.=-.
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~---~~~r~~~alilKG~ 342 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCID---SEPRNHEALILKGR 342 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc---cCcccchHHHhccH
Confidence 22223334567899999888888876432 12233344444455667788899888887765 2222 222322224
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHH--HHH-hcC
Q 042546 523 TYCSKNRAIDACKFVHNCVREYDLK-PWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV--DPFIK--YVS-KSG 596 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~t~~~--~l~-~~g 596 (671)
.+...|+.++|.-.|..... +. -+...|..|+.+|...|++.+|.-+-+...+. +..+. .|++. ++. ..-
T Consensus 343 lL~~~~R~~~A~IaFR~Aq~---Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 343 LLIALERHTQAVIAFRTAQM---LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred HHHhccchHHHHHHHHHHHh---cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCch
Confidence 56678999999999998864 34 47789999999999999999999877765432 22222 23332 221 233
Q ss_pred ChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 597 TSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 597 ~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
.-++|++++++-.+..|.-....+.+...+...|+.+++..++++-.
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 45789999998887665556677888899999999999999998844
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00032 Score=66.87 Aligned_cols=99 Identities=16% Similarity=0.135 Sum_probs=72.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--H
Q 042546 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS-S---NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD--K 479 (671)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~ 479 (671)
.....+-.+...+.+.|++++|...|++..+.. |+ . .++..+...|.+.|++++|...++++.+....... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 344567778888999999999999999987653 33 2 46777888999999999999999999875422111 1
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHH
Q 042546 480 MWVSLIKGHCVA--------GDLDKAADCFQKMVE 506 (671)
Q Consensus 480 ~~~~li~~~~~~--------g~~~~a~~~~~~m~~ 506 (671)
++..+..++.+. |+.++|.+.++.+.+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 344444445443 678889999998876
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00097 Score=69.44 Aligned_cols=202 Identities=16% Similarity=0.154 Sum_probs=144.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
|.-+|.+|+..|+..+|..+..+-.++ +||..-|..+.+.....--+++|+++++..-.. .-..+-....+
T Consensus 427 w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~ 497 (777)
T KOG1128|consen 427 WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILS 497 (777)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhcccccc
Confidence 778888999999999999888887763 688888888888887777889999988865432 11111111233
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRGFKDA 569 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 569 (671)
.++++++.+.|+.-.+...+ -..+|-.+-.++.+.++++.|.+.|..... ..| +...||.+-.+|.+.|+-.+|
T Consensus 498 ~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra 572 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRA 572 (777)
T ss_pred chhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHH
Confidence 68888998888876552333 344576677777788999999999988864 344 456899999999999999999
Q ss_pred HHHHHHHHhCCCCCCH--HHHHHHHHhcCChHHHHHHHHHhhhC--CCCCHHHHHHHHHHH
Q 042546 570 LSLLCLMKDHGFPPFV--DPFIKYVSKSGTSDDAIAFLKGMTSK--RFPSMSVVLCLFAAF 626 (671)
Q Consensus 570 ~~l~~~m~~~~~~p~~--~t~~~~l~~~g~~~~A~~~~~~m~~~--~~p~~~~~~~l~~~~ 626 (671)
...+++..+.+..|-. ..|..+..+.|.+++|.+.+.++... ...|..+-..++...
T Consensus 573 ~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 573 FRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 9999998877644432 33456667889999999998887662 122444444444333
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00032 Score=66.84 Aligned_cols=185 Identities=14% Similarity=0.092 Sum_probs=126.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD----KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG- 514 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~- 514 (671)
......+..+...+.+.|++++|...|+++.... |+. .++..+..++...|++++|...++++.+...-.|..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456677888888999999999999999987653 432 466777888999999999999999998723222322
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 042546 515 YAIDLLVNTYCSK--------NRAIDACKFVHNCVREYDLKPWHT-TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV 585 (671)
Q Consensus 515 ~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~ 585 (671)
.++..+-.++.+. |+.++|.+.|+.+... .|+.. .+..+... +...... ... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~------~~~-----~ 169 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL------AGK-----E 169 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH------HHH-----H
Confidence 2344444555544 6788899999888764 34432 22222111 1111110 000 0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 586 DPFIKYVSKSGTSDDAIAFLKGMTSKRF---PSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 586 ~t~~~~l~~~g~~~~A~~~~~~m~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
......+.+.|++++|...++...+..+ .....+..+..++.+.|++++|..+++.+..
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1334567789999999999999987533 3467889999999999999999999888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0051 Score=62.03 Aligned_cols=83 Identities=11% Similarity=0.053 Sum_probs=65.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~ 357 (671)
|+++.|...|-....-. ++|.+.|..=..+|++.|++++|++=-.+-.+ +.|+ ...|+-.-.++.-.|++++|+.
T Consensus 16 ~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 89999999998776422 66888899999999999999988876555544 4666 5678888888888899999999
Q ss_pred HHHHHHhC
Q 042546 358 LYEFAMAC 365 (671)
Q Consensus 358 l~~~m~~~ 365 (671)
-|.+-++.
T Consensus 92 ay~~GL~~ 99 (539)
T KOG0548|consen 92 AYSEGLEK 99 (539)
T ss_pred HHHHHhhc
Confidence 88876643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00015 Score=75.16 Aligned_cols=218 Identities=12% Similarity=0.024 Sum_probs=172.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042546 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483 (671)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 483 (671)
.+|-...-..+...+...|-..+|..+|+++. .|.-.|.+|+..|+..+|..+..+-.++ +||...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 44444455667788999999999999999875 5677899999999999999999888774 799999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042546 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563 (671)
Q Consensus 484 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (671)
+.+......-+++|.++++....+ -...++ ....+.++++++.+.|+.-.+.+.. -..+|-.+-.+..+.
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-----A~r~~~---~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-----AQRSLA---LLILSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQL 532 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-----HHHhhc---cccccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHH
Confidence 999988888999999999887551 011111 1122378999999999877664333 345777777777889
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 564 RGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 564 g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
++++.|.+-|..-.. ..||. +++..+|.+.|+-.+|...+++..+-...+...|..-+-...+.|.+++|.+.+
T Consensus 533 ek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHH
Confidence 999999999998775 57776 456778889999999999999998865667777777777888999999999999
Q ss_pred HhchH
Q 042546 640 SKCPR 644 (671)
Q Consensus 640 ~~m~~ 644 (671)
.++.+
T Consensus 611 ~rll~ 615 (777)
T KOG1128|consen 611 HRLLD 615 (777)
T ss_pred HHHHH
Confidence 98654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.5e-06 Score=52.16 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC
Q 042546 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM 334 (671)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 334 (671)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466666666666666666666666666666665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.014 Score=58.40 Aligned_cols=199 Identities=12% Similarity=0.036 Sum_probs=141.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 042546 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVS 483 (671)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~ 483 (671)
.|+...+...+.+......-..+...+.+-.+. .-...-|..-+ .+...|++++|+..++.+... .|| ...+..
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~ 345 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA--QPDNPYYLEL 345 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHh--CCCCHHHHHH
Confidence 345555666665544443333343333333321 11222333333 345689999999999998876 454 555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 484 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
....+.+.++.++|.+.++++.. ..|+ ....-.+-++|.+.|+..+|.++++.... ..+-|...|..|..+|..
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHH
Confidence 77889999999999999999976 4566 45566677899999999999999999875 466788899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHH
Q 042546 563 QRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKR---FPSMSVVLCLFAAFFQ 628 (671)
Q Consensus 563 ~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~---~p~~~~~~~l~~~~~~ 628 (671)
.|+..+|..-..++ +.-.|++++|+..+....+.. .|+..-+...|+....
T Consensus 421 ~g~~~~a~~A~AE~---------------~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~~~ 474 (484)
T COG4783 421 LGNRAEALLARAEG---------------YALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQLRQ 474 (484)
T ss_pred hCchHHHHHHHHHH---------------HHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 99999988766655 445799999999999888743 4555556666665443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.01 Score=56.61 Aligned_cols=57 Identities=5% Similarity=-0.096 Sum_probs=34.3
Q ss_pred HHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Q 042546 171 LRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFAT 227 (671)
Q Consensus 171 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~ 227 (671)
+.-+..+.++..|+.+++--...+-+-...+-.-+-..+-+.|+.++|.........
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~ 85 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN 85 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 444566777888888877665443222222222233455688988888877766555
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0082 Score=60.04 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=119.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVSLIKGHCVAGDL 494 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~ 494 (671)
-.+...|+.++|+..++.+.+.- +-|..-+......+.+.++.++|.+.++.+... .|+ ...+-.+-.++.+.|+.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 34567899999999999988663 445566677788899999999999999999886 566 56677788999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLC 574 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 574 (671)
.+|..+++.... ..+-|...|..|..+|...|+..++..-..+ +|.-.|+++.|...+.
T Consensus 391 ~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 391 QEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQAIIFLM 449 (484)
T ss_pred HHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHHHHHHH
Confidence 999999999876 4556778899999999999999888665443 4566899999999988
Q ss_pred HHHhCCCCCCHHHHHH
Q 042546 575 LMKDHGFPPFVDPFIK 590 (671)
Q Consensus 575 ~m~~~~~~p~~~t~~~ 590 (671)
...+. .+++..++..
T Consensus 450 ~A~~~-~~~~~~~~aR 464 (484)
T COG4783 450 RASQQ-VKLGFPDWAR 464 (484)
T ss_pred HHHHh-ccCCcHHHHH
Confidence 88765 4555555433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.7e-06 Score=50.29 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHcCC
Q 042546 165 KTYNLMLRIVGVHGLVQEFWGLVDVMKKKGY 195 (671)
Q Consensus 165 ~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~ 195 (671)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999875
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00028 Score=71.34 Aligned_cols=217 Identities=11% Similarity=0.040 Sum_probs=162.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
+.+.|++.+|.-.|+...+.. +-+...|--|-..-..+++-..|+..+++..+.. +-|....-.|--.|...|.-.+|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 467899999999999988775 5577889999888889999999999999888764 33567788888889999999999
Q ss_pred HHHHHHHHHcCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 498 ADCFQKMVEKEGTS--------HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569 (671)
Q Consensus 498 ~~~~~~m~~~~g~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 569 (671)
+..++.-.. ...+ ++...-.. ........+....++|-++....+..+|...+..|--.|--.|.+++|
T Consensus 373 l~~L~~Wi~-~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 373 LKMLDKWIR-NKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHH-hCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 999888765 2211 01000000 112222344556777777777667567777777777778889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHH----HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 570 LSLLCLMKDHGFPPFVDPFI----KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 570 ~~l~~~m~~~~~~p~~~t~~----~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
...|+.... +.|+...+. ..++...+.++|+..+.+..+..|-=+.+...|.-.|...|.++||.+.|-+
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 999999886 578887663 4556788899999999999886654455566677889999999999988876
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.03 Score=58.01 Aligned_cols=396 Identities=14% Similarity=0.046 Sum_probs=223.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 042546 133 VLKVLKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKE 212 (671)
Q Consensus 133 ~~~~l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 212 (671)
+..++.+...++++|.+.|........ -|...|--+--.=++.|+++.....-.+..+.. .-....|.....+.--.
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL 156 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Confidence 344455546899999999999876221 345556555444466677777777666666542 22456677777777788
Q ss_pred CChhHHHHHHHHHHcCCC-CChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHH
Q 042546 213 GLESDLEKLKGIFATGSI-DNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWA 291 (671)
Q Consensus 213 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~ 291 (671)
|....+..+.+.+.+... ..+....-...+-..++ .+..-.|.+++|++-....
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n-------------------------~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQN-------------------------QILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH-------------------------HHHHHcccHHHHHHHHHhh
Confidence 888888877777766442 11111111111111100 0000026677777766554
Q ss_pred HHcCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hCCChHHHH-HHHHHHHhC---
Q 042546 292 EESGFVKHDESS-YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFS-ERNMVKEAV-DLYEFAMAC--- 365 (671)
Q Consensus 292 ~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~a~-~l~~~m~~~--- 365 (671)
..+ .-|-.. --+-...+.+.+++++|..++..+..+ .||..-|...+..+. +-.+.-+++ .+|....+.
T Consensus 212 e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 212 EKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred hhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 321 223222 234456778889999999999999887 577776665554443 333333333 666655432
Q ss_pred CCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCC---
Q 042546 366 KNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAME----EGG--- 438 (671)
Q Consensus 366 g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g--- 438 (671)
.-.|-....+.+ .+..-.......+....+.|+++ ++..+.+.|-.-...+--+++.-.+. ..|
T Consensus 287 ~e~p~Rlplsvl------~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 287 HECPRRLPLSVL------NGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred cccchhccHHHh------CcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCC
Confidence 111211111111 12111234455555555666654 34444444433222221112221111 111
Q ss_pred -------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 042546 439 -------FIASSNMKS--KIAFRLSSAGKKDEANEFMDHMEASGSDVGDK-MWVSLIKGHCVAGDLDKAADCFQKMVEKE 508 (671)
Q Consensus 439 -------~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 508 (671)
-+|....|+ .++..|-+.|+++.|...++..... .|+.+ .|..=.+.+.+.|++++|..++++..+ .
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e-l 434 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE-L 434 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh-c
Confidence 145555554 4677788899999999999988765 55543 344555778889999999999998876 2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH--------HHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 042546 509 GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT--------TYEEL--IKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 509 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--------~~~~l--i~~~~~~g~~~~A~~l~~~m~ 577 (671)
. .||...-+--..-..++.++++|.++.....+. |. +.. +|-.+ -.+|.+.|++..|++=|..+.
T Consensus 435 D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~-~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 435 D-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE-GF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred c-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc-cc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 2 345444434555556788899999888887653 43 222 33332 235677777877777666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0032 Score=68.71 Aligned_cols=135 Identities=8% Similarity=-0.077 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-HHHH
Q 042546 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG-YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH-TTYE 554 (671)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~ 554 (671)
+...+-.|.....+.|..++|+.+++...+ +.||. .....+...+.+.+++++|...+++... ..|+. ....
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~ 158 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS---GGSSSAREIL 158 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh---cCCCCHHHHH
Confidence 345555555555566666666666666544 34443 2333444555556666666666655543 22332 3334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHH
Q 042546 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVV 619 (671)
Q Consensus 555 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~ 619 (671)
.+-.++.+.|++++|.++|++.... .|+. ..+...+...|+.++|...|+...+...+...-|
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 4444555566666666666665542 2221 1223444455666666666655555333333333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0016 Score=59.68 Aligned_cols=114 Identities=10% Similarity=0.070 Sum_probs=59.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHH-HhcCC--hH
Q 042546 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYV-SKSGT--SD 599 (671)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l-~~~g~--~~ 599 (671)
.++.+++...++..... -..|...|..+...|...|++++|.+.+++..+. .|+...+ ..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 34444444444444432 2334455555555566666666666666655542 3433222 1221 33344 35
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 600 DAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 600 ~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
+|..++++..+..+.+...+..+...+.+.|++++|...|+++.+
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666666665555556666666666666666666666666544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.1e-05 Score=48.69 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCC
Q 042546 302 SSYNAMASVLGREDCIDRFWKVLDEMRSKGY 332 (671)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 332 (671)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677777777777777777777777776653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0082 Score=55.12 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=44.2
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH---HHHHhcCC
Q 042546 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV----QRGFKDALSLLCLMKDHGFPPFVDPFI---KYVSKSGT 597 (671)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~t~~---~~l~~~g~ 597 (671)
.+..+++-|.+.++.|.+- -+..|.+.|..++.+ .+.+.+|.-+|++|-++ ..|+..++. .+....|+
T Consensus 148 lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 3444555555555555431 122344434443332 23345555555555432 334433331 11123455
Q ss_pred hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 042546 598 SDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARR 631 (671)
Q Consensus 598 ~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~ 631 (671)
+++|..+++....+...++.+...++-.-...|.
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 5555555555555444444444444443334443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0045 Score=68.37 Aligned_cols=222 Identities=9% Similarity=0.018 Sum_probs=141.6
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEME-TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 376 (671)
+.+...|-.|+..+...+++++|.++.+.-.+. .|+.. .|..+...+.+.++.+++..+ .+.. ..+...-|+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~~~~~~ 101 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQNLKWAI 101 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccccchhH
Confidence 456788999999999999999999999976665 45533 333333467778887777777 3332 1222221222
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456 (671)
Q Consensus 377 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 456 (671)
+ +.+...+.+ ..-+...+-.+..+|-+.|+.++|..+++++.+.. +-|..+.|-+...|+..
T Consensus 102 v---------------e~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 102 V---------------EHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred H---------------HHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 2 122222222 12223467889999999999999999999999887 67889999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------cCCCCCCHHHHH
Q 042546 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE------------------KEGTSHAGYAID 518 (671)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------------------~~g~~p~~~~~~ 518 (671)
++++|.+++.+.... +...+++..+.++|.++.. ..|..--..++-
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence 999999999887654 3444455555555555544 223233334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL 561 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 561 (671)
.+-..|-...+++++..+++.+.+. -.-|.....-++..|.
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHH
Confidence 4555566666666666666666542 1223344444554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00036 Score=70.12 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=92.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYV 592 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l 592 (671)
..+|+..+...++++.|..+|+++.++ .|+. ...|+..+...++-.+|.+++++..+. .|....+ ...|
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPEV--AVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 344555666677888888888888764 2543 344666677777778888888877753 3433333 3445
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 593 SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
.+.++.+.|.++.+++....|-+..+|..|..+|.+.|++++|+..++.||-.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 68889999999999999888788899999999999999999999999999843
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.06 Score=57.99 Aligned_cols=221 Identities=11% Similarity=-0.051 Sum_probs=125.3
Q ss_pred HHHHHHhcCCCCCHHHHHHH-HHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC
Q 042546 117 ISKQLELSGVVFTHEMVLKV-LKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGY 195 (671)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~ 195 (671)
+...+.+|+.......+-.. +.+ .|..++|..+++.... .+. .|..|..++-..|.+.|+.++|..+|++..+.
T Consensus 32 ~~kllkk~Pn~~~a~vLkaLsl~r-~gk~~ea~~~Le~~~~-~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~-- 106 (932)
T KOG2053|consen 32 LGKLLKKHPNALYAKVLKALSLFR-LGKGDEALKLLEALYG-LKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK-- 106 (932)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHH-hcCchhHHHHHhhhcc-CCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--
Confidence 34455666655444333222 234 5999999988888766 332 38889999999999999999999999998866
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHH-HHHHHHcCCCCChHHHHHHHHHHHHhcC-CChhHHHHHHhhcccccChHHHHHH
Q 042546 196 GVASHVRNKMTEKFEKEGLESDLEK-LKGIFATGSIDNSIEKVASRICKVVRSD-IWGDDVERQLRDLNVTFSNDLVKFV 273 (671)
Q Consensus 196 ~p~~~t~~~ll~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (671)
-|+..-...+..+|.+.+.+..-.+ ..++++..+...-.-|.+..+....... ..... .
T Consensus 107 ~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~-----------------~-- 167 (932)
T KOG2053|consen 107 YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLD-----------------P-- 167 (932)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCccccc-----------------c--
Confidence 6788888999999999887766543 4566666665554434333322221111 00000 0
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 042546 274 VDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVL-DEMRSKGYEMEMETCVKVLGRFSERNMV 352 (671)
Q Consensus 274 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~g~~p~~~t~~~li~~~~~~g~~ 352 (671)
--+.-|.+.++.+.+..|.--+..-.-.-...+-..|++++|++++ ....+.-..-+...-+--+..+...+++
T Consensus 168 -----i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 168 -----ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred -----hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence 0112344444444443331111111112223334455566666666 3333332233444444555556666666
Q ss_pred HHHHHHHHHHHhCC
Q 042546 353 KEAVDLYEFAMACK 366 (671)
Q Consensus 353 ~~a~~l~~~m~~~g 366 (671)
.+..++-.++...|
T Consensus 243 ~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 243 QELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHHHhC
Confidence 66666666666543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0078 Score=59.42 Aligned_cols=242 Identities=9% Similarity=0.018 Sum_probs=158.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG-KKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
++..+-..+...+..++|+.+..++.+.. +-+..+|+.--..+...| +++++++.++++.+.. ..+..+|+.--..+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 45566667777889999999999988754 344556776666666777 6799999999988765 33455677555555
Q ss_pred HhcCC--HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 042546 489 CVAGD--LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ--- 563 (671)
Q Consensus 489 ~~~g~--~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--- 563 (671)
.+.|. .+++..+++++.+ .. .-|..+|+-..-++.+.|+++++.+.++++.+. -.-|...|+.....+.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~-~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILS-LD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHcCchhhHHHHHHHHHHHH-hC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhcccc
Confidence 56665 3677888888876 22 236777888888888889999999999999874 234556777665555443
Q ss_pred CCH----HHHHHHHHHHHhCCCCCCHHH---HH-HHHHhc----CChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 042546 564 RGF----KDALSLLCLMKDHGFPPFVDP---FI-KYVSKS----GTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARR 631 (671)
Q Consensus 564 g~~----~~A~~l~~~m~~~~~~p~~~t---~~-~~l~~~----g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~ 631 (671)
|.. +++++...++... .|+..+ +. .+|... ++..+|.+++.+.....+.+......|++.|+....
T Consensus 193 ~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~ 270 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQ 270 (320)
T ss_pred ccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhc
Confidence 222 4566776666643 454422 23 333332 445678888888777666778888889999986321
Q ss_pred -HHHHHHHHHhchHhhhccHHHHHHHHhh
Q 042546 632 -HSEAQDLLSKCPRYVRNHADVLNLLYSK 659 (671)
Q Consensus 632 -~~~A~~~~~~m~~~~~~~~~~~~l~~~m 659 (671)
..+....++...........+..++..+
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 271 PTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred cchhhhhhhhccccccccHHHHHHHHHHH
Confidence 1122222222222223456677777766
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0012 Score=57.22 Aligned_cols=125 Identities=15% Similarity=0.143 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-----H
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-----F 588 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t-----~ 588 (671)
..|..++..+ ..++...+...++.+..+++-.| .....-.+...+...|++++|...|+........|.... +
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 47888888888888877532221 112333344667778999999999999887653332221 2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
..++...|++++|+..++.... .......+....++|.+.|++++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~-~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPD-EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccC-cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4555688999999999876433 234566778889999999999999998875
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.021 Score=58.30 Aligned_cols=212 Identities=9% Similarity=0.088 Sum_probs=126.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~ 356 (671)
.|++.+|.-.|+....+. +-+...|--|--....+++-..|+..+.+-.+. .| |....-.|.-.|...|.-.+|+
T Consensus 298 nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred cCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHHHH
Confidence 388999999999887654 667899999999999999999999999888876 45 5777788888899999999999
Q ss_pred HHHHHHHhCCCCC--------CHHHHHHHHHHHHhcCccc---HHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 042546 357 DLYEFAMACKNKP--------SVNCCTFLLRKIVVSKQLD---MRLFSKVV-RVFRENGNVLTDAMLNSVLKALISVGRM 424 (671)
Q Consensus 357 ~l~~~m~~~g~~p--------~~~~~~~ll~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (671)
..++.-.+...+- +...-+. .+..+ ...+.+++ +.....+..+|..+...|--.|--.|++
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~-------~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT-------KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC-------cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 9888875432100 0000000 00011 11122222 2222233335555555555555556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD-KMWVSLIKGHCVAGDLDKAADCFQK 503 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~ 503 (671)
++|.+.|+...... +-|...||.|-..++...+.++|...|++..+. +|+- ...--|--+|...|.+++|.+.|-.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 66666666555443 334455666666666666666666666665543 3432 1222233345555666665555543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00086 Score=57.93 Aligned_cols=92 Identities=12% Similarity=-0.071 Sum_probs=51.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
.....+...|++++|...|+...... +.+...|..+...+.+.|++++|...|+...+.. +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34445555666666666666655443 3455555555555666666666666666655443 234455555555555566
Q ss_pred CHHHHHHHHHHHHH
Q 042546 493 DLDKAADCFQKMVE 506 (671)
Q Consensus 493 ~~~~a~~~~~~m~~ 506 (671)
+.++|.+.|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0019 Score=59.05 Aligned_cols=116 Identities=10% Similarity=0.004 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC--HHHHHH
Q 042546 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG-HCVAGD--LDKAAD 499 (671)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~a~~ 499 (671)
+.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. .-+...+..+..+ +...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444433333 3444445555555555555555555555444432 1233334333333 233333 245555
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 500 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
++++..+ .. .-+...+..+...+.+.|++++|...|+++.+
T Consensus 132 ~l~~al~-~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALA-LD-ANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHH-hC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555444 11 11233344444444455555555555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.053 Score=53.62 Aligned_cols=163 Identities=9% Similarity=0.016 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 410 MLNSVLKALISVG-RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK--DEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 410 ~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
+|+.--.++.+.| ++++++..++++.+.. +.+..+|+.---.+.+.|+. ++++.+++++.+.. .-|..+|+-...
T Consensus 73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w 150 (320)
T PLN02789 73 VWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQW 150 (320)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 4444444555555 4677777777776554 34445566554445555542 56666776666554 345666777666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK---NRA----IDACKFVHNCVREYDLKPWHTTYEELIKN 559 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 559 (671)
.+.+.|+++++++.++++.+ .... |...|+.....+.+. |.. +++.....+.... .+-|...|+-+...
T Consensus 151 ~l~~l~~~~eeL~~~~~~I~-~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~l 226 (320)
T PLN02789 151 VLRTLGGWEDELEYCHQLLE-EDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGL 226 (320)
T ss_pred HHHHhhhHHHHHHHHHHHHH-HCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHH
Confidence 67777777777777777766 3322 334454444444333 222 3445555444432 22344566666555
Q ss_pred HHhc----CCHHHHHHHHHHHHh
Q 042546 560 LLVQ----RGFKDALSLLCLMKD 578 (671)
Q Consensus 560 ~~~~----g~~~~A~~l~~~m~~ 578 (671)
+... ++..+|.+.+.+..+
T Consensus 227 l~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 227 FKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HhcCCcccccchhHHHHHHHhhc
Confidence 5552 233456666666544
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00046 Score=69.63 Aligned_cols=121 Identities=12% Similarity=0.097 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 042546 404 NVLTDAMLNSVLKALISVGRMGECNKILKAMEEG--GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW 481 (671)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 481 (671)
.+.+......+++.+....+++++..++.+.... ....-..|..++|..|.+.|..+++++++..=...|+-||..|+
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3334444444455444444455555554444432 11111122235555555555555555555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 042546 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525 (671)
Q Consensus 482 ~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 525 (671)
|.+|+.+.+.|++..|.++...|.. .+...+..|+..-+.+|.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHH
Confidence 5555555555555555555555444 344344444444443333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0077 Score=55.31 Aligned_cols=126 Identities=17% Similarity=0.087 Sum_probs=59.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 042546 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527 (671)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 527 (671)
-+-..+-..|+-+.+..+........ ..|....+..+....+.|++..|...+++... .-++|...|+.+--+|.+.
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 33444444555555554444433221 22333344455555555555555555555543 3344555555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
|+.++|..-|.+..+-.+- +...++-|.-.|.-.|+.+.|..++.....
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~--~p~~~nNlgms~~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 148 GRFDEARRAYRQALELAPN--EPSIANNLGMSLLLRGDLEDAETLLLPAYL 196 (257)
T ss_pred cChhHHHHHHHHHHHhccC--CchhhhhHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555555432111 222334444444445555555555555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.014 Score=53.63 Aligned_cols=159 Identities=13% Similarity=0.050 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
.-+-..+...|+-+....+........ +.|....+..+....+.|++..|...|++..... ++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334455566677666666666544221 3455556667777888888888888888877654 67778888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALS 571 (671)
Q Consensus 492 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 571 (671)
|+.+.|..-|.+..+..+-. ...++.|.-.|.-.|+.+.|..++...... -.-|...-.-+.-.....|++++|..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHh
Confidence 88888888888887632322 234555666666778888888888877642 23355566666667777888888887
Q ss_pred HHHHH
Q 042546 572 LLCLM 576 (671)
Q Consensus 572 l~~~m 576 (671)
+...-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 76543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.042 Score=50.64 Aligned_cols=116 Identities=15% Similarity=0.073 Sum_probs=54.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV----A 491 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~ 491 (671)
..|++.|++++|++...... ....... =+..+.+..+.+-|.+.+++|.+. -+..|.+-|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34555555555555554411 1122222 122334455555555555555542 233444444444332 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 492 g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+.+.+|.-+|++|-+ ...|+..+.+-...++...|++++|..++++...
T Consensus 187 ek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 345555555555532 2445555555555555555555555555555544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.054 Score=51.68 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=128.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHH---HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhCCChHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAM---ASVLGREDCIDRFWKVLDEMRSKGYEMEMETCV-KVLGRFSERNMVKE 354 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~~ 354 (671)
|.+.+|+.-|.... .-|...|-++ ...|...|+..-|+.=|....+. +||-..-. .--..+.+.|.++.
T Consensus 52 ~Q~sDALt~yHaAv-----e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 52 GQLSDALTHYHAAV-----EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred hhHHHHHHHHHHHH-----cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHH
Confidence 78888998888776 3344444444 46788888888888888887765 67743322 12344678999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 355 AVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAM 434 (671)
Q Consensus 355 a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 434 (671)
|..=|+..+.+. |+.-+ ...+..+.. .+.+. ......+..+...|+...|+.....+
T Consensus 125 A~~DF~~vl~~~--~s~~~---~~eaqskl~-----~~~e~-------------~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 125 AEADFDQVLQHE--PSNGL---VLEAQSKLA-----LIQEH-------------WVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred HHHHHHHHHhcC--CCcch---hHHHHHHHH-----hHHHH-------------HHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 999999998753 32211 111111100 00010 11234455566678888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 042546 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514 (671)
Q Consensus 435 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~ 514 (671)
.+.. +-|...|..-..+|...|.+..|+.=+....+.. .-++.++--+-..+...|+.+.++...++..+ +.||.
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdH 256 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDH 256 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcch
Confidence 7653 3456666777788888888888887666655433 33455555566667778888888877777755 55664
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00075 Score=68.15 Aligned_cols=132 Identities=13% Similarity=0.081 Sum_probs=102.3
Q ss_pred HHHHHH---hCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 358 LYEFAM---ACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFREN--GNVLTDAMLNSVLKALISVGRMGECNKILK 432 (671)
Q Consensus 358 l~~~m~---~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 432 (671)
++..|. ..+...+......+++.+.... +.+.+..++..++.. ....-..|..++|..|.+.|..+++..+++
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~--~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~ 127 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKD--DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLK 127 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHh--HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHh
Confidence 555554 3344556666666666654333 355677777777765 333334566799999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 433 AMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 433 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
.=...|+-||..++|.||+.+.+.|++..|.++..+|...+...+..|+.-.+.+|.+-
T Consensus 128 n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 128 NRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998877777888888777777666
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00067 Score=53.38 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=61.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 305 NAMASVLGREDCIDRFWKVLDEMRSKGY-EMEMETCVKVLGRFSERN--------MVKEAVDLYEFAMACKNKPSVNCCT 375 (671)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g--------~~~~a~~l~~~m~~~g~~p~~~~~~ 375 (671)
...|.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666666888888999999999998 889999999888877653 3456677888888888888888888
Q ss_pred HHHHHHHhc
Q 042546 376 FLLRKIVVS 384 (671)
Q Consensus 376 ~ll~~~~~~ 384 (671)
.++..+.++
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 887776543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.034 Score=61.73 Aligned_cols=235 Identities=11% Similarity=0.012 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHH
Q 042546 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMT-EKFEKEGLESDLEKLKGIFATGSIDNSIEKVASR 240 (671)
Q Consensus 162 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (671)
.+...|-.||..+-..+++++|.++.++-.+. .|+...+--.. ..+.+.+...++..+ .+.+......
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~-------- 97 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNL-------- 97 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-hhhhhccccc--------
Confidence 46788999999999999999999999966554 44443332222 155566655555443 2222222111
Q ss_pred HHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHH
Q 042546 241 ICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRF 320 (671)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (671)
++.....+...|.. ..-+...+-++..+|-+.|+.++|
T Consensus 98 ---------------------------------------~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka 135 (906)
T PRK14720 98 ---------------------------------------KWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKL 135 (906)
T ss_pred ---------------------------------------chhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHH
Confidence 11111112222221 122334555566666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCcccHHHHHHHHH
Q 042546 321 WKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR---KIVVSKQLDMRLFSKVVR 397 (671)
Q Consensus 321 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~~~~~~~~~ 397 (671)
..+++++.+.. +-|..+.|.+...|+.. ++++|++++.+....-+ +..-|+.+.. -++.....+.+.+.++.+
T Consensus 136 ~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ 211 (906)
T PRK14720 136 KGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIER 211 (906)
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHH
Confidence 66666666654 22566666666666666 66666666666554311 1112222222 222333334455556666
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 398 VFREN-GNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLS 454 (671)
Q Consensus 398 ~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 454 (671)
.+... +...-..++-.+-..|-+.++++++..+++.+.+.. +.|.....-++..|.
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 66554 444455677778888999999999999999999865 456667777777776
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0035 Score=54.08 Aligned_cols=100 Identities=5% Similarity=-0.077 Sum_probs=70.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 042546 446 KSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525 (671)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 525 (671)
+..+...+.+.|++++|...|+...... +.+...|..+...+...|++++|...|+...+ . -+.+...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~-l-~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM-L-DASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-c-CCCCcHHHHHHHHHHH
Confidence 4456667777888888888888877654 34666777777778888888888888888776 2 2235566677777777
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHH
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPWHT 551 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~~~ 551 (671)
..|+.++|...|+.... ..|+..
T Consensus 104 ~~g~~~eAi~~~~~Al~---~~p~~~ 126 (144)
T PRK15359 104 MMGEPGLAREAFQTAIK---MSYADA 126 (144)
T ss_pred HcCCHHHHHHHHHHHHH---hCCCCh
Confidence 78888888888887765 345443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0019 Score=65.06 Aligned_cols=125 Identities=15% Similarity=0.097 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
....+++..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +-|......-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345566667777888889999999888654 44 34457777777888888888888887653 33556666666777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCV 541 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (671)
.+.++.+.|+++.+++.+ ..|+ ..+|..|..+|.+.|++++|...++.++
T Consensus 245 l~k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888866 4454 4478888888888888888888888775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0013 Score=58.61 Aligned_cols=98 Identities=17% Similarity=0.214 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC---------
Q 042546 285 LIFFRWAEESGFVKHDESSYNAMASVLGRE-----DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN--------- 350 (671)
Q Consensus 285 ~~~f~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--------- 350 (671)
...|+... +-..|..+|..+|+.|.+. |..+-....+..|.+.|+.-|..+|+.||+.+=+..
T Consensus 34 ~~~f~~~~---~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~ 110 (228)
T PF06239_consen 34 EELFERAP---GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQA 110 (228)
T ss_pred HHHHHHHh---hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHH
Confidence 34555543 2278899999999999755 778888889999999999999999999999876532
Q ss_pred -------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 351 -------MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385 (671)
Q Consensus 351 -------~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 385 (671)
+.+-|++++++|...|+.||..|+..+++.+++.+
T Consensus 111 ~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 111 EFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 22445555555555555555555555555554444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0015 Score=51.53 Aligned_cols=79 Identities=8% Similarity=0.111 Sum_probs=52.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGF-IASSNMKSKIAFRLSSAG--------KKDEANEFMDHMEASGSDVGDKMWV 482 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~ 482 (671)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+++.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4445555566888888888888888887 788888888887776543 2334556666666666666666666
Q ss_pred HHHHHHHh
Q 042546 483 SLIKGHCV 490 (671)
Q Consensus 483 ~li~~~~~ 490 (671)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 66665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.04 Score=60.37 Aligned_cols=183 Identities=11% Similarity=0.064 Sum_probs=129.6
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCC-HHH
Q 042546 332 YEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLT-DAM 410 (671)
Q Consensus 332 ~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 410 (671)
...+...+-.|.....+.|.+++|..+++...+ ..|| ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---------------------------------------~~Pd~~~a 122 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---------------------------------------RFPDSSEA 122 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---------------------------------------hCCCcHHH
Confidence 344677888888888888999999988888764 3344 446
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
...+...+.+.+++++|....++..+.. +-+....+.+..++.+.|++++|..+|++....+ .-+..++..+-.++-.
T Consensus 123 ~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~ 200 (694)
T PRK15179 123 FILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTR 200 (694)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHH
Confidence 7778888899999999999999988775 4556677788888889999999999999998743 2347788888889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhc
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDLKPWHTTYEELIKNLLVQ 563 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~~~~~~~li~~~~~~ 563 (671)
.|+.++|...|+...+ ...|...-|+-.+ +++..-..+++++..+ -|....+.....+|.-|.+.
T Consensus 201 ~G~~~~A~~~~~~a~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 201 RGALWRARDVLQAGLD--AIGDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred cCCHHHHHHHHHHHHH--hhCcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 9999999999999886 3344445555443 2333334455554322 12233344555566556553
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.002 Score=57.55 Aligned_cols=100 Identities=11% Similarity=0.092 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHH
Q 042546 441 ASSNMKSKIAFRLSS-----AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA----------------GDLDKAAD 499 (671)
Q Consensus 441 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------------g~~~~a~~ 499 (671)
.|-.+|..++..|.+ .|.++=....+..|.+.|+..|..+|+.||+.+=+. .+-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 444445555554443 244555555555555555555555555555544332 23455666
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 042546 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNR-AIDACKFVHNCV 541 (671)
Q Consensus 500 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 541 (671)
++++|.. .|+-||..|+..|++.+++.+. +....++.--|.
T Consensus 125 lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 125 LLEQMEN-NGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHHH-cCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 7777776 6777777777777776665544 223333433343
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0044 Score=52.96 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 042546 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526 (671)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 526 (671)
..+...+.+.|++++|.+.|+.....+ ..+...|..+...+.+.|++++|...++...+ .. +.+...+..+-..|..
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA-LD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC-CCChHHHHHHHHHHHH
Confidence 334444444555555555555544432 22334444444444455555555555554443 21 2223334444444445
Q ss_pred cCCHHHHHHHHHHHH
Q 042546 527 KNRAIDACKFVHNCV 541 (671)
Q Consensus 527 ~g~~~~A~~~~~~m~ 541 (671)
.|+.++|...|+...
T Consensus 98 ~g~~~~A~~~~~~al 112 (135)
T TIGR02552 98 LGEPESALKALDLAI 112 (135)
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555554444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0032 Score=53.84 Aligned_cols=105 Identities=12% Similarity=0.060 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
.....+...+.+.|++++|.+.|+.....+ +.+...|..+...|.+.|++++|...++...+.+ +.+...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 345667778889999999999999998765 5678889999999999999999999999988765 44667777788899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAID 518 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 518 (671)
...|+.++|.+.|+...+ ..|+...+.
T Consensus 96 ~~~g~~~~A~~~~~~al~---~~p~~~~~~ 122 (135)
T TIGR02552 96 LALGEPESALKALDLAIE---ICGENPEYS 122 (135)
T ss_pred HHcCCHHHHHHHHHHHHH---hccccchHH
Confidence 999999999999999877 345544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0084 Score=54.63 Aligned_cols=184 Identities=11% Similarity=0.043 Sum_probs=104.9
Q ss_pred cCCHHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 456 AGKKDEANEFMDHMEA---SG-SDVGDKM-WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530 (671)
Q Consensus 456 ~g~~~~A~~~~~~m~~---~g-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 530 (671)
..+.++..+++.++.. .| ..++..+ |.-++-+....|+.+.|...++.+..+..-.+-+.-..++ -+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhch
Confidence 4566777777776642 33 3444433 4555556666677777777777766522111112111111 12335777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHH
Q 042546 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKG 607 (671)
Q Consensus 531 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~ 607 (671)
++|.++++.+.++ -+.|.++|--=+...-..|+--+|++-+.+..+. +..|...+ ...|...|+++.|.-.+++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 7777777777653 2445556655454455556556666666655543 44455544 4556667777777777777
Q ss_pred hhhCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhchH
Q 042546 608 MTSKRFPSMSVVLCLFAAFFQARR---HSEAQDLLSKCPR 644 (671)
Q Consensus 608 m~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~ 644 (671)
+.-..|.+...+..+.+.+.-.|- .+-|.+++.+..+
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 776666666666666666655443 3446666665544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.011 Score=51.23 Aligned_cols=124 Identities=19% Similarity=0.182 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIAS---SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD--KMWVSLI 485 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li 485 (671)
|..++..+ ..++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........|+. ...-.+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 3566666666666666542 112 122223345555666666666666666655422211 1233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 486 KGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539 (671)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 539 (671)
..+...|++++|+..++.... ... ....+...-+.|.+.|+.++|...|+.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~-~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD-EAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC-cch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555566666666666654322 222 233444455556666666666666543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.23 Score=54.46 Aligned_cols=216 Identities=9% Similarity=-0.019 Sum_probs=153.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 501 (671)
.+...|...|-+..+.. +-=...|..|-..|+...+...|.+.|+...+.. ..|...+....+.|+...+++.|..+.
T Consensus 472 K~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34667777766666443 1224678889999998889999999999987654 346677889999999999999999984
Q ss_pred HHHHHcCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 502 QKMVEKEGTSHAGYAIDLLV--NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 502 ~~m~~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
-...++.. .-...++.+- -.|.+.++...|..-|+...+ --+-|...|..+..+|.+.|++..|+++|.+...
T Consensus 550 l~~~qka~--a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~- 624 (1238)
T KOG1127|consen 550 LRAAQKAP--AFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL- 624 (1238)
T ss_pred HHHhhhch--HHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh-
Confidence 33332111 1122233333 346778899999999988865 2334677999999999999999999999988875
Q ss_pred CCCCCHH--HH--HHHHHhcCChHHHHHHHHHhhhCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 580 GFPPFVD--PF--IKYVSKSGTSDDAIAFLKGMTSKR-------FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 580 ~~~p~~~--t~--~~~l~~~g~~~~A~~~~~~m~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
+.|+.. .| ....|..|.+++|...+..++... .--..++..+...+.-.|-..+|..++++-.++
T Consensus 625 -LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 625 -LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred -cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 466642 22 334478999999999988876521 123456666667777778888888888775543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=48.50 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=54.5
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHH
Q 042546 593 SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLY 657 (671)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 657 (671)
.+.|++++|++.|+.+....|.+...+..+..+|.+.|++++|.++++++....++.+....+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 35789999999999999888888999999999999999999999999999887777666665543
|
... |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.41 Score=52.54 Aligned_cols=442 Identities=12% Similarity=0.054 Sum_probs=231.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLS-SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLE 219 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~-~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~ 219 (671)
..+...|+..|-...+.. ++ ...|..|-..|+..-+...|...|+...+.. .-|........+.|++...++.|.
T Consensus 471 rK~~~~al~ali~alrld---~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD---VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHH
Confidence 356778888877666511 22 4578889999988888888999999887653 236677888889999999888887
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 042546 220 KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKH 299 (671)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~ 299 (671)
.+.- ........ ......... .|+- ++. .++...|..-|+...+.. +.
T Consensus 547 ~I~l--~~~qka~a-----------------~~~k~nW~~-rG~y--------yLe--a~n~h~aV~~fQsALR~d--Pk 594 (1238)
T KOG1127|consen 547 EICL--RAAQKAPA-----------------FACKENWVQ-RGPY--------YLE--AHNLHGAVCEFQSALRTD--PK 594 (1238)
T ss_pred HHHH--HHhhhchH-----------------HHHHhhhhh-cccc--------ccC--ccchhhHHHHHHHHhcCC--ch
Confidence 6521 11111100 000000000 1110 111 167778888888776433 67
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhCCChHHHHHHHHHHHhC------CCCCCH
Q 042546 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVL--GRFSERNMVKEAVDLYEFAMAC------KNKPSV 371 (671)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li--~~~~~~g~~~~a~~l~~~m~~~------g~~p~~ 371 (671)
|...|..+..+|..+|++..|.++|++.... .|+ .+|...- ..-+..|.+++|+..+...... +..--.
T Consensus 595 D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLa 671 (1238)
T KOG1127|consen 595 DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLA 671 (1238)
T ss_pred hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 8999999999999999999999999988765 343 3343322 2345679999999999877632 000001
Q ss_pred HHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHH
Q 042546 372 NCCTFLLRKIVVSKQL--DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG----RMGECNKILKAMEEGGFIASSNM 445 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~ 445 (671)
.++-.+...+.-.|-. ..+.+++-++. ..++++...+... -...|..+|-+.. .. .|+...
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~-----------f~~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~ 738 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIES-----------FIVSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHY 738 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHH-----------HHHHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHH
Confidence 1111100000000000 00001110000 0111111111000 0123444444443 11 233222
Q ss_pred HHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC----CHHHHHHHHHHHHHcCCCC
Q 042546 446 KSKIAFRLSSAGKK---D---EANEFMDHMEASGSDVGDKMWVSLIKGHCV----AG----DLDKAADCFQKMVEKEGTS 511 (671)
Q Consensus 446 ~~~li~~~~~~g~~---~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g----~~~~a~~~~~~m~~~~g~~ 511 (671)
..++..-.-+.+.. | -|.+.+-.-.. ...+..+|-.++..|.+ .| +...|...+....+ . ..
T Consensus 739 l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~-L-~a 814 (1238)
T KOG1127|consen 739 LIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS-L-CA 814 (1238)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH-H-hh
Confidence 22222212222222 1 11111111111 12234444444443332 11 22345555555544 1 12
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH-H
Q 042546 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-PF-I 589 (671)
Q Consensus 512 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t~-~ 589 (671)
-+..+|++|- ....-|.+.-|..-|-.-.. ..+....+|.-+--.+.+..+++-|...|...+. +.|+.. .+ .
T Consensus 815 nn~~~WnaLG-Vlsg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS--LdP~nl~~WlG 889 (1238)
T KOG1127|consen 815 NNEGLWNALG-VLSGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS--LDPLNLVQWLG 889 (1238)
T ss_pred ccHHHHHHHH-Hhhccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhh--cCchhhHHHHH
Confidence 2444555443 33555777777766655432 3344556777777777888888888888888775 345432 22 2
Q ss_pred HHH--HhcCChHHHHHHHHH-----hhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 590 KYV--SKSGTSDDAIAFLKG-----MTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 590 ~~l--~~~g~~~~A~~~~~~-----m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
..+ ...|+.-++..+|.. +.++..++..-|-+........|+.++-..-.++++
T Consensus 890 ~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 890 EALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKIS 950 (1238)
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhh
Confidence 333 356777777777765 222344677777776667777787776555544443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0058 Score=47.87 Aligned_cols=92 Identities=15% Similarity=0.107 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...... ..+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344445555666666666666665442 2233455555555666666666666666655443 22334455555555555
Q ss_pred CCHHHHHHHHHHHH
Q 042546 492 GDLDKAADCFQKMV 505 (671)
Q Consensus 492 g~~~~a~~~~~~m~ 505 (671)
|+.++|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666665555543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0065 Score=59.15 Aligned_cols=129 Identities=7% Similarity=0.079 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFR-LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
+|..++...-+.+.++.|..+|.+..+.+ ..+...|-..... |...++.+.|.++|+...+. +..+...|..-++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666555332 1222333333333 22234444455555555443 233444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAG---YAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.+.++.+.|..+|++... . +.++. ..|...++-=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~-~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAIS-S-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCC-T-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHH-h-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555544 1 22111 3455555554555555555555555543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.01 Score=49.17 Aligned_cols=97 Identities=14% Similarity=0.030 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----H---HH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----D---PF 588 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~---t~ 588 (671)
+..+...+.+.|++++|.+.|..+.....-.| ....+..+...+.+.|++++|.+.++.+.... |+. . ..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHH
Confidence 34444555555666666666665554321111 12233445555555566666666655554321 111 0 11
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCC
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPS 615 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~ 615 (671)
...+.+.|+.++|...++++....+.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 233344555555555555555544333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0096 Score=57.94 Aligned_cols=131 Identities=8% Similarity=-0.009 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASG-SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 522 (671)
.+|..++...-+.+..+.|.++|.+..+.+ +..++....+++. |...++.+.|.++|+...+. +..+...|..-++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467888888888888999999999988543 2233333333433 33456777799999988873 4556677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 523 TYCSKNRAIDACKFVHNCVREYDLKPWH---TTYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
.+.+.|+.+.|..+|++.... +.++. ..|...++-=.+.|+++.+.++.+++.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888889999999999988753 33332 48888888888889999998888888763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.031 Score=46.29 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGF--IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD--VGDKMWVSLIK 486 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~ 486 (671)
+..+...+.+.|++++|.+.|+.+.+..- ......+..+...+.+.|++++|.+.|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444555566666666666666654320 011234444555566666666666666665543211 11234444555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+.+.|+.++|.+.++++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHhCChHHHHHHHHHHHH
Confidence 55556666666666665554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.014 Score=48.56 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=47.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 508 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
....|+..+..+++.+|+..|++..|.++.+...++++++-+..+|..|+.-...
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 5667899999999999999999999999999999999988888999998875443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.006 Score=57.19 Aligned_cols=87 Identities=16% Similarity=0.115 Sum_probs=60.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 042546 560 LLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEA 635 (671)
Q Consensus 560 ~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A 635 (671)
..+.+++++|++.|.+.++ +.|...+| ..+|++.|.++.|++-.+..+.-++.....|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456777777777777775 45655554 56677777777777777777766666667777777777777777777
Q ss_pred HHHHHhchHhhhc
Q 042546 636 QDLLSKCPRYVRN 648 (671)
Q Consensus 636 ~~~~~~m~~~~~~ 648 (671)
.+.|++..+--+.
T Consensus 169 ~~aykKaLeldP~ 181 (304)
T KOG0553|consen 169 IEAYKKALELDPD 181 (304)
T ss_pred HHHHHhhhccCCC
Confidence 7777775543333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.016 Score=45.31 Aligned_cols=90 Identities=16% Similarity=0.136 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 042546 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527 (671)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 527 (671)
.+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.+.++...+ .. ..+..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALE-LD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC-CcchhHHHHHHHHHHHH
Confidence 34444555555555555555554432 12223444445555555555555555555443 21 11223444444445555
Q ss_pred CCHHHHHHHHHHH
Q 042546 528 NRAIDACKFVHNC 540 (671)
Q Consensus 528 g~~~~A~~~~~~m 540 (671)
|+.++|...+...
T Consensus 82 ~~~~~a~~~~~~~ 94 (100)
T cd00189 82 GKYEEALEAYEKA 94 (100)
T ss_pred HhHHHHHHHHHHH
Confidence 5555555555444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.34 Score=44.58 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=39.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (671)
.|.+++|.++++...+ .. +.|.+++--=+...-..|+--+|.+-+....++ +.-|...|.-+-..|...|++++|.
T Consensus 99 ~~~~~~A~e~y~~lL~-dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLE-DD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred hhchhhHHHHHHHHhc-cC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 3455555555555544 22 233344433333333344444555555544442 3445555555555555555555555
Q ss_pred HHHHHHH
Q 042546 571 SLLCLMK 577 (671)
Q Consensus 571 ~l~~~m~ 577 (671)
-.++++.
T Consensus 175 fClEE~l 181 (289)
T KOG3060|consen 175 FCLEELL 181 (289)
T ss_pred HHHHHHH
Confidence 5555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.17 Score=52.46 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 042546 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-DPFIKYV 592 (671)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~t~~~~l 592 (671)
..+.-.+..-+.+...+.-|-++|..|-.. .++++.....++|++|..+-++..+ +.||. ..+...+
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWL 814 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHh
Confidence 334444444455566777788888887532 2466777788888888888887664 34554 2233444
Q ss_pred HhcCChHHHH
Q 042546 593 SKSGTSDDAI 602 (671)
Q Consensus 593 ~~~g~~~~A~ 602 (671)
+...+++||.
T Consensus 815 AE~DrFeEAq 824 (1081)
T KOG1538|consen 815 AENDRFEEAQ 824 (1081)
T ss_pred hhhhhHHHHH
Confidence 4444444433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.79 Score=46.96 Aligned_cols=205 Identities=13% Similarity=0.068 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAG---KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 501 (671)
+++..+++.....-...+..+|..+.+-=-..- ..+.....++++...-..--..+|...|..-.+..-++.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455555555443222233334443332211111 25555666666654332223456888888888889999999999
Q ss_pred HHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042546 502 QKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580 (671)
Q Consensus 502 ~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 580 (671)
.+.++ .+..+ ++.++++++.-|| .++.+-|.++|+--.+++|-.| .--...++-+.+.++-..|..+|++....+
T Consensus 390 ~kaR~-~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 390 KKARE-DKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHhh-ccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999 77776 8889999999887 4888999999998877665433 333567777888898899999999999887
Q ss_pred CCCCHH--HH---HHHHHhcCChHHHHHHHHHhhhCCC----CCHHHHHHHHHHHHHcCCHH
Q 042546 581 FPPFVD--PF---IKYVSKSGTSDDAIAFLKGMTSKRF----PSMSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 581 ~~p~~~--t~---~~~l~~~g~~~~A~~~~~~m~~~~~----p~~~~~~~l~~~~~~~g~~~ 633 (671)
+.|+.. .+ +..=+..|++..+.++-+++....+ +...+-..+++-|.-.+.+.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 777753 23 4444788999988888777665332 11122334455555555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.64 Score=45.92 Aligned_cols=108 Identities=14% Similarity=0.044 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKN 559 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 559 (671)
+.+..|.-+...|+...|.++-.+ ..+ ||..-|...|.+|+..+++++-.++-.. ++ .++-|-.++.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK-----sPIGyepFv~~ 246 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS--KK-----SPIGYEPFVEA 246 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC-----CCCChHHHHHH
Confidence 344455566667776666655433 333 6777777777777777777776654332 11 23566677777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHH
Q 042546 560 LLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLK 606 (671)
Q Consensus 560 ~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~ 606 (671)
|.+.|+..+|.....+ -|+ ..-+..|.++|++.+|.+.-.
T Consensus 247 ~~~~~~~~eA~~yI~k------~~~-~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK------IPD-EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHCCCHHHHHHHHHh------CCh-HHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777776665 223 555677777777777766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.13 Score=43.98 Aligned_cols=90 Identities=11% Similarity=0.084 Sum_probs=60.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH----HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 042546 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV----SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR 630 (671)
Q Consensus 555 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l----~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g 630 (671)
.+-..+.+.|++++|.++|+-+.. +.|....+.-.| -..|++++|+..+.......+.|+..+-.+..++.+.|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence 344445667777777777777664 345554443222 35677777887777777766667777777777888888
Q ss_pred CHHHHHHHHHhchHhh
Q 042546 631 RHSEAQDLLSKCPRYV 646 (671)
Q Consensus 631 ~~~~A~~~~~~m~~~~ 646 (671)
+.+.|.+-|+......
T Consensus 118 ~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIKALKAVVRIC 133 (157)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 8888888877765554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0075 Score=44.14 Aligned_cols=63 Identities=17% Similarity=0.262 Sum_probs=39.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 484 (671)
.+.|++++|.++|+.+.+.. +-+...+..+..+|.+.|++++|.++++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 35567777777777766554 335666666777777777777777777776665 4554444444
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0074 Score=43.71 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=45.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 590 ~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
..+.+.|++++|...|+.+.+..+-+...+..+..++.+.|++++|..+|++..+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45567888888888888888877778888888888888999999999888887543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.041 Score=55.66 Aligned_cols=100 Identities=9% Similarity=-0.040 Sum_probs=79.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (671)
..+...|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+.. ..+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 44567899999999999998765 4567788888899999999999999999998764 335677888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHH
Q 042546 496 KAADCFQKMVEKEGTSHAGYAIDLL 520 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~~~~~~l 520 (671)
+|...|++..+ +.|+.......
T Consensus 88 eA~~~~~~al~---l~P~~~~~~~~ 109 (356)
T PLN03088 88 TAKAALEKGAS---LAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHH
Confidence 99999999876 34444333333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.28 Score=47.91 Aligned_cols=202 Identities=13% Similarity=0.096 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGF---IAS--SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL 484 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 484 (671)
.|......|-..|++++|.+.|.+..+... .+. ...|......|.+. ++++|.+.+++ .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~---------------A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK---------------A 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH---------------H
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH---------------H
Confidence 366667777788888888888876543110 011 11233333333222 55555555544 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH
Q 042546 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK-NRAIDACKFVHNCVREYDLKPW----HTTYEELIKN 559 (671)
Q Consensus 485 i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~ 559 (671)
+..|...|++..|-+.+..+-+ .|-.. |++++|.+.|++..+-+...-. ...+..+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~~lA~----------------~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKELAE----------------IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH----------------HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHH----------------HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 4456666666666665555433 34444 6677777776665432111111 1244555666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH------HHH-HHHH--HhcCChHHHHHHHHHhhhCCC--CC---HHHHHHHHHH
Q 042546 560 LLVQRGFKDALSLLCLMKDHGFPPFV------DPF-IKYV--SKSGTSDDAIAFLKGMTSKRF--PS---MSVVLCLFAA 625 (671)
Q Consensus 560 ~~~~g~~~~A~~l~~~m~~~~~~p~~------~t~-~~~l--~~~g~~~~A~~~~~~m~~~~~--p~---~~~~~~l~~~ 625 (671)
+.+.|++++|.++|++....-...+. ..+ ..++ ...|+...|.+.+++.....+ .+ ......|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 77788888888888877654332211 112 2222 356778888888887765432 22 2334455666
Q ss_pred HHH--cCCHHHHHHHHHhch
Q 042546 626 FFQ--ARRHSEAQDLLSKCP 643 (671)
Q Consensus 626 ~~~--~g~~~~A~~~~~~m~ 643 (671)
+-. ...+++|..-|+.+.
T Consensus 245 ~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTSS
T ss_pred HHhCCHHHHHHHHHHHcccC
Confidence 644 234666666666655
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.073 Score=43.80 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=45.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHhcCChHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHHcC
Q 042546 559 NLLVQRGFKDALSLLCLMKDHGFPPFVD-----PFIKYVSKSGTSDDAIAFLKGMTSKRFP---SMSVVLCLFAAFFQAR 630 (671)
Q Consensus 559 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~-----t~~~~l~~~g~~~~A~~~~~~m~~~~~p---~~~~~~~l~~~~~~~g 630 (671)
++-..|+.++|+.+|++....|...... .+.+.|...|+.++|..++++.....+. +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 4445666666666666666665544321 1244455666666666666666553321 2223333344566667
Q ss_pred CHHHHHHHHHh
Q 042546 631 RHSEAQDLLSK 641 (671)
Q Consensus 631 ~~~~A~~~~~~ 641 (671)
+.++|.+.+-.
T Consensus 90 r~~eAl~~~l~ 100 (120)
T PF12688_consen 90 RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHH
Confidence 77766666544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.14 Score=45.82 Aligned_cols=91 Identities=11% Similarity=-0.022 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIAS--SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
..+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3567777778888999999999998876432222 3577888888888999999999988887653 224455666666
Q ss_pred HHHhcCCHHHHHHH
Q 042546 487 GHCVAGDLDKAADC 500 (671)
Q Consensus 487 ~~~~~g~~~~a~~~ 500 (671)
.+...|+...+..-
T Consensus 115 ~~~~~g~~~~a~~~ 128 (172)
T PRK02603 115 IYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHcCChHhHhhC
Confidence 77777765544433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.93 Score=45.46 Aligned_cols=458 Identities=9% Similarity=0.069 Sum_probs=237.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HHcCC
Q 042546 141 ESSPDEARRFFNWVLEKESERLS----SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF--EKEGL 214 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~----~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~g~ 214 (671)
.+++.+|.++|.++-+...-.|. .+.-+.+|++|..++ .+.....+.+..+. .| ...|..+..+. -+.+.
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhh
Confidence 68999999999998763322232 344667888887654 45555555555443 22 34455555543 35566
Q ss_pred hhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 042546 215 ESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294 (671)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~ 294 (671)
.+.|.................+....+...... +-+.+.....++.. |++.+++.+++++...
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d---------------f~l~~i~a~sLIe~--g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSD---------------FFLDEIEAHSLIET--GRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhH---------------HHHHHHHHHHHHhc--CCcchHHHHHHHHHHH
Confidence 666666655544432211111111100000000 00111111222222 7777777777776531
Q ss_pred ---CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 042546 295 ---GFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK---GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368 (671)
Q Consensus 295 ---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 368 (671)
.-..-|+.+||.++-.+++. .|-++++. .+-|| |.-||-.|-+. ...++.-.=..+.
T Consensus 158 llkrE~~w~~d~yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~ 220 (549)
T PF07079_consen 158 LLKRECEWNSDMYDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKK------IHAFDQRPYEKFI 220 (549)
T ss_pred HhhhhhcccHHHHHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHH------HHHHhhchHHhhC
Confidence 11235777777766665543 33333321 22232 23333333322 1111111111244
Q ss_pred CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCH
Q 042546 369 PSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA-MLNSVLKALISVGRMGECNKILKAMEEGGF----IASS 443 (671)
Q Consensus 369 p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~~ 443 (671)
|.......++....-....-.....++++.....-+.|+-. +...++..+.+ +.+++..+-+.+....+ +.=.
T Consensus 221 peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li 298 (549)
T PF07079_consen 221 PEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELI 298 (549)
T ss_pred cHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHH
Confidence 55555555555554444333445566666666666666643 33444444444 55555555554443221 1224
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW-------VSLIKGHCV----AGDLDKAADCFQKMVEKEGTSH 512 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-------~~li~~~~~----~g~~~~a~~~~~~m~~~~g~~p 512 (671)
.++..++....+.++.++|.+.+.-+..- .|+...- ..+-+..|. .-+...=+.+|+.... ..+.-
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs-~DiDr 375 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQS-YDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHh-hcccH
Confidence 57788888889999999999888877653 3332211 111122221 1122333445555544 33321
Q ss_pred CHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCC
Q 042546 513 AGYAIDLLVN---TYCSKNR-AIDACKFVHNCVREYDLKPWHTTYEELI----KNLLV---QRGFKDALSLLCLMKDHGF 581 (671)
Q Consensus 513 ~~~~~~~li~---~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~li----~~~~~---~g~~~~A~~l~~~m~~~~~ 581 (671)
-. .-.-|+. -+-+.|. -+.|.++++.+..- ..-|...-|.+. .+|.+ ...+.+-+.+-+-+.+.|+
T Consensus 376 qQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 376 QQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred HH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 11 1112222 2445565 77899999888752 222333333222 23433 2334444555555567788
Q ss_pred CCCHH---HHH------HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 582 PPFVD---PFI------KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 582 ~p~~~---t~~------~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
.|-.. -+. ..+-..|++.++.-+-..+.+ ..|++.+|..+.-.+....+++||.+++++.|.+
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~-iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n 524 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK-IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPN 524 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCc
Confidence 77542 122 233468999888766555444 4579999999999999999999999999999963
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.89 Score=44.91 Aligned_cols=111 Identities=14% Similarity=0.128 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK 594 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~ 594 (671)
.+.+..|.-+...|+...|.++-.+. .+ |+..-|-..+.+|+..++|++-.++... ..-+-....|+..|.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 34555566677789988887776554 34 8889999999999999999988887543 2223344778999999
Q ss_pred cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 042546 595 SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 595 ~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 642 (671)
.|...+|..+...+. +..-+..|.+.|++.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k~~---------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPKIP---------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHhCC---------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999988732 245578889999999997765543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.65 Score=44.04 Aligned_cols=175 Identities=15% Similarity=0.090 Sum_probs=94.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-
Q 042546 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKM--WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS- 526 (671)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~- 526 (671)
...+.+.|++++|.+.|+++...-..+.... .-.+..++.+.+++++|...+++..+...-.|+. -|...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhh
Confidence 3344556777777777777665432221111 1234455666777777777777766633333333 22222222221
Q ss_pred -c---------------CC---HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 042546 527 -K---------------NR---AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP 587 (671)
Q Consensus 527 -~---------------g~---~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t 587 (671)
. .+ ..+|...|+++.++ |=...-..+|.+.+..+.+. +.-....
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~-la~~e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDR-LAKYELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHH-HHHHHHH
Confidence 0 11 22344444444443 22223344444433333211 0001122
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHhc
Q 042546 588 FIKYVSKSGTSDDAIAFLKGMTSKRF---PSMSVVLCLFAAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 588 ~~~~l~~~g~~~~A~~~~~~m~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 642 (671)
....|-+.|.+..|..-++.+.+.-+ ........++.+|.+.|..++|.......
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34557788999999999999988543 34556677889999999999998877654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.03 Score=56.67 Aligned_cols=94 Identities=11% Similarity=-0.030 Sum_probs=59.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH---HHHHHhcCC
Q 042546 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-PF---IKYVSKSGT 597 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t~---~~~l~~~g~ 597 (671)
..+...|++++|.+.|.+.... -.-+...|..+..+|.+.|++++|+..+++..+. .|+.. .+ ..+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCC
Confidence 3455667777888777777653 2234556666667777777777777777777653 34432 22 344456777
Q ss_pred hHHHHHHHHHhhhCCCCCHHHH
Q 042546 598 SDDAIAFLKGMTSKRFPSMSVV 619 (671)
Q Consensus 598 ~~~A~~~~~~m~~~~~p~~~~~ 619 (671)
+++|+..|++.....+.+....
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFT 107 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHH
Confidence 7777777777776554444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.41 Score=41.76 Aligned_cols=126 Identities=14% Similarity=0.036 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCCCHHHH
Q 042546 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY--DLKPWHTTY 553 (671)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~p~~~~~ 553 (671)
|++..--.|-.+....|+..+|...|++... --+.-|....-.+.++....++...|...++.+.+-. +-.||. .
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 4444444444555555555555555555543 2233344444444444444555555555555444321 112222 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHhcCChHHHHHHHH
Q 042546 554 EELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD---PFIKYVSKSGTSDDAIAFLK 606 (671)
Q Consensus 554 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~---t~~~~l~~~g~~~~A~~~~~ 606 (671)
-.+...|...|+..+|..-|+..... .|+.. -|...+.+.|+.++|..-+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 22334444455555555555544432 22221 12344445555444444333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.15 Score=46.91 Aligned_cols=163 Identities=12% Similarity=0.007 Sum_probs=110.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 042546 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359 (671)
Q Consensus 280 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 359 (671)
..+...+.|+.- -....+.++..+.-.|.+.-...++.+..++.-+-++.....+.+.-.+.|+.+.|...|
T Consensus 164 ~~ESsv~lW~KR--------l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf 235 (366)
T KOG2796|consen 164 AEESSIRLWRKR--------LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYF 235 (366)
T ss_pred chhhHHHHHHHH--------HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHH
Confidence 335556666532 235667778888888888889999999988766667888888999899999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042546 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439 (671)
Q Consensus 360 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 439 (671)
++..+..-+.|..+.+.++ ....-..|.-.+++.+|...|.+....+
T Consensus 236 ~~vek~~~kL~~~q~~~~V--------------------------------~~n~a~i~lg~nn~a~a~r~~~~i~~~D- 282 (366)
T KOG2796|consen 236 QDVEKVTQKLDGLQGKIMV--------------------------------LMNSAFLHLGQNNFAEAHRFFTEILRMD- 282 (366)
T ss_pred HHHHHHHhhhhccchhHHH--------------------------------HhhhhhheecccchHHHHHHHhhccccC-
Confidence 9877543333322222221 2222234556678888888888887655
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLI 485 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 485 (671)
..|....|.-.-+..-.|+..+|.+.++.|.+. .|...+-++++
T Consensus 283 ~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 283 PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 445555554444444578999999999999876 45555555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0051 Score=47.40 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=7.6
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 042546 520 LVNTYCSKNRAIDACKFVH 538 (671)
Q Consensus 520 li~~~~~~g~~~~A~~~~~ 538 (671)
+..+|.+.|++++|..+++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3333444444444444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0055 Score=47.21 Aligned_cols=47 Identities=21% Similarity=0.169 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 422 GRMGECNKILKAMEEGGFI-ASSNMKSKIAFRLSSAGKKDEANEFMDH 468 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~ 468 (671)
|+++.|..+|+++.+..-. ++...+-.+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555443210 1223333345555555555555555544
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.6 Score=45.63 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 316 CIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363 (671)
Q Consensus 316 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 363 (671)
++++|..+|++. ...|-..|++++|.+.|.+..
T Consensus 30 ~~e~Aa~~y~~A---------------a~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 30 DYEEAADLYEKA---------------ANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTT-CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---------------HHHHHHHhccchhHHHHHHHH
Confidence 566666655543 344666677777777776654
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.52 Score=40.48 Aligned_cols=93 Identities=8% Similarity=-0.062 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
-.+-.-+...|++++|.++|+.+.... +-+..-|-.|-.++-..|++++|+..|....... +-|...+-.+-.++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 344445567788888888888777654 3455566677777777888888888888877665 34566666677777888
Q ss_pred CCHHHHHHHHHHHHH
Q 042546 492 GDLDKAADCFQKMVE 506 (671)
Q Consensus 492 g~~~~a~~~~~~m~~ 506 (671)
|+.+.|.+-|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888888877766
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.23 Score=44.35 Aligned_cols=91 Identities=13% Similarity=0.125 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHH
Q 042546 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG--DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH-AGYAID 518 (671)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~ 518 (671)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|.+.+++..+ . .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~--~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE-L--NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--CcccHHHHH
Confidence 345677778888889999999999999886543332 35788888889999999999999998876 2 23 345566
Q ss_pred HHHHHHHhcCCHHHHHH
Q 042546 519 LLVNTYCSKNRAIDACK 535 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~ 535 (671)
.+...|...|+...+..
T Consensus 111 ~lg~~~~~~g~~~~a~~ 127 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHHHcCChHhHhh
Confidence 66667777776554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.39 Score=51.01 Aligned_cols=63 Identities=13% Similarity=0.035 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 513 AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
+...|.++.-.+...|++++|...+++... ..|+...|..+...+...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334555554444556777777777776654 345666666666667777777777777766654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.7 Score=44.60 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=112.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcC
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK-MWVSLIKGHCVAG 492 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g 492 (671)
+-.+|.+.++.+.|...|.+.......|+. ..+....+++.+..+...-. .|... -...=...+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhcc
Confidence 445777788999999999887654434332 22344556666655554433 23321 1222255678899
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALS 571 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 571 (671)
++..|...|.++++ .. +-|...|..-.-+|.+.|.+..|.+-.+...+. .|+ ...|.-=..++....++++|++
T Consensus 373 dy~~Av~~YteAIk-r~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIK-RD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred CHHHHHHHHHHHHh-cC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 43 557788999999999999999999887777653 333 3334333344445678889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCC
Q 042546 572 LLCLMKDHGFPPFVDPFIKYVSKSGT 597 (671)
Q Consensus 572 l~~~m~~~~~~p~~~t~~~~l~~~g~ 597 (671)
.|++..+. .|+..-++..|.+|..
T Consensus 448 ay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 448 AYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHhc--CchhHHHHHHHHHHHH
Confidence 99988864 5888788887765543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.14 Score=45.69 Aligned_cols=63 Identities=14% Similarity=-0.006 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIA--SSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
.|..+...+...|++++|...|++.......+ ...+|..+...|...|++++|++.++.....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35555556666677777777777665432111 1235666666666777777777777666543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.67 Score=40.52 Aligned_cols=134 Identities=13% Similarity=0.025 Sum_probs=101.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC
Q 042546 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG---FPPF 584 (671)
Q Consensus 508 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~---~~p~ 584 (671)
....|+...--.|..+..+.|+..+|...|++... .-+.-|....-.+.++....++..+|...++.+.+.. -.||
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 45667777777889999999999999999999875 2355677777778888888999999999999887643 3455
Q ss_pred HH-HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 585 VD-PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 585 ~~-t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
.. .|...|...|+..+|+..|+...+-- |+...-.-....+.++|+.++|..-+..+-
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~y-pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYY-PGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhC-CCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 43 35788999999999999999998854 333333333456788998888765554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.9 Score=48.34 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+...|.++.-.....|++++|...+++... +.|+...|..+...|...|+.++|.+.+.+...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334455544444445666666666666655 224555566666666666666666666655543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.029 Score=41.71 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=49.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHH
Q 042546 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNL 655 (671)
Q Consensus 590 ~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l 655 (671)
..+.+.+++++|.++++.+....|.+...|.....+|.+.|++++|.+.+++..+..++.+.+..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 345677788888888888887777777778888888888888888888888877665555555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.2 Score=42.19 Aligned_cols=74 Identities=9% Similarity=0.084 Sum_probs=51.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGFIASS-NMK---SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
....+.+.|++++|.+.|+.+...- |+. ... -.+..+|-+.+++++|...+++..+....-...-|...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 4444567899999999999998753 332 222 3466788899999999999999987643333344555555544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.092 Score=46.77 Aligned_cols=92 Identities=9% Similarity=-0.003 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 042546 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV--DPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAA 625 (671)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~ 625 (671)
..|..+...+...|++++|+..|++.......|.. .++ ...+.+.|+.++|+..++......+.....+..+...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 34445555555566666666666666543222111 111 2334566777777777766666544445556666666
Q ss_pred HH-------HcCCHHHHHHHHHhc
Q 042546 626 FF-------QARRHSEAQDLLSKC 642 (671)
Q Consensus 626 ~~-------~~g~~~~A~~~~~~m 642 (671)
|. +.|++++|...+++-
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 66 778888776666553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.48 Score=39.03 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=42.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHH
Q 042546 451 FRLSSAGKKDEANEFMDHMEASGSDVG--DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA----GYAIDLLVNTY 524 (671)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~ 524 (671)
.++-..|+.++|..+|++....|.... ...+-.+-+.+...|++++|..++++... .. |+ ......+..++
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~-~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE-EF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HC--CCccccHHHHHHHHHHH
Confidence 344455666666666666655554332 22344455555666666666666665554 11 21 11111122244
Q ss_pred HhcCCHHHHHHHHHHH
Q 042546 525 CSKNRAIDACKFVHNC 540 (671)
Q Consensus 525 ~~~g~~~~A~~~~~~m 540 (671)
...|+.++|.+.+-..
T Consensus 86 ~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEA 101 (120)
T ss_pred HHCCCHHHHHHHHHHH
Confidence 4556666666655443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.031 Score=40.38 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=35.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
..+.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44566677777777777776654 335556666666677777777777777766544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.05 E-value=3 Score=45.66 Aligned_cols=80 Identities=14% Similarity=0.045 Sum_probs=58.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.+++..|+...+.+.++.|-.+-...+-+++ +.|.|+.++|..+++.....+.. |..|...+-..|.+.|+.+++..
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 3789999999998887664443333333332 35789999999999988776655 88899888888888877776665
Q ss_pred HHH
Q 042546 221 LKG 223 (671)
Q Consensus 221 ~~~ 223 (671)
+.+
T Consensus 99 ~Ye 101 (932)
T KOG2053|consen 99 LYE 101 (932)
T ss_pred HHH
Confidence 543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=2.5 Score=44.75 Aligned_cols=239 Identities=13% Similarity=0.022 Sum_probs=129.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCC--------HHHHHHHHHHHHhCC
Q 042546 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSK-GYEME--------METCVKVLGRFSERN 350 (671)
Q Consensus 280 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~--------~~t~~~li~~~~~~g 350 (671)
.+++|.++.+. .|....|..+.....+.-.++.|+..|-+.... |++.- ...-.+=|.+| -|
T Consensus 678 gledA~qfiEd-------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g 748 (1189)
T KOG2041|consen 678 GLEDAIQFIED-------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YG 748 (1189)
T ss_pred chHHHHHHHhc-------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hc
Confidence 34566655542 677788888887777777777777777655432 22110 00111122333 37
Q ss_pred ChHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 351 MVKEAVDLYEFAMACKNKP----SVNCCTFLLRKIVVSKQL-DMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG 425 (671)
Q Consensus 351 ~~~~a~~l~~~m~~~g~~p----~~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 425 (671)
++++|.++|-+|-++.+.. ..--|-.+...+...|.. |.+..+..++.+.+. --+...|......|.++|+.+
T Consensus 749 ~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e 826 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTE 826 (1189)
T ss_pred chhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchH
Confidence 8899999888876543211 111222333333322211 122222222222211 011223556666677777665
Q ss_pred HHHHH------HHHHH--HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 426 ECNKI------LKAME--EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 426 ~A~~~------~~~m~--~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
.-.+. |+++. ...++-|....-.+..++.+.|.-++|.+.|-+-. .|- +.+..|...+++.+|
T Consensus 827 ~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 827 NQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGEA 897 (1189)
T ss_pred hHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHHH
Confidence 43332 22222 12345666677788899999999999988775432 232 345677888888888
Q ss_pred HHHHHHHHHcCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 498 ADCFQKMVEKEGTSHAGYAI--------------DLLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
.++-+...- |.+.|. ---|..+.+.|+.-+|-+++.+|.++
T Consensus 898 velaq~~~l-----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 898 VELAQRFQL-----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHhccc-----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 877654322 222221 12345667788888888888877653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.11 Score=43.12 Aligned_cols=99 Identities=13% Similarity=0.131 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
|..++..+|.++++.|+++....+.+..- |+.++.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 44566777777777777777776665443 2211110 00000 1123345788888888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 525 (671)
+|+.+|++..|.++.+...+..+++.+..+|..|+.=..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 998889999999988888877888888888888887443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.12 Score=48.09 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=66.6
Q ss_pred CCCHHHHHHHHHHHHcc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----------------ChHHHH
Q 042546 298 KHDESSYNAMASVLGRE-----DCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN----------------MVKEAV 356 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----------------~~~~a~ 356 (671)
+.|-.+|-+++..+... +.++-....++.|++.|++.|..+|+.||+.+-+-. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 67888888888887644 567777778899999999999999999999875542 224566
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCccc
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLD 388 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 388 (671)
+++++|..+|+.||..+-..|++++.+-+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 66677776677776666666666666555443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.4 Score=41.09 Aligned_cols=59 Identities=15% Similarity=0.076 Sum_probs=44.5
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhh
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFP---SMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 647 (671)
...|.+.|.+..|..-++.|.+.-+. .....-.|..+|.+.|..++|.+.-.-+..+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 56667899999999999999986432 334566678899999999999887776654433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.1 Score=41.30 Aligned_cols=168 Identities=12% Similarity=0.094 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----
Q 042546 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM---- 480 (671)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---- 480 (671)
+.|...|..-..+|...|++..|+.=++...+.. ..+..+.--+-..+-..|+.+.++...++-.+. .||...
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~ 262 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF 262 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH
Confidence 3455556666677788888888776666555443 344555555666677788888888877777654 455432
Q ss_pred HHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q 042546 481 WVSL---------IKGHCVAGDLDKAADCFQKMVEKEGTSHAG---YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP 548 (671)
Q Consensus 481 ~~~l---------i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 548 (671)
|-.+ +......+++.++.+-.+...+ ..-.... ..+..+-.+|...|++.+|.+...+..+ +.|
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk-~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~ 338 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK-NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDP 338 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCc
Confidence 1111 1123445667777777777665 3322112 2344556677778899999998888874 556
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 549 W-HTTYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 549 ~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
+ ..++.--..+|.-...+++|++=|+...+.
T Consensus 339 ~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 339 DDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 5 777877788888888999999999988764
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.18 Score=47.77 Aligned_cols=96 Identities=13% Similarity=-0.003 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-------hcCChHHHHHHHHHhhhCCCCCHHHHHH
Q 042546 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVS-------KSGTSDDAIAFLKGMTSKRFPSMSVVLC 621 (671)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~-------~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 621 (671)
|...|-.|-..|...|+.+.|..-|....+ +.|+...+..+|+ ......++..+|+++...++.|...-..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 455666666666666666666666665553 3444433322221 1223445666666666666666666666
Q ss_pred HHHHHHHcCCHHHHHHHHHhchHhh
Q 042546 622 LFAAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 622 l~~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
|...+...|++.+|...|+.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6666777777777777777666544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.9 Score=45.14 Aligned_cols=89 Identities=17% Similarity=0.090 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH-----
Q 042546 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT----- 551 (671)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~----- 551 (671)
+..+...+-..+-+...+.-|-++|..|-. ...+++.....+++++|..+-+..++ ..||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe---~~~dVy~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE---FKDDVYMPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc---ccccccchHHH
Confidence 334455555555666677777888877754 24567777778888888888777654 344433
Q ss_pred ------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 552 ------TYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 552 ------~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
-|..--.+|.++|+-.+|.++++++..
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 222333456677777777777777654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.36 Score=41.75 Aligned_cols=56 Identities=16% Similarity=0.177 Sum_probs=48.2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
...+...|++++|....+.+....|.+...|..++.+|.+.|+..+|.+.|+++..
T Consensus 69 ~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 69 AEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44456789999999999999999999999999999999999999999999999765
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.2 Score=47.34 Aligned_cols=101 Identities=13% Similarity=0.041 Sum_probs=76.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
..+.+++.+|...|.+.++.. +-|.+-|..=..+|++.|.++.|++=.+...... .--..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 367788899999998888764 4566777777888999999998888887776542 12346788888888889999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH
Q 042546 498 ADCFQKMVEKEGTSHAGYAIDLLVNT 523 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~~~~~~~li~~ 523 (671)
.+.|++..+ +.|+-.+|-.=+..
T Consensus 169 ~~aykKaLe---ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE---LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc---cCCCcHHHHHHHHH
Confidence 888888755 77887777654443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.081 Score=38.69 Aligned_cols=62 Identities=11% Similarity=0.062 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG-KKDEANEFMDHMEA 471 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 471 (671)
.+|..+-..+...|++++|+..|++..+.. +.+...|..+..+|.+.| ++++|++.+++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345555555666666666666666665543 334455555556666666 46666666655543
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.4 Score=39.46 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK----- 486 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~----- 486 (671)
+.++..+.-.|.+.-....+++..+..-+.++.....|.+.-.+.|+.+.|...|++..+..-..|..+++.++.
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444444455555555555555544344555555566666666666666666665554333334333333322
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.|.-++++..|...+.++.....-.|-..---+|+..| .|+..+|.+.++.|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY--LGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHH--HHHHHHHHHHHHHHhc
Confidence 22333445555555554443122222222222333333 3566666666666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.15 Score=44.20 Aligned_cols=69 Identities=16% Similarity=0.212 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME-----ASGSDVGDKM 480 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~~~ 480 (671)
...++..+...|++++|.++...+.... +-|...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 4556666677777888887777777655 4566777777777777777777777777663 3466666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.16 E-value=1 Score=38.45 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=88.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
...+|..+...+.......+++.+...+ ..+....|.++..|++.+ .++..+.+.. ..+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 4567777777888999999999988776 467788999999998764 3444444442 2344455668888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK-NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
.+.++++.-++.++.. +...++.+... ++.+.|.+++.+-. +...|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~-------~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN-------NPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC-------CHHHHHHHHHHHHc
Confidence 8888888888887754 33344444444 78888888776521 45677777776653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.95 Score=47.70 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=62.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC-CCCHHH---H--HHHHHhcCChH
Q 042546 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIK-NLLVQRGFKDALSLLCLMKDHGF-PPFVDP---F--IKYVSKSGTSD 599 (671)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~-~p~~~t---~--~~~l~~~g~~~ 599 (671)
....+.|.++++.+..+ -|+...|...-. .+...|++++|++.|++...... -|.... | ...+.-.++++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566677777777654 356555543332 23446777777777775542110 010011 1 22234567777
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHH-HHHHHcCCH-------HHHHHHHHhchHh
Q 042546 600 DAIAFLKGMTSKRFPSMSVVLCLF-AAFFQARRH-------SEAQDLLSKCPRY 645 (671)
Q Consensus 600 ~A~~~~~~m~~~~~p~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~m~~~ 645 (671)
+|...|..+.+...-+...|.-+. -++...|+. ++|.++|.+.|..
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 777777777765443444444332 334456666 7777777777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.5 Score=44.14 Aligned_cols=118 Identities=11% Similarity=0.003 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042546 405 VLTDAMLNSVLKALIS-----VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479 (671)
Q Consensus 405 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 479 (671)
.-|..+|-+++..+.. .+.++-....++.|.+-|+..|..+|+.||+.+-+..- .|..+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHHH
Confidence 3344455555544432 24455555555556666666666666665554433211 11111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR-AIDACKFVHNCVR 542 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 542 (671)
.-..++ .|- .+-+-+.+++++|.. .|+.||..+-..|++++++.+- ..+..++.--|.+
T Consensus 128 fQ~~F~-HYP--~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 128 FQKVFL-HYP--QQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHh-hCc--hhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 111111 111 122446778888887 8888888888888888877664 3344455555543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.44 Score=45.61 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASS----NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG----DKMWV 482 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~ 482 (671)
|...+..+.+.|++++|...|+.+.+.- |+. ..+-.+...|...|++++|...|+.+.+.- |+ ...+-
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHHH
Confidence 4444444444566666666666655432 222 244445555555555555555555554331 21 12222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+...+...|+.++|.++|+...+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233334445555555555554444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.07 E-value=8.1 Score=43.99 Aligned_cols=156 Identities=13% Similarity=0.072 Sum_probs=100.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHH
Q 042546 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG----HCVAGDLDK 496 (671)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~----~~~~g~~~~ 496 (671)
.+++++|+.-+.++. ...|.-.++.--++|.+.+|+.++ .|+...+.-+..+ +.....+++
T Consensus 893 L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~ 957 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDE 957 (1265)
T ss_pred HHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccH
Confidence 345566665555443 123334444455677778877776 5666555554444 455677788
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 042546 497 AADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHT--TYEELIKNLLVQRGFKDALSLLC 574 (671)
Q Consensus 497 a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~l~~ 574 (671)
|.-.|+..-+ ..--+.+|-.+|++.+|..+-.++... -|.. +-..|+.-+...++.-+|-++..
T Consensus 958 Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~----~de~~~~a~~L~s~L~e~~kh~eAa~il~ 1023 (1265)
T KOG1920|consen 958 AALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEG----KDELVILAEELVSRLVEQRKHYEAAKILL 1023 (1265)
T ss_pred HHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCC----HHHHHHHHHHHHHHHHHcccchhHHHHHH
Confidence 8777776543 223566788889999998888877531 1222 22567777888888888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhh
Q 042546 575 LMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 575 ~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
+... |..--+..||+...+++|.++.....+
T Consensus 1024 e~~s-----d~~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1024 EYLS-----DPEEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHhc-----CHHHHHHHHhhHhHHHHHHHHHHhccc
Confidence 7642 334557788888899999887665443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.13 Score=37.53 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 042546 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG-DLDKAADCFQKMVE 506 (671)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 506 (671)
..+|..+...+.+.|++++|+..|.+..+.. +-+...|..+-.+|.+.| ++++|.+.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4556666666666666666666666666553 224455666666666666 56666666666544
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.18 Score=37.32 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=39.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
..|.+.+++++|.++++.+.+.+ +.+...|......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667777777777777777664 445566666777777777777777777777665
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.02 E-value=2.2 Score=37.35 Aligned_cols=133 Identities=8% Similarity=0.071 Sum_probs=60.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 042546 322 KVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE 401 (671)
Q Consensus 322 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 401 (671)
+.++.+.+.++.|+...+..+|+.+.+.|++..-. .+...++-||.......+-.+.....+-...+..++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 34444555666666666666666666666544332 23334444444333332222211111112222222222210
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 402 NGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 402 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
.+..++..+...|++-+|.++.+.... .+......++.+-.+.++...=..+|+-..
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 144555666666666666666655431 112222334444445555444444444433
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=95.02 E-value=2.2 Score=39.25 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=33.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPS---MSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~---~~~~~~l~~~~~~~g~~~~A~ 636 (671)
...|-+.|.+..|..-++.+.+.-+.+ ......++.+|.+.|..+.|.
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 566678888888888888888864422 234566788888888877544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.82 E-value=7.1 Score=42.07 Aligned_cols=101 Identities=13% Similarity=0.186 Sum_probs=57.9
Q ss_pred cCCCCCHHHHH-----HHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHcC
Q 042546 330 KGYEMEMETCV-----KVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVS-KQLDMRLFSKVVRVFRENG 403 (671)
Q Consensus 330 ~g~~p~~~t~~-----~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~-~~~~~~~~~~~~~~~~~~~ 403 (671)
-|++.+..-|. .+|+-+...+.+..|+++-..+...-..- ...|.....-+.+. ...|...+..+-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 45555544443 35677777788888888877775321111 44455555445444 333445555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 404 NVLTDAMLNSVLKALISVGRMGECNKILKA 433 (671)
Q Consensus 404 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 433 (671)
. .+...|..+..-.-.+|+.+-|..+++.
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2 3334566666666678888888777654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.69 Score=44.32 Aligned_cols=98 Identities=14% Similarity=0.038 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD----KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH-AGYAID 518 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~ 518 (671)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+.+...-.| ....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555454445567777777777777665 2332 3455666666777777777777777764211111 122233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
.+...|...|+.++|.++|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555667777777777666653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.37 E-value=5.4 Score=38.81 Aligned_cols=218 Identities=10% Similarity=0.059 Sum_probs=127.0
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCH----
Q 042546 419 ISVGRMGECNKILKAMEEGG--FIASS------NMKSKIAFRLSSAGKKDEANEFMDHMEAS--------GSDVGD---- 478 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g--~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~~~~---- 478 (671)
.+.|+.+.|...+.+..... ..|+. ..||.=.+.+.+..++++|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788888888888776532 23332 34454444444443887777766654322 123333
Q ss_pred -HHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 479 -KMWVSLIKGHCVAGDL---DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554 (671)
Q Consensus 479 -~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 554 (671)
.+...++.+|...+.. ++|..+++.+....+-+|. ++..-+..+.+.++.+++.+++.+|... +.-....+.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~--~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~ 159 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPE--VFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcH--HHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHH
Confidence 4567778888877764 4566677777653343343 4545566666689999999999999874 332334455
Q ss_pred HHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHhc------CChHHHHHHHHHhhh--CCCCC
Q 042546 555 ELIKNL---LVQRGFKDALSLLCLMKDHGFPPFVDPF--------IKYVSKS------GTSDDAIAFLKGMTS--KRFPS 615 (671)
Q Consensus 555 ~li~~~---~~~g~~~~A~~l~~~m~~~~~~p~~~t~--------~~~l~~~------g~~~~A~~~~~~m~~--~~~p~ 615 (671)
.++..+ ... ....|...+..+....+.|....+ +-..... ++++....+++.+.. ..+.+
T Consensus 160 ~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls 238 (278)
T PF08631_consen 160 SILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS 238 (278)
T ss_pred HHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence 555554 333 345677777777666666665412 1111121 225556666664444 23344
Q ss_pred HHHHHHH-------HHHHHHcCCHHHHHHHHHh
Q 042546 616 MSVVLCL-------FAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 616 ~~~~~~l-------~~~~~~~g~~~~A~~~~~~ 641 (671)
..+-.++ ...+.+.+++++|.++|+-
T Consensus 239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 4443332 2445668889999988874
|
It is also involved in sporulation []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.35 E-value=6.4 Score=39.54 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGG---FIASSNMKSKIAFRLSS---AGKKDEANEFMDHMEASGSDVGDKMWVSLI 485 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 485 (671)
-.++-+|-...+++...++.+.|...- +.-....--...-++-+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345556888888999999999888631 11122222234445556 888999999988866555577777877776
Q ss_pred HHHHh---------cCCHHHHHHHHHHH
Q 042546 486 KGHCV---------AGDLDKAADCFQKM 504 (671)
Q Consensus 486 ~~~~~---------~g~~~~a~~~~~~m 504 (671)
..|-. ....++|...|.+.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 65532 12355666666655
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.27 E-value=9.4 Score=41.18 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=89.0
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 500 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
+.+.+..+.|..-...+.+--+.-+..-|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+.++.
T Consensus 670 lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks- 743 (829)
T KOG2280|consen 670 LQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS- 743 (829)
T ss_pred HHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-
Confidence 333343334433333445555566677899999988776553 37888888888999999999998888777652
Q ss_pred CCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 580 GFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 580 ~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
+--...|+..|.+.|+.++|.+++-+.... .-.+.+|.+.|++.+|.++--+
T Consensus 744 --PIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 744 --PIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred --CCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 223356889999999999999998755431 1467889999999988876544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.24 E-value=3.5 Score=43.51 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=76.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 042546 421 VGRMGECNKILKAMEEGGFIASSNMKSKIA-FRLSSAGKKDEANEFMDHMEASG---SDVGDKMWVSLIKGHCVAGDLDK 496 (671)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~ 496 (671)
..+.+.|.++++.+.++ -|+...|...- ..+...|++++|.+.|++..... .+.....+--+.-.+.-..++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 45778899999998865 57777775544 34556899999999999754311 12233344445556777888888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHH-HHHhcCCH-------HHHHHHHHHHHH
Q 042546 497 AADCFQKMVEKEGTSHAGYAIDLLVN-TYCSKNRA-------IDACKFVHNCVR 542 (671)
Q Consensus 497 a~~~~~~m~~~~g~~p~~~~~~~li~-~~~~~g~~-------~~A~~~~~~m~~ 542 (671)
|.+.|..+.+.... +..+|.-+.. ++...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 88888888873333 3333333332 24456666 777777776653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.24 E-value=2.6 Score=41.14 Aligned_cols=49 Identities=10% Similarity=0.277 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--C----CChHHHHHHHHHHHhC
Q 042546 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE--R----NMVKEAVDLYEFAMAC 365 (671)
Q Consensus 317 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~----g~~~~a~~l~~~m~~~ 365 (671)
+++...+++.|.+.|++-+..+|-+....... . ....+|..+|+.|++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 45667788888888888888777664433333 2 2456788888888854
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.98 E-value=5.9 Score=37.80 Aligned_cols=143 Identities=16% Similarity=0.073 Sum_probs=81.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK 496 (671)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 496 (671)
.....|++.+|..+|+...... +-+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4466788888888888777654 233455666777888888888888888876543212222222222333444444444
Q ss_pred HHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 497 AADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564 (671)
Q Consensus 497 a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (671)
...+-.+.-. .| |...--.+...|...|+.++|.+.+-.+.++..-.-|...-..|+..+.--|
T Consensus 222 ~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 4444444332 23 4555555666677777777777666666554332333344455555555444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.3 Score=36.70 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 516 AIDLLVNTYCSKNRAIDACKFVHNCVRE---YD-LKPW-HTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~-~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
+|+.+-..|...|++++|...|++..+. .| -.|+ ..++..+-..|...|++++|++.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555544421 11 0111 234455555555666666666665554
|
... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.89 E-value=2.7 Score=43.73 Aligned_cols=167 Identities=10% Similarity=0.116 Sum_probs=85.4
Q ss_pred cChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042546 265 FSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLG 344 (671)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 344 (671)
++...+..-...+.++++++.+....-.--. .-...-.+.++.-+-+.|..+.|+++-.+-..+ ..
T Consensus 261 ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~--~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------Fe 326 (443)
T PF04053_consen 261 LDLSELEFKTAVLRGDFEEVLRMIAASNLLP--NIPKDQGQSIARFLEKKGYPELALQFVTDPDHR------------FE 326 (443)
T ss_dssp --HHHHHHHHHHHTT-HHH-----HHHHTGG--G--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HH
T ss_pred ECHHHHHHHHHHHcCChhhhhhhhhhhhhcc--cCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hH
Confidence 3444444444444577777555543111000 111344667777777777777777765543322 33
Q ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 042546 345 RFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRM 424 (671)
Q Consensus 345 ~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 424 (671)
...+.|+++.|.++-.+. .+...|..|-+...+.|++
T Consensus 327 LAl~lg~L~~A~~~a~~~-------------------------------------------~~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKEL-------------------------------------------DDPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHCT-HHHHHHHCCCC-------------------------------------------STHHHHHHHHHHHHHTTBH
T ss_pred HHHhcCCHHHHHHHHHhc-------------------------------------------CcHHHHHHHHHHHHHcCCH
Confidence 444566666666554322 2333466777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 503 (671)
+-|++.|.+... |..|+-.|.-.|+.+.-.++.+.....|- +|....++...|++++..+++.+
T Consensus 364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777765442 44555666667777766666666665542 45555555556666666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.66 E-value=3.5 Score=34.03 Aligned_cols=139 Identities=12% Similarity=0.120 Sum_probs=69.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 420 SVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAAD 499 (671)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~ 499 (671)
-.|.+++..++..+... ..+..-||.+|.-....-+-+-..++++.+-+ --|. ...|++.....
T Consensus 14 ldG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------hhhcchHHHHH
Confidence 34666677777766665 34455566555554444444444444443322 1111 22333333333
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 500 CFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 500 ~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
.+-.+-. +......-++...+.|+-|.-.+++.++.+ +-.++....-.+..+|.+.|+..++-+++++.-+.
T Consensus 78 C~~~~n~------~se~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 78 CYAKRNK------LSEYVDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHhcc------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3333222 334455566666777777777777777653 23456666667777777777777777777777776
Q ss_pred CCC
Q 042546 580 GFP 582 (671)
Q Consensus 580 ~~~ 582 (671)
|++
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.65 E-value=8.7 Score=38.60 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 448 KIAFRLSSAGKKDEANEFMDHMEASG---SDVGDKMWVSLIKGHCV---AGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
.++-.|....+++...++.+.+...- +.-....---..-++.+ .|+.++|++++..+.. ..-.++..+|..+-
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHHHH
Confidence 44445888888999999998887531 00011111122334445 7888889888888655 45556666776665
Q ss_pred HHH
Q 042546 522 NTY 524 (671)
Q Consensus 522 ~~~ 524 (671)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.31 Score=36.60 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEG----GF-IAS-SNMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
+++.+-..|...|++++|+..|++..+. |- .|+ ..+++.+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4666667777777777777777766532 10 111 3455666666666677776666666543
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.39 E-value=6.3 Score=36.21 Aligned_cols=159 Identities=11% Similarity=0.035 Sum_probs=85.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGF--IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
....+...|++++|.+.|+.+...-- +--....-.++.++-+.|++++|...+++..+.-..-...-+...+.+.+.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34456778999999999999986521 1123455667888999999999999999987653222223344333333322
Q ss_pred CCHHHHH---HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 492 GDLDKAA---DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 492 g~~~~a~---~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
....... .=-....+ -...+..+|.-|=......+|...+..+.++. ...--.+..-|.+.|.+..
T Consensus 91 ~~~~~~~~~~~D~~~~~~------A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l-----a~~e~~ia~~Y~~~~~y~a 159 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRK------AIEEFEELIKRYPNSEYAEEAKKRLAELRNRL-----AEHELYIARFYYKRGKYKA 159 (203)
T ss_dssp HHHHHHH-TT---HHHHH------HHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH-----HHHHHHHHHHHHCTT-HHH
T ss_pred HhCccchhcccChHHHHH------HHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcccHHH
Confidence 1111110 00000000 12244555666666666666666665554420 0111224455777777777
Q ss_pred HHHHHHHHHhCCCCCCH
Q 042546 569 ALSLLCLMKDHGFPPFV 585 (671)
Q Consensus 569 A~~l~~~m~~~~~~p~~ 585 (671)
|..-++.+.+. -|+.
T Consensus 160 A~~r~~~v~~~--yp~t 174 (203)
T PF13525_consen 160 AIIRFQYVIEN--YPDT 174 (203)
T ss_dssp HHHHHHHHHHH--STTS
T ss_pred HHHHHHHHHHH--CCCC
Confidence 77777777654 4444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.38 E-value=3.9 Score=33.75 Aligned_cols=61 Identities=23% Similarity=0.352 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
+..++...+.|+-+.-.++..++.+.+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334444455555555555555554322 3455555555555555555555555555555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.20 E-value=19 Score=41.20 Aligned_cols=132 Identities=15% Similarity=0.119 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 481 WVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV----NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556 (671)
Q Consensus 481 ~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 556 (671)
|.-.+..--+.|.+++|+.++. |+...+..+. +-+...+.+++|.-.|+..-+- .--
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~---------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekA 971 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYK---------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKA 971 (1265)
T ss_pred cHHHHHHHHhcccchhhhheec---------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHH
Confidence 3334444455666666665543 4554544444 4445678888888888765321 135
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 042546 557 IKNLLVQRGFKDALSLLCLMKDHGFPPFV-----DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARR 631 (671)
Q Consensus 557 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~-----~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~ 631 (671)
+.+|..+|+|.+|+.+..++.. .-|. ..++.-+...++.-+|-++..+.... +.--+..|++...
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd-------~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD-------PEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-------HHHHHHHHhhHhH
Confidence 6788889999999999888752 1121 23455666778877777777766553 2233455666667
Q ss_pred HHHHHHHHHh
Q 042546 632 HSEAQDLLSK 641 (671)
Q Consensus 632 ~~~A~~~~~~ 641 (671)
|++|.++-..
T Consensus 1042 ~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1042 WEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHh
Confidence 7777665544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.03 E-value=6.8 Score=37.52 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
|...|-.|-..|...|+.+.|..-|....+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 334444444444444444444444444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.94 E-value=12 Score=37.97 Aligned_cols=130 Identities=11% Similarity=0.011 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HH
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IK 590 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~ 590 (671)
.+|...++.-.+...++.|..+|-+..+..-+.+++..++++|.-++ .|+..-|..+|+.-.. ..||...| +.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHH
Confidence 45677888888888899999999999875327888999999998665 5777889999986543 25776555 55
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHhchHhhh
Q 042546 591 YVSKSGTSDDAIAFLKGMTSKRFPS--MSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647 (671)
Q Consensus 591 ~l~~~g~~~~A~~~~~~m~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 647 (671)
.+...++-+.|..+|+....+...+ ...|..+|+-=..-|+...|..+=+.|.+..+
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 5678899999999999766654333 67899999999999999998888777765443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=2.2 Score=43.49 Aligned_cols=66 Identities=14% Similarity=0.025 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 405 VLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS----NMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 405 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
+.+...++.+-.+|.+.|++++|...|++..+.. |+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4455689999999999999999999999988764 553 46899999999999999999999998875
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.64 E-value=5 Score=41.20 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 482 VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541 (671)
Q Consensus 482 ~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (671)
..+-.++-+.|+.++|.+.+++|.+.....-+..+...|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 345555667788888888888887623333344566778888888888888888888764
|
The molecular function of this protein is uncertain. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=4.9 Score=34.87 Aligned_cols=84 Identities=10% Similarity=-0.051 Sum_probs=68.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 357 (671)
.|++++|..+|.-+..-. .-|..-|..|-..+-..+++++|...|...-..+. -|...+-.+-.++...|+.+.|+.
T Consensus 50 ~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred CCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 499999999999887533 45666788888889999999999999988766543 255556667788999999999999
Q ss_pred HHHHHHh
Q 042546 358 LYEFAMA 364 (671)
Q Consensus 358 l~~~m~~ 364 (671)
.|.....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 9998876
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.37 E-value=6.3 Score=33.56 Aligned_cols=43 Identities=5% Similarity=0.153 Sum_probs=21.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042546 305 NAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348 (671)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 348 (671)
..+|..+.+.+.......+++.+...+. .+...++.++..|++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 3445555555555555555555554442 344455555555544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=92.10 E-value=2.1 Score=43.64 Aligned_cols=65 Identities=14% Similarity=0.031 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG----YAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+.+...|+.+..+|.+.|++++|...|++..+ +.|+. .+|..+..+|.+.|+.++|...+++..+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567889999999999999999999999877 45663 3588899999999999999999999876
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.04 E-value=5 Score=34.66 Aligned_cols=110 Identities=13% Similarity=0.020 Sum_probs=59.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
.+.++.+++..++..+.--..-.|...++...+ +.+.|++++|.++|+++..+ .|....-.+|+..|....+=..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER---APGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHHHcCChH
Confidence 456677777777777754222223333444433 34678888888888887653 2333333445444444332222
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHH
Q 042546 569 ALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIA 603 (671)
Q Consensus 569 A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~ 603 (671)
=...-+++.+.+-.|+...++..+........|..
T Consensus 96 Wr~~A~evle~~~d~~a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 96 WRRYADEVLESGADPDARALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhccccchhh
Confidence 22233445666666777777666655544444444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.93 E-value=3.7 Score=42.69 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
.+.++.-+-+.|..+.|+++-..-.. -.....+.|+++.|.++-++ ..+...|..|-....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 56677777777888888776543321 23344568888888776543 3466788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (671)
.|+++-|++.|.+... |..|+-.|.-.|+.+.-.++-+....+ | -++....++.-.|+.++..
T Consensus 360 ~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~------~~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEER-G------DINIAFQAALLLGDVEECV 422 (443)
T ss_dssp TTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T-------HHHHHHHHHHHT-HHHHH
T ss_pred cCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHc-c------CHHHHHHHHHHcCCHHHHH
Confidence 8888888888887755 666777777788877777666665543 2 2444555555667777777
Q ss_pred HHHHH
Q 042546 571 SLLCL 575 (671)
Q Consensus 571 ~l~~~ 575 (671)
+++.+
T Consensus 423 ~lL~~ 427 (443)
T PF04053_consen 423 DLLIE 427 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=10 Score=38.97 Aligned_cols=145 Identities=12% Similarity=0.071 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 424 MGECNKILKAMEE-GGFIAS-SNMKSKIAFRLSS---------AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 424 ~~~A~~~~~~m~~-~g~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
.+.|..+|.+... ..+.|+ ...|..+..++.. .....+|.++-+...+.+ .-|......+-.+....+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 4567777777662 223343 2333333222221 223455666666666655 446666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHA---GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 569 (671)
+.+.|..+|++... +.|| ...|..++ ..-+|+.++|.+.+++..+....+.........++.|+.++ +++|
T Consensus 353 ~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~--~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKI---HSTDIASLYYYRALV--HFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNN 426 (458)
T ss_pred chhhHHHHHHHHhh---cCCccHHHHHHHHHH--HHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhh
Confidence 77777777777755 3444 22333333 33467777777777775432222222223333344455444 5666
Q ss_pred HHHHHH
Q 042546 570 LSLLCL 575 (671)
Q Consensus 570 ~~l~~~ 575 (671)
++++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 665543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.82 E-value=3.9 Score=40.61 Aligned_cols=51 Identities=8% Similarity=-0.025 Sum_probs=37.8
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHH
Q 042546 310 VLGREDCIDRFWKVLDEMRSKGYEMEM----ETCVKVLGRFSERNMVKEAVDLYEF 361 (671)
Q Consensus 310 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~l~~~ 361 (671)
-+|+.|+....+.+|+...+.|-+ |. ..|..|-++|.-.+++++|++.+..
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~h 80 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTH 80 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhh
Confidence 478889999999999998887743 43 3455566677777788888887653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.68 E-value=14 Score=35.99 Aligned_cols=101 Identities=14% Similarity=0.078 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMG---ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
+...++.+|...+..+ +|..+++.+.... +-...++-.-+..+.+.++.+++.+.+.+|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 4667777777776654 4555666664432 2224455555666667888899999999888652 112344555555
Q ss_pred HH---HhcCCHHHHHHHHHHHHHcCCCCCCH
Q 042546 487 GH---CVAGDLDKAADCFQKMVEKEGTSHAG 514 (671)
Q Consensus 487 ~~---~~~g~~~~a~~~~~~m~~~~g~~p~~ 514 (671)
.+ .... ...|...+..+.. ..+.|..
T Consensus 164 ~i~~l~~~~-~~~a~~~ld~~l~-~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKS-PELAAFCLDYLLL-NRFKSSE 192 (278)
T ss_pred HHHHHHhhC-cHHHHHHHHHHHH-HHhCCCh
Confidence 44 3333 3455555555555 4454444
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.48 Score=30.83 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHH
Q 042546 618 VVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNL 655 (671)
Q Consensus 618 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l 655 (671)
.|..+..+|.+.|++++|.+++++.....++.++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 45556666666666666666666666555555555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.33 E-value=15 Score=35.88 Aligned_cols=93 Identities=11% Similarity=0.164 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCC---
Q 042546 425 GECNKILKAMEEGGF---IASSNMKSKIAFRLSSAGK----KDEANEFMDHMEASGSDVGDK-MWVSLIKGHCVAGD--- 493 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~--- 493 (671)
..|..+|+.|++... .++...+.+|+.. ...+ .+.++.+|+.+.+.|+..+.. -+.+-|-+++....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 456666666665431 2444555555543 2222 345556666666655544322 23333333322211
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 042546 494 LDKAADCFQKMVEKEGTSHAGYAIDLL 520 (671)
Q Consensus 494 ~~~a~~~~~~m~~~~g~~p~~~~~~~l 520 (671)
+.++.++++.+.+ .|+++....|..+
T Consensus 198 v~r~~~l~~~l~~-~~~kik~~~yp~l 223 (297)
T PF13170_consen 198 VARVIELYNALKK-NGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHH-cCCccccccccHH
Confidence 3355666666666 6666665555433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.25 Score=30.04 Aligned_cols=33 Identities=12% Similarity=-0.024 Sum_probs=27.9
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 042546 605 LKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQD 637 (671)
Q Consensus 605 ~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 637 (671)
|++.++..|.+...|..+...|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 455666677899999999999999999999863
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.08 E-value=10 Score=33.28 Aligned_cols=100 Identities=10% Similarity=0.109 Sum_probs=44.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 042546 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509 (671)
Q Consensus 430 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g 509 (671)
..+.+.+.+++|+...|..+|+.+.+.|++.... .+...++-+|.......+-.+.. ....+.++=-.|.++.+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh
Confidence 3344445555555556666666666655543332 23333444444444433322222 11222222222222001
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
..+..+++.+...|++-+|.++....
T Consensus 90 -----~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 -----TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -----hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 02444555555666666666665553
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.05 E-value=2.9 Score=39.98 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA-----SGSDVGDKMWVSL 484 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~l 484 (671)
++..++..+..+|+.+.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 46778888888999999999999888766 56788899999999999999999988887754 5777777666655
Q ss_pred HHH
Q 042546 485 IKG 487 (671)
Q Consensus 485 i~~ 487 (671)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.69 E-value=4.2 Score=38.35 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHH
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSD--VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG-YAIDLLV 521 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li 521 (671)
.|+.-+..| +.|++.+|...|....+.... -....+-.|..++...|++++|..+|..+.+..+-.|-. ...--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444332 455566666666666554310 112234445666666666666666666665533332222 3444455
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhC
Q 042546 522 NTYCSKNRAIDACKFVHNCVREY 544 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~ 544 (671)
.+..+.|+.++|...|+++.+++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 55566677777777777666553
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.66 E-value=12 Score=40.93 Aligned_cols=177 Identities=14% Similarity=0.129 Sum_probs=107.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL----SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
...-|+.+++...++.|..+-+.-. .|..+...+...| -+.|++++|..-|-+-... +.| ..+|.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 4456677777777777776655432 3444444444444 4578888887777654422 122 23455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
-|....+..+-..+++.+.+ .|+. +...-+.|+.+|.+.++.+.-.++.+... +....-|. ...+.-+.+.+-.
T Consensus 406 kfLdaq~IknLt~YLe~L~~-~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~---e~al~Ilr~snyl 479 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHK-KGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDV---ETALEILRKSNYL 479 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHH-cccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeH---HHHHHHHHHhChH
Confidence 66666666677777777777 6664 33445678888888888888777766554 21122233 3455666677777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhh
Q 042546 567 KDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMT 609 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~ 609 (671)
++|..+-..... ....+-..+-..|++++|.++++.+.
T Consensus 480 ~~a~~LA~k~~~-----he~vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 777776655432 22333444566778888888877664
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.60 E-value=21 Score=36.78 Aligned_cols=115 Identities=10% Similarity=0.125 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHH
Q 042546 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD-KMWVSLIKGHCVAGDLDKAADC 500 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~a~~~ 500 (671)
.+..+|.+.-+...+.+ +-|......+-.+....++++.|...|++.... .||. .+|...-..+..+|+.++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45567777777777776 567777777777778888899999999998876 4543 4455555556778999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 501 FQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 501 ~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
+++..+....+.-.......|+.|+. ..+++|.+++.+-
T Consensus 395 i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 433 (458)
T PRK11906 395 IDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKE 433 (458)
T ss_pred HHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhhc
Confidence 99965523344444455556667775 4577777777554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=90.24 E-value=2.8 Score=36.31 Aligned_cols=86 Identities=12% Similarity=0.051 Sum_probs=44.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
-..|++++|..+|.-+...+ .-+..-|..|..+|-..+++++|...|...-..+. -|...+--.-.+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 34566666666666655433 23344445555555556666666666655433221 12222333344555556666666
Q ss_pred HHHHHHHH
Q 042546 499 DCFQKMVE 506 (671)
Q Consensus 499 ~~~~~m~~ 506 (671)
..|+...+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 65555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.20 E-value=11 Score=37.67 Aligned_cols=94 Identities=10% Similarity=-0.018 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
+++.+.-+|.+.+++..|++.-+.....+ ++|....-.=-.+|...|+++.|+..|+++++. .|+...-+.=|..|.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 46777788889999999988888887766 677777777778888888999999999988876 566555554444443
Q ss_pred h-cC-CHHHHHHHHHHHHH
Q 042546 490 V-AG-DLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~-~g-~~~~a~~~~~~m~~ 506 (671)
+ .. ..+...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3 22 23344667777765
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.79 E-value=6.4 Score=39.31 Aligned_cols=136 Identities=12% Similarity=-0.002 Sum_probs=85.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564 (671)
Q Consensus 485 i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (671)
-..|.+.|++..|..-|++...... |.+.-+.++.. ..... -..+++-+..+|.+.+
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~--------------~~~~~~~ee~~-~~~~~--------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE--------------YRRSFDEEEQK-KAEAL--------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh--------------ccccCCHHHHH-HHHHH--------HHHHhhHHHHHHHhhh
Confidence 3567777788887777777655100 11111112211 11111 1235566777788888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHH
Q 042546 565 GFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEA-QDLLS 640 (671)
Q Consensus 565 ~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~ 640 (671)
++.+|++.-.+..+.+ ++|...+ ..++...|.++.|+..|+.+.+..|.|...-+.|+..-.+..+.++. .++|.
T Consensus 272 ~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred hHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877643 2333333 46667788899999999998888777877777777776666655543 66777
Q ss_pred hchH
Q 042546 641 KCPR 644 (671)
Q Consensus 641 ~m~~ 644 (671)
.|-.
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 7654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.74 E-value=9.4 Score=36.08 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=27.5
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh
Q 042546 590 KYVSKSGTSDDAIAFLKGMTSKRF---PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 590 ~~l~~~g~~~~A~~~~~~m~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
..+...|++++|..+|..+.+..+ .-+...--|.....+.|+.++|...|++.....
T Consensus 186 e~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 186 ESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 333445555555555555444221 123444445555555555555555555554433
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.20 E-value=9.5 Score=38.02 Aligned_cols=132 Identities=17% Similarity=0.041 Sum_probs=82.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC-CCCHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAME----EGGF-IASSNMKSKIAFRLSSAGKKDEANEFMDHME----ASGS-DVGDK 479 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~-~~~~~ 479 (671)
.|..|-+.|.-.|+++.|....+.=. +-|- ..-...+..+-+++.-.|+++.|.+.|..-. +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 35556666677788888887665422 1121 1223466777888888889988888877543 2221 12234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVE----KEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (671)
+.-+|-..|.-..++++|...+.+-.. .....-....+.+|-.+|...|..+.|+.+...-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 455667777777778888877664322 01112245667888888888888888887766544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.06 E-value=1.7 Score=41.56 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=48.9
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
...+..+|+.+.+.+.++++....+-+...|..++.+|.+.|+...|+..|+++..
T Consensus 160 ae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 160 AEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 44556788899999999999998888999999999999999999999999999875
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.89 E-value=5.3 Score=38.27 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+.+++..++..=.+ .|+-||..+++.+++.+.+.+++.+|.++...|..
T Consensus 115 ~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34455555555555 55555555555555555555555555555444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.59 E-value=16 Score=32.61 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIAS--SNMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
.+..+..-|++.|+.++|.+.|.++.+....+. ...+-.+|......+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 466667777777777777777777765433332 2344556666666677766666665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.22 E-value=0.89 Score=28.01 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 618 VVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 618 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
+|..|..+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999844
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.18 E-value=42 Score=36.93 Aligned_cols=218 Identities=10% Similarity=0.021 Sum_probs=89.5
Q ss_pred ChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCCh-------HHHHHHHHHHHHcCCCCCHH-
Q 042546 266 SNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI-------DRFWKVLDEMRSKGYEMEME- 337 (671)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~g~~p~~~- 337 (671)
.+.++-.+++| |++++|.++...... .+......+-..+..|....+- +....-|++........|++
T Consensus 114 ~Wa~Iyy~LR~--G~~~~A~~~~~~~~~--~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK 189 (613)
T PF04097_consen 114 IWALIYYCLRC--GDYDEALEVANENRN--QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK 189 (613)
T ss_dssp HHHHHHHHHTT--T-HHHHHHHHHHTGG--GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred cHHHHHHHHhc--CCHHHHHHHHHHhhh--hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 34444444555 999999999855543 3355556777778888775332 34444455544433222432
Q ss_pred --HHHHHHHHHHhCC-Ch-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCC-
Q 042546 338 --TCVKVLGRFSERN-MV-------KEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL- 406 (671)
Q Consensus 338 --t~~~li~~~~~~g-~~-------~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 406 (671)
.|..+ ..|--.. .. |+=+-+-=.+.+.....+... ......+...+.+..+......+
T Consensus 190 ~AvY~il-g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~----------~e~~~L~~LQ~~i~~~Ge~~F~~~ 258 (613)
T PF04097_consen 190 RAVYKIL-GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSA----------YERYTLEDLQKLILKYGESHFNAG 258 (613)
T ss_dssp HHHHHHH-HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSS----------S----HHHHHHHHHHH-GGGCTT-
T ss_pred HHHHHHH-hcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccc----------cccccHHHHHHHHHHhchhhcccc
Confidence 23323 2221111 11 111100001111111100000 00001223333333444444444
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 042546 407 -TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG-SDVGDKMWVSL 484 (671)
Q Consensus 407 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~l 484 (671)
++..| ...+.-+|+++.|.+.+-+ ..+...|.+++...+.-|.-.+-.+... ..+.... -.|...-+..|
T Consensus 259 ~~p~~Y---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arL 330 (613)
T PF04097_consen 259 SNPLLY---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARL 330 (613)
T ss_dssp -----H---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHH
T ss_pred hhHHHH---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHH
Confidence 22223 3445778999999998877 2223456666665555443322222211 2222111 01222567888
Q ss_pred HHHHHhc---CCHHHHHHHHHHHHH
Q 042546 485 IKGHCVA---GDLDKAADCFQKMVE 506 (671)
Q Consensus 485 i~~~~~~---g~~~~a~~~~~~m~~ 506 (671)
|..|++. .+..+|.+.+--+..
T Consensus 331 I~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 331 IGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 8888763 577888888877765
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.71 E-value=0.012 Score=50.84 Aligned_cols=129 Identities=12% Similarity=0.078 Sum_probs=80.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
.+|..+.+.+..+....+++.+...+...+....+.++..|++.+..++..++++. .+..-...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35666677788888888888888766566788888888889888877888877762 22233456677777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 565 (671)
.++++.-++.++.. .. ..+..+...++++.|.+.+.+. ++...|..+++.|...+.
T Consensus 85 l~~~a~~Ly~~~~~-~~---------~al~i~~~~~~~~~a~e~~~~~-------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGN-HD---------EALEILHKLKDYEEAIEYAKKV-------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTT-HT---------TCSSTSSSTHCSCCCTTTGGGC-------SSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHccc-HH---------HHHHHHHHHccHHHHHHHHHhc-------CcHHHHHHHHHHHHhcCc
Confidence 77777777766543 11 1111123345555555333222 345677777777665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.67 E-value=29 Score=33.78 Aligned_cols=224 Identities=13% Similarity=0.065 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh----HHHHHHHHHHHhCCCCCCHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV----KEAVDLYEFAMACKNKPSVNC 373 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~----~~a~~l~~~m~~~g~~p~~~~ 373 (671)
.+|....-..+..+.+.|.. ++...+..+... +|...-...+.++++.|+. +++..++..+... .|+..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 67777777777777777753 344444444432 4666677777778877763 4567777666322 455555
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRL 453 (671)
Q Consensus 374 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 453 (671)
-...+.+++..+........+.+......-..++..+-...+.++++.++ +++...+-.+.+ .+|..+-...+.++
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aL 183 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFAL 183 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 55555555554322211111122222222222344444555555555554 344444444443 23333444444444
Q ss_pred HhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 454 SSAG-KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532 (671)
Q Consensus 454 ~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 532 (671)
.+.+ ....+...+..+.. .+|...-...+.++.+.|+. .|...+-...+ .+ + .....+.+++..|.. +
T Consensus 184 g~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~~---~--~~~~a~~ALg~ig~~-~ 252 (280)
T PRK09687 184 NSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELK-KG---T--VGDLIIEAAGELGDK-T 252 (280)
T ss_pred hcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHc-CC---c--hHHHHHHHHHhcCCH-h
Confidence 4432 12344444444442 34555555556666666653 33333333333 21 1 123445555555553 4
Q ss_pred HHHHHHHHHH
Q 042546 533 ACKFVHNCVR 542 (671)
Q Consensus 533 A~~~~~~m~~ 542 (671)
|...+..+..
T Consensus 253 a~p~L~~l~~ 262 (280)
T PRK09687 253 LLPVLDTLLY 262 (280)
T ss_pred HHHHHHHHHh
Confidence 5555555543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.53 E-value=11 Score=33.75 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CCH----
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK--MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS---HAG---- 514 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~---p~~---- 514 (671)
..+..+..-|++.|+.++|.+.|.++.+....+... .+-.+|......+++..+.....+... .--. ++.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~-~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES-LIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhccchHHHHHHH
Confidence 456778888999999999999999988765544433 366778888888888888888777665 2212 111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
..|..|. +...+++..|-+.|-+...
T Consensus 116 k~~~gL~--~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLA--NLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHH--HHHhchHHHHHHHHHccCc
Confidence 1122222 2345677777777766543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.25 E-value=2.4 Score=27.45 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEG 437 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (671)
+..+...|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555555555555555544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.68 E-value=36 Score=33.97 Aligned_cols=90 Identities=13% Similarity=0.200 Sum_probs=54.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNM--KSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVSLIKGHCVAGDLD 495 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~ 495 (671)
.-.|+.+.|.+-|+.|.. .|...- ...|.-.--+.|..+.|..+-++.-.. -|. .-.+.+.+...|..|+++
T Consensus 131 l~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChH
Confidence 346888888888888874 222211 112222233567777777777766543 232 355677778888888888
Q ss_pred HHHHHHHHHHHcCCCCCC
Q 042546 496 KAADCFQKMVEKEGTSHA 513 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~ 513 (671)
.|+++.+.-+...-+.++
T Consensus 206 ~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 206 GALKLVDAQRAAKVIEKD 223 (531)
T ss_pred HHHHHHHHHHHHHhhchh
Confidence 888887766653334444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.60 E-value=19 Score=30.57 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=24.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
+.|++++|.+.|+.+..++...|- ...--.|+.+|.+.+++++|...+++..+
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345555555555555444322221 12333344555555555555555555543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.49 E-value=31 Score=32.99 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=49.7
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
...|..+|.+.+|..+.+....-.+.+...|-.++..|+..|+--+|.+-++++.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34556899999999999999998888999999999999999999889888888764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.31 E-value=53 Score=35.48 Aligned_cols=56 Identities=18% Similarity=0.046 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 362 (671)
+-|....-.|.+++.+.|.-++|.+.|-+-.. | -..+..|...+++.+|.++-+..
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455566667777777777777766643221 1 13455566666777777665543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.10 E-value=37 Score=33.52 Aligned_cols=198 Identities=13% Similarity=0.078 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH-H---HHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---HH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDH-M---EASG-SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA---GY 515 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~-m---~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~---~~ 515 (671)
.+|..+..+.++.|.+++++..--. | .+.. -..-...|-.+-.++-+..++.+++.+-..-....|..|. ..
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 4566667777777777776553211 1 1100 0001233444555555555555555544433322333331 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHH
Q 042546 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDL----KPWHTTYEELIKNLLVQRGFKDALSLLCLMKD----HGFPPFVDP 587 (671)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p~~~t 587 (671)
...++-.+..-.+.++.+.+.|+...+-..- ......|..|-..|.+..++++|+-+..+..+ .++..-..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 2233445555566788888888776542111 11234777888888888888888766554432 222211111
Q ss_pred H--------HHHHHhcCChHHHHHHHHHhhh-----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 588 F--------IKYVSKSGTSDDAIAFLKGMTS-----KRF-PSMSVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 588 ~--------~~~l~~~g~~~~A~~~~~~m~~-----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
| .-.|...|++.+|.+.-++..+ ++. .-.....++.+.|...|+.|.|..-|++
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 1 2344567888778777776654 111 1233455778889889998888777766
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.69 E-value=41 Score=33.64 Aligned_cols=258 Identities=10% Similarity=-0.040 Sum_probs=145.0
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChH
Q 042546 277 LGDEPKKALIFFRWAEESGFVKHDES--SYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVK 353 (671)
Q Consensus 277 ~~~~~~~A~~~f~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~ 353 (671)
..|+.++|.+-|+.|.. .|... -...|.-.--+.|..+.|.+.-++.-.. -| -.-.+...+...+..|+++
T Consensus 132 ~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 132 LEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred hcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChH
Confidence 35999999999999985 33322 2233333445778888888888877654 33 3567888999999999999
Q ss_pred HHHHHHHHHHhC-CCCCCHHH--HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 354 EAVDLYEFAMAC-KNKPSVNC--CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKI 430 (671)
Q Consensus 354 ~a~~l~~~m~~~-g~~p~~~~--~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 430 (671)
.|+++.+.-+.. -+.++..- -..|+.+-+.+. -.-+...|...
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~----------------------------------ldadp~~Ar~~ 251 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL----------------------------------LDADPASARDD 251 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH----------------------------------hcCChHHHHHH
Confidence 999999987643 23444321 112222211100 01122333333
Q ss_pred HHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 042546 431 LKAMEEGGFIASSNMK-SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509 (671)
Q Consensus 431 ~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g 509 (671)
-.+..+ +.||.+-- -.-..++.+.|++.++-.+++.+-+....|+. +.. -.+.+.|+ .+..-+++..+...
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~l--Y~~ar~gd--ta~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--ALL--YVRARSGD--TALDRLKRAKKLES 323 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HHH--HHHhcCCC--cHHHHHHHHHHHHh
Confidence 322222 23443221 22335566777777777777777666444432 221 12234443 23333333333233
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCH
Q 042546 510 TSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV-QRGFKDALSLLCLMKDHGFPPFV 585 (671)
Q Consensus 510 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~~~~p~~ 585 (671)
++|| ..+--.+..+-...|++..|..--+... ...|....|..|.+--.. .|+-.++.+++.+..+..-.|+.
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 4443 3444455566666777777666555553 256777777766664433 47888888877777766555554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.67 E-value=14 Score=35.80 Aligned_cols=151 Identities=9% Similarity=0.011 Sum_probs=109.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHhcC
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL----IKNLLVQR 564 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l----i~~~~~~g 564 (671)
--.|...+|-..++++.+ ..+.|...+.-.=++|...|+.+.....++++..+ ..||...|.-+ .-++...|
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhc
Confidence 346778888888888886 56778888888889999999999999999998864 45565444332 23445689
Q ss_pred CHHHHHHHHHHHHhCCCCCCH----HHHHHHHHhcCChHHHHHHHHHhhhCCC----CCHHHHHHHHHHHHHcCCHHHHH
Q 042546 565 GFKDALSLLCLMKDHGFPPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKRF----PSMSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 565 ~~~~A~~l~~~m~~~~~~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~~----p~~~~~~~l~~~~~~~g~~~~A~ 636 (671)
-+++|.+.-++..+- .|+. .+...++...|+..++.++..+-...-. .-...|-...-.+...+.++.|+
T Consensus 190 ~y~dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 190 IYDDAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred cchhHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence 999999988887653 3332 2345667788999999999876655211 22344666666777889999999
Q ss_pred HHHHh-chHh
Q 042546 637 DLLSK-CPRY 645 (671)
Q Consensus 637 ~~~~~-m~~~ 645 (671)
++|+. |..+
T Consensus 268 eIyD~ei~k~ 277 (491)
T KOG2610|consen 268 EIYDREIWKR 277 (491)
T ss_pred HHHHHHHHHH
Confidence 99986 5544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=85.61 E-value=35 Score=32.78 Aligned_cols=119 Identities=14% Similarity=0.153 Sum_probs=67.8
Q ss_pred CCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 349 RNMVKEAVDLYEFAMA-CKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRE-NGNVLTDAMLNSVLKALISVGRMGE 426 (671)
Q Consensus 349 ~g~~~~a~~l~~~m~~-~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~ 426 (671)
+..+.+|+++|+...- ..+--|..+...+++......+.......++++.+.. .+..++..+...+|..++..+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445677777764331 2344556666666666555333333344444444443 2345555566666677777777776
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 427 CNKILKAMEEG-GFIASSNMKSKIAFRLSSAGKKDEANEFMD 467 (671)
Q Consensus 427 A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 467 (671)
-.++++.-... +...|...|..+|....+.|+.+-..++.+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 66666655543 444566667777777777776665555544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.45 E-value=25 Score=30.84 Aligned_cols=84 Identities=12% Similarity=0.082 Sum_probs=40.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH----HH--HHHHHhcCChHHHHHHHHHhhhCCC-CCHHHHHHHHHHHHHcCCHH
Q 042546 561 LVQRGFKDALSLLCLMKDHGFPPFVD----PF--IKYVSKSGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 561 ~~~g~~~~A~~l~~~m~~~~~~p~~~----t~--~~~l~~~g~~~~A~~~~~~m~~~~~-p~~~~~~~l~~~~~~~g~~~ 633 (671)
.+.|+...|..-|.+.-...-.|-.. -+ .-+|...|.+++...-.+-+...+. -....-..|.-+-.+.|++.
T Consensus 105 a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a 184 (221)
T COG4649 105 AQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFA 184 (221)
T ss_pred hhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchH
Confidence 34555555555555554333333221 11 1223455666655555554443222 23333445555556666666
Q ss_pred HHHHHHHhchH
Q 042546 634 EAQDLLSKCPR 644 (671)
Q Consensus 634 ~A~~~~~~m~~ 644 (671)
+|.++|.++.+
T Consensus 185 ~A~~~F~qia~ 195 (221)
T COG4649 185 KAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHc
Confidence 66666666543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.06 E-value=68 Score=35.59 Aligned_cols=137 Identities=11% Similarity=0.092 Sum_probs=78.3
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|..-+-+-.. -+.| + .+|.-|....+..+-...++.+.+.|+. +..--+.||.+|.+.++.+...+
T Consensus 381 Kgdf~~A~~qYI~tI~--~le~---s--~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 381 KGDFDEATDQYIETIG--FLEP---S--EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred cCCHHHHHHHHHHHcc--cCCh---H--HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 5888888766644322 1112 2 4778888888888888899999999875 55556789999999988777766
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAE 292 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~ 292 (671)
+.+........-.+ ..+..+.+....-.+..-...+.+. .+..++.++.. -+++++|++.+..++
T Consensus 453 fI~~~~~g~~~fd~----e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ille~-~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 453 FISKCDKGEWFFDV----ETALEILRKSNYLDEAELLATKFKK--HEWVLDILLED-LHNYEEALRYISSLP 517 (933)
T ss_pred HHhcCCCcceeeeH----HHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHHHH-hcCHHHHHHHHhcCC
Confidence 65554422221111 1222222222222222222222221 33333333333 277888888887653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.81 E-value=23 Score=30.02 Aligned_cols=75 Identities=15% Similarity=0.119 Sum_probs=51.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 418 LISVGRMGECNKILKAMEEGG--FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
..+.|++++|.+.|+.+..+- -+-....--.++.+|.+.+++++|...+++..+....--.+-|...+.+++.-.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 456788999999998887642 122334556688888899999999999988887643322345666666655443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.59 E-value=54 Score=34.08 Aligned_cols=178 Identities=16% Similarity=0.155 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 451 (671)
...-++++.++.... .+.++.+..++...| -+...|-.++.+|... .-+.-..+++++.+..+ -|++.-..|..
T Consensus 67 ~~l~~~~~~f~~n~k--~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 67 SCLVTLLTIFGDNHK--NQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred hHHHHHHHHhccchH--HHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 334455555543332 233444444444433 2334566677777766 44566667776666543 23333344444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 042546 452 RLSSAGKKDEANEFMDHMEASGSDV-----GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS 526 (671)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~ 526 (671)
-|-+ ++.+.+..+|.+...+-+.. -...|.-++.. -..+.|....+...+.++.|..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 67777777777665442211 01234444431 1345666666666666555555555666666666777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042546 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560 (671)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (671)
..++++|.+++..+.+. -..|...-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEH--DEKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhh--cchhhhHHHHHHHHH
Confidence 77777777777766542 223444444455443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.47 E-value=49 Score=33.44 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=72.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH---H-----
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY--CSKNRAIDACKFVHNCVREYDLKPWHTTYEEL---I----- 557 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l---i----- 557 (671)
+...|+.++|.+.--...+ . .+ ...+...+++. --.++.+.|...|++-.+ +.|+...-..+ .
T Consensus 179 l~~~~~~~~a~~ea~~ilk-l--d~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILK-L--DA-TNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhcccchhHHHHHHHHHh-c--cc-chhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 3445666666665554443 1 11 11233333322 234566666666665542 33443322111 1
Q ss_pred -----HHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHH-------HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 042546 558 -----KNLLVQRGFKDALSLLCLMKDHGFPPFVD-PFIKYV-------SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFA 624 (671)
Q Consensus 558 -----~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t~~~~l-------~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~ 624 (671)
.-..+.|++.+|.+.|.+.+. +.|+.. +...+| .+.|+.++|+.--+...+.++.-...|..-..
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~ 329 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRAN 329 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 113356777777777777663 444432 222222 35677777777666655543222223333334
Q ss_pred HHHHcCCHHHHHHHHHhch
Q 042546 625 AFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~ 643 (671)
++.-.++|++|.+-+++..
T Consensus 330 c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 330 CHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566777777776643
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.31 E-value=22 Score=29.41 Aligned_cols=87 Identities=14% Similarity=0.019 Sum_probs=45.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHH---HHHHHhcCC
Q 042546 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF---IKYVSKSGT 597 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~t~---~~~l~~~g~ 597 (671)
.+..|+++.|.+.|.+...- .+-+...||.-..++.-.|+.++|++=+++..+..-.-.. ..| ...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 44556666666666665531 2334556666666666666666666655555432111111 111 223345666
Q ss_pred hHHHHHHHHHhhhCC
Q 042546 598 SDDAIAFLKGMTSKR 612 (671)
Q Consensus 598 ~~~A~~~~~~m~~~~ 612 (671)
.+.|..=|+..-..+
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655533
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=84.08 E-value=2.6 Score=25.85 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 042546 446 KSKIAFRLSSAGKKDEANEFMDH 468 (671)
Q Consensus 446 ~~~li~~~~~~g~~~~A~~~~~~ 468 (671)
|+.|...|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555556666666666666555
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.72 E-value=46 Score=32.55 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=18.9
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385 (671)
Q Consensus 348 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 385 (671)
..|+..+|-..++++++. .+.|...++..-+++...|
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G 151 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNG 151 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhcc
Confidence 356667777777776642 2333344444444444444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.45 E-value=39 Score=30.86 Aligned_cols=217 Identities=16% Similarity=0.090 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 422 GRMGECNKILKAMEEGGFI-ASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS-GSDVGDKMWVSLIKGHCVAGDLDKAAD 499 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~ 499 (671)
+....+...+......... .....+......+...+....+...+...... ........+......+...+..+.+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444433211 12455555556666666666666666655431 113334445555555555566666666
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 500 CFQKMVEKEGTSHAGYAIDLLVN-TYCSKNRAIDACKFVHNCVREYDL--KPWHTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 500 ~~~~m~~~~g~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
.+..... ....+. ........ .+...|+.+.|...+..... ... ......+......+...++.++|...+.+.
T Consensus 117 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALA-LDPDPD-LAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHc-CCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 6666554 222221 11111222 45566666666666666532 111 012223333333345566666666666666
Q ss_pred HhCCCCCC-----HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 577 KDHGFPPF-----VDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 577 ~~~~~~p~-----~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
... .++ .......+...+..+.|...+.......+.....+..+...+...|..+++...+.+..
T Consensus 194 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 194 LKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred Hhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 543 222 11223344455566666666666665443333444444444445555666666555543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.32 E-value=24 Score=32.18 Aligned_cols=87 Identities=13% Similarity=0.051 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH-
Q 042546 142 SSPDEARRFFNWVLEKESERLS-SKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLE- 219 (671)
Q Consensus 142 ~~~~~A~~~f~~m~~~~~~~~~-~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~- 219 (671)
|-...|+-=|....... |+ +..||-+---+...|+++.|.+.|+...+....-+-...|.-|.-| -.|+..-|.
T Consensus 79 GL~~LAR~DftQaLai~---P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq~ 154 (297)
T COG4785 79 GLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQD 154 (297)
T ss_pred hHHHHHhhhhhhhhhcC---CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhHH
Confidence 55566666666554422 33 4578888888899999999999999998875433333334444333 345555554
Q ss_pred HHHHHHHcCCCCC
Q 042546 220 KLKGIFATGSIDN 232 (671)
Q Consensus 220 ~~~~~~~~~~~~~ 232 (671)
.+...+...+.++
T Consensus 155 d~~~fYQ~D~~DP 167 (297)
T COG4785 155 DLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHhcCCCCh
Confidence 3444555444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.26 E-value=16 Score=28.75 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 558 (671)
+..+-++.+.. ..+.|+..+..+.+.+|.+.+++..|.++|+.++.|.+.. ...|..+++
T Consensus 28 e~rrglN~l~~-~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFG-YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTT-SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhc-cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 44455555555 5666777777777777777777777777777777664432 225665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.20 E-value=49 Score=31.84 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=26.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
....|+..+|..+|........ -+...--.+..+|...|+++.|..++..+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 3345666666666665554321 122333445555556666666666665544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.45 E-value=37 Score=29.83 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCC
Q 042546 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPS 370 (671)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~ 370 (671)
+...|..-+. +++.+..++|+.-|.++.+.|...= +..---+-....+.|+...|...|.+.-...-.|-
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~ 128 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ 128 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc
Confidence 3344444443 3455667777777777777654321 11122233345567788888888887765444443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.30 E-value=30 Score=28.71 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=47.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCC
Q 042546 417 ALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKM---WVSLIKGHCVAGD 493 (671)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~g~ 493 (671)
+.+..|+++.|++.|.+....- +.....||.-..++--.|+.++|++=+++..+..-...... |.---..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3456677777777776655432 34556677667777777777777766666554211111111 2222223444555
Q ss_pred HHHHHHHHHHHHH
Q 042546 494 LDKAADCFQKMVE 506 (671)
Q Consensus 494 ~~~a~~~~~~m~~ 506 (671)
-+.|..=|+..-+
T Consensus 131 dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 131 DDAARADFEAAAQ 143 (175)
T ss_pred hHHHHHhHHHHHH
Confidence 5666555555544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.21 E-value=34 Score=29.25 Aligned_cols=50 Identities=8% Similarity=0.032 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.++.+++..+++.|.--..-.|...++...+ +...|++++|.++|.++.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLS 72 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhc
Confidence 5566666666666644122222333343333 2356666666666666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.51 E-value=98 Score=34.16 Aligned_cols=218 Identities=12% Similarity=0.027 Sum_probs=90.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-------hHHHHHHHHHHHhCCCCCCHH---H
Q 042546 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM-------VKEAVDLYEFAMACKNKPSVN---C 373 (671)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-------~~~a~~l~~~m~~~g~~p~~~---~ 373 (671)
-=++|--|.|+|++++|.++..+.... .......+...+..|....+ -+....-|+...+.....|.+ .
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~Av 192 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAV 192 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHH
Confidence 345778889999999999999655543 34456677788888876532 245555666655544433433 2
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHCCCCCC
Q 042546 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR-----------MGECNKILKAMEEGGFIAS 442 (671)
Q Consensus 374 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~~~ 442 (671)
|..+ +++...+... ..+..+..-|--+=-.+.+... +++-.+...+.-+..+.+
T Consensus 193 Y~il----g~cD~~~~~~----------~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~- 257 (613)
T PF04097_consen 193 YKIL----GRCDLSRRHL----------PEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA- 257 (613)
T ss_dssp HHHH----HT--CCC-S-----------TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-
T ss_pred HHHH----hcCCccccch----------HHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-
Confidence 2222 2222111000 0011111111111111111111 112222222222222223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 042546 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522 (671)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 522 (671)
....-.....+.-.|++|.|.+.+-+ ..+...|.+.+.+.+..|.-.+-.+... ..+.....-.|...-+..||.
T Consensus 258 ~~~p~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~ 332 (613)
T PF04097_consen 258 GSNPLLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIG 332 (613)
T ss_dssp ------HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHH
Confidence 11111233444558888888888776 2233556666666665544332222211 222210111112255777888
Q ss_pred HHHh---cCCHHHHHHHHHHHHH
Q 042546 523 TYCS---KNRAIDACKFVHNCVR 542 (671)
Q Consensus 523 ~~~~---~g~~~~A~~~~~~m~~ 542 (671)
.|.+ ..+..+|.+.|--+..
T Consensus 333 ~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 333 QYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp HHHHTTTTT-HHHHHHHHHGGGG
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 7776 4567777777776654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 671 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-08 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 5e-09
Identities = 71/500 (14%), Positives = 145/500 (29%), Gaps = 140/500 (28%)
Query: 255 ERQL--RDLNVTFSNDLVK-FVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311
E Q +D+ F + V F + D PK L EE + H ++
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS----KEE---IDH----------II 55
Query: 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL-YEFAMAC----K 366
+D + ++ + SK E V+ +F V+E + + Y+F M+ +
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQ-----EEMVQ---KF-----VEEVLRINYKFLMSPIKTEQ 102
Query: 367 NKPSVNCCTFLLRKIVVSKQLDMRLFSK--VVRV------------FRENGNVLTDAML- 411
+PS+ ++ ++ + D ++F+K V R+ R NVL D +L
Sbjct: 103 RQPSMMTRMYIEQRDRLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160
Query: 412 --NSVLKAL-----------------ISVGRMGECNKILKAME------EGGFIASSNMK 446
+ + +++ +L+ ++ + + + S+
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 447 SKIAFRLSSAGKKDEANEFMDHMEASGS-----DVGDKMWVSLIKGHC----------VA 491
S I R+ S + E + +V + + C V
Sbjct: 221 SNIKLRIHSI--QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 492 GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID----ACK---FVHNCV--- 541
L A + T LL+ R D + +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 542 -----------REYDLKPWHTTYEELIKNL---LVQRGFKDALSLLCLMKDHGFPPFVDP 587
+ + T E + L ++ F LS+ P +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-LSVF--PPSAHIPTILLS 393
Query: 588 FIKYVSKSGTSDDAIAFL--KGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645
I + + L + K+ ++ + S +L K
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-----------PSIYLELKVKLENE 442
Query: 646 VRNHADVLNLLYSKKSGGDS 665
H +++ Y+ DS
Sbjct: 443 YALHRSIVD-HYNIPKTFDS 461
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 3e-08
Identities = 61/477 (12%), Positives = 123/477 (25%), Gaps = 126/477 (26%)
Query: 7 FLLFRNYPRSSLQ-FTGSSYYFQVPFNPNLTLHESLHTLSSLLPTSSHTFYSRFSRLPIC 65
F + +Q F F L + T P+ Y
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKF-----LMSPIKT-EQRQPSMMTRMYIE------Q 115
Query: 66 YSRLINLIDPKNPNF--RNPMICSYSSEPAMEQKESDFTVVSDIFY------K----FSD 113
RL N R + +E + + ++ K
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLR-QALLELRPAKNVLI----DGVLGSGKTWVALDV 170
Query: 114 VNDISKQLELSGVVF--------THEMVLKVLKNL-----------ESSPDEARRFFNWV 154
Q ++ +F + E VL++L+ L + + +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 155 LEKESERLSSKTYN---LMLRIVGVHGLVQEF------------WGLVDVMKKKGYGVAS 199
+ L SK Y L+L V F + D +++
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-------LSA 283
Query: 200 HVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKV---VRSDIWG---DD 253
++ L D ++K + +D + + + S I D
Sbjct: 284 ATTTHISLDHHSMTLTPD--EVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 254 VER--QLRDLNVTFSNDLVKFVVDKLGDEPK------KALIFFR-------------WAE 292
+ + +N +++ ++ L EP L F W +
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 293 ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMV 352
+ + L + +++ K E + +E VK+ E +
Sbjct: 399 VIKSDVMV------VVNKLHKYSLVEKQPK---ESTISIPSIYLELKVKLEN---EYALH 446
Query: 353 KEAVDLYEFAMA-CKNKPSVNC-----CTFL---LRKIVVSKQLDMRLFSKVVRVFR 400
+ VD Y + + + L+ I +++ LF V FR
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT--LFRMVFLDFR 501
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 671 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.8 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.71 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.68 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.67 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.65 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.64 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.63 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.62 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.61 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.61 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.61 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.57 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.56 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.43 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.43 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.41 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.41 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.4 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.4 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.39 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.39 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.39 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.37 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.36 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.35 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.34 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.34 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.33 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.28 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.27 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.26 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.23 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.22 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.21 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.21 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.19 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.19 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.18 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.18 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.16 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.16 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.16 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.15 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.13 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.11 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.1 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.09 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.07 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.03 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.02 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.99 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.98 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.98 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.94 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.93 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.91 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.87 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.87 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.83 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.81 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.81 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.77 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.77 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.7 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.64 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.64 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.64 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.63 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.51 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.51 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.47 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.45 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.44 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.41 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.38 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.37 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.36 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.36 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.34 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.33 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.32 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.32 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.31 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.3 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.29 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.28 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.28 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.27 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.25 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.25 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.24 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.24 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.21 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.2 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.18 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.16 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.15 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.12 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.07 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.06 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.04 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.04 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.04 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.04 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.97 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.97 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.96 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 97.96 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.95 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.95 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.94 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.93 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.92 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.9 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.88 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.88 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.87 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.87 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.86 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.85 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.82 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.82 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.82 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.8 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.8 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.8 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.79 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.78 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.77 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.77 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.72 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.71 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.69 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.69 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.69 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.68 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.68 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.67 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.67 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.58 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.57 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.57 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.55 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.55 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.54 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.54 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.51 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.42 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.42 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.35 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.33 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.3 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.28 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.24 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.21 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.18 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.12 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.1 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.08 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.98 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.92 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.88 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.83 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.79 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.76 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.67 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.65 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.63 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.62 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.59 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.58 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.55 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.48 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.39 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.31 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.26 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.2 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.16 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.14 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.08 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.06 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.64 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.5 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.34 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.32 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.08 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.04 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 94.98 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.94 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.84 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.84 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.49 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.27 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.69 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 92.29 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 91.45 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 91.42 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.37 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.45 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 89.97 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 88.64 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.44 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.18 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.53 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 86.47 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 86.14 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 85.3 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.08 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 84.54 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.93 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 82.29 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 82.19 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 81.43 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.37 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 80.17 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 80.06 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-38 Score=344.22 Aligned_cols=452 Identities=12% Similarity=-0.013 Sum_probs=355.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|+.+|+.+.. ..||..+|+.++.+|.+.|++++|+.+|+++... .++..+++.++.+|.+.|++++|..
T Consensus 97 ~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 171 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALN 171 (597)
T ss_dssp TTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHH
Confidence 5889999999998864 2378888889999999999999999999888643 6788899999999999988887776
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
+.+ +.......... + +.......+.+++
T Consensus 172 ~~~---~~~~~~~~~~~----~---------------------------------------------~~~~~~~~~~~~~ 199 (597)
T 2xpi_A 172 LLG---ETNPFRKDEKN----A---------------------------------------------NKLLMQDGGIKLE 199 (597)
T ss_dssp HHC---SSCTTC-----------------------------------------------------------CCCSSCCHH
T ss_pred HHh---ccCCccccccc----c---------------------------------------------ccccccccccchh
Confidence 543 11111100000 0 0000001222344
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcC-------------------------------------CCCCHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKG-------------------------------------YEMEMETCVKVL 343 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------------------------------~~p~~~t~~~li 343 (671)
..+|+.++.+|.+.|++++|.++|++|.+.+ ..++..+|+.++
T Consensus 200 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKL 279 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHH
Confidence 5556666666666666666666666655542 222233344456
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 042546 344 GRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR 423 (671)
Q Consensus 344 ~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 423 (671)
..|.+.|++++|.++|+++.+. .++..+++.+..++.+.|+.+ .+..+++.+.+.+ +.+..+++.++.+|.+.|+
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFI--DVLAITTKILEID-PYNLDVYPLHLASLHESGE 354 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTC
T ss_pred HHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCC
Confidence 6777888999999999988765 578899999999999988554 5667777776654 3367789999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQK 503 (671)
Q Consensus 424 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 503 (671)
+++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|++
T Consensus 355 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998654 5678999999999999999999999999998754 34688999999999999999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 042546 504 MVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH---- 579 (671)
Q Consensus 504 m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 579 (671)
+.+ . .+.+..+|+.++.+|.+.|++++|.++|+++.+. ...+..+|+.++..|.+.|++++|+++|+++.+.
T Consensus 433 ~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 433 AAR-L-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHH-T-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHH-h-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 987 3 3347789999999999999999999999999874 3457889999999999999999999999999875
Q ss_pred CCCCC--HHH---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHH
Q 042546 580 GFPPF--VDP---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLN 654 (671)
Q Consensus 580 ~~~p~--~~t---~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 654 (671)
+..|+ ..+ +..+|.+.|++++|.++++++.+..+.+..+|..+..+|.+.|++++|.++++++.+..+..+.+..
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 66787 333 3677889999999999999999887789999999999999999999999999999887777777777
Q ss_pred HHHhhh
Q 042546 655 LLYSKK 660 (671)
Q Consensus 655 l~~~m~ 660 (671)
.+..+.
T Consensus 589 ~l~~~~ 594 (597)
T 2xpi_A 589 LLKRAL 594 (597)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 666554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=309.44 Aligned_cols=433 Identities=11% Similarity=-0.026 Sum_probs=343.1
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
+|.+..+...|+.++. +++..|+.++..|.+.|++++|+.+|++|.. ..||..++..+..+|.+.
T Consensus 66 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~-------- 130 (597)
T 2xpi_A 66 DGSFLKERNAQNTDSL-----SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCT-------- 130 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHT--------
T ss_pred cCccCCCCCccccchH-----HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHc--------
Confidence 4677778888988887 8999999999999999999999999999985 468889999999999888
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
|++++|..+|+.+.. .++|
T Consensus 131 ----------------------------------------------------------g~~~~A~~~~~~~~~---~~~~ 149 (597)
T 2xpi_A 131 ----------------------------------------------------------GDYARAKCLLTKEDL---YNRS 149 (597)
T ss_dssp ----------------------------------------------------------TCHHHHHHHHHHTCG---GGTC
T ss_pred ----------------------------------------------------------CcHHHHHHHHHHHhc---cccc
Confidence 566677777776642 2788
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHH-HHc--------------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEM-RSK--------------GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMAC 365 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--------------g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~ 365 (671)
..+|+.++.+|.+.|++++|.++|+++ ... |.+++..+|+.++.+|.+.|++++|+++|++|.+.
T Consensus 150 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 150 SACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999953 222 23446899999999999999999999999999875
Q ss_pred CCCCC-HHHHHHHH--------------------------------------HHHHhcCcccHHHHHHHHHHHHHcCCCC
Q 042546 366 KNKPS-VNCCTFLL--------------------------------------RKIVVSKQLDMRLFSKVVRVFRENGNVL 406 (671)
Q Consensus 366 g~~p~-~~~~~~ll--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (671)
+ |+ ...+..+. ..|.+.| +.+.+.++++.+.+. ++
T Consensus 230 ~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~~~~~--~~ 303 (597)
T 2xpi_A 230 D--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED--ELRRAEDYLSSINGL--EK 303 (597)
T ss_dssp C--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH--HHHHHHHHHHTSTTG--GG
T ss_pred C--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc--hHHHHHHHHHHhhcC--Cc
Confidence 3 43 23333222 2222222 234455566555443 58
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++++++.+.. +.+..+|+.++.
T Consensus 304 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 381 (597)
T 2xpi_A 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGI 381 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 89999999999999999999999999999776 4578899999999999999999999999998654 457889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
.|.+.|++++|.++|+++.+ .. +.+..+|+.++.+|.+.|++++|.++|+++... ...+..+|+.++.+|.+.|++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 457 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSST-MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNI 457 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCH
T ss_pred HHHHhccHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCH
Confidence 99999999999999999987 32 336789999999999999999999999999863 345788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHH---HHHHHHhcCChHHHHHHHHHhhhC-----CCCC--HHHHHHHHHHHHHcCCHHHHH
Q 042546 567 KDALSLLCLMKDHGFPPFVDP---FIKYVSKSGTSDDAIAFLKGMTSK-----RFPS--MSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t---~~~~l~~~g~~~~A~~~~~~m~~~-----~~p~--~~~~~~l~~~~~~~g~~~~A~ 636 (671)
++|.++|+++.+.. +.+..+ +..+|.+.|++++|.++|+++.+. ..|+ ..+|..++.+|.+.|++++|.
T Consensus 458 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 536 (597)
T 2xpi_A 458 LLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536 (597)
T ss_dssp HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999998753 223333 367788999999999999999774 2365 789999999999999999999
Q ss_pred HHHHhchHhh-----------------hccHHHHHHHHhhhcC
Q 042546 637 DLLSKCPRYV-----------------RNHADVLNLLYSKKSG 662 (671)
Q Consensus 637 ~~~~~m~~~~-----------------~~~~~~~~l~~~m~~~ 662 (671)
++++++.+.. +..+++...|.++.+.
T Consensus 537 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999976532 3467777777777653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=280.99 Aligned_cols=205 Identities=15% Similarity=0.138 Sum_probs=160.5
Q ss_pred HHHHHHHHHHcCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC---------hH
Q 042546 284 ALIFFRWAEESGFVKHD-ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNM---------VK 353 (671)
Q Consensus 284 A~~~f~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~---------~~ 353 (671)
+..+++.+.+ .+..+. ...++.+|++|++.|++++|+++|++|.+.|++||..|||+||.+|++.+. ++
T Consensus 9 ~e~L~~~~~~-k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 9 SENLSRKAKK-KAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred HHHHHHHHHH-hcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 4444455543 333333 345777888888888888888888888888888888888888888877654 45
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 354 EAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKA 433 (671)
Q Consensus 354 ~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 433 (671)
+|.++|++|.+. |+.||..|||+||.+|++.|++++|.++|++
T Consensus 88 ~A~~lf~~M~~~-------------------------------------G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 130 (501)
T 4g26_A 88 RGFDIFKQMIVD-------------------------------------KVVPNEATFTNGARLAVAKDDPEMAFDMVKQ 130 (501)
T ss_dssp HHHHHHHHHHHT-------------------------------------TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 566666666654 4555555677778888888999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 042546 434 MEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513 (671)
Q Consensus 434 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~ 513 (671)
|.+.|+.||..|||++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|++ .|..|+
T Consensus 131 M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps 209 (501)
T 4g26_A 131 MKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVS 209 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBC
T ss_pred HHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHHhc
Q 042546 514 GYAIDLLVNTYCSK 527 (671)
Q Consensus 514 ~~~~~~li~~~~~~ 527 (671)
..||+.++..|+..
T Consensus 210 ~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 210 KSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-32 Score=283.10 Aligned_cols=216 Identities=16% Similarity=0.092 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Q 042546 318 DRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396 (671)
Q Consensus 318 ~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 396 (671)
..+..+.+++++++..+. ...++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+..+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~------- 79 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE------- 79 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS-------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh-------
Confidence 456677788888877655 456899999999999999999999999999999999999999999887764331
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042546 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476 (671)
Q Consensus 397 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 476 (671)
..+.+.+++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.|
T Consensus 80 ---------------------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P 138 (501)
T 4g26_A 80 ---------------------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP 138 (501)
T ss_dssp ---------------------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC
T ss_pred ---------------------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Confidence 13345678999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556 (671)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 556 (671)
|..||+++|.+|++.|++++|.++|++|.+ .|+.||..||++||++|++.|++++|.++|++|.+. +..|+..||+.+
T Consensus 139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l 216 (501)
T 4g26_A 139 RLRSYGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMI 216 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHH
T ss_pred ccceehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999999999999985 999999999999
Q ss_pred HHHHHhc
Q 042546 557 IKNLLVQ 563 (671)
Q Consensus 557 i~~~~~~ 563 (671)
+..|+..
T Consensus 217 ~~~F~s~ 223 (501)
T 4g26_A 217 EEWFKSE 223 (501)
T ss_dssp HHHHHSH
T ss_pred HHHHhcC
Confidence 9999864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-22 Score=205.03 Aligned_cols=371 Identities=11% Similarity=0.008 Sum_probs=247.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|+..|+.+.+..+ .+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.
T Consensus 12 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~-------- 80 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER-------- 80 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH--------
T ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC--------
Confidence 3777777777777655322 234555566666777777777777777666542 34556666666666655
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
|++++|.+.|+++.+.. +.+
T Consensus 81 ----------------------------------------------------------g~~~~A~~~~~~al~~~--p~~ 100 (388)
T 1w3b_A 81 ----------------------------------------------------------GQLQEAIEHYRHALRLK--PDF 100 (388)
T ss_dssp ----------------------------------------------------------TCHHHHHHHHHHHHHHC--TTC
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHcC--cch
Confidence 45556666666655422 334
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME-METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 379 (671)
..+|..+...+.+.|++++|.+.|+++.+.. |+ ...+..+...+...|++++|.+.|+++.+. .
T Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~----------- 165 (388)
T 1w3b_A 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--Q----------- 165 (388)
T ss_dssp HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--C-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--C-----------
Confidence 5567777777777777777777777776653 33 445566666677777777777777776632 1
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 459 (671)
+.+..+|+.+...|.+.|++++|...|+++.+.+ +.+...|..+...+...|++
T Consensus 166 -------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 166 -------------------------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp -------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCT
T ss_pred -------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCH
Confidence 1223456667777777778888888887777654 34566777777777778888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHN 539 (671)
Q Consensus 460 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 539 (671)
++|...|++..+.. +.+..++..+...|.+.|++++|.+.|+++.+ .. +.+..+|..+..+|.+.|++++|.+.|++
T Consensus 220 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 220 DRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-LQ-PHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp THHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888777776653 23466777777777788888888888877776 22 22355677777777777888888888877
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHhcCChHHHHHHHHHhhhCCCCC
Q 042546 540 CVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD----PFIKYVSKSGTSDDAIAFLKGMTSKRFPS 615 (671)
Q Consensus 540 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~----t~~~~l~~~g~~~~A~~~~~~m~~~~~p~ 615 (671)
+.+. .+.+..+|..+...+.+.|++++|.+.++++.+. .|+.. .+...+.+.|++++|...++++.+..+.+
T Consensus 297 al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 297 ALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 7763 3456677777777777777888887777777653 34432 22455667777777777777777766666
Q ss_pred HHHHHHHHHHHHHcC
Q 042546 616 MSVVLCLFAAFFQAR 630 (671)
Q Consensus 616 ~~~~~~l~~~~~~~g 630 (671)
...|..+...+.+.|
T Consensus 373 ~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 373 ADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHhHHHHHHHcc
Confidence 677777766666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-22 Score=205.52 Aligned_cols=327 Identities=12% Similarity=0.062 Sum_probs=271.5
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
|+.++|..+++...+.. +.+..+|+.+...|.+.|++++|.+.|+++.+.. +.+..+|..+..++.+.|++++|.+.
T Consensus 47 ~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 123 (388)
T 1w3b_A 47 RRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQA 123 (388)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHH
T ss_pred CCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 67777777777766533 6678899999999999999999999999998763 22466899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
|+++.+. .|+ +...+..+...|...|++++|.+.|+++.+..
T Consensus 124 ~~~al~~--~p~------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 165 (388)
T 1w3b_A 124 YVSALQY--NPD------------------------------------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHH--CTT------------------------------------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHh--CCC------------------------------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9988752 222 22346667778889999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 042546 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518 (671)
Q Consensus 439 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 518 (671)
+.+..+|+.+...|.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...+++..+ .. +.+..++.
T Consensus 166 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~ 241 (388)
T 1w3b_A 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALS-LS-PNHAVVHG 241 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH-HC-TTCHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hC-cCCHHHHH
Confidence 4567899999999999999999999999998865 34577899999999999999999999999977 22 23578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhc
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKS 595 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~ 595 (671)
.+..+|.+.|++++|.+.|+++.+. .+.+..+|..+...+.+.|++++|.+.++++.+.. +++..++ ...+.+.
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc
Confidence 9999999999999999999999863 23356789999999999999999999999998752 2233333 5667899
Q ss_pred CChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHH
Q 042546 596 GTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVL 653 (671)
Q Consensus 596 g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 653 (671)
|++++|...++++.+..+.+...|..+..+|.+.|++++|.+.++++.+..+....+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~ 376 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence 9999999999999998888899999999999999999999999999876555555444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-19 Score=194.74 Aligned_cols=240 Identities=13% Similarity=0.026 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
..++..+...+...|++++|...|+++.+.. |+...|..+...|...|++++|.+.++++.+.. +.+..+|..+...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 4568888899999999999999999998765 448889999999999999999999999998764 3467789999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 567 (671)
+...|++++|...+++..+ .. +.+...+..+...|...|++++|...|+.+... .+.+...|..+...|.+.|+++
T Consensus 314 ~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKE-LD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHH-TC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHhCCHHHHHHHHHHHHH-hC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999987 33 235668888999999999999999999999874 2335678888999999999999
Q ss_pred HHHHHHHHHHhCCCC-CC-------HHHHHHHHHh---cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 042546 568 DALSLLCLMKDHGFP-PF-------VDPFIKYVSK---SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~-p~-------~~t~~~~l~~---~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 636 (671)
+|.+.++++.+.... |+ ...+...+.. .|++++|...++.+....+.+...|..+..+|.+.|++++|.
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 999999988753211 11 1223566678 999999999999999877778899999999999999999999
Q ss_pred HHHHhchHhhhccHHHHH
Q 042546 637 DLLSKCPRYVRNHADVLN 654 (671)
Q Consensus 637 ~~~~~m~~~~~~~~~~~~ 654 (671)
+.+++..+..+..++++.
T Consensus 470 ~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 470 TLFEESADLARTMEEKLQ 487 (514)
T ss_dssp HHHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHhccccHHHHH
Confidence 999998766555444433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-19 Score=186.77 Aligned_cols=309 Identities=7% Similarity=0.014 Sum_probs=239.8
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHH
Q 042546 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRI 241 (671)
Q Consensus 162 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (671)
.++..|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~----------------------------- 73 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAM----------------------------- 73 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHC-----------------------------
Confidence 457789999999999999999999999998763 34677777777777666
Q ss_pred HHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHH
Q 042546 242 CKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFW 321 (671)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 321 (671)
|++++|...|+.+.+.. +.+..+|..+...|.+.|++++|.
T Consensus 74 -------------------------------------g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 114 (450)
T 2y4t_A 74 -------------------------------------GKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDEAE 114 (450)
T ss_dssp -------------------------------------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------------------CCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 56777777777776532 556888999999999999999999
Q ss_pred HHHHHHHHcCCCCC-H---HHHHHHHHH------------HHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 322 KVLDEMRSKGYEME-M---ETCVKVLGR------------FSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385 (671)
Q Consensus 322 ~~~~~m~~~g~~p~-~---~t~~~li~~------------~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 385 (671)
+.|+++.+. .|+ . ..+..+... +.+.|++++|...|+.+.+.
T Consensus 115 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------------------- 172 (450)
T 2y4t_A 115 DDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-------------------- 172 (450)
T ss_dssp HHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------
Confidence 999999875 344 3 566555443 77888888888888887642
Q ss_pred cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEF 465 (671)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 465 (671)
.+.+..++..+..+|.+.|++++|.++|+++.+.. +.+..+|..+...|.+.|++++|.+.
T Consensus 173 ------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 173 ------------------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 12244567788888899999999999999887654 46788899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHHHhcC
Q 042546 466 MDHMEASGSDVGDKMWVSL------------IKGHCVAGDLDKAADCFQKMVEKEGTSHA-----GYAIDLLVNTYCSKN 528 (671)
Q Consensus 466 ~~~m~~~g~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li~~~~~~g 528 (671)
|+++.+.. +.+...+..+ ...|.+.|++++|.+.|+++.+ . .|+ ...+..+..+|.+.|
T Consensus 234 ~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~--~p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 234 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK-T--EPSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-H--CCSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCcchHHHHHHHHHHHHHHHHCC
Confidence 99988653 2234445444 7888899999999999999877 2 333 457788888899999
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588 (671)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~ 588 (671)
++++|...++++... .+.+...|..+..+|...|++++|.+.++++.+ +.|+....
T Consensus 310 ~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~ 365 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQI 365 (450)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHH
T ss_pred CHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHH
Confidence 999999999988763 233678888899999999999999999998886 46665443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.9e-19 Score=184.77 Aligned_cols=308 Identities=12% Similarity=0.049 Sum_probs=204.8
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 377 (671)
+.+...|..+...+.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|...|+++.+.+ |
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p-------- 91 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--M-------- 91 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C--------
Confidence 5567888889999999999999999999988763 3468888999999999999999999999887531 2
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHH---
Q 042546 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASS---NMKSKIAF--- 451 (671)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~--- 451 (671)
.+..++..+..+|.+.|++++|.+.|+++.+.. +.+. ..+..++.
T Consensus 92 ----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 142 (450)
T 2y4t_A 92 ----------------------------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDE 142 (450)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH
T ss_pred ----------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHH
Confidence 123345666666777777777777777776543 2222 44444433
Q ss_pred ---------HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 042546 452 ---------RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522 (671)
Q Consensus 452 ---------~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 522 (671)
.+.+.|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+ . .+.+..++..+..
T Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~ 219 (450)
T 2y4t_A 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASK-L-KNDNTEAFYKIST 219 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH-H-HCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHH
Confidence 3666777777777777776543 34566677777777777777777777777765 2 1234566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----
Q 042546 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL------------IKNLLVQRGFKDALSLLCLMKDHGFPPFVD---- 586 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~---- 586 (671)
+|...|++++|...|+++... .+.+...+..+ ...|.+.|++++|++.|+++.+. .|+..
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~ 295 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTV 295 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHH
Confidence 777777777777777777643 11223333333 56666777777777777777653 34421
Q ss_pred -H---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHH
Q 042546 587 -P---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADV 652 (671)
Q Consensus 587 -t---~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 652 (671)
. +...+.+.|++++|...++++....+.+...|..+..+|.+.|++++|.+.+++..+..+..+.+
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 1 13445667777777777777766555566777777777777777777777777765433333333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-17 Score=174.23 Aligned_cols=398 Identities=11% Similarity=-0.011 Sum_probs=284.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|+..|+.+.+.. ||...|..+..++.+.|++++|+..|+++.+.. +.+..++..+..++.+.|++++|..
T Consensus 19 ~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 699999999999998833 789999999999999999999999999998875 3467889999999999999999998
Q ss_pred HHHHHHcCCCCChH--HHHHHHHHHHHhcC----------------------------------CChhHHHHHHhhcccc
Q 042546 221 LKGIFATGSIDNSI--EKVASRICKVVRSD----------------------------------IWGDDVERQLRDLNVT 264 (671)
Q Consensus 221 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~ 264 (671)
..+........+.. .............. .....+...+......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (514)
T 2gw1_A 95 DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174 (514)
T ss_dssp HHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCC
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHH
Confidence 77655554432221 11111111000000 0000011111111100
Q ss_pred --------c--ChHHHHHHHHHh----CCChHHHHHHHHHHHH-----cCCC-------CCCHHHHHHHHHHHHccCChH
Q 042546 265 --------F--SNDLVKFVVDKL----GDEPKKALIFFRWAEE-----SGFV-------KHDESSYNAMASVLGREDCID 318 (671)
Q Consensus 265 --------~--~~~~~~~~~~~~----~~~~~~A~~~f~~~~~-----~~~~-------~~~~~~~~~li~~~~~~g~~~ 318 (671)
. ....+......+ .|++++|...|+.+.. .... +.+..+|..+...+.+.|+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (514)
T 2gw1_A 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPL 254 (514)
T ss_dssp CCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHH
Confidence 0 111111111111 4899999999999875 2111 234567888888999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 042546 319 RFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRV 398 (671)
Q Consensus 319 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 398 (671)
+|...|+++.+.. |+..+|..+...+...|++++|...++.+.+..
T Consensus 255 ~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------------------- 300 (514)
T 2gw1_A 255 GAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-------------------------------- 300 (514)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--------------------------------
T ss_pred HHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--------------------------------
Confidence 9999999988874 448888888999999999999999999887531
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 042546 399 FRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGD 478 (671)
Q Consensus 399 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 478 (671)
+.+..++..+...|...|++++|...|++..+.. +.+..++..+...|.+.|++++|...++++.+.. +.+.
T Consensus 301 ------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 372 (514)
T 2gw1_A 301 ------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP 372 (514)
T ss_dssp ------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred ------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence 1223456777788888999999999999888765 4467788888888999999999999999887653 3356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCCCHH
Q 042546 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA----GYAIDLLVNTYCS---KNRAIDACKFVHNCVREYDLKPWHT 551 (671)
Q Consensus 479 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~p~~~ 551 (671)
.+|..+...+...|++++|.+.++++.+...-.++ ...+..+...|.. .|++++|...|+..... .+.+..
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~ 450 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQ 450 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHH
Confidence 77888888888999999999988888762222222 3477788888888 88899999888888764 233566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588 (671)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~ 588 (671)
+|..+...|.+.|++++|.+.+++..+. .|+....
T Consensus 451 ~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 451 AKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHH
Confidence 7778888888888888888888888763 5655443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-17 Score=175.36 Aligned_cols=418 Identities=11% Similarity=0.015 Sum_probs=274.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|+..|+.+.+..+ .+...|..+...+.+.|++++|++.|++..+.. +.+..++..+...+...
T Consensus 38 ~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-------- 106 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL-------- 106 (537)
T ss_dssp TTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH--------
T ss_pred hccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc--------
Confidence 5677777777777665332 356667777777777777777777777776553 22344444444444333
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
|+.++|...|+.+.. .|+
T Consensus 107 ----------------------------------------------------------g~~~~A~~~~~~~~~----~~~ 124 (537)
T 3fp2_A 107 ----------------------------------------------------------GNFTDAMFDLSVLSL----NGD 124 (537)
T ss_dssp ----------------------------------------------------------TCHHHHHHHHHHHC--------
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHhc----CCC
Confidence 677788888864321 222
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSK------GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCC 374 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~ 374 (671)
..+..+..+...+...+|...++++... ...|+..... .+....+.+.+...+.... ...+....+
T Consensus 125 --~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 196 (537)
T 3fp2_A 125 --FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA----SFFGIFDSHLEVSSVNTSS--NYDTAYALL 196 (537)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH----HHHHTSCHHHHHHTSCCCC--SSCSSHHHH
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH----HHHHhcChHHHHHHHhhcc--ccccHHHHH
Confidence 2223344555556667777777777442 2233333322 2333334333333222211 111111111
Q ss_pred HHHHHHHHhcCcc-------cHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042546 375 TFLLRKIVVSKQL-------DMRLFSKVVRVFRENGNVLT--------DAMLNSVLKALISVGRMGECNKILKAMEEGGF 439 (671)
Q Consensus 375 ~~ll~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 439 (671)
...+..+...... +...+..+++.+.+. .|+ ..++..+...+...|++++|...|++..+..
T Consensus 197 ~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~- 273 (537)
T 3fp2_A 197 SDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH- 273 (537)
T ss_dssp HHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-
Confidence 1111111111100 122333344433322 222 2246667788899999999999999998864
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 519 (671)
|+..+|..+...|...|++++|.+.++++.+.. +.+..+|..+...+...|++++|.+.+++..+ .. +.+...+..
T Consensus 274 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~ 349 (537)
T 3fp2_A 274 -PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS-LN-PENVYPYIQ 349 (537)
T ss_dssp -CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCSHHHHH
T ss_pred -CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hC-CCCHHHHHH
Confidence 668889999999999999999999999998765 34678899999999999999999999999987 32 224567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HH---HHHHH
Q 042546 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP-PF----VD---PFIKY 591 (671)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~----~~---t~~~~ 591 (671)
+...|...|++++|...|++.... .+.+...|..+...|...|++++|.+.++++.+.... ++ .. .....
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 999999999999999999999875 2345678889999999999999999999998753211 11 01 11345
Q ss_pred HHhc----------CChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhc
Q 042546 592 VSKS----------GTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRN 648 (671)
Q Consensus 592 l~~~----------g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 648 (671)
+... |++++|...++++....+.+...|..+..+|.+.|++++|.+.+++..+..+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 5666 99999999999999987788899999999999999999999999997664443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4e-20 Score=198.79 Aligned_cols=151 Identities=10% Similarity=0.066 Sum_probs=127.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEE---GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS 483 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 483 (671)
-..|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC------HHHHHHH
Q 042546 484 LIKGHCVAGD-LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW------HTTYEEL 556 (671)
Q Consensus 484 li~~~~~~g~-~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~------~~~~~~l 556 (671)
+|.++|+.|+ .++|.++|++|.+ .|+.||..+|++++.++.+.+-++.. +++.. ++.|+ ..+...|
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~V----rkv~P--~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAV----HKVKP--TFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHH----GGGCC--CCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHH----HHhCc--ccCCCCCCcccccchHHH
Confidence 9999999998 5789999999999 99999999999999877765444433 33322 34443 3444556
Q ss_pred HHHHHhcC
Q 042546 557 IKNLLVQR 564 (671)
Q Consensus 557 i~~~~~~g 564 (671)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66666544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-16 Score=156.58 Aligned_cols=310 Identities=13% Similarity=0.055 Sum_probs=226.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379 (671)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 379 (671)
|+..|..+...+.+.|++++|...|++..+.. +.+..++..+...+...|++++|...|+++.+. .|
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~---------- 68 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KM---------- 68 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CT----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CC----------
Confidence 34566777777888888888888888887753 235777888888888888888888888877642 11
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHH-------
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFI---ASSNMKSKI------- 449 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~l------- 449 (671)
.+...+..+...|.+.|++++|...|++..+.. + .+...+..+
T Consensus 69 --------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 121 (359)
T 3ieg_A 69 --------------------------DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQ 121 (359)
T ss_dssp --------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHH
Confidence 122346667777778888888888888877653 1 233444444
Q ss_pred -----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 042546 450 -----AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524 (671)
Q Consensus 450 -----i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 524 (671)
...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+ . .+.+..++..+...|
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASK-L-KSDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-T-CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHH
Confidence 567788888899998888887764 34677788888888888999999988888876 2 334667788888888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-----
Q 042546 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYE------------ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP----- 587 (671)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t----- 587 (671)
...|++++|...|+...+.. +.+...+. .+...+.+.|++++|.+.+++..+. .|+...
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 274 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRS 274 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHH
Confidence 88899999988888887642 22233332 2255678899999999999988764 344322
Q ss_pred ---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHH
Q 042546 588 ---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLL 656 (671)
Q Consensus 588 ---~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~ 656 (671)
+...+.+.|++++|...++...+..+.+...|..+..+|.+.|++++|.+.+++..+..+..+.+...+
T Consensus 275 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 346 (359)
T 3ieg_A 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 235567889999999999998887777888999999999999999999999998776555555544433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-15 Score=163.28 Aligned_cols=388 Identities=11% Similarity=-0.029 Sum_probs=255.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|+..|+.+.+..+ .+...|..+...+.+.|++++|+..|+.+.. .|+.. ...+..+...+....+..
T Consensus 72 ~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~ 144 (537)
T 3fp2_A 72 TGDLEKVIEFTTKALEIKP--DHSKALLRRASANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMK 144 (537)
T ss_dssp HTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHH
Confidence 5999999999999987432 4678899999999999999999999974422 22221 112223333333333333
Q ss_pred HHHHHHcC-C-----CCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHh-----------CCChHH
Q 042546 221 LKGIFATG-S-----IDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKL-----------GDEPKK 283 (671)
Q Consensus 221 ~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 283 (671)
..+..... + ..+... .+..+.........+...............+...+... .+++++
T Consensus 145 ~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 220 (537)
T 3fp2_A 145 VLNENLSKDEGRGSQVLPSNT----SLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK 220 (537)
T ss_dssp HHHHHCC-------CCCCCHH----HHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccccccchHh----HHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 22221110 0 000000 00111111111110100000001111111111111111 147889
Q ss_pred HHHHHHHHHHcCCCCCC-------HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 042546 284 ALIFFRWAEESGFVKHD-------ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 284 A~~~f~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 356 (671)
|..+|+.+.+.. +.+ ..+|..+...+...|++++|...|++..+. .|+..+|..+...+...|++++|.
T Consensus 221 A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 221 STDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp HHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHH
T ss_pred HHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHH
Confidence 999999987532 233 335677778888999999999999999886 467888889999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
..|+++.+. .+.+..++..+...|...|++++|...|++..+
T Consensus 297 ~~~~~~~~~--------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 297 KFFQKAVDL--------------------------------------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp HHHHHHHHH--------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcc--------------------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999988742 122345577888889999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE----GTSH 512 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----g~~p 512 (671)
.. +.+...|..+...|.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++.+.. ....
T Consensus 339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 65 4467889999999999999999999999998764 3456788889999999999999999999887611 1111
Q ss_pred CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 042546 513 AGYAIDLLVNTYCSK----------NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP 582 (671)
Q Consensus 513 ~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 582 (671)
....+..+...|.+. |++++|...|++.... .+.+...|..+...|.+.|++++|.+.|++..+. .
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~ 492 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL--A 492 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--C
Confidence 222344445667777 9999999999998864 2345678888889999999999999999988864 4
Q ss_pred CCHHH
Q 042546 583 PFVDP 587 (671)
Q Consensus 583 p~~~t 587 (671)
|+...
T Consensus 493 ~~~~~ 497 (537)
T 3fp2_A 493 RTMDE 497 (537)
T ss_dssp --CHH
T ss_pred CCcHH
Confidence 44433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.6e-19 Score=188.19 Aligned_cols=138 Identities=9% Similarity=-0.011 Sum_probs=120.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHME---ASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~ 516 (671)
..-..|||+||++||+.|++++|.++|++|. ..|+.||.+|||+||.+||+.|++++|.++|++|.+ .|+.||.+|
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvT 202 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLS 202 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHH
Confidence 3445799999999999999999999998876 458999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 042546 517 IDLLVNTYCSKNR-AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF 584 (671)
Q Consensus 517 ~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~ 584 (671)
||+||+++|+.|+ .++|.++|++|.++ |+.||..+|++++.++.+. .+++..+++ ..++.|+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 9999999999998 47899999999986 9999999999999877664 344444444 3455554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-14 Score=146.15 Aligned_cols=207 Identities=10% Similarity=-0.007 Sum_probs=129.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
.+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 34455666777777777777766544 3456666667777777777777777777766553 345566666777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-----HHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAID------------LLVNTYCSKNRAIDACKFVHNCVREYDLKPWH-----TTYEE 555 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-----~~~~~ 555 (671)
++++|.+.+++..+ .. +.+...+. .+...+.+.|++++|...+++..... |+. ..|..
T Consensus 203 ~~~~A~~~~~~a~~-~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 203 DHELSLSEVRECLK-LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKER 277 (359)
T ss_dssp CHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh-hC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHH
Confidence 77777777777665 21 11122221 22455777777788777777776542 332 22444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 042546 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFV-DPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628 (671)
Q Consensus 556 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~ 628 (671)
+...+.+.|++++|++.+++..+. .|+. ..+ ...+...|++++|...|+++.+..+.+...+..+..+...
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 566777777888888877777654 3432 222 4455677888888888887777666666666666665544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=160.06 Aligned_cols=344 Identities=12% Similarity=0.071 Sum_probs=163.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLESDLEK 220 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 220 (671)
.|++++|..+++.+.. |+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...
T Consensus 16 ~~~ld~A~~fae~~~~-----~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~-------- 74 (449)
T 1b89_A 16 IGNLDRAYEFAERCNE-----PA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS-------- 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCC-----hH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC--------
Confidence 6899999999999966 54 9999999999999999999999753 5888999999988776
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCC
Q 042546 221 LKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHD 300 (671)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~ 300 (671)
|++++|.++++...+. .++
T Consensus 75 ----------------------------------------------------------g~~EeAi~yl~~ark~---~~~ 93 (449)
T 1b89_A 75 ----------------------------------------------------------GNWEELVKYLQMARKK---ARE 93 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHh---Ccc
Confidence 4555666655554431 566
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 380 (671)
+.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+.
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------------- 149 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------------- 149 (449)
T ss_dssp ---------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHTT-----------------
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhh-----------------
Confidence 7889999999999999999998885 3788899999999999999999999999762
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 381 IVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD 460 (671)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 460 (671)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++
T Consensus 150 -----------------------------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 150 -----------------------------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp -----------------------------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHH
Confidence 1889999999999999999999988 37899999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHH
Q 042546 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK--NRAIDACKFVH 538 (671)
Q Consensus 461 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~ 538 (671)
.|......+ ..++.-...++..|.+.|++++|..+++.... .. +-....|+-|--+|++- +++.+..+.|.
T Consensus 195 lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~-le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 195 LAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG-LE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-ST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC-Cc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 996655542 23333455789999999999999999999865 33 44566777777777763 45556666554
Q ss_pred HHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 042546 539 NCVREYDLKP------WHTTYEELIKNLLVQRGFKDALSLLCLMKDH-GFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 539 ~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~ 611 (671)
.+-+++| +...|..++-.|.+.++++.|... |.++ ...-+...|.....+..+.|---+...-....
T Consensus 268 ---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~ 341 (449)
T 1b89_A 268 ---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 341 (449)
T ss_dssp ---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred ---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence 2223333 345888899999999999998774 4443 22334577777777777766433322221211
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 612 RFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 612 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
. | ...+-|+.++...=+...+.++|++
T Consensus 342 ~-p--~~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 342 K-P--LLLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp C-G--GGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred C-H--HHHHHHHHHHHhccCcHHHHHHHHH
Confidence 1 1 1234444444444455555555544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-15 Score=149.48 Aligned_cols=289 Identities=10% Similarity=-0.004 Sum_probs=181.2
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 377 (671)
+.|...+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|..+++++.+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------------ 85 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDL------------ 85 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh------------
Confidence 4555566666666777777777777777766553 223445555666666677777777777666531
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG-RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456 (671)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 456 (671)
.+.+...+..+...+...| ++++|.+.|++..+.. +.+...|..+...|...
T Consensus 86 --------------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 138 (330)
T 3hym_B 86 --------------------------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVE 138 (330)
T ss_dssp --------------------------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHH
T ss_pred --------------------------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc
Confidence 1234456667777777777 7777777777776554 34556677777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536 (671)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 536 (671)
|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.+++..+ . .+.+...+..+...|...|++++|...
T Consensus 139 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 139 SEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALS-I-APEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp TCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT-T-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-h-CCCChHHHHHHHHHHHHcccHHHHHHH
Confidence 77777777777776653 22345555667777777777777777777765 2 233456666777777777777777777
Q ss_pred HHHHHHhCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H---HHHHHHHhcCChHHHHHHH
Q 042546 537 VHNCVREYD-------LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-D---PFIKYVSKSGTSDDAIAFL 605 (671)
Q Consensus 537 ~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~---t~~~~l~~~g~~~~A~~~~ 605 (671)
|++...... ...+..+|..+...|.+.|++++|.+.+++..+.. |+. . .+...+.+.|++++|...+
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 776654310 12234566667777777777777777777766532 322 1 1234455667777777777
Q ss_pred HHhhhCCCCCHHHHHHHHHHH-HHcCC
Q 042546 606 KGMTSKRFPSMSVVLCLFAAF-FQARR 631 (671)
Q Consensus 606 ~~m~~~~~p~~~~~~~l~~~~-~~~g~ 631 (671)
++..+..+.+...+..+..++ ...|+
T Consensus 294 ~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 294 HTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 766666555666666666666 33444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.7e-15 Score=146.99 Aligned_cols=240 Identities=10% Similarity=0.023 Sum_probs=126.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG-KKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
+..++..+...|++++|..+++++.+.. +.+...|..+...+...| ++++|.+.|++..+.. +.+...|..+...+.
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFA 136 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3334445555566666666666655543 334455555556666666 5666666666655443 223445555666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 569 (671)
..|++++|.+.++++.+ .. +.+...+..+...|...|++++|.+.|++.... .+.+...+..+...+...|++++|
T Consensus 137 ~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQ-LM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHTCHHHHHHHHHHHHH-HT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HccCHHHHHHHHHHHHH-hc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHH
Confidence 66666666666666554 21 112334444555566666666666666665542 223345555555666666666666
Q ss_pred HHHHHHHHhCCC-------CCCH----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 042546 570 LSLLCLMKDHGF-------PPFV----DPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638 (671)
Q Consensus 570 ~~l~~~m~~~~~-------~p~~----~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 638 (671)
.+.+++..+... .|+. ..+...+...|++++|...+++..+..+.+...|..+..+|.+.|++++|.+.
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHH
Confidence 666655543210 0111 11234445556666666666665554444555566666666666666666666
Q ss_pred HHhchHhhhccHHHHHHH
Q 042546 639 LSKCPRYVRNHADVLNLL 656 (671)
Q Consensus 639 ~~~m~~~~~~~~~~~~l~ 656 (671)
+++..+..+..+.+...+
T Consensus 293 ~~~al~~~p~~~~~~~~l 310 (330)
T 3hym_B 293 FHTALGLRRDDTFSVTML 310 (330)
T ss_dssp HHTTTTTCSCCHHHHHHH
T ss_pred HHHHHccCCCchHHHHHH
Confidence 666554444444443333
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.5e-16 Score=153.34 Aligned_cols=379 Identities=12% Similarity=0.042 Sum_probs=130.5
Q ss_pred cccccCcccccccccccCCCCCCCCCcccccCCCCccccccCCchhHHHHHhhhcCCchhHHHHHHhcCCCCCHHHHHHH
Q 042546 57 SRFSRLPICYSRLINLIDPKNPNFRNPMICSYSSEPAMEQKESDFTVVSDIFYKFSDVNDISKQLELSGVVFTHEMVLKV 136 (671)
Q Consensus 57 ~~~g~~~~A~~~f~~~~~~~~~~~wn~~i~~~~~~~~~~~~~p~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (671)
-++|++++|...|+++ +.++ +|..+..++.
T Consensus 14 ~~~~~ld~A~~fae~~-~~~~--vWs~La~A~l----------------------------------------------- 43 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-NEPA--VWSQLAKAQL----------------------------------------------- 43 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-CChH--HHHHHHHHHH-----------------------------------------------
Confidence 4789999999999998 6554 8888776555
Q ss_pred HHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 042546 137 LKNLESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLES 216 (671)
Q Consensus 137 l~~~~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 216 (671)
. .|++++|...|.+. +|...|..++.++.+.|++++|+..++..++. .+++.+.+.++.+|.+.|+++
T Consensus 44 --~-~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~ 111 (449)
T 1b89_A 44 --Q-KGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLA 111 (449)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred --H-cCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHH
Confidence 2 47888898888653 56679999999999999999999966666554 556888999999999986655
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 042546 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296 (671)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~ 296 (671)
++. ++++
T Consensus 112 e~e------------------------------------------------------------------~f~~------- 118 (449)
T 1b89_A 112 ELE------------------------------------------------------------------EFIN------- 118 (449)
T ss_dssp HHT------------------------------------------------------------------TTTT-------
T ss_pred HHH------------------------------------------------------------------HHHc-------
Confidence 543 3332
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 297 VKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376 (671)
Q Consensus 297 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 376 (671)
.|+..+|+.+...|...|++++|..+|..+ ..|..+..++.+.|++++|.+.+.++. +..+
T Consensus 119 -~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~--- 179 (449)
T 1b89_A 119 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRT--- 179 (449)
T ss_dssp -CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHH---
T ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC------Cchh---
Confidence 466678888888888888888888888866 267788888888888888888887661 3344
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456 (671)
Q Consensus 377 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 456 (671)
|..++.+|...|+++.|......+ ..++.-...++..|.+.
T Consensus 180 ----------------------------------Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 180 ----------------------------------WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDR 220 (449)
T ss_dssp ----------------------------------HHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHT
T ss_pred ----------------------------------HHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHC
Confidence 444444444444444443322221 11222222344444444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCC------CHHHHHHHHHHHHhcC
Q 042546 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA--GDLDKAADCFQKMVEKEGTSH------AGYAIDLLVNTYCSKN 528 (671)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~g~~p------~~~~~~~li~~~~~~g 528 (671)
|++++|..+++...... +.....|+-+--.|++- +++.+.++.|..- -+++| +...|.-++-.|.+.+
T Consensus 221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~ 296 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYE 296 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444444443322 22233333333333332 1222222222210 11222 2233445555555555
Q ss_pred CHHHHHHHHH-------------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhc
Q 042546 529 RAIDACKFVH-------------NCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKS 595 (671)
Q Consensus 529 ~~~~A~~~~~-------------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~ 595 (671)
+++.|....- ++..+ ..+...|-..|.-|.... +..--.++.-+. ...|..-.+..+.+.
T Consensus 297 e~d~A~~tm~~h~~~a~~~~~f~~~~~k---v~n~elyYkai~fyl~~~-p~~l~~ll~~l~---~~ld~~r~v~~~~~~ 369 (449)
T 1b89_A 297 EYDNAIITMMNHPTDAWKEGQFKDIITK---VANVELYYRAIQFYLEFK-PLLLNDLLMVLS---PRLDHTRAVNYFSKV 369 (449)
T ss_dssp CHHHHHHHHHHSTTTTCCHHHHHHHHHH---CSSTHHHHHHHHHHHHHC-GGGHHHHHHHHG---GGCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHhCChhhhhhHHHHHHHhc---hhHHHHHHHHHHHHHhcC-HHHHHHHHHHHH---hccCcHHHHHHHHHc
Confidence 5555443221 11111 223445555555444211 111112222221 134445556667777
Q ss_pred CChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 596 GTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 596 g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
|.+.-+..++..+... .+..+=.++-+.|....+++.-..-++.
T Consensus 370 ~~l~l~~~yl~~v~~~--n~~~vnealn~l~ieeed~~~lr~si~~ 413 (449)
T 1b89_A 370 KQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQALRTSIDA 413 (449)
T ss_dssp TCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 7777778888777764 2556666777788888887765555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.3e-13 Score=142.63 Aligned_cols=215 Identities=8% Similarity=0.011 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSS-------AGKKD-------EANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
++|..+|++..... +.+...|..+...+.+ .|+++ +|.++|++..+.-.+.+...|..++..+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 36777888887653 4577888888888875 68877 899999998863223457889999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHA--GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK-NLLVQRGFK 567 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~-~~~~~g~~~ 567 (671)
.|++++|.++|+++.+ +.|+ ...|......+.+.|++++|.++|++..+.. ..+...|..... .+...|+.+
T Consensus 334 ~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp TTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChh
Confidence 9999999999999987 3444 2478888888888999999999999987632 122333332222 234689999
Q ss_pred HHHHHHHHHHhCCCCCCHHH----HHHHHHhcCChHHHHHHHHHhhhCCC--C--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 568 DALSLLCLMKDHGFPPFVDP----FIKYVSKSGTSDDAIAFLKGMTSKRF--P--SMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t----~~~~l~~~g~~~~A~~~~~~m~~~~~--p--~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
+|.++|++..+. .|+... ++..+.+.|+.++|..+|++.....+ | ....|...+....+.|+.+.+..+.
T Consensus 409 ~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 409 VAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999988764 465433 34555688999999999999988643 2 2458888888888999999999999
Q ss_pred HhchHhhh
Q 042546 640 SKCPRYVR 647 (671)
Q Consensus 640 ~~m~~~~~ 647 (671)
+++.+..+
T Consensus 487 ~r~~~~~p 494 (530)
T 2ooe_A 487 KRRFTAFR 494 (530)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHCc
Confidence 98766544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-15 Score=151.86 Aligned_cols=287 Identities=10% Similarity=-0.066 Sum_probs=188.9
Q ss_pred cCChHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccH
Q 042546 314 EDCIDRFWK-VLDEMRSKGY-EM--EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM 389 (671)
Q Consensus 314 ~g~~~~A~~-~~~~m~~~g~-~p--~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 389 (671)
.|++++|.+ .|++.....- .| +...+..+...+.+.|++++|...|+++.+. .|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p-------------------- 95 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ--DP-------------------- 95 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS--CT--------------------
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CC--------------------
Confidence 356666666 5554332210 11 2345666677777777777777777777643 11
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 390 RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469 (671)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (671)
.+..++..+..+|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|.+.++++
T Consensus 96 ----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 96 ----------------KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp ----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122345666666777777777777777776654 446667777777777777777777777777
Q ss_pred HHCCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 470 EASGSDVGDKMWVS---------------LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC 534 (671)
Q Consensus 470 ~~~g~~~~~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 534 (671)
.+.... +...+.. .+..+...|++++|.+.++++.+...-.++..++..+...|.+.|++++|.
T Consensus 159 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 159 LRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp HHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 665321 1111111 233344778888888888888772222225777888888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-H---HHHHHHhcCChHHHHHHHHHhhh
Q 042546 535 KFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-P---FIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 535 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t---~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
..|++.... .+.+...|..+...|.+.|++++|++.++++.+. .|+.. . +...+.+.|++++|...++++..
T Consensus 238 ~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 238 DCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888764 2335677888888888888888888888887764 34432 2 24566788888888888888776
Q ss_pred CCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 611 KRFPS-----------MSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 611 ~~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
..+.+ ...|..+..+|.+.|++++|..++++-.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 43322 78999999999999999999999886543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-12 Score=139.74 Aligned_cols=399 Identities=12% Similarity=0.001 Sum_probs=253.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCChhHHH
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKF-EKEGLESDLE 219 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~~~ 219 (671)
.|+++.|+.+|+.+.+..+ .+...|...+..+.+.|++++|..+|++..... |+...|...+... ...|+.+++.
T Consensus 25 ~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFP--SSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred hCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHH
Confidence 5788888888888876332 456678888888888888888888888887763 6766666655432 2334433332
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC-
Q 042546 220 KLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVK- 298 (671)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~- 298 (671)
+ .+.++|+......|..
T Consensus 101 ~--------------------------------------------------------------~~~~~~~~al~~~g~~~ 118 (530)
T 2ooe_A 101 E--------------------------------------------------------------KMAQAYDFALDKIGMEI 118 (530)
T ss_dssp H--------------------------------------------------------------HHHHHHHHHHHHTTTST
T ss_pred H--------------------------------------------------------------HHHHHHHHHHHHCCCCc
Confidence 2 1122333333222222
Q ss_pred CCHHHHHHHHHHHHc---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-------------HhCCChHHHH
Q 042546 299 HDESSYNAMASVLGR---------EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRF-------------SERNMVKEAV 356 (671)
Q Consensus 299 ~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~-------------~~~g~~~~a~ 356 (671)
++...|...+....+ .|+++.|..+|++..+....+....|....... .+.++++.|.
T Consensus 119 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~ 198 (530)
T 2ooe_A 119 MSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNAR 198 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHH
Confidence 234455555444333 455666666666665521111122332211110 1234566677
Q ss_pred HHHHHH------HhCC---CCCC--------HHHHHHHHHHHHhcCc--cc----HHHHHHHHHHHHHcCCCCCHHHHHH
Q 042546 357 DLYEFA------MACK---NKPS--------VNCCTFLLRKIVVSKQ--LD----MRLFSKVVRVFRENGNVLTDAMLNS 413 (671)
Q Consensus 357 ~l~~~m------~~~g---~~p~--------~~~~~~ll~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (671)
.++... .+.. +.|+ ...|...+......+. .+ ...+..+++..... .+.+...|..
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~ 277 (530)
T 2ooe_A 199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYE 277 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 666653 2221 2333 1344444432222110 01 12333444444443 3445677888
Q ss_pred HHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H
Q 042546 414 VLKALIS-------VGRMG-------ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-D 478 (671)
Q Consensus 414 li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~ 478 (671)
....+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ .
T Consensus 278 ~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~ 355 (530)
T 2ooe_A 278 AAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCH
T ss_pred HHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCc
Confidence 8887775 79987 89999999886323456889999999999999999999999999985 454 3
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 479 -KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT-YCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556 (671)
Q Consensus 479 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 556 (671)
..|...+..+.+.|+.++|.++|++..+ .. +.+...|...... +...|+.++|..+|+...+.. +-+...|..+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~ 431 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKARE-DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAY 431 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 5799999999999999999999999987 32 1122233222222 346899999999999988752 2357889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCH-H----HHHHHHHhcCChHHHHHHHHHhhhCC
Q 042546 557 IKNLLVQRGFKDALSLLCLMKDHGF-PPFV-D----PFIKYVSKSGTSDDAIAFLKGMTSKR 612 (671)
Q Consensus 557 i~~~~~~g~~~~A~~l~~~m~~~~~-~p~~-~----t~~~~l~~~g~~~~A~~~~~~m~~~~ 612 (671)
+..+.+.|+.++|..+|++....+. .|+. . .++......|+.+.+..+++++.+..
T Consensus 432 ~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 432 IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999987642 3431 1 23555567899999999998887643
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-11 Score=129.07 Aligned_cols=307 Identities=13% Similarity=0.058 Sum_probs=170.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CC
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR----EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE----RN 350 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g 350 (671)
++.++|.+.|++..+ ..+...+..|-..|.. .+++++|.+.|++..+.| +...+..+-..|.. .+
T Consensus 93 ~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 93 QDYAQAVIWYKKAAL----KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 456666666666554 2355556666666655 566677777776666654 45556666666655 56
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCH
Q 042546 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS----VGRM 424 (671)
Q Consensus 351 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 424 (671)
+.++|.+.|++..+.| +...+..+-..|.... ..+.+.+...++...+.+ +...+..+...|.. .++.
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 6666666666665542 2333333333332210 112223333333333332 33455556666654 5667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHH
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA-----GDLD 495 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~ 495 (671)
++|...|++..+.| +...+..+-..|.. .++.++|.+.|++..+.| +...+..+-..|... ++.+
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 77777777666543 34455555555655 666777777777666543 344555555666555 6677
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHH
Q 042546 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN---RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV----QRGFKD 568 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 568 (671)
+|...|++..+ .+ +...+..+-..|.+.| +.++|.+.|++..+. .+...+..|-..|.. .++.++
T Consensus 314 ~A~~~~~~a~~-~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 314 QAISWYTKSAE-QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHH-TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHh-cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 77777776666 43 3345555555555544 566677766666553 245566666666666 566777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHh----cCChHHHHHHHHHhhhCC
Q 042546 569 ALSLLCLMKDHGFPPFVDPFIKYVSK----SGTSDDAIAFLKGMTSKR 612 (671)
Q Consensus 569 A~~l~~~m~~~~~~p~~~t~~~~l~~----~g~~~~A~~~~~~m~~~~ 612 (671)
|.+.|++..+.|...-...+...|.+ .++.++|...|+.....+
T Consensus 386 A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 386 AAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 77777766665421111122333333 566677777776666543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-14 Score=144.78 Aligned_cols=267 Identities=9% Similarity=0.016 Sum_probs=158.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 042546 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLY 359 (671)
Q Consensus 280 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~ 359 (671)
++++|...|+.+.+.. +.+..+|..+...+.+.|++++|.+.|++..+.. +.+..++..+...+...|++++|...+
T Consensus 79 ~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 79 DLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp CHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3334444444443321 3344455555555555555555555555555442 224555555555555566666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042546 360 EFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGF 439 (671)
Q Consensus 360 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 439 (671)
+++.+...... ..+..+-.. . +. ..+. ..+. .+..+...|++++|...|+++.+..-
T Consensus 156 ~~~~~~~~~~~-~~~~~~~~~-~--~~-----------------~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p 212 (368)
T 1fch_A 156 RDWLRYTPAYA-HLVTPAEEG-A--GG-----------------AGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDP 212 (368)
T ss_dssp HHHHHTSTTTG-GGCC------------------------------------C-TTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHhCcCcH-HHHHHHHHH-h--hh-----------------hccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCc
Confidence 55554321111 111100000 0 00 0000 0111 12222377788888888888876541
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 042546 440 I-ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518 (671)
Q Consensus 440 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 518 (671)
. ++..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+ .. +.+..++.
T Consensus 213 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~-~~~~~~~~ 289 (368)
T 1fch_A 213 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE-LQ-PGYIRSRY 289 (368)
T ss_dssp TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCcHHHHH
Confidence 1 147778888888888888888888888877653 34567788888888888888888888888876 22 23566778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVREYDLK---------PWHTTYEELIKNLLVQRGFKDALSLLCL 575 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~~l~~~ 575 (671)
.+..+|.+.|++++|...|++......-. ....+|..+..+|...|+.++|..++++
T Consensus 290 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 290 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 88888888888888888888776531100 1157788888888888888888877763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-11 Score=131.33 Aligned_cols=346 Identities=12% Similarity=0.059 Sum_probs=259.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHc----cCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 042546 141 ESSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGV----HGLVQEFWGLVDVMKKKGYGVASHVRNKMTEKFEKEGLES 216 (671)
Q Consensus 141 ~~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~----~g~~~~a~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 216 (671)
.++++.|...|+...+ . -+...+..|-..|.. .++.++|+..|++..+.| +...+..+-..|....
T Consensus 56 ~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~--- 125 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAE-Q---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGN--- 125 (490)
T ss_dssp CCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS---
T ss_pred CcCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC---
Confidence 4788888888888776 2 355677777777777 788888888888887765 4444444443333310
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 042546 217 DLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGF 296 (671)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~ 296 (671)
|+ .++.++|.+.|++..+
T Consensus 126 ---------------------------------------------g~--------------~~~~~~A~~~~~~a~~--- 143 (490)
T 2xm6_A 126 ---------------------------------------------GV--------------KVDKAESVKWFRLAAE--- 143 (490)
T ss_dssp ---------------------------------------------SS--------------CCCHHHHHHHHHHHHH---
T ss_pred ---------------------------------------------CC--------------CCCHHHHHHHHHHHHH---
Confidence 00 1577788888887765
Q ss_pred CCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHhCCCC
Q 042546 297 VKHDESSYNAMASVLGR----EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE----RNMVKEAVDLYEFAMACKNK 368 (671)
Q Consensus 297 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~l~~~m~~~g~~ 368 (671)
.-+...+..+-..|.. .+++++|.+.|++..+.| +...+..+-..|.. .++.++|.+.|++..+.|
T Consensus 144 -~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 217 (490)
T 2xm6_A 144 -QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-- 217 (490)
T ss_dssp -TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred -CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC--
Confidence 3366777777777776 678888888888887764 67777777777777 788888888888887654
Q ss_pred CCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC
Q 042546 369 PSVNCCTFLLRKIVVSK--QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALIS----VGRMGECNKILKAMEEGGFIAS 442 (671)
Q Consensus 369 p~~~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~ 442 (671)
+...+..+-..+.... ..+...+...++...+.+ +...+..+-..|.. .++.++|...|++..+.| +
T Consensus 218 -~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~ 290 (490)
T 2xm6_A 218 -DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---N 290 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---C
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---C
Confidence 4455555555555421 334556666666665553 45677777788888 899999999999998754 5
Q ss_pred HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCH
Q 042546 443 SNMKSKIAFRLSSA-----GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG---DLDKAADCFQKMVEKEGTSHAG 514 (671)
Q Consensus 443 ~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~g~~p~~ 514 (671)
...+..+...|... ++.++|...|++..+.| +...+..+-..|...| +.++|.++|++..+ .+ +.
T Consensus 291 ~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~~---~~ 363 (490)
T 2xm6_A 291 SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-KG---EK 363 (490)
T ss_dssp HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-TT---CH
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-CC---CH
Confidence 66778888888887 89999999999998865 5667777888887766 88999999999988 54 67
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 042546 515 YAIDLLVNTYCS----KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV----QRGFKDALSLLCLMKDHGFP 582 (671)
Q Consensus 515 ~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~ 582 (671)
..+..|-..|.. .++.++|.+.|+...+. + +...+..|-..|.+ .++.++|.+.|++..+.+..
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-G---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 788888888888 89999999999999874 3 56788888888888 89999999999999887643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-14 Score=144.13 Aligned_cols=265 Identities=9% Similarity=-0.077 Sum_probs=207.2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042546 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414 (671)
Q Consensus 335 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (671)
+...|..+...+.+.|++++|...|+++.+. .+.+..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------------------------------------~p~~~~~~~~l 105 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------------------------------------DPGDAEAWQFL 105 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------------------CTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------------------CcCCHHHHHHH
Confidence 3455888888999999999999999988752 12234568888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----------HHHHHH
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-----------DKMWVS 483 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----------~~~~~~ 483 (671)
..+|.+.|++++|...|++..+.. +.+..+|..+...|.+.|++++|.+.|+++.+.. |+ ...+..
T Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~ 182 (365)
T 4eqf_A 106 GITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRR 182 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHH
Confidence 899999999999999999998765 4568899999999999999999999999987642 22 233445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 042546 484 LIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ 563 (671)
Q Consensus 484 li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (671)
+...+.+.|++++|.+.++++.+...-.++..++..+...|...|++++|.+.|++..+. .+.+..+|..+...|.+.
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 260 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANG 260 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 678899999999999999999883222236888999999999999999999999999874 344678999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHH-H---HHHHHHhcCChHHHHHHHHHhhhCCC----C--------CHHHHHHHHHHHH
Q 042546 564 RGFKDALSLLCLMKDHGFPPFVD-P---FIKYVSKSGTSDDAIAFLKGMTSKRF----P--------SMSVVLCLFAAFF 627 (671)
Q Consensus 564 g~~~~A~~l~~~m~~~~~~p~~~-t---~~~~l~~~g~~~~A~~~~~~m~~~~~----p--------~~~~~~~l~~~~~ 627 (671)
|++++|++.++++.+. .|+.. . +...+.+.|++++|...|+++....+ + +...|..+..++.
T Consensus 261 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 261 DRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 9999999999998874 45532 2 35667889999999999998876321 1 3678999999999
Q ss_pred HcCCHHHHHHHHHhchH
Q 042546 628 QARRHSEAQDLLSKCPR 644 (671)
Q Consensus 628 ~~g~~~~A~~~~~~m~~ 644 (671)
..|+.+.|.++.++-++
T Consensus 339 ~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 339 LMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHTCHHHHHHHHTTCCG
T ss_pred HcCcHHHHHHHHHhhHH
Confidence 99999999998887543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.3e-14 Score=141.49 Aligned_cols=160 Identities=7% Similarity=-0.028 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFI-ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
..+...|.+.|++++|...|+++.+..-. ++..+|..+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLAN 259 (365)
T ss_dssp --------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 33444445555555555555555543211 134555555555555555555555555555432 2244555555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----------CCCHHHHHHHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL----------KPWHTTYEELIKNL 560 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------~p~~~~~~~li~~~ 560 (671)
.|++++|.+.|+++.+ . .+.+..++..+..+|.+.|++++|...|++......- ..+...|..+..++
T Consensus 260 ~g~~~~A~~~~~~al~-~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALE-I-QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp TTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh-c-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 5555555555555554 1 1122445555555555556666666555555432100 00245566666666
Q ss_pred HhcCCHHHHHHHHH
Q 042546 561 LVQRGFKDALSLLC 574 (671)
Q Consensus 561 ~~~g~~~~A~~l~~ 574 (671)
...|+.+.+.++.+
T Consensus 338 ~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 338 SLMDQPELFQAANL 351 (365)
T ss_dssp HHHTCHHHHHHHHT
T ss_pred HHcCcHHHHHHHHH
Confidence 66666666665544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=134.57 Aligned_cols=270 Identities=10% Similarity=-0.021 Sum_probs=201.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDE--SSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAV 356 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 356 (671)
|.+..|+..++.... ..|+. ...-.+...|...|++++|...++. .-.|+..++..+...+...++.++|+
T Consensus 13 g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 13 GSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp TCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 889999888876532 23443 3556677889999999999886654 23567788888888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 357 DLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 357 ~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
+.++++...+..|+.. ..+..+...|.+.|++++|.+.+++
T Consensus 86 ~~l~~ll~~~~~P~~~------------------------------------~~~~~la~~~~~~g~~~~Al~~l~~--- 126 (291)
T 3mkr_A 86 AELDREMSRSVDVTNT------------------------------------TFLLMAASIYFYDQNPDAALRTLHQ--- 126 (291)
T ss_dssp HHHHHHHHSCCCCSCH------------------------------------HHHHHHHHHHHHTTCHHHHHHHHTT---
T ss_pred HHHHHHHhcccCCCCH------------------------------------HHHHHHHHHHHHCCCHHHHHHHHhC---
Confidence 9999888655555432 2345555778888999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 042546 437 GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMW---VSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA 513 (671)
Q Consensus 437 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~ 513 (671)
+.+...+..+...|.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+ . .+.+
T Consensus 127 ---~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~-~-~p~~ 199 (291)
T 3mkr_A 127 ---GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD-K-CSPT 199 (291)
T ss_dssp ---CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH-H-SCCC
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-h-CCCc
Confidence 4677888888999999999999999999988763 553321 2233444456889999999999987 3 4557
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCCCCCCHHHHHHHH
Q 042546 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD-ALSLLCLMKDHGFPPFVDPFIKYV 592 (671)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~~~~p~~~t~~~~l 592 (671)
...++.+..+|.+.|++++|...|++.... -+-+..++..++..+...|+.++ +.++++++.+ +.|+........
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~d~~ 275 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIKEYR 275 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHHHHH
Confidence 788888888999999999999999988764 23356678888888888888865 5678888775 468777777766
Q ss_pred HhcCChHHHHHHH
Q 042546 593 SKSGTSDDAIAFL 605 (671)
Q Consensus 593 ~~~g~~~~A~~~~ 605 (671)
.+.+.++++..-|
T Consensus 276 ~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 276 AKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.9e-11 Score=133.11 Aligned_cols=447 Identities=12% Similarity=0.128 Sum_probs=296.6
Q ss_pred CCHHHHHHHHHhcCCChHHHHHHHHHHhh---cCCCCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC--CCCHHHH
Q 042546 128 FTHEMVLKVLKNLESSPDEARRFFNWVLE---KESERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGY--GVASHVR 202 (671)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~A~~~f~~m~~---~~~~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~--~p~~~t~ 202 (671)
-++.+...+|.. .+ +-=+.+.+|... -....|+.++ ..+.+|...|.+.+|++++++....+- .-+...-
T Consensus 951 ~d~~lW~~vl~~-~n--~~RR~Lidqv~a~aL~e~~~PeeVs--~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 951 KDPELWGSVLLE-SN--PYRRPLIDQVVQTALSETQDPEEVS--VTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred cCHHHHHHHhcC-Cc--HHHHHHHHHHHHhhcccccCHHHhH--HHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHH
Confidence 456666677644 22 333455555332 1123355554 578888899999999999999884421 1233444
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChH
Q 042546 203 NKMTEKFEKEGLESDLEKLKGIFATGSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPK 282 (671)
Q Consensus 203 ~~ll~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (671)
+.++.+..+. +..........++ ..+. ..+...+.....-++......+.+ .....+..++.. .++++
T Consensus 1026 nlLi~tAIka-D~~Rv~eyI~kLd---~~d~-----~eIA~Iai~lglyEEAf~IYkKa~--~~~~A~~VLie~-i~nld 1093 (1630)
T 1xi4_A 1026 NLLILTAIKA-DRTRVMEYINRLD---NYDA-----PDIANIAISNELFEEAFAIFRKFD--VNTSAVQVLIEH-IGNLD 1093 (1630)
T ss_pred HHHHHHHHHh-ChhhHHHHHHHhh---hccH-----HHHHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHHHH-HhhHH
Confidence 5566655555 2233333333222 1111 111122222233333334444433 122222333321 17889
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 042546 283 KALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFA 362 (671)
Q Consensus 283 ~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m 362 (671)
+|.++.++. -+..+|..+-.++.+.|++++|.+.|.+- -|...|..++.+|.+.|++++|.+.+...
T Consensus 1094 rAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1094 RAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988854 34788999999999999999999999663 37889999999999999999999999987
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 042546 363 MACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS 442 (671)
Q Consensus 363 ~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~ 442 (671)
++.. ++....+.+..+|++.++.+ .....+ ..++...|..+-..|...|++++|..+|...
T Consensus 1161 rk~~--~e~~Idt~LafaYAKl~rle--ele~fI-------~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------- 1221 (1630)
T 1xi4_A 1161 RKKA--RESYVETELIFALAKTNRLA--ELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 1221 (1630)
T ss_pred Hhhc--ccccccHHHHHHHHhhcCHH--HHHHHH-------hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------
Confidence 7654 33333335888888886544 222222 2445567778999999999999999999985
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 042546 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522 (671)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 522 (671)
..|..+...|.+.|++++|.+.+++. .+..+|..+-.+|...|++..|......+.. +...+..++.
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv------~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELIN 1288 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc------CHHHHHHHHH
Confidence 48999999999999999999999876 4678999999999999999999887654333 5666789999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCC---------HHHHHHH
Q 042546 523 TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV--QRGFKDALSLLCLMKDHGFPPF---------VDPFIKY 591 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~~~~p~---------~~t~~~~ 591 (671)
.|.+.|.+++|..+++...... .-+...|+-|...|++ .++..+++++|..-. ++.|- ..-++-.
T Consensus 1289 yYe~~G~feEAI~LlE~aL~Le--raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccC--hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHH
Confidence 9999999999999997775421 2233466666666665 455666666665332 22221 1223667
Q ss_pred HHhcCChHHHHHH--------H-----HHhhhCCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHh
Q 042546 592 VSKSGTSDDAIAF--------L-----KGMTSKRFPSMSVVLCLFAAFFQAR---------------RHSEAQDLLSK 641 (671)
Q Consensus 592 l~~~g~~~~A~~~--------~-----~~m~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~ 641 (671)
|.+.|+++.|... | +.... ...|...|.-.+.-|...+ +.+.+.++|.+
T Consensus 1365 Y~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~-kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~ 1441 (1630)
T 1xi4_A 1365 YDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT-KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK 1441 (1630)
T ss_pred HHhcccHHHHHHHHHhccHhhhhhHHHHHHhc-ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH
Confidence 7889999988732 2 12111 2357888888888888777 77888888874
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-13 Score=136.25 Aligned_cols=263 Identities=11% Similarity=-0.065 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042546 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415 (671)
Q Consensus 336 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 415 (671)
...+..+...+...|++++|..+|+++.+. . +.+...+..+.
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~------------------------------------~~~~~~~~~l~ 62 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQA--A------------------------------------PEREEAWRSLG 62 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--C------------------------------------TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHh--C------------------------------------CCCHHHHHHHH
Confidence 344566777888899999999999988742 1 12344577788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-----------
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSL----------- 484 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l----------- 484 (671)
.+|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|.+.++++.+... .+...+..+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTTTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHH
Confidence 88999999999999999998765 45788899999999999999999999999987632 122222222
Q ss_pred ---HH-HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042546 485 ---IK-GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNL 560 (671)
Q Consensus 485 ---i~-~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (671)
.. .+...|++++|.+.++++.+ .. +.+..++..+...|.+.|++++|.+.+++.... .+.+...|..+...+
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 216 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALE-MN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATL 216 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 22 37788999999999999987 32 336788999999999999999999999999874 234577899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-HH---HHHHHHhcCChHHHHHHHHHhhhCCCC------------CHHHHHHHHH
Q 042546 561 LVQRGFKDALSLLCLMKDHGFPPFV-DP---FIKYVSKSGTSDDAIAFLKGMTSKRFP------------SMSVVLCLFA 624 (671)
Q Consensus 561 ~~~g~~~~A~~l~~~m~~~~~~p~~-~t---~~~~l~~~g~~~~A~~~~~~m~~~~~p------------~~~~~~~l~~ 624 (671)
...|++++|.+.++++.+. .|+. .. +...+...|++++|...++++....+. +...|..+..
T Consensus 217 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 217 ANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence 9999999999999998864 3443 22 256667899999999999998875443 5788999999
Q ss_pred HHHHcCCHHHHHHHHHhchH
Q 042546 625 AFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~ 644 (671)
+|.+.|++++|.+++++..+
T Consensus 295 ~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 295 LLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHTTCHHHHHHHTTCCSH
T ss_pred HHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999987654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-13 Score=133.71 Aligned_cols=229 Identities=14% Similarity=0.038 Sum_probs=149.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVSLIKGHCV 490 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 490 (671)
..+..+|...|++++|...++.. -+|+..++..+...+...|+.++|.+.++++...+..|+ ...+..+...+..
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 34456777777777777655442 255666777777777777777888887777776654453 4445555577777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTY---EELIKNLLVQRGFK 567 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~ 567 (671)
.|++++|.+.+++ ..+...+..+...|.+.|+.++|.+.|+++... .|+.... .+++..+...|+++
T Consensus 114 ~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~ 183 (291)
T 3mkr_A 114 DQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQ 183 (291)
T ss_dssp TTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHH
T ss_pred CCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHH
Confidence 7888877777765 346667777777777778888888877777653 3443211 12223333457778
Q ss_pred HHHHHHHHHHhCCCCCCHHH-H---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHhc
Q 042546 568 DALSLLCLMKDHGFPPFVDP-F---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSE-AQDLLSKC 642 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t-~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~m 642 (671)
+|..+|+++.+. .|+... + ...+.+.|++++|+..|+++....+.+..++..++..+...|+.++ +.+++++.
T Consensus 184 eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 184 DAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp HHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 888888777764 343322 2 3345677888888888877777666677777777777777777765 46777776
Q ss_pred hHhhhccHHHHHHH
Q 042546 643 PRYVRNHADVLNLL 656 (671)
Q Consensus 643 ~~~~~~~~~~~~l~ 656 (671)
....+.++.+.++.
T Consensus 262 ~~~~P~~~~~~d~~ 275 (291)
T 3mkr_A 262 KDAHRSHPFIKEYR 275 (291)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCChHHHHHH
Confidence 65555555544443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-13 Score=132.85 Aligned_cols=263 Identities=10% Similarity=0.049 Sum_probs=203.7
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 357 (671)
.|++++|..+|+.+.+.. +.+..+|..+...+.+.|++++|.+.|++..+.. +.+..++..+...+...|++++|.+
T Consensus 34 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 110 (327)
T 3cv0_A 34 LANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALA 110 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 499999999999987643 5678899999999999999999999999998873 3468899999999999999999999
Q ss_pred HHHHHHhCCCCCCHH-HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHH
Q 042546 358 LYEFAMACKNKPSVN-CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK--ALISVGRMGECNKILKAM 434 (671)
Q Consensus 358 l~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m 434 (671)
.++++.+.. |+.. .+..+.. ..++......+.. .+...|++++|.+.++++
T Consensus 111 ~~~~~~~~~--~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 111 SLRAWLLSQ--PQYEQLGSVNLQ------------------------ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp HHHHHHHTS--TTTTTC--------------------------------------------CCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CccHHHHHHHhH------------------------HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 999998642 2211 1111100 0011111112212 367788999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 042546 435 EEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514 (671)
Q Consensus 435 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~ 514 (671)
.+.. +.+..++..+...|.+.|++++|.+.++++.+.. +.+..+|..+...+...|++++|.+.++++.+ .. +.+.
T Consensus 165 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~ 240 (327)
T 3cv0_A 165 LEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD-IN-PGYV 240 (327)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCH
T ss_pred HhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cC-CCCH
Confidence 8765 4578889999999999999999999999988764 34678899999999999999999999999887 32 3357
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-------------WHTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-------------~~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
.++..+...|.+.|++++|.+.|++.... .| +...|..+...+.+.|+.++|.+++++.
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 78888999999999999999999988763 23 3678888888999999999998887643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-11 Score=130.48 Aligned_cols=381 Identities=10% Similarity=-0.048 Sum_probs=205.9
Q ss_pred CCCCHHHHHHHHHHHHccCcHHHHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCCC
Q 042546 160 ERLSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKK-----G--YGV-ASHVRNKMTEKFEKEGLESDLEKLKGIFATGSID 231 (671)
Q Consensus 160 ~~~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~~ 231 (671)
.......||.+-..+...|+.++|++.|++-.+. + ..| ...+|+.+-..|...|++++|....+
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~-------- 118 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVD-------- 118 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHH--------
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHH--------
Confidence 3345678999999999999999999999886442 1 122 35678888888888877776654221
Q ss_pred ChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 042546 232 NSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVL 311 (671)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~ 311 (671)
+|+++........ -.....+++.+-.++
T Consensus 119 ---------------------------------------------------ka~~i~~~~~~~~-~~~~~~~~~~~g~~~ 146 (472)
T 4g1t_A 119 ---------------------------------------------------KVKHVCEKFSSPY-RIESPELDCEEGWTR 146 (472)
T ss_dssp ---------------------------------------------------HHHHHHHHSCCSS-CCCCHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHhHhccccc-chhhHHHHHHHHHHH
Confidence 1222211111000 011234444444444
Q ss_pred Hcc--CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH---HHhCCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 042546 312 GRE--DCIDRFWKVLDEMRSKGYEME-METCVKVLGR---FSERNMVKEAVDLYEFAMACKNKPS-VNCCTFLLRKIVVS 384 (671)
Q Consensus 312 ~~~--g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~---~~~~g~~~~a~~l~~~m~~~g~~p~-~~~~~~ll~~~~~~ 384 (671)
.+. +++++|.+.|++..+. .|+ ...+..+... +...++.++|++.+++..+. .|+ ...+..+-..+..
T Consensus 147 ~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~- 221 (472)
T 4g1t_A 147 LKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHK- 221 (472)
T ss_dssp HHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHH-
T ss_pred HHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHH-
Confidence 433 3567777777776654 233 3333333333 33456666677766665532 222 1111111111111
Q ss_pred CcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 385 KQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANE 464 (671)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 464 (671)
.+...|+.++|.+.+++..... +.+..++..+...|.+.|++++|..
T Consensus 222 --------------------------------~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 222 --------------------------------MREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp --------------------------------CC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------------------HHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHH
Confidence 1122344555666665555433 3445555556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 042546 465 FMDHMEASGSDVGDKMWVSLIKGHCV-------------------AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525 (671)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~-------------------~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 525 (671)
.+++..+.. +-+..++..+...|.. .+..++|...+++..+ .. +.+..++..+...|.
T Consensus 269 ~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 269 LLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE-AN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH-HC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh-cC-CchhhhhhhHHHHHH
Confidence 666655442 1233334433333321 2235677888887766 22 223446777888999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHH----HHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHH
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPWHTT----YEELIK-NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDD 600 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~~~~----~~~li~-~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~ 600 (671)
..|++++|...|++.... .|+... +..+.. .+.+.|+.++|++.|++..+ +.|+.... .+..+.
T Consensus 346 ~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~------~~~~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREK------EKMKDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHH------HHHHHH
T ss_pred HhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHH------HHHHHH
Confidence 999999999999998763 333322 222222 23468999999999998886 45654322 222345
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHH
Q 042546 601 AIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADV 652 (671)
Q Consensus 601 A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 652 (671)
+.++++......+.+..+|..+..+|...|++++|.+.|++..+.....|.+
T Consensus 415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 5666777677677788999999999999999999999999987654444433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-10 Score=127.26 Aligned_cols=413 Identities=13% Similarity=0.085 Sum_probs=281.6
Q ss_pred CCHHHHHHHHHHHHccCcHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHcCCC---CChHHH
Q 042546 162 LSSKTYNLMLRIVGVHGLVQEFWGLVDVMKKKGY--GVASHVRNKMTEKFEKEGLESDLEKLKGIFATGSI---DNSIEK 236 (671)
Q Consensus 162 ~~~~~~n~li~~~~~~g~~~~a~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~ 236 (671)
.|...|+.++.- .. +-=.++.+.-....+ .-|+.-....+++|...|...++.++.+-..-.+. .+.-..
T Consensus 951 ~d~~lW~~vl~~---~n--~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 951 KDPELWGSVLLE---SN--PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred cCHHHHHHHhcC---Cc--HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHH
Confidence 577789887732 11 222234443332211 22444456778899999999998887765442222 111111
Q ss_pred HHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCC
Q 042546 237 VASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDC 316 (671)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~ 316 (671)
.. ++....+. ........+.+.+-...+..-..+.. .|.+++|..+|++.. -.....+.++. ..++
T Consensus 1026 nl-Li~tAIka--D~~Rv~eyI~kLd~~d~~eIA~Iai~--lglyEEAf~IYkKa~------~~~~A~~VLie---~i~n 1091 (1630)
T 1xi4_A 1026 NL-LILTAIKA--DRTRVMEYINRLDNYDAPDIANIAIS--NELFEEAFAIFRKFD------VNTSAVQVLIE---HIGN 1091 (1630)
T ss_pred HH-HHHHHHHh--ChhhHHHHHHHhhhccHHHHHHHHHh--CCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhh
Confidence 11 22222222 22334444444442222222222233 399999999999752 23333444543 7788
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Q 042546 317 IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVV 396 (671)
Q Consensus 317 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~ 396 (671)
+++|.++.++.. +..+|..+-.++...|++++|.+.|.+. -|...|.-+...+.+.|+.+ .+.+.+
T Consensus 1092 ldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyE--EAIeyL 1157 (1630)
T 1xi4_A 1092 LDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWE--ELVKYL 1157 (1630)
T ss_pred HHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHH--HHHHHH
Confidence 999999998652 5789999999999999999999999764 46777888899998888544 444555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 042546 397 RVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV 476 (671)
Q Consensus 397 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 476 (671)
....+.. ++....+.++.+|++.+++++..... + .++...|..+...|...|++++|..+|...
T Consensus 1158 ~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------- 1221 (1630)
T 1xi4_A 1158 QMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 1221 (1630)
T ss_pred HHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------
Confidence 4444433 33334446999999999988644442 2 467778888999999999999999999984
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 477 GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556 (671)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 556 (671)
..|..+...|.+.|++++|.+.+++.. +..+|..+-.+|...|++..|......+. .+...+..+
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeel 1286 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIV------VHADELEEL 1286 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHH
Confidence 379999999999999999999998763 45889999999999999999988776542 255677899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHH--hcCChHHHHHHHHHhhhCCC-----CCHHHHHHHHHH
Q 042546 557 IKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVS--KSGTSDDAIAFLKGMTSKRF-----PSMSVVLCLFAA 625 (671)
Q Consensus 557 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~--~~g~~~~A~~~~~~m~~~~~-----p~~~~~~~l~~~ 625 (671)
+..|.+.|.+++|+.+++.... +.|....+ ..+++ +-+++.++.++|..-..-.+ -+...|.-++..
T Consensus 1287 i~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1287 INYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred HHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHH
Confidence 9999999999999999987763 44444222 23343 55677777777764433111 356789999999
Q ss_pred HHHcCCHHHHHHHHH
Q 042546 626 FFQARRHSEAQDLLS 640 (671)
Q Consensus 626 ~~~~g~~~~A~~~~~ 640 (671)
|.+.|+++.|....-
T Consensus 1365 Y~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1365 YDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHhcccHHHHHHHHH
Confidence 999999999984443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-12 Score=123.22 Aligned_cols=233 Identities=13% Similarity=0.047 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS--DVG----DKMWV 482 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~ 482 (671)
..+..+...+...|++++|...|++..+.. .+...|..+...|...|++++|.+.+++..+... .++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 357788889999999999999999999877 7889999999999999999999999999876431 122 57899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
.+...+...|++++|.+.|++..+ . .|+. ..+.+.|++++|...++..... .+.+...|..+...+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~-~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLT-E--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-H--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh-c--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHH
Confidence 999999999999999999999987 3 3443 3466778999999999998763 22345678888889999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 042546 563 QRGFKDALSLLCLMKDHGFPPFV-DPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638 (671)
Q Consensus 563 ~g~~~~A~~l~~~m~~~~~~p~~-~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 638 (671)
.|++++|++.+++..+. .|+. ..+ ...+...|++++|...++...+..+.+...|..+..+|.+.|++++|.+.
T Consensus 152 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999874 3443 222 55667899999999999999987777899999999999999999999999
Q ss_pred HHhchHhh------hccHHHHHHHH
Q 042546 639 LSKCPRYV------RNHADVLNLLY 657 (671)
Q Consensus 639 ~~~m~~~~------~~~~~~~~l~~ 657 (671)
+++..+.. +...++...+.
T Consensus 230 ~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 230 LDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHhChhhcCCCchHHHHHHHH
Confidence 99977654 44455554443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-11 Score=117.21 Aligned_cols=227 Identities=7% Similarity=-0.013 Sum_probs=184.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRK 380 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~ 380 (671)
...|..+...+.+.|++++|...|++..+.. .+..+|..+...+...|++++|.+.+.+..+.. |
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~----------- 69 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--R----------- 69 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H-----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--c-----------
Confidence 4678888899999999999999999999887 788999999999999999999999999877421 0
Q ss_pred HHhcCcccHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 381 IVVSKQLDMRLFSKVVRVFRENGNVLT----DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456 (671)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 456 (671)
...++ ..++..+...|.+.|++++|...|++..+.. |+. ..+.+.
T Consensus 70 ----------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~ 118 (258)
T 3uq3_A 70 ----------------------EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKL 118 (258)
T ss_dssp ----------------------HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHH
T ss_pred ----------------------ccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHH
Confidence 00011 2457888899999999999999999998753 443 346677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 042546 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKF 536 (671)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 536 (671)
|++++|...++++.... +.+...|..+...+...|++++|.+.+++..+ .. +.+..++..+...|.+.|++++|...
T Consensus 119 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88999999999988753 23456788888899999999999999999887 32 33577888899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 537 VHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 537 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
|+...+. .+.+...|..+...|.+.|++++|.+.+++..+
T Consensus 196 ~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9998864 234577888888899999999999999988765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-10 Score=109.61 Aligned_cols=238 Identities=11% Similarity=-0.023 Sum_probs=195.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMWV 482 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~ 482 (671)
+..++..+-..|...|++++|...|++..+ +.+...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 345677788889999999999999999988 3456788889999999 999999999999998875 788888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 483 SLIKGHCV----AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS----KNRAIDACKFVHNCVREYDLKPWHTTYE 554 (671)
Q Consensus 483 ~li~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 554 (671)
.+...|.. .++.++|.+.|++..+ .+ +...+..+-..|.. .++.++|.+.|++..+. + +...+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 150 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACD-LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCT 150 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHH-cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHH
Confidence 89999999 9999999999999998 55 67788889999999 99999999999999874 3 567777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 042546 555 ELIKNLLV----QRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK----SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626 (671)
Q Consensus 555 ~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~----~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~ 626 (671)
.+-..|.. .+++++|++.+++..+.+.......+...|.. .+++++|...+++..+.++ ...+..+...|
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 228 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 88888888 89999999999999887532222233556667 8999999999999888653 67788899999
Q ss_pred HH----cCCHHHHHHHHHhchHhhhccHHHHHHHHhhhcC
Q 042546 627 FQ----ARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSG 662 (671)
Q Consensus 627 ~~----~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~~ 662 (671)
.+ .|++++|.+.+++..+. ..+.+...+..+...
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~l~~~~~~ 266 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKL--GAKGACDILKQLKIK 266 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHH--TCHHHHHHHHTCCCC
T ss_pred HcCCCcccCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHH
Confidence 99 99999999999987653 344555555555433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.43 E-value=5.2e-11 Score=113.91 Aligned_cols=208 Identities=10% Similarity=-0.009 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..+...|...|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|.+.++++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 456666666666777777777776666543 3455566666666666666666666666665543 23455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 567 (671)
...|++++|.+.++++.+ .+..| +...+..+...|...|++++|...|++.... ...+...+..+...|...|+++
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHH
Confidence 666666666666666654 33333 3444555555566666666666666655542 1223444455555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhh
Q 042546 568 DALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR 647 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 647 (671)
+|.+.++++ .+..+.+...+..+...+.+.|++++|.++++++.....
T Consensus 193 ~A~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 193 PARQYYDLF--------------------------------AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHH--------------------------------HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHH--------------------------------HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 555555554 443334445555555555566666666666655554444
Q ss_pred ccHHHH
Q 042546 648 NHADVL 653 (671)
Q Consensus 648 ~~~~~~ 653 (671)
..+.+.
T Consensus 241 ~~~~~~ 246 (252)
T 2ho1_A 241 GSLEYQ 246 (252)
T ss_dssp TSHHHH
T ss_pred CCHHHH
Confidence 444333
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-10 Score=111.41 Aligned_cols=208 Identities=8% Similarity=-0.077 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 371 VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450 (671)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 450 (671)
...+..+...+...|+.+ .+...++...+.. +.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~--~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTE--QAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTG--GGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChH--HHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 456677777788888655 3445555554432 4467789999999999999999999999998765 45788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 042546 451 FRLSSAGKKDEANEFMDHMEASGSDV-GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529 (671)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 529 (671)
..|...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.+++..+ .. +.+...+..+...|...|+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR-LN-RNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHcCC
Confidence 99999999999999999998733345 456788899999999999999999999987 33 3357788999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588 (671)
Q Consensus 530 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~ 588 (671)
+++|...|+..... ...+...+..+...+...|+.++|.+.++++.+. .|+...+
T Consensus 191 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 191 YVPARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp HHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred HHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 99999999999763 3456778888888999999999999999999864 4554433
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-10 Score=107.37 Aligned_cols=198 Identities=9% Similarity=-0.022 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..+...+...|++++|.+.|++..+.. +.+...|..+...|...|++++|.+.++++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 456677777788888888888888777654 3456677777777888888888888888776653 33566777777777
Q ss_pred Hhc-CCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 489 CVA-GDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 489 ~~~-g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
... |++++|.+.++++.+ .+..|+ ...+..+..+|...|++++|...|+++.+. .+.+...+..+...+.+.|++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 777 788888887777766 444343 456666777777777777777777777653 222455666666667777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhhhC
Q 042546 567 KDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~~~ 611 (671)
++|.+.+++..+.....+...+ ...+...|+.++|..+++.+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777776666543210111111 22223455555555555555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-11 Score=111.45 Aligned_cols=198 Identities=12% Similarity=0.023 Sum_probs=104.0
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHH
Q 042546 334 MEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNS 413 (671)
Q Consensus 334 p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (671)
++...+..+...+.+.|++++|...|++..+. . +.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~------------------------------------p~~~~a~~~ 44 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE--N------------------------------------PQDPEALYW 44 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--S------------------------------------SSCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C------------------------------------CCCHHHHHH
Confidence 34455556666666666666666666665532 1 122234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA-----------GKKDEANEFMDHMEASGSDVGDKMWV 482 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~ 482 (671)
+...+.+.|++++|...|++..+.. +.+...|..+...|.+. |++++|...|++..+.. +-+...|.
T Consensus 45 lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~ 122 (217)
T 2pl2_A 45 LARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHL 122 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 5555666666666666666665543 33455566666666666 66666666666665542 12345555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
.+-..+...|++++|.+.|++..+ .. .+...+..+..+|...|++++|...|++..+. -+.+...+..+...+.+
T Consensus 123 ~lg~~~~~~g~~~~A~~~~~~al~-~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 123 QRGLVYALLGERDKAEASLKQALA-LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHh-cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence 566666666666666666666655 33 45555566666666666666666666665542 12234455555555666
Q ss_pred cCCHHHHHHHHHHH
Q 042546 563 QRGFKDALSLLCLM 576 (671)
Q Consensus 563 ~g~~~~A~~l~~~m 576 (671)
.|++++|++.+++.
T Consensus 198 ~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 198 KGKAEEAARAAALE 211 (217)
T ss_dssp --------------
T ss_pred ccCHHHHHHHHHHH
Confidence 66666666655543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-11 Score=117.75 Aligned_cols=185 Identities=12% Similarity=0.015 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
++..+...|...|++++|.+.|++..+.. +.+..+|..+...|.+.|++++|.+.|+++.+. .|+.......+..+.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~ 155 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAE 155 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 34455555555566666666665555443 234555555666666666666666666665543 233333333333444
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcC
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-----HTTYEELIKNLLVQR 564 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g 564 (671)
..|++++|...+++... . ..++...+ .++..+...++.++|...+...... .|+ ...|..+...|.+.|
T Consensus 156 ~~~~~~~A~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g 229 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFE-K-SDKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLG 229 (275)
T ss_dssp HHHCHHHHHHHHHHHHH-H-SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCHHHHHHHHHHHHh-c-CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcC
Confidence 45666666666655544 1 11222222 2444455555555666655554321 111 245555555566666
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHhcCChHHHHHHH
Q 042546 565 GFKDALSLLCLMKDHGFPP-FVDPFIKYVSKSGTSDDAIAFL 605 (671)
Q Consensus 565 ~~~~A~~l~~~m~~~~~~p-~~~t~~~~l~~~g~~~~A~~~~ 605 (671)
++++|.+.+++..+. .| +...+...+...|++++|++.+
T Consensus 230 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 230 DLDSATALFKLAVAN--NVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHTT--CCTTCHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHhhHHHH
Confidence 666666666665543 23 2333334444555555554443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=9e-11 Score=109.80 Aligned_cols=210 Identities=13% Similarity=0.066 Sum_probs=175.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 042546 441 ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLL 520 (671)
Q Consensus 441 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l 520 (671)
.+...|..+...+...|++++|.+.|+++.+.. +.+...|..+...|...|++++|.+.++++.+ .. +.+..++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l 82 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALS-IK-PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH-hC-CCChHHHHHH
Confidence 346678889999999999999999999998764 34678899999999999999999999999987 32 3467788999
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HH---HHHHHHh
Q 042546 521 VNTYCSK-NRAIDACKFVHNCVREYDLKPW-HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-DP---FIKYVSK 594 (671)
Q Consensus 521 i~~~~~~-g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-~t---~~~~l~~ 594 (671)
...|... |++++|...|+.+.. .+..|+ ...|..+...+...|++++|++.++++.+. .|+. .. +...+.+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKML 159 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHH
Confidence 9999999 999999999999986 333443 567888899999999999999999998874 3443 22 2556678
Q ss_pred cCChHHHHHHHHHhhhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHH
Q 042546 595 SGTSDDAIAFLKGMTSKRF-PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLL 656 (671)
Q Consensus 595 ~g~~~~A~~~~~~m~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~ 656 (671)
.|++++|...++++....+ .+...+..+...+.+.|+.++|..+++.+....+..+.+..++
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999999999999998777 7888898999999999999999999999876666666665544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.6e-11 Score=112.07 Aligned_cols=195 Identities=11% Similarity=0.016 Sum_probs=96.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
+...+..+...+.+.|++++|...|++..+.. +.+...|..+...+.+.|++++|...+++..+ .. +.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVA-RT-PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCcHHHHHHHH
Confidence 33344444444444444444444444444332 12333444444444444444444444444443 11 11233344444
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---
Q 042546 522 NTYCSK-----------NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP--- 587 (671)
Q Consensus 522 ~~~~~~-----------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t--- 587 (671)
..|... |++++|...|++..+. -+-+...|..+-..|...|++++|++.|++..+.. .+...
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 444444 6666666666666542 11234556666666666777777777777666554 23222
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 588 FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 588 ~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
+...+...|++++|+..+++..+..|.+...+..+..++.+.|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 23445566777777777777776666677778888888888888888888777654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-11 Score=117.53 Aligned_cols=220 Identities=13% Similarity=0.010 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
.++..+...|...|++++|...|++..+.. +.+..+|..+...|...|++++|.+.|++..+.. +.+..++..+...|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence 357778888999999999999999998765 4578899999999999999999999999998764 33578889999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
.+.|++++|.+.++++.+ . .|+.......+..+...|+.++|...+...... ..++...+. ++..+...++.++
T Consensus 122 ~~~g~~~~A~~~~~~a~~-~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQ-D--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGWN-IVEFYLGNISEQT 195 (275)
T ss_dssp HHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHhccHHHHHHHHHHHHH-h--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHHH-HHHHHHHhcCHHH
Confidence 999999999999999987 2 344444445555566779999999999887764 334444444 6666777888899
Q ss_pred HHHHHHHHHhCCCCC--C-HH---HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 569 ALSLLCLMKDHGFPP--F-VD---PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 569 A~~l~~~m~~~~~~p--~-~~---t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
|++.+++..+..... + .. .+...+.+.|++++|...|++.....+.+...+ ..++...|++++|.+-+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 999998876432110 1 11 124556788999999999999988765453333 55677788888887765
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-09 Score=112.15 Aligned_cols=364 Identities=10% Similarity=-0.027 Sum_probs=214.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhC-----
Q 042546 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSK-----G--YEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMAC----- 365 (671)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~----- 365 (671)
.....||.|-..+...|++++|++.|++..+. + ..| ...+|+.+...|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888888899999998888776431 1 123 4678888888899999999998888876531
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCC
Q 042546 366 -KNKP-SVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA---LISVGRMGECNKILKAMEEGGFI 440 (671)
Q Consensus 366 -g~~p-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~ 440 (671)
...+ ...++..+-.++.+.+..+.+.+...++...+.. +-+...+..+..+ +...++.++|.+.+++..+.. +
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1112 2344544444555555545555666666555432 2233344444433 445677888998888877654 4
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 042546 441 ASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA 516 (671)
Q Consensus 441 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~ 516 (671)
.+..++..+...+.. .|+.++|.+.+++..... +.+..++..+...|...|++++|.+.+++..+ .. +-+..+
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE-YI-PNNAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH-hC-CChHHH
Confidence 556666666655554 467889999999887764 45677888899999999999999999999887 22 224455
Q ss_pred HHHHHHHHHhc-------------------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 517 IDLLVNTYCSK-------------------NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 517 ~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
+..+..+|... +..++|...|....... +.+...+..+...|...|++++|++.|++..
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 55555554321 23567777787776542 2334567778888999999999999999988
Q ss_pred hCCCCCCHHH-----HHH-HHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHhch
Q 042546 578 DHGFPPFVDP-----FIK-YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFF--------QARRHSEAQDLLSKCP 643 (671)
Q Consensus 578 ~~~~~p~~~t-----~~~-~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~--------~~g~~~~A~~~~~~m~ 643 (671)
+....|.... +.. .+.+.|+.++|+..+++..+..+.+.... ..+..+. ...+..++...+-.+-
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~-~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~ 440 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE-KMKDKLQKIAKMRLSKNGADSEALHVLAFLQ 440 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH-HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7544333221 111 22467899999999998887554333221 1111111 1111122222222233
Q ss_pred HhhhccHHHHHHHHhhhcCC-CCCCCcC
Q 042546 644 RYVRNHADVLNLLYSKKSGG-DSAPAVT 670 (671)
Q Consensus 644 ~~~~~~~~~~~l~~~m~~~g-~~p~~~t 670 (671)
...+...++++.|++..+.| .-|++.+
T Consensus 441 ~~~g~~~~A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 441 ELNEKMQQADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHHCC---------------------
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence 34467888999999988876 5666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.6e-11 Score=114.16 Aligned_cols=246 Identities=11% Similarity=0.020 Sum_probs=189.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG--DKMWVSLIKGH 488 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~ 488 (671)
+......+...|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++..+....++ ..+|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 4556677889999999999999998765 34555888899999999999999999999988432222 34588999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
...|++++|.+.|++..+ .. +.+..++..+...|...|++++|...|++.... .+.+...|..+...+...+++++
T Consensus 85 ~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVD-RD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHTTCHHHHHHHHHHHHH-HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcccHHHHHHHHHHHHh-cC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 32 224568899999999999999999999998753 23355666666624445569999
Q ss_pred HHHHHHHHHhCCCCCCHH-HH---HHHHHhcCC---hHHHHHHHHHhhhCC--CCC------HHHHHHHHHHHHHcCCHH
Q 042546 569 ALSLLCLMKDHGFPPFVD-PF---IKYVSKSGT---SDDAIAFLKGMTSKR--FPS------MSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 569 A~~l~~~m~~~~~~p~~~-t~---~~~l~~~g~---~~~A~~~~~~m~~~~--~p~------~~~~~~l~~~~~~~g~~~ 633 (671)
|++.+++..+. .|+.. .+ ...+...|+ .++|...+++..+.. .|+ ...|..+...|.+.|+++
T Consensus 161 A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 161 ADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999999874 45532 22 344455666 888988888877631 233 367888999999999999
Q ss_pred HHHHHHHhchHhhhccHHHHHHHHhhhcCC
Q 042546 634 EAQDLLSKCPRYVRNHADVLNLLYSKKSGG 663 (671)
Q Consensus 634 ~A~~~~~~m~~~~~~~~~~~~l~~~m~~~g 663 (671)
+|.+.+++.....+..+.+.+....+...+
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 999999999888888888888887776554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-11 Score=113.86 Aligned_cols=215 Identities=13% Similarity=0.060 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
....|..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|.+.++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 33456666666666777777777777666543 3455666666666666666666666666665543 234555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
.+...|++++|.+.++++.+ .. +.+...+..+...|.+.|++++|...+++.... ...+...+..+...+.+.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~--- 172 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALR-AG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANE--- 172 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH---
T ss_pred HHHHhccHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHc---
Confidence 66666666666666666655 21 223445555555566666666666666655542 122334444444444444
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh
Q 042546 567 KDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV 646 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 646 (671)
|++++|...++++....+.+...|..+..+|.+.|++++|.+.+++..+..
T Consensus 173 -----------------------------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 173 -----------------------------GMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp -----------------------------TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred -----------------------------CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 455555555554444444455566666666666677777776666665555
Q ss_pred hccHHHHHHHHhh
Q 042546 647 RNHADVLNLLYSK 659 (671)
Q Consensus 647 ~~~~~~~~l~~~m 659 (671)
+..+.+...+..+
T Consensus 224 p~~~~~~~~~~~l 236 (243)
T 2q7f_A 224 PDHMLALHAKKLL 236 (243)
T ss_dssp TTCHHHHHHHTC-
T ss_pred cchHHHHHHHHHH
Confidence 5555554444433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-10 Score=111.21 Aligned_cols=244 Identities=12% Similarity=-0.001 Sum_probs=159.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042546 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382 (671)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 382 (671)
.+......+.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.+++..+.+..|+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------- 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA----------- 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC-----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH-----------
Confidence 34455666777888888888888877653 123446777777888888888888888877753211111
Q ss_pred hcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEA 462 (671)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 462 (671)
....|..+...|...|++++|.+.|++..+.. +.+..+|..+...|...|++++|
T Consensus 73 ------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 127 (272)
T 3u4t_A 73 ------------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLA 127 (272)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHH
Confidence 12235666777778888888888888877654 34557778888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 042546 463 NEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR---AIDACKFVHN 539 (671)
Q Consensus 463 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~ 539 (671)
.+.|++..+.. +.+...|..+...+...+++++|.+.|++..+ .. +.+...+..+..++...|+ .++|...|++
T Consensus 128 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 128 IQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE-LK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 88888776652 33455566665234444588888888888776 21 2235566666666766676 6777777777
Q ss_pred HHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 540 CVREYDLKPW------HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588 (671)
Q Consensus 540 m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~ 588 (671)
..+...-.|+ ...|..+...|.+.|++++|.+.+++..+. .|+....
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a 257 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKA 257 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHH
Confidence 6653222233 145666777777777777777777777653 4554433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-11 Score=123.94 Aligned_cols=219 Identities=16% Similarity=0.084 Sum_probs=160.9
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 410 MLNSVLKALISVG---RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA----GKKDEANEFMDHMEASGSDVGDKMWV 482 (671)
Q Consensus 410 ~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~ 482 (671)
.+..|-..|.+.| +.++|.+.|++..+.| .++...+..|...|... +++++|.+.|++.. .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 6778888888899 8999999999999888 56777667777777654 79999999999987 43 445555
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 483 SLIKG-H--CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN-----RAIDACKFVHNCVREYDLKPWHTTYE 554 (671)
Q Consensus 483 ~li~~-~--~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~~p~~~~~~ 554 (671)
.+-.. + ...++.++|.+.|++..+ .| +...+..|-..|. .| +.++|.+.|.... .-+...+.
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~ 322 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADY 322 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHH
Confidence 55555 3 568999999999999988 66 5667777777776 45 9999999998775 22566677
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----hcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 042546 555 ELIKNLLV----QRGFKDALSLLCLMKDHGFPPFVDPFIKYVS----KSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF 626 (671)
Q Consensus 555 ~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~----~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~ 626 (671)
.|-..|.. ..+.++|.++|++..+.|...-...+..+|. ...+.++|..+|+...+.+.++.......+...
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~ 402 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAP 402 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77766666 4499999999999998876443344444443 346899999999999887765544443334333
Q ss_pred HHcCCHHHHHHHHHhch
Q 042546 627 FQARRHSEAQDLLSKCP 643 (671)
Q Consensus 627 ~~~g~~~~A~~~~~~m~ 643 (671)
...++.++|.++.++-.
T Consensus 403 ~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 403 LTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 33456667777777644
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-08 Score=108.87 Aligned_cols=219 Identities=8% Similarity=-0.004 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN-EFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 504 (671)
.+..+|++....- +-+...|-..+.-+.+.|+.++|. ++|++.... ++.+...|-..+...-+.|++++|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556787777543 457788888888888889988896 999988764 3446666777888888899999999999988
Q ss_pred HHcCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh
Q 042546 505 VEKEG---------TSHA------------GYAIDLLVNTYCSKNRAIDACKFVHNCVRE-YDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 505 ~~~~g---------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~~~~~~~li~~~~~ 562 (671)
.+ .. -.|+ ..+|...+....+.|.++.|..+|....+. ....+ ..|...+..-.+
T Consensus 405 l~-~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~--~lyi~~A~lE~~ 481 (679)
T 4e6h_A 405 ID-RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP--DIYLENAYIEYH 481 (679)
T ss_dssp HH-HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCT--HHHHHHHHHHHT
T ss_pred HH-HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHH
Confidence 76 21 0132 336777777777889999999999998763 12223 333332222233
Q ss_pred c-CCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHHcCCHHH
Q 042546 563 Q-RGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFP---SMSVVLCLFAAFFQARRHSE 634 (671)
Q Consensus 563 ~-g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p---~~~~~~~l~~~~~~~g~~~~ 634 (671)
. ++.+.|.++|+...+. .|+...+ +..+...|+.+.|..+|+......++ ....|...++.-.+.|+.+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred hCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3 4589999999988765 4544433 44445789999999999998886652 44678888888888999999
Q ss_pred HHHHHHhchHhhhccHH
Q 042546 635 AQDLLSKCPRYVRNHAD 651 (671)
Q Consensus 635 A~~~~~~m~~~~~~~~~ 651 (671)
+.++.+++.+..+..+.
T Consensus 560 ~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHhCCCCcH
Confidence 99999998876655443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=7.1e-11 Score=112.10 Aligned_cols=208 Identities=10% Similarity=-0.064 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 371 VNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450 (671)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 450 (671)
...+..+-..+...|+.+ .+...++...+ ..+.+...+..+...|.+.|++++|.+.|++..+.. +.+..++..+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~--~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYE--KAAEAFTKAIE-ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHT-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHH--HHHHHHHHHHH-hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344555555555555443 34445555544 234467788999999999999999999999998765 45788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 451 FRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRA 530 (671)
Q Consensus 451 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~ 530 (671)
..|...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+ . .+.+...+..+...|.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE-L-NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-h-CCccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998765 45778899999999999999999999999987 3 234677888999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 531 IDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFI 589 (671)
Q Consensus 531 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~ 589 (671)
++|.+.|++.... ...+..+|..+...|.+.|++++|.+.++++.+. .|+.....
T Consensus 176 ~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~ 230 (243)
T 2q7f_A 176 DEALSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLAL 230 (243)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHH
Confidence 9999999999874 3345778889999999999999999999998863 55544433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-09 Score=104.88 Aligned_cols=226 Identities=12% Similarity=-0.037 Sum_probs=177.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042546 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414 (671)
Q Consensus 335 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (671)
+..++..+-..+...|++++|.+.|++..+. + +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~------------------------------------~~~a~~~l 44 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----K------------------------------------ENSGCFNL 44 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----T------------------------------------CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C------------------------------------CHHHHHHH
Confidence 5677888888889999999999999988752 1 11235556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 415 LKALIS----VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 415 i~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+-.
T Consensus 45 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 118 (273)
T 1ouv_A 45 GVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGG 118 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHH
Confidence 666777 899999999999988865 67888888888988 999999999999988764 6788888888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 487 GHCV----AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS----KNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558 (671)
Q Consensus 487 ~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 558 (671)
.|.. .++.++|.+.|++..+ .+ +...+..+-..|.. .++.++|...|++..+. + +...+..+-.
T Consensus 119 ~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 190 (273)
T 1ouv_A 119 IYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGN 190 (273)
T ss_dssp HHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHH
Confidence 8888 8999999999999888 55 55667777788887 89999999999988764 2 4577777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHh----cCChHHHHHHHHHhhhCCCC
Q 042546 559 NLLV----QRGFKDALSLLCLMKDHGFPPFVDPFIKYVSK----SGTSDDAIAFLKGMTSKRFP 614 (671)
Q Consensus 559 ~~~~----~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~----~g~~~~A~~~~~~m~~~~~p 614 (671)
.|.. .+++++|++.+++..+.+..+....+...|.+ .++.++|.+.+++..+.+++
T Consensus 191 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 191 MYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8888 89999999999998876532111223455566 88999999999888776543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.6e-11 Score=118.08 Aligned_cols=237 Identities=14% Similarity=0.057 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEG-------GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS------GS 474 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 474 (671)
..++..+...|...|++++|..+|+++.+. ..+....++..+...|...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456888899999999999999999998863 22344567888999999999999999999988753 21
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---
Q 042546 475 DV-GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-----GTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREY--- 544 (671)
Q Consensus 475 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--- 544 (671)
.| ...++..+...|...|++++|.+.+++..+.. +-.| ....+..+...|...|++++|.+.|++.....
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 35678889999999999999999999988621 2223 34567888889999999999999999887531
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCH---HHHH-------HHHHhcCChHHHHHH
Q 042546 545 --DLKP-WHTTYEELIKNLLVQRGFKDALSLLCLMKDH-------GFPPFV---DPFI-------KYVSKSGTSDDAIAF 604 (671)
Q Consensus 545 --~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------~~~p~~---~t~~-------~~l~~~g~~~~A~~~ 604 (671)
+..| ...++..+...|...|++++|.+.++++.+. ...+.. .... ..+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 2347788889999999999999999988752 111111 1111 222345666677777
Q ss_pred HHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 605 LKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 605 ~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
++......+.+...|..+..+|.+.|++++|.+++++..+
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7776665555678899999999999999999999988653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-09 Score=110.51 Aligned_cols=225 Identities=10% Similarity=0.002 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK-KDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
..|+.+...+.+.|++++|+..|++..+.. +-+...|+.+...+.+.|+ +++|+..|++..+.. .-+...|..+...
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 357778888999999999999999999865 5568899999999999997 999999999998875 3467889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCH
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV-QRGF 566 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~ 566 (671)
+...|++++|+..|+++.+ .. .-+...|..+-.++.+.|++++|...|+++.+. -.-+...|+.+...+.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~-ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILN-QD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHH-hC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999987 22 236778888999999999999999999999874 23367789999988988 6665
Q ss_pred HHH-----HHHHHHHHhCCCCCCHHHH----HHHHHhcC--ChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC-----
Q 042546 567 KDA-----LSLLCLMKDHGFPPFVDPF----IKYVSKSG--TSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR----- 630 (671)
Q Consensus 567 ~~A-----~~l~~~m~~~~~~p~~~t~----~~~l~~~g--~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g----- 630 (671)
++| ++.+++..+ +.|+.... ..+|.+.| ++++|...++++ +..+.+...+..+.++|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 777 588888876 45665332 34456667 689999999988 666678899999999999975
Q ss_pred ----CHHHHHHHHHhc
Q 042546 631 ----RHSEAQDLLSKC 642 (671)
Q Consensus 631 ----~~~~A~~~~~~m 642 (671)
..++|.+++++.
T Consensus 329 ~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 329 NKEDILNKALELCEIL 344 (382)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 358999999998
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.1e-10 Score=115.91 Aligned_cols=302 Identities=10% Similarity=-0.000 Sum_probs=215.6
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEME----METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNC 373 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~ 373 (671)
.+....+......+.+.|++++|...|++..+.+. .+ ..+|..+...+...|++++|...+++....
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------- 76 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL-------- 76 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------
Confidence 56677788888899999999999999999988732 23 357888889999999999999999987631
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHH
Q 042546 374 CTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL-TDAMLNSVLKALISVGRMGECNKILKAMEEGGF-IAS----SNMKS 447 (671)
Q Consensus 374 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~ 447 (671)
... .+..+ ...++..+...|...|++++|...+++..+..- .++ ..++.
T Consensus 77 -------~~~------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 131 (406)
T 3sf4_A 77 -------ART------------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131 (406)
T ss_dssp -------HHH------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -------HHh------------------ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 000 01111 123577788889999999999999988764210 112 44788
Q ss_pred HHHHHHHhcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 448 KIAFRLSSAGK--------------------KDEANEFMDHMEAS----GSDV-GDKMWVSLIKGHCVAGDLDKAADCFQ 502 (671)
Q Consensus 448 ~li~~~~~~g~--------------------~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 502 (671)
.+...|...|+ +++|.+.+++..+. +..| ...++..+...|...|++++|.+.++
T Consensus 132 ~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88889999999 99999998876432 1111 13467888889999999999999999
Q ss_pred HHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 503 KMVEKEGTSHA----GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW----HTTYEELIKNLLVQRGFKDALSLLC 574 (671)
Q Consensus 503 ~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~ 574 (671)
+..+...-.++ ..++..+...|...|++++|...+++......-.++ ..++..+...|...|++++|.+.++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 88751111122 336788888999999999999999887643111112 4577788888999999999999998
Q ss_pred HHHhCCC-CCCH-------HHHHHHHHhcCChHHHHHHHHHhhhC----CC--CCHHHHHHHHHHHHHcCCHH
Q 042546 575 LMKDHGF-PPFV-------DPFIKYVSKSGTSDDAIAFLKGMTSK----RF--PSMSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 575 ~m~~~~~-~p~~-------~t~~~~l~~~g~~~~A~~~~~~m~~~----~~--p~~~~~~~l~~~~~~~g~~~ 633 (671)
+..+... .++. ..+...+...|++++|...+++..+. +. ....++..+...+...|+..
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 8764211 1111 12245557889999999999887652 11 23556778888888888764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=2.4e-09 Score=108.30 Aligned_cols=247 Identities=8% Similarity=-0.020 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042546 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415 (671)
Q Consensus 336 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 415 (671)
...|..+...+.+.|++++|++.|++..+. .| -+..+|+.+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P------------------------------------~~~~a~~~~g 138 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NA------------------------------------ANYTVWHFRR 138 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CT------------------------------------TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--Cc------------------------------------cCHHHHHHHH
Confidence 567778888889999999999999998752 22 2334577888
Q ss_pred HHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 416 KALISVGR-MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494 (671)
Q Consensus 416 ~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (671)
.++...|+ +++|+..|++..+.. +.+...|+.+...+.+.|++++|+..|+++.+.. .-+...|..+..++.+.|++
T Consensus 139 ~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 139 VLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCCh
Confidence 88899996 999999999999876 5578899999999999999999999999998875 34778899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CH
Q 042546 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCS-KNRAIDA-----CKFVHNCVREYDLKPWHTTYEELIKNLLVQR--GF 566 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~-~g~~~~A-----~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~ 566 (671)
++|++.++++.+ .. .-+...|+.+..+|.+ .|..++| ...|++.... -.-+...|+.+...+.+.| ++
T Consensus 217 ~eAl~~~~~al~-l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 217 DNELQYVDQLLK-ED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp TTHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGC
T ss_pred HHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccch
Confidence 999999999988 32 2256788888888888 6665777 4778887763 2235668888888888877 68
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH----HHHHHhcC---------ChHHHHHHHHHh-hhCCCCCHHHHHHHHHHHHHc
Q 042546 567 KDALSLLCLMKDHGFPPFVDPF----IKYVSKSG---------TSDDAIAFLKGM-TSKRFPSMSVVLCLFAAFFQA 629 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g---------~~~~A~~~~~~m-~~~~~p~~~~~~~l~~~~~~~ 629 (671)
++|++.+.++ ...|+.... ...|.+.| .+++|+++++++ .+..+.....|..+...+...
T Consensus 293 ~~a~~~~~~~---~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 293 PNLLNQLLDL---QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHH---TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 9999999887 345665332 44555543 358999999999 777776778888887776553
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=9.4e-09 Score=101.43 Aligned_cols=218 Identities=10% Similarity=0.011 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHc-------cCCh-------HHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 042546 282 KKALIFFRWAEESGFVKHDESSYNAMASVLGR-------EDCI-------DRFWKVLDEMRSKGYEM-EMETCVKVLGRF 346 (671)
Q Consensus 282 ~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p-~~~t~~~li~~~ 346 (671)
+.|..+|++..... +.+...|..+...+.+ .|++ ++|..+|++..+. +.| +...|..+...+
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHH
Confidence 57778888876533 5678888888877763 4775 7888888887763 134 456778888888
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHH
Q 042546 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDA-MLNSVLKALISVGRMG 425 (671)
Q Consensus 347 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~ 425 (671)
.+.|++++|.++|++..+. .|+. .. +|..+...+.+.|+++
T Consensus 110 ~~~~~~~~A~~~~~~al~~--~p~~------------------------------------~~~~~~~~~~~~~~~~~~~ 151 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI--EDID------------------------------------PTLVYIQYMKFARRAEGIK 151 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS--SSSC------------------------------------THHHHHHHHHHHHHHHCHH
T ss_pred HhcCCHHHHHHHHHHHHhc--cccC------------------------------------ccHHHHHHHHHHHHhcCHH
Confidence 8888888888888877752 2211 11 4666666677777788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 426 ECNKILKAMEEGGFIASSNMKSKIAFRLS-SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 504 (671)
+|..+|++..+.. +++...|........ ..|++++|.++|++..+.. +-+...|..++..+.+.|+.++|..+|++.
T Consensus 152 ~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 152 SGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888777654 234444443333322 2577777777777766542 235566777777777777777777777777
Q ss_pred HHcC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 505 VEKE-GTSH--AGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 505 ~~~~-g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
.+ . .+.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 230 l~-~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 230 LT-SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HH-SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred Hh-ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66 3 2344 3456666666666677777777777776653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.6e-08 Score=99.84 Aligned_cols=215 Identities=8% Similarity=0.002 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLS-------SAGKK-------DEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
++|..+|++..+.. +.+...|..+...+. +.|++ ++|..+|++..+.-.+-+...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888877653 456677877777765 35775 8888888888873112355678888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHA-GY-AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLL-VQRGFK 567 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~ 567 (671)
.|++++|.++|++..+ +.|+ .. .|..+...+.+.|++++|..+|++..+. ..++...|........ ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHH
Confidence 8999999999988876 3443 22 7888888888889999999999888753 2234445544333322 368899
Q ss_pred HHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCC--CC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 042546 568 DALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKR--FP--SMSVVLCLFAAFFQARRHSEAQDLL 639 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~--~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 639 (671)
+|.++|++..+. .|+...+ +..+.+.|+.++|..+|++..... +| ....|..++..+.+.|+.++|..++
T Consensus 187 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999888763 4554332 455567889999999998888852 33 5678888888888899999999988
Q ss_pred HhchHhhh
Q 042546 640 SKCPRYVR 647 (671)
Q Consensus 640 ~~m~~~~~ 647 (671)
+++.+..+
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 88765444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.5e-09 Score=110.49 Aligned_cols=338 Identities=11% Similarity=-0.053 Sum_probs=211.8
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-----
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI---DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN----- 350 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----- 350 (671)
|++++|.+.|+...+. .+...+..+-..|...|+. ++|.+.|++..+. +...+..+-..+...+
T Consensus 17 g~~~~A~~~~~~aa~~----g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAEL----GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHH----TCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHH
T ss_pred CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCc
Confidence 8999999999998763 2445556666667778888 8999999988854 4555666666455554
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDM-RLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429 (671)
Q Consensus 351 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (671)
++++|...|++..+.|... .+..|-..|...+..+. ..+.+.+......|. ...+..+...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHH
Confidence 7899999999999866543 44445555555443221 223333333333443 3456677778888885555444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Q 042546 430 ILKAMEEGGFIASSNMKSKIAFRLSSAG---KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA----GDLDKAADCFQ 502 (671)
Q Consensus 430 ~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~a~~~~~ 502 (671)
......+.-...+...+..|...|.+.| +.++|.+.|++..+.| .++...+..+-..|... ++.++|.++|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 4333332211333448888999999999 9999999999999888 46666666677777655 79999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHH
Q 042546 503 KMVEKEGTSHAGYAIDLLVNT-Y--CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR-----GFKDALSLLC 574 (671)
Q Consensus 503 ~m~~~~g~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~l~~ 574 (671)
+.. .-+...+..|-.. | ...++.++|.+.|.+..+. | +...+..|-..|. .| +.++|.+.|+
T Consensus 242 ~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 242 KIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 975 2244556666665 3 4689999999999998864 4 5667777777776 55 9999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhchH
Q 042546 575 LMKDHGFPPFVDPFIKYVSK----SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ----ARRHSEAQDLLSKCPR 644 (671)
Q Consensus 575 ~m~~~~~~p~~~t~~~~l~~----~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~ 644 (671)
+.. .|...-...+...|.. ..+.++|..+|+...+.+.++ ....|...|.. ..+.++|..++++..+
T Consensus 312 ~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 312 KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 887 4322211222333333 348999999999988876544 44566666664 4588999999988554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-09 Score=112.98 Aligned_cols=133 Identities=13% Similarity=-0.015 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CCHH
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG----DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTS----HAGY 515 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~----p~~~ 515 (671)
++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|.+.+++..+...-. ....
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 444455555555555555555555432110 011 1244445555555555555555555443300000 0123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
++..+...|...|++++|...|++......-.++ ..++..+...|.+.|++++|.+.+++..
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444445555555555555555544321000001 1234444444445555555555555443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.7e-10 Score=114.03 Aligned_cols=247 Identities=12% Similarity=0.029 Sum_probs=166.4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 042546 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSK-------GYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSV 371 (671)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 371 (671)
.+..+|..+...+...|++++|..+|+++.+. .......++..+...|...|++++|...+++..+.
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 98 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI------ 98 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------
Confidence 34678889999999999999999999998773 22234677888999999999999999999987631
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHH
Q 042546 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG------GF-IASSN 444 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~~~~~ 444 (671)
..............++..+...|...|++++|...|++..+. +- +....
T Consensus 99 ------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 154 (311)
T 3nf1_A 99 ------------------------REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK 154 (311)
T ss_dssp ------------------------HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ------------------------HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 000000011112345788889999999999999999988753 21 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CC
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEAS------GSDV-GDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-------GT 510 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------g~ 510 (671)
.+..+...|...|++++|.+.++++.+. +..| ...++..+...|...|++++|.+.++++.+ . ..
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~ 233 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT-RAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHHHHC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 7888899999999999999999998764 2122 245688888999999999999999998875 2 11
Q ss_pred CCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 511 SHA-------GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 511 ~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
.+. ...+..+...+...+.+.+|...+...... ...+..+|..+...|.+.|++++|.+.+++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 112222333344455566666666665431 222445777888888888999999888887754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.5e-10 Score=116.07 Aligned_cols=274 Identities=14% Similarity=0.036 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042546 337 ETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLK 416 (671)
Q Consensus 337 ~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 416 (671)
..+..+...+...|++++|...|++..+. .|+.... -..++..+..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~--------------------------------~~~~~~~lg~ 94 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRT--------------------------------LSAIYSQLGN 94 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHH--------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhH--------------------------------HHHHHHHHHH
Confidence 34445667788999999999999998863 2221100 0023667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHH
Q 042546 417 ALISVGRMGECNKILKAMEEG----G-FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS----GS-DVGDKMWVSLIK 486 (671)
Q Consensus 417 ~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~li~ 486 (671)
.|...|++++|...|++..+. + ......++..+...|...|++++|.+.+++..+. +- .....++..+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 174 (411)
T 4a1s_A 95 AYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGN 174 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 888899999999998887642 1 1223467788888899999999999999887543 11 112456788888
Q ss_pred HHHhcCC-----------------HHHHHHHHHHHHHc---CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 042546 487 GHCVAGD-----------------LDKAADCFQKMVEK---EGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545 (671)
Q Consensus 487 ~~~~~g~-----------------~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (671)
.|...|+ +++|.+.+++..+. .+-.+ ...++..+...|...|++++|.+.|++......
T Consensus 175 ~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 254 (411)
T 4a1s_A 175 VYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAR 254 (411)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 8899999 89999888876541 11111 234677788889999999999999988765311
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH-------HHHHHHHHhcCChHHHHHHHHHhhhCC-
Q 042546 546 LKPW----HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFP-PFV-------DPFIKYVSKSGTSDDAIAFLKGMTSKR- 612 (671)
Q Consensus 546 ~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~-------~t~~~~l~~~g~~~~A~~~~~~m~~~~- 612 (671)
-.++ ...+..+...|...|++++|.+.+++..+.... .+. ..+...+...|++++|..++++.....
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 255 EFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1112 227778888899999999999999887642111 111 122455678999999999999877621
Q ss_pred -CC----CHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 613 -FP----SMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 613 -~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.. ....|..+..+|.+.|++++|.+.+++...
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 245788899999999999999999998654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-09 Score=112.48 Aligned_cols=211 Identities=11% Similarity=-0.019 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK-DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502 (671)
Q Consensus 424 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 502 (671)
++++...+++..... +.+...|..+...|...|++ ++|.+.|++..+.. +-+...|..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666776655433 34677888888888888888 89988888887764 3357788888888888999999999998
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CC
Q 042546 503 KMVEKEGTSHAGYAIDLLVNTYCSK---------NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ--------RG 565 (671)
Q Consensus 503 ~m~~~~g~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~ 565 (671)
+..+ +.|+...+..+...|... |++++|...|++..+. ..-+...|..+..+|... |+
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 8876 347777888888888888 8899999999888764 233567788888888888 88
Q ss_pred HHHHHHHHHHHHhCCCCC---CH-HH---HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 042546 566 FKDALSLLCLMKDHGFPP---FV-DP---FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDL 638 (671)
Q Consensus 566 ~~~A~~l~~~m~~~~~~p---~~-~t---~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 638 (671)
+++|++.|++..+. .| +. .. +...|...|++++|...|++..+..+.+...+..+..++...|++++|.+.
T Consensus 237 ~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988864 44 22 22 245667889999999999998887777888899999999999999999988
Q ss_pred HHhch
Q 042546 639 LSKCP 643 (671)
Q Consensus 639 ~~~m~ 643 (671)
+.++.
T Consensus 315 ~~~~~ 319 (474)
T 4abn_A 315 KGKTK 319 (474)
T ss_dssp TTTCC
T ss_pred hcccc
Confidence 87764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-09 Score=107.90 Aligned_cols=267 Identities=10% Similarity=0.018 Sum_probs=129.1
Q ss_pred CCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHh
Q 042546 278 GDEPKKALIFFRWAEESGFVKHD----ESSYNAMASVLGREDCIDRFWKVLDEMRSK----GYEM-EMETCVKVLGRFSE 348 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~ 348 (671)
.|++++|...|++..+.. +.+ ...|..+...|...|++++|.+.+++..+. +-.| ...++..+...+..
T Consensus 18 ~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp TTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 366666666666665431 222 245556666666666666666666654332 1111 13455556666666
Q ss_pred CCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----
Q 042546 349 RNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR----- 423 (671)
Q Consensus 349 ~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----- 423 (671)
.|++++|...+.+..+.. -..+.. .....++..+...|...|+
T Consensus 96 ~g~~~~A~~~~~~al~~~---------------~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~~~ 143 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDIS---------------RELNDK-----------------VGEARALYNLGNVYHAKGKSFGCP 143 (338)
T ss_dssp TTCHHHHHHHHHHHHHHH---------------HHTTCH-----------------HHHHHHHHHHHHHHHHHHHTSSSS
T ss_pred ccCHHHHHHHHHHHHHHH---------------HHhcCc-----------------hHHHHHHHHHHHHHHHcCcccccc
Confidence 666666666666554210 000000 0001234445555555555
Q ss_pred ---------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----H
Q 042546 424 ---------------MGECNKILKAMEEG----GF-IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG----D 478 (671)
Q Consensus 424 ---------------~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~ 478 (671)
+++|.+.+++..+. +- .....++..+...|...|++++|.+.+++..+... .++ .
T Consensus 144 ~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 223 (338)
T 3ro2_A 144 GPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 223 (338)
T ss_dssp SCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 56666655554321 10 11123455555666666666666666665542100 011 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----H
Q 042546 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA----GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW----H 550 (671)
Q Consensus 479 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~ 550 (671)
.++..+...+...|++++|.+.+++..+...-.++ ..++..+...|...|++++|...+++......-..+ .
T Consensus 224 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 303 (338)
T 3ro2_A 224 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 303 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 24555555566666666666666555431000011 334455555556666666666665554332100011 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 551 TTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
.++..+...|.+.|++++|.+.+++..+
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 304 RACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2444455555555555555555555543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-09 Score=108.00 Aligned_cols=273 Identities=13% Similarity=-0.007 Sum_probs=192.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042546 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417 (671)
Q Consensus 338 t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (671)
.+......+...|++++|...|+++.+. .|+.... -...+..+...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~--------------------------------~~~~~~~l~~~ 52 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKT--------------------------------LSAIYSQLGNA 52 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHH--------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHH--------------------------------HHHHHHHHHHH
Confidence 4445566788899999999999998863 2221100 01246677788
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 042546 418 LISVGRMGECNKILKAMEEG----GFI-ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG----DKMWVSLIKG 487 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~ 487 (671)
|...|++++|.+.+++..+. +-. ....++..+...|...|++++|...+++..+... .++ ..++..+...
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 132 (338)
T 3ro2_A 53 YFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 132 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 88999999999998876542 111 2255778888899999999999999988754211 122 3477888888
Q ss_pred HHhcCC--------------------HHHHHHHHHHHHHc---CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 488 HCVAGD--------------------LDKAADCFQKMVEK---EGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 488 ~~~~g~--------------------~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
+...|+ +++|.+.+++..+. .+-.| ...++..+...|...|++++|...+++..+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 899999 99999888876541 11111 2346777888899999999999999887643
Q ss_pred CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH-------HHHHHHHHhcCChHHHHHHHHHhhhC
Q 042546 544 YDLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMKDHGF-PPFV-------DPFIKYVSKSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 544 ~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-~p~~-------~t~~~~l~~~g~~~~A~~~~~~m~~~ 611 (671)
..-.++ ..++..+...+...|++++|.+.+++..+... .++. ..+...+...|++++|...+++....
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111122 23777888889999999999999998764211 1111 11245567899999999999887652
Q ss_pred CC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 612 RF--P----SMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 612 ~~--p----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.+ . ....+..+...|.+.|++++|.+.+++..+
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 11 1 245788899999999999999999998654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.4e-09 Score=112.02 Aligned_cols=266 Identities=11% Similarity=0.021 Sum_probs=194.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhC
Q 042546 279 DEPKKALIFFRWAEESGFVKHD----ESSYNAMASVLGREDCIDRFWKVLDEMRSK----GYEM-EMETCVKVLGRFSER 349 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~ 349 (671)
|++++|...|++..... +.+ ..+|..+...|...|++++|...|++.... +-.| ...++..+...+...
T Consensus 23 g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 100 (406)
T 3sf4_A 23 GDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 100 (406)
T ss_dssp TCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence 99999999999987642 233 367888999999999999999999986543 2122 255778888999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------
Q 042546 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR------ 423 (671)
Q Consensus 350 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------ 423 (671)
|++++|...+.+..+.. -..+ + ......++..+...|...|+
T Consensus 101 g~~~~A~~~~~~al~~~---------------~~~~--~---------------~~~~~~~~~~l~~~~~~~g~~~~~~~ 148 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDIS---------------RELN--D---------------KVGEARALYNLGNVYHAKGKSFGCPG 148 (406)
T ss_dssp TCHHHHHHHHHHHHHHH---------------HHHT--C---------------HHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred CCHHHHHHHHHHHHHHH---------------Hhcc--c---------------ccchHHHHHHHHHHHHHcCCcccccc
Confidence 99999999999876310 0000 0 00012356777778888888
Q ss_pred --------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 042546 424 --------------MGECNKILKAMEEG----GF-IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG----DK 479 (671)
Q Consensus 424 --------------~~~A~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~ 479 (671)
+++|...+++..+. +- .....++..+...|...|++++|.+.+++..+... .++ ..
T Consensus 149 ~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (406)
T 3sf4_A 149 PQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 228 (406)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 88998888876532 11 11235788888999999999999999998764210 122 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVEK---EGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW----HT 551 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~ 551 (671)
++..+...|...|++++|...+++..+. .+..+. ..++..+...|...|++++|...+++......-.++ ..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 7888889999999999999999987651 111111 557788889999999999999999987653211222 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 552 TYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
++..+...|...|++++|.+.+++..+
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777888889999999999999998753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-08 Score=91.67 Aligned_cols=167 Identities=11% Similarity=0.040 Sum_probs=135.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
+..+|..+-..|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|...+....... ..+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44668888899999999999999999988765 4567888889999999999999999999887664 345667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
.+...++++.|.+.+.+..+ . .+-+...+..+...|.+.|++++|.+.|++..+. -+.+...|..+...|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~-~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA-L-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHH-h-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCH
Confidence 88889999999999988876 2 2335667888888889999999999999988764 233567788888888899999
Q ss_pred HHHHHHHHHHHhC
Q 042546 567 KDALSLLCLMKDH 579 (671)
Q Consensus 567 ~~A~~l~~~m~~~ 579 (671)
++|++.|++..+.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999888763
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3.9e-06 Score=90.71 Aligned_cols=213 Identities=12% Similarity=0.012 Sum_probs=154.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 394 KVVRVFRENGNVLTDAMLNSVLKALISVGRMGECN-KILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
.++++.... .+.+...|-..+..+...|+.++|. ++|++.... .+.+...|-..+....+.|++++|.++|+.+.+.
T Consensus 330 ~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 330 YVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344444433 3446677888888888889999996 999998864 3456667888888899999999999999998753
Q ss_pred CC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C-CCCCHHHHHHHHHHHHhc-C
Q 042546 473 GS---------DVG------------DKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-G-TSHAGYAIDLLVNTYCSK-N 528 (671)
Q Consensus 473 g~---------~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-g-~~p~~~~~~~li~~~~~~-g 528 (671)
.. .|+ ...|...+....+.|..+.|.++|.+..+ . + ..+......+.+. .+. +
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~-~~~~~~~~lyi~~A~lE--~~~~~ 484 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR-LKKLVTPDIYLENAYIE--YHISK 484 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-TGGGSCTHHHHHHHHHH--HTTTS
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCChHHHHHHHHHH--HHhCC
Confidence 10 142 24688888888888999999999999988 4 2 3344444333333 344 4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHH----HHHHHhcCChHHHHH
Q 042546 529 RAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF-VDPF----IKYVSKSGTSDDAIA 603 (671)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~t~----~~~l~~~g~~~~A~~ 603 (671)
+.+.|.++|+...+++ .-+...|...++-....|+.+.|..+|++.......+. ...+ +..-.+.|+.+.+.+
T Consensus 485 d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5899999999998763 34566677888878889999999999999987643222 2233 333368899999999
Q ss_pred HHHHhhhCCC
Q 042546 604 FLKGMTSKRF 613 (671)
Q Consensus 604 ~~~~m~~~~~ 613 (671)
+.+++....|
T Consensus 563 v~~R~~~~~P 572 (679)
T 4e6h_A 563 LEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHhCC
Confidence 9999988654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-08 Score=90.49 Aligned_cols=166 Identities=13% Similarity=0.078 Sum_probs=103.1
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379 (671)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 379 (671)
+...|..+-..|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|...+......
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-------------- 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-------------- 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 45667777777777777777777777766653 124666677777777777777777777666532
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK 459 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 459 (671)
.+.+...+..+...+...++++.|...+.+..+.. +.+...+..+...|.+.|++
T Consensus 69 ------------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~ 123 (184)
T 3vtx_A 69 ------------------------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEH 123 (184)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred ------------------------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCc
Confidence 11122234444455566666667766666665543 34555666666666666777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 460 DEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 460 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
++|++.|++..+.. +.+..+|..+...|.+.|++++|.+.|++..+
T Consensus 124 ~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 124 DKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777666666543 23455666666666666666666666666655
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.10 E-value=5e-09 Score=110.04 Aligned_cols=217 Identities=9% Similarity=-0.045 Sum_probs=168.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI-DRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 357 (671)
..+++++..++..... .+.+...|..+-..|...|++ ++|.+.|++..+.. +-+...|..+...|.+.|++++|.+
T Consensus 82 ~~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4577788888877643 255789999999999999999 99999999998863 2258899999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHH
Q 042546 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV---------GRMGECN 428 (671)
Q Consensus 358 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~ 428 (671)
.|++..+. .|+. ..+..+...|... |++++|.
T Consensus 159 ~~~~al~~--~p~~-------------------------------------~~~~~lg~~~~~~~~~~~~~~~g~~~~A~ 199 (474)
T 4abn_A 159 CFSGALTH--CKNK-------------------------------------VSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199 (474)
T ss_dssp HHHHHHTT--CCCH-------------------------------------HHHHHHHHHHTTCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHhh--CCCH-------------------------------------HHHHHHHHHHHHhccCChhhhhhhHHHHH
Confidence 99998864 3442 3344455555555 8899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 042546 429 KILKAMEEGGFIASSNMKSKIAFRLSSA--------GKKDEANEFMDHMEASGSD--VGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 429 ~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
+.|++..+.. +.+...|..+..+|... |++++|.+.|++..+.... -+...|..+...|...|++++|.
T Consensus 200 ~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~ 278 (474)
T 4abn_A 200 RQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEAL 278 (474)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999988765 45678888888888888 8899999999988875310 36778888888888889999998
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 499 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
+.|++..+ .. +-+...+..+..++...|++++|.+.+..+
T Consensus 279 ~~~~~al~-l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 279 EGFSQAAA-LD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHH-HC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH-hC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 88888876 22 224556777777777888888877655443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.2e-09 Score=106.96 Aligned_cols=230 Identities=8% Similarity=-0.027 Sum_probs=168.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-----CHHHHH
Q 042546 414 VLKALISVGRMGECNKILKAMEEGG-FIA----SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DV-----GDKMWV 482 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g-~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~-----~~~~~~ 482 (671)
....+...|++++|...|++..+.- -.+ ...+|..+...|...|++++|...+++..+.-. .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4556788999999999999987631 012 246788899999999999999999998764211 11 235788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCC-CCCHHHHH
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHA----GYAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDL-KPWHTTYE 554 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-~p~~~~~~ 554 (671)
.+...|...|++++|.+.+++..+...-.++ ..++..+...|...|++++|.+.|++.... .+. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988751111122 246788889999999999999999987651 122 22356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCH----HHHHHHHHhcCC---hHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 042546 555 ELIKNLLVQRGFKDALSLLCLMKDHGF---PPFV----DPFIKYVSKSGT---SDDAIAFLKGMTSKRFPSMSVVLCLFA 624 (671)
Q Consensus 555 ~li~~~~~~g~~~~A~~l~~~m~~~~~---~p~~----~t~~~~l~~~g~---~~~A~~~~~~m~~~~~p~~~~~~~l~~ 624 (671)
.+...|.+.|++++|.+.+++..+... .|.. ..+...+...|+ +++|..++++... .+.....+..+..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-YADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 888999999999999999998764311 1111 112344457788 7888888877621 1123457788999
Q ss_pred HHHHcCCHHHHHHHHHhchH
Q 042546 625 AFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 625 ~~~~~g~~~~A~~~~~~m~~ 644 (671)
.|.+.|++++|.+.+++...
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999988553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-08 Score=90.25 Aligned_cols=163 Identities=11% Similarity=-0.005 Sum_probs=135.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 46677788889999999999999887654 4567888889999999999999999999988764 346778888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA 569 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 569 (671)
..|++++|.+.++++.+ . .+.+...+..+...|...|++++|.+.+++.... ...+...+..+...+...|++++|
T Consensus 88 ~~~~~~~A~~~~~~~~~-~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAE-A-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHh-c-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999887 3 2346677888888899999999999999998764 234567888888889999999999
Q ss_pred HHHHHHHHh
Q 042546 570 LSLLCLMKD 578 (671)
Q Consensus 570 ~~l~~~m~~ 578 (671)
.+.+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.03 E-value=3.6e-09 Score=102.58 Aligned_cols=223 Identities=14% Similarity=0.072 Sum_probs=140.6
Q ss_pred hcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 042546 420 SVGRMGECNKILKAMEE-------GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS------GSDV-GDKMWVSLI 485 (671)
Q Consensus 420 ~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~li 485 (671)
..|++++|...|++..+ ...+....++..+...|...|++++|...+++..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555555555554433 222234567778888888888888888888887643 2122 345677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCC-CHHH
Q 042546 486 KGHCVAGDLDKAADCFQKMVEKE------GT-SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY-----DLKP-WHTT 552 (671)
Q Consensus 486 ~~~~~~g~~~~a~~~~~~m~~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~p-~~~~ 552 (671)
..|...|++++|.+.+++..+ . .- .....++..+...|...|++++|...|++..... ...| ...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALE-IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH-HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 888888888888888888766 2 11 2235667778888888999999999888876530 1122 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHH---HHHHH-h------cCChHHHHHHHHHhhhCCCCC
Q 042546 553 YEELIKNLLVQRGFKDALSLLCLMKDH-------GFPPFVDPF---IKYVS-K------SGTSDDAIAFLKGMTSKRFPS 615 (671)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~l~~~m~~~-------~~~p~~~t~---~~~l~-~------~g~~~~A~~~~~~m~~~~~p~ 615 (671)
+..+...|...|++++|.+.+++..+. ...+....+ ...+. . ...+.++...++......+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 778888888999999999999887642 112222111 11121 1 222334444444333322334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 616 MSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 616 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
...+..+..+|.+.|++++|.+++++..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678899999999999999999998754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.7e-08 Score=101.56 Aligned_cols=295 Identities=9% Similarity=-0.011 Sum_probs=178.8
Q ss_pred CCChHHHHHHHHHHHHcC-CC--CCCHHHHHHHHHHHH--ccCChHHHH-----------HHHHHHHHcCCCCCHHH---
Q 042546 278 GDEPKKALIFFRWAEESG-FV--KHDESSYNAMASVLG--REDCIDRFW-----------KVLDEMRSKGYEMEMET--- 338 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~-~~--~~~~~~~~~li~~~~--~~g~~~~A~-----------~~~~~m~~~g~~p~~~t--- 338 (671)
.+++++|..+.+.+.... .. .++...|-.++..-. -.++++.+. +.++.+.... ++...
T Consensus 25 ~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~l~ 102 (383)
T 3ulq_A 25 RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGLLE 102 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhHHH
Confidence 489999999999986532 22 233344444433211 122333333 6666655431 11111
Q ss_pred ---HHHHHHHHHhCCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042546 339 ---CVKVLGRFSERNMVKEAVDLYEFAMACKN-KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414 (671)
Q Consensus 339 ---~~~li~~~~~~g~~~~a~~l~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (671)
+......+...|++++|...|++..+.-- .++... ...++..+
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------------------------------~a~~~~~l 149 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE---------------------------------KAEFFFKM 149 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH---------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH---------------------------------HHHHHHHH
Confidence 12245567789999999999999875310 122110 11346667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHH
Q 042546 415 LKALISVGRMGECNKILKAMEEG--GF----IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG----DKMWVS 483 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~--g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~ 483 (671)
...|...|++++|...+++..+. .. .....+++.+...|...|++++|.+.|++..+... .++ ..++..
T Consensus 150 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 229 (383)
T 3ulq_A 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 77778888888888888776542 11 11245677777888888888888888877653210 112 236777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCCCHHHHHHH
Q 042546 484 LIKGHCVAGDLDKAADCFQKMVEK---EGT-SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY---DLKPWHTTYEEL 556 (671)
Q Consensus 484 li~~~~~~g~~~~a~~~~~~m~~~---~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p~~~~~~~l 556 (671)
+...|...|++++|.+.+++..+. .+. .....++..+...|.+.|++++|...+++..... +-......+..+
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 309 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFL 309 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 788888888888888888776651 133 2335567777788888888888888887765421 111112234556
Q ss_pred HHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHH----HHHHHHhcCChHHHHHHHHHhhh
Q 042546 557 IKNLLVQRG---FKDALSLLCLMKDHGFPPFVDP----FIKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 557 i~~~~~~g~---~~~A~~l~~~m~~~~~~p~~~t----~~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
-..|...|+ +++|+.++++. +..|+... +...|...|++++|..++++...
T Consensus 310 ~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 310 KSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666777777 66777766665 33333322 24556678888888888877654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.99 E-value=3.6e-07 Score=92.76 Aligned_cols=95 Identities=17% Similarity=0.035 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEG----GFI--A-SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV----GDK 479 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~ 479 (671)
++.+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++........ ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 344445555555555555555554421 111 1 12233444445555555555555555544321110 123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
++..+...+...|++++|...+++..
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444455555555555555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.98 E-value=7.2e-08 Score=86.52 Aligned_cols=166 Identities=12% Similarity=0.066 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042546 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415 (671)
Q Consensus 336 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 415 (671)
...|..+...+...|++++|.+.++++.+. . +.+..++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~------------------------------------~~~~~~~~~~~ 49 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--D------------------------------------AFDVDVALHLG 49 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--T------------------------------------SCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--C------------------------------------ccChHHHHHHH
Confidence 446677788888999999999999887642 1 12334577788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLD 495 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 495 (671)
..+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus 50 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 50 IAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFD 127 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHH
Confidence 88899999999999999988764 4577889999999999999999999999998764 457788899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
+|.+.+++..+ .. +.+...+..+...|...|++++|.+.++...+.
T Consensus 128 ~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 128 EAIDSFKIALG-LR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999987 32 345778889999999999999999999988653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-08 Score=99.55 Aligned_cols=230 Identities=10% Similarity=-0.033 Sum_probs=167.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC-----CHHHHH
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGF-IAS----SNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DV-----GDKMWV 482 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~-----~~~~~~ 482 (671)
....+...|++++|...|++..+.-. .++ ..++..+...|...|++++|...+++..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44556789999999999999875311 123 45788889999999999999999998764211 11 245688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCCHHHHHH
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVEK---EGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDLKPWHTTYEE 555 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~~~~~~~ 555 (671)
.+...|...|++++|.+.|++..+. .+-.+ ...++..+-.+|...|++++|.+.|++.... .+......++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8999999999999999999887651 11111 2346777888999999999999999988751 012223567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC---CCHHHH----HHHHHhcCC---hHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 042546 556 LIKNLLVQRGFKDALSLLCLMKDHGFP---PFVDPF----IKYVSKSGT---SDDAIAFLKGMTSKRFPSMSVVLCLFAA 625 (671)
Q Consensus 556 li~~~~~~g~~~~A~~l~~~m~~~~~~---p~~~t~----~~~l~~~g~---~~~A~~~~~~m~~~~~p~~~~~~~l~~~ 625 (671)
+...|.+.|++++|.+.+++..+.... |..... ...+...|+ +++|..+++.... .+.....+..+...
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~la~~ 345 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL-HAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHH
Confidence 889999999999999999988753221 222222 233346677 7788888876321 11234567789999
Q ss_pred HHHcCCHHHHHHHHHhchH
Q 042546 626 FFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 626 ~~~~g~~~~A~~~~~~m~~ 644 (671)
|.+.|++++|.+.+++...
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.9e-08 Score=89.99 Aligned_cols=212 Identities=9% Similarity=-0.060 Sum_probs=158.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 519 (671)
..|...+......+.+.|++++|.+.|++..+....++...+..+...+...|++++|.+.+++..+ .. +-+...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-KN-YNLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TT-CSHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-hC-cchHHHHHH
Confidence 3567888889999999999999999999998876447888888899999999999999999999987 22 225667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHH
Q 042546 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWH-------TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPF--VDPFIK 590 (671)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~--~~t~~~ 590 (671)
+...|...|++++|...|++..... +.+. ..|..+-..+...|++++|++.|++..+. .|+ ......
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~ 157 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALY 157 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHH
Confidence 9999999999999999999998742 2233 45777777888899999999999999863 666 322211
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHhhh
Q 042546 591 YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660 (671)
Q Consensus 591 ~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~ 660 (671)
.++.. ....+..+++.+......+...|.... ....|.+++|...+++..+..+..+++..++....
T Consensus 158 ~l~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 158 SLGVL-FYNNGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHH-HHHHHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 11110 133455566766665555666665544 34567789999999998877777777777776654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-07 Score=85.23 Aligned_cols=208 Identities=5% Similarity=-0.094 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
|+..+......+.+.|++++|...|++..+..-+++...+..+...|.+.|++++|.+.|++..+.. +.+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566778888899999999999999999887633788888889999999999999999999998764 235567889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAG-----YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW---HTTYEELIK 558 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~ 558 (671)
.|...|++++|.+.+++..+...-.+.. ..|..+-..+...|++++|.+.|++..+ ..|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHHH
Confidence 9999999999999999998722211211 4577777888999999999999999975 4565 456666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 042546 559 NLLVQRGFKDALSLLCLMKDHGFPPFVDPFIK-YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFA 624 (671)
Q Consensus 559 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~-~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~ 624 (671)
.|...| ..+++++...+ ..+...+.. .....+.+++|...+++..+..|.+......+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 665444 34455555432 222233322 2235677899999999998877666666554433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-06 Score=88.85 Aligned_cols=227 Identities=11% Similarity=0.038 Sum_probs=154.5
Q ss_pred CCChHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHcC--C---CC-CHHHHHHHHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHD----ESSYNAMASVLGREDCIDRFWKVLDEMRSKG--Y---EM-EMETCVKVLGRFS 347 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~p-~~~t~~~li~~~~ 347 (671)
.|++++|...|++......-.+| ..++..+...|...|++++|...+++..+.. . .+ ...+++.+...|.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 48999999999988642111233 4578888889999999999999998876531 1 11 2557788888999
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 042546 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVL-TDAMLNSVLKALISVGRMGE 426 (671)
Q Consensus 348 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 426 (671)
..|++++|.+.|.+..+. .-+ .+..+ ...+++.+...|...|++++
T Consensus 194 ~~~~~~~A~~~~~~al~~---------------~~~------------------~~~~~~~~~~~~~lg~~y~~~~~~~~ 240 (378)
T 3q15_A 194 DFKHYDKALPHLEAALEL---------------AMD------------------IQNDRFIAISLLNIANSYDRSGDDQM 240 (378)
T ss_dssp HTTCHHHHHHHHHHHHHH---------------HHH------------------TTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HhCCHHHHHHHHHHHHHH---------------HHH------------------cCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 999999999999887631 000 01000 11357778888999999999
Q ss_pred HHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCC---H
Q 042546 427 CNKILKAMEE-----GGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS----DVGDKMWVSLIKGHCVAGD---L 494 (671)
Q Consensus 427 A~~~~~~m~~-----~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~---~ 494 (671)
|.+.|++..+ .. +....++..+...|.+.|++++|...+++..+... ......+..+-..|...++ +
T Consensus 241 A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 241 AVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999988876 32 33366778888888899999999999888765321 1123345555556666677 6
Q ss_pred HHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 495 DKAADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
++|...+++. +..| ....+..+...|...|+.++|...|+....
T Consensus 320 ~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 320 HDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666542 2222 233455666777777888887777776643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-06 Score=88.08 Aligned_cols=267 Identities=11% Similarity=-0.011 Sum_probs=182.3
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHH
Q 042546 277 LGDEPKKALIFFRWAEESGFVKHDE----SSYNAMASVLGREDCIDRFWKVLDEMRSKGY-EMEM----ETCVKVLGRFS 347 (671)
Q Consensus 277 ~~~~~~~A~~~f~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~li~~~~ 347 (671)
..|++++|...+++...... ..+. .+++.+...+...|++++|.+.+++.....- .++. .++..+...+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 35999999999998776331 2222 2566677788889999999999988765311 1122 33566777788
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCCH
Q 042546 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV--L-TDAMLNSVLKALISVGRM 424 (671)
Q Consensus 348 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 424 (671)
..|++++|.+.+++..+. ....+.. | ....+..+...+...|++
T Consensus 105 ~~G~~~~A~~~~~~al~~---------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQL---------------------------------INEQHLEQLPMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp HTTCHHHHHHHHHHHHHH---------------------------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHHHHHHH---------------------------------HHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence 899999999999887631 0011111 1 123466677888999999
Q ss_pred HHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCH
Q 042546 425 GECNKILKAMEEGGFI----ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWV-----SLIKGHCVAGDL 494 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~-----~li~~~~~~g~~ 494 (671)
++|...+++..+..-. ....++..+...+...|++++|...+++.......++ ...+. ..+..+...|+.
T Consensus 152 ~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 231 (373)
T 1hz4_A 152 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231 (373)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCH
Confidence 9999999988753211 1245778888899999999999999998865321211 11222 233447799999
Q ss_pred HHHHHHHHHHHHcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCCH-HHHHHHHHHHHhcCCHH
Q 042546 495 DKAADCFQKMVEKEGTSH---AGYAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDLKPWH-TTYEELIKNLLVQRGFK 567 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~~-~~~~~li~~~~~~g~~~ 567 (671)
++|...+++... ....+ ....+..+...+...|+.++|...++..... .+..++. ..+..+..++...|+.+
T Consensus 232 ~~A~~~~~~a~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 310 (373)
T 1hz4_A 232 AAAANWLRHTAK-PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 310 (373)
T ss_dssp HHHHHHHHHSCC-CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHhCCC-CCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHH
Confidence 999999998865 33221 1335667778899999999999999887542 1211122 25556667788899999
Q ss_pred HHHHHHHHHHh
Q 042546 568 DALSLLCLMKD 578 (671)
Q Consensus 568 ~A~~l~~~m~~ 578 (671)
+|.+.+++...
T Consensus 311 ~A~~~l~~al~ 321 (373)
T 1hz4_A 311 DAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887753
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.87 E-value=3.6e-07 Score=87.60 Aligned_cols=175 Identities=10% Similarity=0.061 Sum_probs=89.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 462 ANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT-SHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 462 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
|...|++..+.+ .++..++..+..++...|++++|++++.+... .+- .-+...+..++..|.+.|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~-~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID-NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455555554433 34444444555556666666666666665543 222 124445555566666666666666666666
Q ss_pred HHhCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhCCCCCC---HHHHHHHHHhcCChHHHHHHHHHh
Q 042546 541 VREYDLKP-----WHTTYEELIKNLL--VQR--GFKDALSLLCLMKDHGFPPF---VDPFIKYVSKSGTSDDAIAFLKGM 608 (671)
Q Consensus 541 ~~~~~~~p-----~~~~~~~li~~~~--~~g--~~~~A~~l~~~m~~~~~~p~---~~t~~~~l~~~g~~~~A~~~~~~m 608 (671)
.+ ..| +..+...|..++. ..| +..+|..+|+++.+. .|+ ...+..++.+.|++++|++.++.+
T Consensus 163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 234 2334444444422 222 566666666665543 343 223344445666666666666654
Q ss_pred hhC----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 609 TSK----------RFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 609 ~~~----------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
.+. .+.+..+...+|......|+ +|.++++++...
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 432 13345555445544445554 566666665543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.7e-08 Score=95.38 Aligned_cols=212 Identities=16% Similarity=0.068 Sum_probs=139.3
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 042546 335 EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSV 414 (671)
Q Consensus 335 ~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 414 (671)
...++..+...|...|++++|...+.+..+. .........+....++..+
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------------~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAI------------------------------REKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------------------HHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------------------------------HHHHcCCcchHHHHHHHHH
Confidence 4667888888888999999999999887631 0000000011122457888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 042546 415 LKALISVGRMGECNKILKAMEEG------G-FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS------GSDV-GDKM 480 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~------g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~ 480 (671)
...|...|++++|...|++..+. . .+....++..+...|...|++++|.+.+++..+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999988754 1 1234567888999999999999999999998764 1122 3467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCCHH-HHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCCC
Q 042546 481 WVSLIKGHCVAGDLDKAADCFQKMVEKE------GTSHAGY-AIDLLVNTYCSKNRA------IDACKFVHNCVREYDLK 547 (671)
Q Consensus 481 ~~~li~~~~~~g~~~~a~~~~~~m~~~~------g~~p~~~-~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~ 547 (671)
+..+...|...|++++|.+.+++..+.. ...+... .+..+...+...+.. ..+...+..... ...
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCH
Confidence 8889999999999999999999887610 1122222 233333333333322 222222222211 111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 548 PWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 548 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
....++..+...|.+.|++++|.+++++..+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345778888999999999999999998765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.1e-07 Score=101.93 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
...|+.+-..|.+.|++++|.+.|++..+.. +-+..+|+.+...|.+.|++++|++.|++..+.. .-+...|..+...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4578999999999999999999999998765 4567899999999999999999999999998764 3357889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKP-WHTTYEELIKNLLVQRG 565 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 565 (671)
|.+.|++++|.+.|++..+ . .| +...|+.+..+|.+.|++++|.+.|++..+. .| +...|..+...|...|+
T Consensus 87 l~~~g~~~~A~~~~~kAl~-l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l---~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ-I--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL---KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH-H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHH-h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHhhhhhHHHhccc
Confidence 9999999999999999987 2 33 5678999999999999999999999999864 34 46788999999999999
Q ss_pred HHHHHHHHHHHHh
Q 042546 566 FKDALSLLCLMKD 578 (671)
Q Consensus 566 ~~~A~~l~~~m~~ 578 (671)
+++|.+.+++..+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-07 Score=101.45 Aligned_cols=167 Identities=12% Similarity=0.064 Sum_probs=138.6
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTF 376 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ 376 (671)
+-+..+|+.|-..|.+.|++++|++.|++..+. .| +..+|+.+-.+|.+.|++++|++.|++..+. .|+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~------ 75 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT------ 75 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC------
Confidence 334678999999999999999999999998876 34 4788999999999999999999999988752 222
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 377 LLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSA 456 (671)
Q Consensus 377 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 456 (671)
+...|+.+..+|.+.|++++|.+.|++..+.. +-+...|+.+...|.+.
T Consensus 76 ------------------------------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~ 124 (723)
T 4gyw_A 76 ------------------------------FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDS 124 (723)
T ss_dssp ------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred ------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 23457888888999999999999999988765 45678899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 457 GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 457 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
|++++|++.|++..+.. .-+...|..+...+...|++++|.+.+++..+
T Consensus 125 g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 125 GNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp TCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 99999999999988763 23567888899999999999999888887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.4e-07 Score=76.98 Aligned_cols=128 Identities=19% Similarity=0.189 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|.+.++++.+.+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4455556666666666666666665543 3345555566666666666666666666665443 2344455555555566
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.|++++|.+.++++.+ .. +.+..++..+...|.+.|++++|.+.|.++..
T Consensus 82 ~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666655554 21 12344455555555555555555555555543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-06 Score=81.82 Aligned_cols=173 Identities=11% Similarity=-0.020 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGF-IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV-----GDKM 480 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-----~~~~ 480 (671)
+..++..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 334444555666666666666666666554431 124455566666666666666666666666554 34 2344
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----C----CCC
Q 042546 481 WVSLIKGHCV----AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREY----D----LKP 548 (671)
Q Consensus 481 ~~~li~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~----~~p 548 (671)
...+..++.. .++..+|..+|+++.+ -.|+..+...++.++.+.|++++|.+.++.+.+.. . -.-
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~ 253 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQ---TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY 253 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCC
Confidence 4444444222 2266666666666644 12332333344445666666666666666544321 0 012
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588 (671)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~ 588 (671)
|..+...+|......|+ +|.++++++.+. .|+....
T Consensus 254 ~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i 289 (310)
T 3mv2_B 254 KPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHH
T ss_pred CHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHH
Confidence 33344334434444454 566666666653 4554433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.77 E-value=5.9e-07 Score=75.46 Aligned_cols=130 Identities=17% Similarity=0.172 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 524 (671)
.|..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++|.+.++++.+ .. +.+...+..+...|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH-HC-CCchHHHHHHHHHH
Confidence 56778888999999999999999988764 34677888888899999999999999999887 33 34566788888899
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
...|++++|.+.++++... ...+...+..+...+.+.|++++|.+.++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998764 2345678888888999999999999999988753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-06 Score=83.81 Aligned_cols=164 Identities=11% Similarity=0.015 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCCC----H
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVEK---EGTSH-AGYAIDLLVNTYCSK-NRAIDACKFVHNCVREYDLKPW----H 550 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~----~ 550 (671)
+|+.+...|.+.|++++|...+++..+. .|-.+ -..+++.+...|... |++++|...|++......-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 3444444444444444444444443320 00000 023445555555554 6666666666655432100001 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HH---HHHHHhcCChHHHHHHHHHhhhCCC--CCH---
Q 042546 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD------PF---IKYVSKSGTSDDAIAFLKGMTSKRF--PSM--- 616 (671)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~------t~---~~~l~~~g~~~~A~~~~~~m~~~~~--p~~--- 616 (671)
.+|..+...|.+.|++++|++.|++..+........ .+ ..++...|++++|...+++.....+ ++.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 345555666666666666666666666533221110 11 2233456666666666666655322 111
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHhch
Q 042546 617 SVVLCLFAAFF--QARRHSEAQDLLSKCP 643 (671)
Q Consensus 617 ~~~~~l~~~~~--~~g~~~~A~~~~~~m~ 643 (671)
..+..++.+|. ..+++++|.+.|+++.
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 12333445553 3456777777776654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.64 E-value=0.00012 Score=76.69 Aligned_cols=202 Identities=9% Similarity=-0.033 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 425 GECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKM 504 (671)
Q Consensus 425 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 504 (671)
+.+..+|+++.... +.+...|-..+.-+.+.|++++|.+++++.... +.+...|. .|+...+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHH
Confidence 34556777766543 445667777777777788888888888887766 22322222 22222111111 2222
Q ss_pred HHcC--------CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHH
Q 042546 505 VEKE--------GTSH---AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV-QRGFKDALSL 572 (671)
Q Consensus 505 ~~~~--------g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~l 572 (671)
.+.. +..+ ....|...+..+.+.+.++.|..+|+.. ... ..+...|......-.. .++.+.|..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~i 342 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNI 342 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHH
Confidence 2200 0001 1244666666666778899999999988 321 2344455432222222 3468999999
Q ss_pred HHHHHhCCCCCCHH----HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 573 LCLMKDHGFPPFVD----PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 573 ~~~m~~~~~~p~~~----t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
|+...+. .|+.. .|+....+.|+.+.|..+|+.+. .....|...++.-...|+.+.+.++++++.+.
T Consensus 343 fe~al~~--~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 343 FSSGLLK--HPDSTLLKEEFFLFLLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9988764 24432 24555567899999999999873 25778888888778889999999988886643
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=1.2e-06 Score=85.36 Aligned_cols=199 Identities=11% Similarity=-0.027 Sum_probs=142.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEG----GFIAS-SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD-VG----DKM 480 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~ 480 (671)
|......|...|++++|...|.+..+. |-+++ ..+|+.+...|.+.|++++|...+++..+.... .+ ..+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555567788999999999999887642 32222 468899999999999999999999987643111 11 357
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-----
Q 042546 481 WVSLIKGHCVA-GDLDKAADCFQKMVEKEGTSHA----GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH----- 550 (671)
Q Consensus 481 ~~~li~~~~~~-g~~~~a~~~~~~m~~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----- 550 (671)
++.+...|... |++++|.+.|++..+...-..+ ..++..+...|.+.|++++|...|++......-.+..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 88889999996 9999999999988761110111 3568888999999999999999999998642212221
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH------H---HHHHH--hcCChHHHHHHHHHhhhC
Q 042546 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP------F---IKYVS--KSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t------~---~~~l~--~~g~~~~A~~~~~~m~~~ 611 (671)
..|..+..++...|++++|...+++..+ +.|+... + ...+. ..+++++|+..|+.+...
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 1567777888899999999999999875 3444311 1 23332 456788888888776654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.4e-06 Score=80.63 Aligned_cols=99 Identities=12% Similarity=0.001 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS---SNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG-DKMW 481 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~-~~~~ 481 (671)
+...+-.+...+.+.|++++|...|+++.+.. +.+ ...+..+..+|.+.|++++|...|++..+... .|+ ...+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44556667777888999999999999988754 223 56788888889999999999999999887532 122 3456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHH
Q 042546 482 VSLIKGHCV--------AGDLDKAADCFQKMVE 506 (671)
Q Consensus 482 ~~li~~~~~--------~g~~~~a~~~~~~m~~ 506 (671)
..+..++.. .|++++|...|++..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFID 125 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 667777777 8889999999988876
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.5e-06 Score=81.57 Aligned_cols=190 Identities=12% Similarity=0.047 Sum_probs=116.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-H
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG----DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-G 514 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-~ 514 (671)
+.+...+-.+...+.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|...|++..+...-.|. .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 3456667777778888888888888888887753 32 566777888888888888888888888772222222 3
Q ss_pred HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042546 515 YAIDLLVNTYCS--------KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD 586 (671)
Q Consensus 515 ~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 586 (671)
..+..+..+|.. .|++++|...|++......-.+ ..+.++.... ....-+... ..
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~a~~~~~-------~~~~~~~~~--------~~ 152 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE--LVDDATQKIR-------ELRAKLARK--------QY 152 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT--THHHHHHHHH-------HHHHHHHHH--------HH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch--hHHHHHHHHH-------HHHHHHHHH--------HH
Confidence 456666677777 8888888888888876532222 1221110000 000000000 12
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHhchHhhhc
Q 042546 587 PFIKYVSKSGTSDDAIAFLKGMTSKRFP---SMSVVLCLFAAFFQA----------RRHSEAQDLLSKCPRYVRN 648 (671)
Q Consensus 587 t~~~~l~~~g~~~~A~~~~~~m~~~~~p---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~ 648 (671)
.+...|.+.|++++|+..|+.+.+..+. ....+..+..+|.+. |++++|...+++.....++
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 2244556677777777777776664332 344566666666655 6777777777776554433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=4.4e-06 Score=81.08 Aligned_cols=167 Identities=10% Similarity=-0.014 Sum_probs=118.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-H
Q 042546 406 LTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVS-L 484 (671)
Q Consensus 406 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-l 484 (671)
.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...|.+.|++++|...+++.... .|+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 334456667777888888888888888887664 446677888888888888888888888887655 355443322 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564 (671)
Q Consensus 485 i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (671)
...+...++.++|.+.+++..+ . -+.+...+..+...|...|++++|...|.++.....-..+...+..+...|...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~-~-~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVA-E-NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHh-c-CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2235666777778888887766 2 2235667777888888888888888888888764211122567788888888888
Q ss_pred CHHHHHHHHHHHH
Q 042546 565 GFKDALSLLCLMK 577 (671)
Q Consensus 565 ~~~~A~~l~~~m~ 577 (671)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888887777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1e-05 Score=75.30 Aligned_cols=185 Identities=14% Similarity=0.079 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-HHHH
Q 042546 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD-VG-DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG-YAID 518 (671)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~ 518 (671)
+...+..+...+.+.|++++|...|+++.+.... |. ...+..+..+|.+.|++++|.+.|++..+...-.+.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445566677788889999999999988765321 11 3567777888888999999999998887722222322 2333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042546 519 LLVNTYCS------------------KNRAIDACKFVHNCVREYDLKPWHT-TYEELIKNLLVQRGFKDALSLLCLMKDH 579 (671)
Q Consensus 519 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~ 579 (671)
.+..+|.. .|+.++|...|+++.+. .|+.. .+.+... .+ .+...+.+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~------~~~~~~~~- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LV------FLKDRLAK- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HH------HHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HH------HHHHHHHH-
Confidence 34444443 34566666666666543 22221 1111100 00 00000000
Q ss_pred CCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 580 GFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSM---SVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 580 ~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
........+.+.|++++|+..|+++.+..|.+. ..+..+..+|.+.|++++|.+.++.+..
T Consensus 149 ----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 149 ----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 001234556789999999999999998665443 5688899999999999999999988664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-05 Score=72.42 Aligned_cols=98 Identities=10% Similarity=0.040 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH-HHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFI-A-SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV-GD-KMWVSL 484 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~-~~~~~l 484 (671)
..+..+...+.+.|++++|...|+++.+..-. | ....+..+..+|.+.|++++|...|+++.+..... .. ..+-.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34555667788999999999999999875311 1 13577888899999999999999999998764221 11 133333
Q ss_pred HHHHHh------------------cCCHHHHHHHHHHHHH
Q 042546 485 IKGHCV------------------AGDLDKAADCFQKMVE 506 (671)
Q Consensus 485 i~~~~~------------------~g~~~~a~~~~~~m~~ 506 (671)
..++.. .|+.++|...|+++.+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 124 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR 124 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH
Confidence 334433 5789999999999987
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.45 E-value=2e-05 Score=72.41 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 042546 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG----DLDKAADCF 501 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~a~~~~ 501 (671)
+|.+.|++..+. -+...+..+-..|...+++++|.+.|++..+.| +...+..+-..|.. + +.++|.++|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 344555555543 244555555555555666666666666555543 34444444444444 4 555555555
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 042546 502 QKMVEKEGTSHAGYAIDLLVNTYCS----KNRAIDACKFVHNCV 541 (671)
Q Consensus 502 ~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 541 (671)
++..+ .| +...+..|-..|.. .++.++|.+.|.+..
T Consensus 77 ~~A~~-~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 116 (212)
T 3rjv_A 77 EKAVE-AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA 116 (212)
T ss_dssp HHHHH-TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT
T ss_pred HHHHH-CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH
Confidence 55544 33 33344444444444 445555555555544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-05 Score=73.58 Aligned_cols=187 Identities=9% Similarity=0.006 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042546 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417 (671)
Q Consensus 338 t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (671)
.+-.....+.+.|++++|+..|++..+. .|+....-.. ..... .........+.+..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~----~~~~~----------------~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW----TNVDK----------------NSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH----HHSCT----------------TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH----hhhcc----------------hhhhhHHHHHHHHHH
Confidence 3334455677889999999999998753 3332110000 00000 000111223447777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HH
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD--LD 495 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~ 495 (671)
|.+.|++++|...|++..+.. +-+...|..+...|...|++++|...|++..+.. +-+..+|..+...|...|+ .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 888888888888888887765 4567788888888888888888888888887764 2356677777777655543 23
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHH
Q 042546 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYE 554 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 554 (671)
.+...++.... ..|....+...-.++...|++++|...|++..+ +.|+.....
T Consensus 142 ~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~ 194 (208)
T 3urz_A 142 KLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQK 194 (208)
T ss_dssp HHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHH
T ss_pred HHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHH
Confidence 33444443321 222222333334445556778888888877764 556654433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.5e-06 Score=75.02 Aligned_cols=161 Identities=10% Similarity=-0.017 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG-HC 489 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~ 489 (671)
+......+.+.|++++|...|++..+.. +.+...+..+...|.+.|++++|...+++..... |+...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455566788888999988888766543 4566778888888888899999988888876543 344333222111 12
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKD 568 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (671)
..+...+|.+.+++..+ ..| +...+..+...|...|++++|...|++..+...-..+...+..+...+...|+.++
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22233346777777765 223 46677777778888888888888888876531111224577777788888888888
Q ss_pred HHHHHHHHH
Q 042546 569 ALSLLCLMK 577 (671)
Q Consensus 569 A~~l~~~m~ 577 (671)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-05 Score=72.75 Aligned_cols=165 Identities=8% Similarity=-0.026 Sum_probs=113.5
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHHhCCChHHHHHHHHHHHhCCCCCCH
Q 042546 309 SVLGREDCIDRFWKVLDEMRSKGYEME-METCVK----------------VLGRFSERNMVKEAVDLYEFAMACKNKPSV 371 (671)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~----------------li~~~~~~g~~~~a~~l~~~m~~~g~~p~~ 371 (671)
..+.+.|++++|...|++..+. .|+ ...|.. +...|.+.|++++|+..|++..+. .
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~--- 84 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--A--- 84 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C---
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--C---
Confidence 3445556666666666665554 222 333444 888899999999999999988752 1
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 372 NCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF 451 (671)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 451 (671)
+.+...+..+..+|...|++++|...|++..+.. +.+..+|..+..
T Consensus 85 ---------------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 130 (208)
T 3urz_A 85 ---------------------------------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGN 130 (208)
T ss_dssp ---------------------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ---------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 2234567888889999999999999999998875 456788888888
Q ss_pred HHHhcCC--HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 452 RLSSAGK--KDEANEFMDHMEASGSDVGDK--MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 452 ~~~~~g~--~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
.|...|. .+.+...+.... .|+.. .+...-.++...|++++|...|++..+ +.|+......+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~l~ 197 (208)
T 3urz_A 131 YYYLTAEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHHHHH
Confidence 8876654 445566666554 34443 344445566778999999999999965 678765544443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00066 Score=70.98 Aligned_cols=368 Identities=7% Similarity=-0.009 Sum_probs=189.9
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHccCc-HHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC-ChhH
Q 042546 142 SSPDEARRFFNWVLEKESERLSSKTYNLMLRIVGVHGL-VQEFWGLVDVMKKK-GYGV-ASHVRNKMTEKFEKEG-LESD 217 (671)
Q Consensus 142 ~~~~~A~~~f~~m~~~~~~~~~~~~~n~li~~~~~~g~-~~~a~~l~~~m~~~-g~~p-~~~t~~~ll~~~~~~g-~~~~ 217 (671)
|+.+.|..+|+.... ..|++..|..-+.-..+.+. .+....+|+..... |..| +...|...+.-+.... ...+
T Consensus 28 ~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 789999999998876 23789999988888777764 35567788877653 5433 5666766665543211 0112
Q ss_pred HHHHHHHHHc---CCCCChHHHHHHHHHHHHhcCCChhHHHHHHhhcccccChHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 042546 218 LEKLKGIFAT---GSIDNSIEKVASRICKVVRSDIWGDDVERQLRDLNVTFSNDLVKFVVDKLGDEPKKALIFFRWAEES 294 (671)
Q Consensus 218 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~ 294 (671)
...+..+|.+ .+..+....+.. ...+.. . .........+....+.+..|..+++.+...
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~-Y~~fE~-------------~----~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~ 166 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKD-FENFEL-------------E----LNKITGKKIVGDTLPIFQSSFQRYQQIQPL 166 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHH-HHHHHH-------------H----HCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHH-HHHHHH-------------H----hccccHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2233333333 222211111000 000000 0 000111111111113344555555544321
Q ss_pred CCCCCCHHHHHHHHHHHHccC--C-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 042546 295 GFVKHDESSYNAMASVLGRED--C-----IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKN 367 (671)
Q Consensus 295 ~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~ 367 (671)
. ...+...|...+.---..+ - .+.+..+|++..... +-+...|...+.-+.+.|++++|.++|++....
T Consensus 167 ~-~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-- 242 (493)
T 2uy1_A 167 I-RGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-- 242 (493)
T ss_dssp H-HTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred H-hhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Confidence 0 0124557777666543321 1 345677888888753 446888888888888999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 368 KPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKS 447 (671)
Q Consensus 368 ~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 447 (671)
|....... .|+.....+ ..+.. +...+.. ...+.+. .. .+ ......|.
T Consensus 243 -P~~~~l~~---~y~~~~e~~-~~~~~-------------------l~~~~~~-~~~~~~~-----~~-~~-~~~~~lw~ 290 (493)
T 2uy1_A 243 -SDGMFLSL---YYGLVMDEE-AVYGD-------------------LKRKYSM-GEAESAE-----KV-FS-KELDLLRI 290 (493)
T ss_dssp -CCSSHHHH---HHHHHTTCT-HHHHH-------------------HHHHTC-----------------CH-HHHHHHHH
T ss_pred -CCcHHHHH---HHHhhcchh-HHHHH-------------------HHHHHHh-hccchhh-----hh-cc-cccHHHHH
Confidence 54332211 222211111 01111 1111100 0000000 00 00 01124555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 042546 448 KIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV--SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC 525 (671)
Q Consensus 448 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~ 525 (671)
..+..+.+.+..+.|..+|+.. +.. ..+...|. +.+.... .++.+.|.++|+...+..+- +...+...++...
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~ 365 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHH
Confidence 6666666666777777777777 211 12333333 2222222 23577777777777662222 2334555666666
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 526 SKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
+.|+.+.|..+|+...+ ....|...+.--...|+.+.+.++++++.
T Consensus 366 ~~~~~~~aR~l~er~~k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRLEK------TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHSCC------BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 77777777777777642 35667777766666777777777777665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.2e-05 Score=86.72 Aligned_cols=130 Identities=11% Similarity=-0.003 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.+++..+.. +.+...+..+...|
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHAL 101 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344444444444555555555555444432 2234444444444445555555555554444432 12334444444444
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK---NRAIDACKFVHNCVR 542 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 542 (671)
.+.|++++|.+.+++..+ .. ..+...+..+...|... |+.++|.+.+++..+
T Consensus 102 ~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQ-LL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 555555555555544443 11 11233444444444444 445555554444443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.1e-05 Score=74.32 Aligned_cols=231 Identities=13% Similarity=0.011 Sum_probs=143.2
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
|++++|.+++++..+.. +.. .+...+++++|...|.+. ...|...|++++|...
T Consensus 5 ~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 67788888888776421 111 011157788888887764 4567788999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG- 437 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 437 (671)
|.+..+. +-+.+... .-..+|+.+...|.+.|++++|...|++..+.
T Consensus 59 ~~~al~~---------------~~~~~~~~-----------------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 106 (307)
T 2ifu_A 59 YLQEAEA---------------HANNRSLF-----------------HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMY 106 (307)
T ss_dssp HHHHHHH---------------HHHTTCHH-----------------HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred HHHHHHH---------------HHHcCCHH-----------------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 9887631 11111100 00135777788889999999999999876542
Q ss_pred ---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042546 438 ---GFIAS--SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV-G----DKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507 (671)
Q Consensus 438 ---g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 507 (671)
| .+. ..+++.+...|.+ |++++|+..|++..+..... + ..+++.+...|.+.|++++|.+.|++..+.
T Consensus 107 ~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 107 VENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 111 3567777788877 99999988888775421111 1 356777788888888888888888877651
Q ss_pred ---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHH
Q 042546 508 ---EGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH---TTYEELIKNLLVQRGFKDALS 571 (671)
Q Consensus 508 ---~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~ 571 (671)
.+..+. ...+..+..++...|++++|...|++.. ...-.++. .....++.++ ..|+.+.+.+
T Consensus 185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 111111 2245556666677788888888888775 32111121 1233444444 4566555544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.4e-05 Score=69.05 Aligned_cols=126 Identities=15% Similarity=0.124 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG----KKDEANEFMDHMEASGSDVGDKMWVS 483 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~~~~~~~~~ 483 (671)
...+..+-..|...+++++|.+.|++..+.| +...+..|-..|.. + +.++|.+.|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3344444444444555555555555544432 33344444444444 3 4555555555544432 3334444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 042546 484 LIKGHCV----AGDLDKAADCFQKMVEKEGTS-HAGYAIDLLVNTYCS----KNRAIDACKFVHNCV 541 (671)
Q Consensus 484 li~~~~~----~g~~~~a~~~~~~m~~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 541 (671)
+-..|.. .++.++|.++|++..+ .+.. .+...+..|-..|.. .++.++|...|++..
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4444443 4445555555554433 2211 013334444444444 344444444444443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00039 Score=67.20 Aligned_cols=218 Identities=8% Similarity=-0.023 Sum_probs=163.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc-
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG--KKDEANEFMDHMEASGSDVGDKMWVSLIKGH----CVA- 491 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~- 491 (671)
.+....++|+++++.+.... +-+...|+.--..+...| +++++++.++.+.... +-+..+|+.--..+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 34444579999999998765 456677888888888888 9999999999998764 23445566544444 444
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--
Q 042546 492 --GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI--DACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG-- 565 (671)
Q Consensus 492 --g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-- 565 (671)
+++++++++++.+.+ . -+-+..+|+----.+.+.|.++ ++.+.++.+.+. -.-|...|+.-...+.+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~-~-~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 122 NDFDPYREFDILEAMLS-S-DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TCCCTHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGC
T ss_pred ccCCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccc
Confidence 789999999999987 2 2336677777666777788888 999999999875 34577788877666777676
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHH-H---HHHHHhcCCh-HHHHHHHHHhhhCC---CCCHHHHHHHHHHHHHcCCHH
Q 042546 566 ----FKDALSLLCLMKDHGFPPFVDP-F---IKYVSKSGTS-DDAIAFLKGMTSKR---FPSMSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 566 ----~~~A~~l~~~m~~~~~~p~~~t-~---~~~l~~~g~~-~~A~~~~~~m~~~~---~p~~~~~~~l~~~~~~~g~~~ 633 (671)
++++++.++++... .|+..+ + ..++.+.|+. +++..+.+++...+ +.+...+..+.++|.+.|+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 89999999998864 454433 2 3445666764 44566777766543 578899999999999999999
Q ss_pred HHHHHHHhchH
Q 042546 634 EAQDLLSKCPR 644 (671)
Q Consensus 634 ~A~~~~~~m~~ 644 (671)
+|.++++.+.+
T Consensus 276 ~A~~~~~~l~~ 286 (306)
T 3dra_A 276 ESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.3e-06 Score=91.11 Aligned_cols=171 Identities=11% Similarity=-0.052 Sum_probs=117.0
Q ss_pred CCChHHHHHHHHHHH--------HcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 042546 278 GDEPKKALIFFRWAE--------ESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~--------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 349 (671)
.|++++|++.|++.. +.. +.+...|..+...|.+.|++++|.+.|++..+.. +-+...|..+-.++.+.
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 488899999988876 321 4456778888888888888888888888887653 22567777788888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 350 NMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNK 429 (671)
Q Consensus 350 g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 429 (671)
|++++|.+.|++..+. .| .+...|..+..+|.+.|++++ .+
T Consensus 481 g~~~~A~~~~~~al~l--~P------------------------------------~~~~~~~~lg~~~~~~g~~~~-~~ 521 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FP------------------------------------GELAPKLALAATAELAGNTDE-HK 521 (681)
T ss_dssp TCHHHHHHHHHHHHHH--ST------------------------------------TCSHHHHHHHHHHHHHTCCCT-TC
T ss_pred CCHHHHHHHHHHHHHh--CC------------------------------------CChHHHHHHHHHHHHcCChHH-HH
Confidence 8888888888877642 11 122345666667777788877 77
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 042546 430 ILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG-DKMWVSLIKGHCVAGD 493 (671)
Q Consensus 430 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~ 493 (671)
.|++..+.. +.+...|..+..+|.+.|++++|.+.|++..+. .|+ ...|..+..++...+.
T Consensus 522 ~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 522 FYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 777777654 345667777777777888888888877776654 344 3455555555554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00023 Score=69.02 Aligned_cols=165 Identities=8% Similarity=-0.066 Sum_probs=115.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGG-FIASS----NMKSKIAFRLSSAGKKDEANEFMDHMEASGSD-VG----DKMWV 482 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~ 482 (671)
..+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|...|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677888999999999999887642 12221 13334666677778999999999998874222 22 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc---C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCC-HHHH
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVEK---E-GTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDLKPW-HTTY 553 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~~---~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~ 553 (671)
.+...|...|++++|...|+++.+. . +..+. ..++..+...|.+.|++++|...+++..+. .+..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888899999999999999888731 1 22222 236777888888899999999888876542 222222 4577
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHH
Q 042546 554 EELIKNLLVQR-GFKDALSLLCLMK 577 (671)
Q Consensus 554 ~~li~~~~~~g-~~~~A~~l~~~m~ 577 (671)
..+-..|.+.| ..++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 77778888888 4688888887764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.5e-06 Score=90.41 Aligned_cols=152 Identities=13% Similarity=-0.013 Sum_probs=71.2
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 419 ISVGRMGECNKILKAME--------EGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
...|++++|.+.+++.. +.. +.+...|..+...|.+.|++++|.+.|++..+.. .-+...|..+-..|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44555555555555554 211 2333445555555555555555555555554432 2234445555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (671)
.|++++|.+.|++..+ .. .-+...+..+-.+|.+.|++++ .+.|++..+. -.-+...|..+..+|.+.|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~-l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD-TF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHH-HS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHH-hC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555544 11 1123344444445555555555 5555554432 1113334444445555555555555
Q ss_pred HHHHHHH
Q 042546 571 SLLCLMK 577 (671)
Q Consensus 571 ~l~~~m~ 577 (671)
+.|++..
T Consensus 555 ~~~~~al 561 (681)
T 2pzi_A 555 RTLDEVP 561 (681)
T ss_dssp HHHHTSC
T ss_pred HHHHhhc
Confidence 5555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.30 E-value=6.5e-05 Score=73.57 Aligned_cols=208 Identities=13% Similarity=0.056 Sum_probs=125.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC-CHHHHHH
Q 042546 449 IAFRLSSAGKKDEANEFMDHMEASGS---DV--GDKMWVSLIKGHCVAGDLDKAADCFQKMVEK---EGTSH-AGYAIDL 519 (671)
Q Consensus 449 li~~~~~~g~~~~A~~~~~~m~~~g~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p-~~~~~~~ 519 (671)
....|...|++++|...|.+..+... .+ -..+|+.+...|.+.|++++|...|++..+. .|-.. -..++..
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34567778888888888877653210 11 1346777778888888888888888876541 11111 1346667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHH-HH--
Q 042546 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMKDH----GFPPFVD-PF-- 588 (671)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~p~~~-t~-- 588 (671)
+-..|.. |++++|...|++......-..+ ..++..+...|.+.|++++|++.|++..+. +..+... .+
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 7777877 8888888888876542110001 356777788888889999999888877642 1111111 12
Q ss_pred -HHHHHhcCChHHHHHHHHHhhhCCC--CCH---HHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHhhh
Q 042546 589 -IKYVSKSGTSDDAIAFLKGMTSKRF--PSM---SVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKK 660 (671)
Q Consensus 589 -~~~l~~~g~~~~A~~~~~~m~~~~~--p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~ 660 (671)
...+...|++++|...|++.. ..+ ++. .....++.++ ..|+.+.+.++ .+-+.-....+....+...+.
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~-~~~~~~~~ld~~~~~~~~~l~ 275 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV-CRSPLVTYMDNDYAKLAISLK 275 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH-TTSHHHHTSCHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH-HhCchhhhhhHHHHHHHHhCC
Confidence 222345689999999998887 433 121 2344455555 57887777773 333322233444455555554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.6e-05 Score=77.00 Aligned_cols=164 Identities=12% Similarity=0.066 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 300 DESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379 (671)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 379 (671)
+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...+++...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--------------- 179 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--------------- 179 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---------------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---------------
Confidence 34445555555556666666666666555542 11345555555555566666666555554432
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN-SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 458 (671)
..|+..... .....+.+.++.++|...+++..+.. +.+...+..+...|...|+
T Consensus 180 ------------------------~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~ 234 (287)
T 3qou_A 180 ------------------------QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGR 234 (287)
T ss_dssp ------------------------GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ------------------------hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHccc
Confidence 112222111 11122344445555555555554433 3344555555555555555
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 459 KDEANEFMDHMEASGSDV-GDKMWVSLIKGHCVAGDLDKAADCFQKM 504 (671)
Q Consensus 459 ~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m 504 (671)
+++|...|.++.+..... +...+..+...+...|+.++|...+++.
T Consensus 235 ~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 235 NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 555555555555432110 1344555555555555555555554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3.2e-05 Score=67.57 Aligned_cols=127 Identities=9% Similarity=-0.097 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|.+.+++..+.. +.+...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 35566666777777777777777766543 3456666677777777777777777777766543 234556666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSHAGYAI--DLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m 540 (671)
..|++++|.+.+++..+...- +...+ ..+...+.+.|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 777777777777666651111 22222 22333345556666666665544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.7e-05 Score=83.85 Aligned_cols=154 Identities=10% Similarity=-0.065 Sum_probs=111.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVD 357 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 357 (671)
.|+.++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.. +.+...|..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 378889999998876532 4567888999999999999999999999988763 2357888888899999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 358 LYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEG 437 (671)
Q Consensus 358 l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 437 (671)
.|++..+. .+.+...+..+..+|.+.|++++|.+.|++..+.
T Consensus 79 ~~~~al~~--------------------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 79 LLQQASDA--------------------------------------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHH--------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99887641 2335678888889999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 042546 438 GFIASSNMKSKIAFRLSSA---GKKDEANEFMDHMEASG 473 (671)
Q Consensus 438 g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g 473 (671)
. +.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 121 ~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 121 L-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred C-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 4 45677888888899998 99999999999988765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00015 Score=70.49 Aligned_cols=160 Identities=7% Similarity=-0.101 Sum_probs=101.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 042546 485 IKGHCVAGDLDKAADCFQKMVEKEGTSHAGY----AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW----HTTYEEL 556 (671)
Q Consensus 485 i~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~l 556 (671)
+..+...|++++|.+++++..+.....|+.. .+..+...|...|++++|...|+.......-.++ ..+|+.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 5566777777777777777765233333321 2334555666667777887777777652111222 2357777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh----C-CCCCCHH----HHHHHHHhcCChHHHHHHHHHhhhC-----CCC-CHHHHHH
Q 042546 557 IKNLLVQRGFKDALSLLCLMKD----H-GFPPFVD----PFIKYVSKSGTSDDAIAFLKGMTSK-----RFP-SMSVVLC 621 (671)
Q Consensus 557 i~~~~~~g~~~~A~~l~~~m~~----~-~~~p~~~----t~~~~l~~~g~~~~A~~~~~~m~~~-----~~p-~~~~~~~ 621 (671)
...|...|++++|++.+++..+ . +..+... .+...|.+.|++++|..++++..+. ..+ -...|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777778888888887777663 1 1111111 1244556788888888888776641 122 2678999
Q ss_pred HHHHHHHcCC-HHHHHHHHHhchH
Q 042546 622 LFAAFFQARR-HSEAQDLLSKCPR 644 (671)
Q Consensus 622 l~~~~~~~g~-~~~A~~~~~~m~~ 644 (671)
+..+|.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999994 6999999988653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.4e-05 Score=70.04 Aligned_cols=126 Identities=10% Similarity=-0.087 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|.+.|++..+.. +.+...|..+...|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455566777888888888887663 5677778888888888888888888888777654 3456677777777888
Q ss_pred cCCHHHHHHHHHHHHHcCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTS--------------H-AGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.|++++|.+.|++..+ ..-. | ....+..+..+|.+.|++++|.+.|+....
T Consensus 84 ~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALI-QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp TTCHHHHHHHHHHHHH-TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHH-hCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888888877766 2211 1 124555666666677777777777766654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.4e-05 Score=73.05 Aligned_cols=167 Identities=9% Similarity=-0.088 Sum_probs=102.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIAS-----SNMKSKIAFRLSSAGKKDEANEFMDHMEASGS---DVG--DKM 480 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~~ 480 (671)
+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|...+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 44556677788888888888877765431111 12233455556677788888888877764321 111 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCC-CHH
Q 042546 481 WVSLIKGHCVAGDLDKAADCFQKMVE---KEGTSH--AGYAIDLLVNTYCSKNRAIDACKFVHNCVREY---DLKP-WHT 551 (671)
Q Consensus 481 ~~~li~~~~~~g~~~~a~~~~~~m~~---~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p-~~~ 551 (671)
|+.+...|...|++++|...|++..+ ..+-.+ ...++..+...|.+.|++++|...+++..... +... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 77777778888888888888877762 111111 12466677777777888888887777665321 1111 145
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 042546 552 TYEELIKNLLVQRGFKDA-LSLLCLMK 577 (671)
Q Consensus 552 ~~~~li~~~~~~g~~~~A-~~l~~~m~ 577 (671)
+|..+...|.+.|+.++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 666667777777777777 55565543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00069 Score=65.49 Aligned_cols=219 Identities=9% Similarity=-0.009 Sum_probs=103.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhC---C
Q 042546 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGRED--CIDRFWKVLDEMRSKGYEMEMETCVKVLGRF----SER---N 350 (671)
Q Consensus 280 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~----~~~---g 350 (671)
..++|++.++.+.... +-+...||.--..+...| ++++++++++.+....- -+..+|+.--..+ ... +
T Consensus 48 ~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccC
Confidence 3345666666555422 334455555555555555 56666666666655421 1334444332222 223 4
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHH
Q 042546 351 MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG--ECN 428 (671)
Q Consensus 351 ~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~ 428 (671)
++++++++++.+.+. .+.+..+|+--.-.+.+.|.++ +++
T Consensus 125 ~~~~EL~~~~~~l~~--------------------------------------~pkny~aW~~R~~vl~~l~~~~~~~EL 166 (306)
T 3dra_A 125 DPYREFDILEAMLSS--------------------------------------DPKNHHVWSYRKWLVDTFDLHNDAKEL 166 (306)
T ss_dssp CTHHHHHHHHHHHHH--------------------------------------CTTCHHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CHHHHHHHHHHHHHh--------------------------------------CCCCHHHHHHHHHHHHHhcccChHHHH
Confidence 555555555555431 1122223333333334444444 556
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHH
Q 042546 429 KILKAMEEGGFIASSNMKSKIAFRLSSAGK------KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDK-AADCF 501 (671)
Q Consensus 429 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-a~~~~ 501 (671)
+.++++.+.. +.|...|+--...+.+.+. ++++++.++++.... +-|...|+-.-..+.+.|+... +.++.
T Consensus 167 ~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 167 SFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 6666665544 3455555554444444444 555555555555443 2344555555555555554222 33343
Q ss_pred HHHHHcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 502 QKMVEKEG--TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 502 ~~m~~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.+..+ .+ -..+...+..+.+.|.+.|+.++|.++++.+.+
T Consensus 245 ~~~~~-~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 245 LQFVD-LEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTEE-GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHh-ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 33332 11 122344455555555555555555555555543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00015 Score=70.39 Aligned_cols=93 Identities=9% Similarity=0.029 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-HH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEG-GFIAS-----SNMKSKIAFRLSSAGKKDEANEFMDHMEASG----SDVG-DK 479 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~-~~ 479 (671)
++.+...|...|++++|...|++..+. ...|+ ..+|+.+...|.+.|++++|.+.+++..+.. .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 455555555556666665555554411 00111 1344555555555555555555555443210 0000 23
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKA-ADCFQK 503 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a-~~~~~~ 503 (671)
+|..+...|.+.|+.++| ...+++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 444444445555555554 333443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-05 Score=70.63 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=91.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVV 383 (671)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~ 383 (671)
+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...++...+. .|+...+ .+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~--- 81 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAK--- 81 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHH---
Confidence 4445566777788888888887765432 225667777777788888888888888776532 2222111 11000
Q ss_pred cCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 384 SKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEAN 463 (671)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 463 (671)
+ .+...+...+|...|++..+.. +.+...+..+...+...|++++|.
T Consensus 82 -------------------------------~-~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~ 128 (176)
T 2r5s_A 82 -------------------------------L-ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEAL 128 (176)
T ss_dssp -------------------------------H-HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------------H-HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHH
Confidence 0 0011111223455555555433 234566666666666667777777
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 464 EFMDHMEASGSDV-GDKMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 464 ~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
..|+++.+....+ +...+..+...+...|+.++|...|++..
T Consensus 129 ~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 129 ELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 7666666553222 23456666666666666666666666543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.22 E-value=4.7e-05 Score=66.46 Aligned_cols=129 Identities=9% Similarity=-0.092 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 523 (671)
..|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|.+.+++..+ .. +.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-cccHHHHHHHHHH
Confidence 456677778888999999999999887754 34677888888888999999999999988877 32 3356678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 524 YCSKNRAIDACKFVHNCVREYDLKPWHTTY--EELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
|.+.|++++|...|++..... +.+...+ ..+...+...|++++|++.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888999999999998887642 2233444 333334667788888888877654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.21 E-value=6.6e-05 Score=61.59 Aligned_cols=95 Identities=19% Similarity=0.198 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+...|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 45555556666666666666666665443 2345555566666666666666666666655442 234455555555556
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~ 506 (671)
..|++++|.+.++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 66666666666655554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.20 E-value=6.9e-05 Score=68.68 Aligned_cols=128 Identities=9% Similarity=-0.009 Sum_probs=96.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042546 303 SYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382 (671)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 382 (671)
.+..+...+.+.|++++|...|++. +.|+...|..+...+.+.|++++|+..|++..+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------- 66 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR----------------- 66 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence 3455666777888888888888766 3567888888888888888888888888877642
Q ss_pred hcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHH
Q 042546 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS----------------SNMK 446 (671)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~ 446 (671)
.+.+...+..+..+|...|++++|...|++..+.. +.+ ...+
T Consensus 67 ---------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~ 124 (213)
T 1hh8_A 67 ---------------------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVL 124 (213)
T ss_dssp ---------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHH
T ss_pred ---------------------CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHH
Confidence 11233456777778888888888888888887643 122 2677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 447 SKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
..+...|.+.|++++|.+.|++..+..
T Consensus 125 ~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 125 YNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 788888888889999988888887653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.18 E-value=3e-05 Score=70.40 Aligned_cols=158 Identities=11% Similarity=0.044 Sum_probs=101.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCC
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA----SGSDV-GDKMWVSLIKGHCVAGD 493 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~g~ 493 (671)
...|++++|.++++..... ......++..+...|...|++++|...+++..+ .+..+ ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4578888888855555431 123556788888888889999999888888764 11111 23557777778888888
Q ss_pred HHHHHHHHHHHHHc---CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcC
Q 042546 494 LDKAADCFQKMVEK---EGTSH--AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH----TTYEELIKNLLVQR 564 (671)
Q Consensus 494 ~~~a~~~~~~m~~~---~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g 564 (671)
+++|.+.+++..+. .+-.| ....+..+...+...|++++|...+++......-..+. .++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888876651 12121 23456667777888888888888887765321111121 23456666777788
Q ss_pred CHHHHHHHHHHHH
Q 042546 565 GFKDALSLLCLMK 577 (671)
Q Consensus 565 ~~~~A~~l~~~m~ 577 (671)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 8888887777664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=69.53 Aligned_cols=139 Identities=15% Similarity=0.081 Sum_probs=86.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKA 497 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a 497 (671)
+...|++++|...+....... +-+...+-.+...|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 345567777777777665321 1123345566777777888888888887777653 33566777777777788888888
Q ss_pred HHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 042546 498 ADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDACKF-VHNCVREYDLKP-WHTTYEELIKNLLVQR 564 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~p-~~~~~~~li~~~~~~g 564 (671)
...|++..+ +.| +...+..+...|.+.|+.++|.+. +++..+ +.| +..+|......+...|
T Consensus 85 ~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~---l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK---LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhC
Confidence 888877766 233 355677777777777777665554 455544 233 3444554444444444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=8.7e-06 Score=70.16 Aligned_cols=135 Identities=9% Similarity=-0.037 Sum_probs=67.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 567 (671)
...|++++|.+.+..... ..|+ ...+-.+-..|.+.|++++|.+.|++..+. -+-+...|..+-..|.+.|+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 344555555555555432 2222 223344555566666666666666665542 1223445555555666666666
Q ss_pred HHHHHHHHHHhCCCCCCHHH-H---HHHHHhcCChHHHHHH-HHHhhhCCCCCHHHHHHHHHHHHHcC
Q 042546 568 DALSLLCLMKDHGFPPFVDP-F---IKYVSKSGTSDDAIAF-LKGMTSKRFPSMSVVLCLFAAFFQAR 630 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t-~---~~~l~~~g~~~~A~~~-~~~m~~~~~p~~~~~~~l~~~~~~~g 630 (671)
+|+..|++..+. .|+... + ...|.+.|+.++|.+. +++..+..|.+...|......+.+.|
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 666666655542 343221 1 2334455555544333 35555544455555555555555554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.00016 Score=59.16 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 042546 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN 522 (671)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~ 522 (671)
...|..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+ .. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hC-CccHHHHHHHHH
Confidence 4566777777778888888888888776653 33566677777777777888888887777766 22 235566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q 042546 523 TYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~ 543 (671)
.|...|++++|...|+++...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 777777777777777777653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.07 E-value=5e-05 Score=73.25 Aligned_cols=95 Identities=11% Similarity=-0.058 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 523 (671)
..+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|.+.+++..+ . -+-+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE-L-DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-S-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-h-CCCCHHHHHHHHHH
Confidence 344444445555555555555555554432 12444455555555555555555555555543 1 11233444555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042546 524 YCSKNRAIDACKFVHNCV 541 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~ 541 (671)
|...|++++|...|....
T Consensus 82 ~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 555555555555555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.06 E-value=7.1e-05 Score=62.09 Aligned_cols=103 Identities=9% Similarity=-0.041 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 042546 553 YEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628 (671)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~ 628 (671)
|...-..|.+.|++++|++.|++..+. .|+.... ..++.+.|++++|+..+++..+..+.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 334444555555666666655555542 2332211 2334455666666666666666555566667777777777
Q ss_pred cCCHHHHHHHHHhchHhhhccHHHHHHHH
Q 042546 629 ARRHSEAQDLLSKCPRYVRNHADVLNLLY 657 (671)
Q Consensus 629 ~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 657 (671)
.|++++|.+.|++..+.-++.+++..-+.
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 77777777777766555455555544443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00013 Score=60.26 Aligned_cols=115 Identities=11% Similarity=-0.053 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 45555566666666666666666665543 3345566666666666666666666666665542 223455555555666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 528 (671)
..|++++|.+.+++..+ .. +.+...+..+..++.+.|
T Consensus 92 ~~~~~~~A~~~~~~~~~-~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE-LD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHh-cC-ccchHHHHHHHHHHHHHh
Confidence 66666666666666554 21 113334444444444443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00014 Score=60.21 Aligned_cols=95 Identities=9% Similarity=-0.035 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+...-..|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45556667777777777777777776654 4566677777777777777777777777776653 334566777777777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~ 506 (671)
..|++++|.+.|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 77777777777777765
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00012 Score=69.14 Aligned_cols=131 Identities=10% Similarity=-0.100 Sum_probs=80.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHH--HHHH
Q 042546 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP---FVDPF--IKYV 592 (671)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p---~~~t~--~~~l 592 (671)
-.....+...|++++|.++|+.+.. ..|+......+-..+.+.+++++|+..|+...... .| +...+ -.++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3455566677777777777777653 23544344444456667777888877776443321 11 11111 3445
Q ss_pred HhcCChHHHHHHHHHhhhCCC-C--CHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHH
Q 042546 593 SKSGTSDDAIAFLKGMTSKRF-P--SMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVL 653 (671)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 653 (671)
...|++++|+..|++...+.. | ..........++.+.|+.++|..+|+++...... +.+.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence 677888888888877765432 3 3345666777778888888888888887765444 4433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00011 Score=61.06 Aligned_cols=97 Identities=13% Similarity=-0.006 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
...+..+...+.+.|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++..+.. ..+...+..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3456666666777777777777777766543 3355666666666666777777777776666543 2345556666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 042546 488 HCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~ 506 (671)
+.+.|++++|.+.|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666666654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00018 Score=65.15 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--C
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEG----GFI-ASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS----GSDV--G 477 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~--~ 477 (671)
.++..+...|...|++++|...+++..+. +.. ....++..+...|...|++++|.+.+++..+. +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 35677778889999999999999887651 211 23457788888999999999999999887542 2111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEK---EGTS-HAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
...+..+...+...|++++|...+++..+. .+.. .-..++..+...|...|++++|.+.+++...
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345778888899999999999999887641 1111 1123457778889999999999999887764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00014 Score=64.37 Aligned_cols=121 Identities=9% Similarity=-0.045 Sum_probs=82.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG-HCVAGDL--D 495 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~--~ 495 (671)
...|++++|...+++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34577777887777776654 4566777888888888888888888888876653 2355666666666 6677777 8
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 042546 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE 543 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (671)
+|...+++..+ .. +.+...+..+...|...|++++|...|......
T Consensus 99 ~A~~~~~~al~-~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALA-LD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 88888887776 22 224556667777777788888888888777653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00011 Score=63.08 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+-..+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +-+...|..+-.+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 45555556666666666666666666554 3455666666666666666666666666665543 223455566666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~ 506 (671)
+.|++++|.+.|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666655
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00017 Score=61.91 Aligned_cols=103 Identities=9% Similarity=0.026 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042546 336 METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVL 415 (671)
Q Consensus 336 ~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 415 (671)
...+..+-..+.+.|++++|...|+...+. .+.+...|..+-
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------------------------------------~P~~~~~~~~lg 77 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------------------------------------DFYNVDYIMGLA 77 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------------CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------CCCCHHHHHHHH
Confidence 446667777778888888888888877642 122344577777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDK 479 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 479 (671)
.+|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+. .||..
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 78888888888888888887665 445677888888888888888888888888765 35543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=7.6e-05 Score=63.95 Aligned_cols=96 Identities=9% Similarity=0.024 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNT 523 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~ 523 (671)
..+..+...+.+.|++++|...|++..... +.+...|..+..+|...|++++|.+.|++..+ .. +.+...+..+..+
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~-p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV-MD-IXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HS-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCchHHHHHHHH
Confidence 344455555666666666666666655443 23455555566666666666666666666554 11 1133445555556
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 042546 524 YCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~ 542 (671)
|...|++++|...|+...+
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00026 Score=58.79 Aligned_cols=120 Identities=6% Similarity=-0.066 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDL 519 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 519 (671)
+.+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+ .. ..+...+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ-LE-PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-HC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hC-CCchHHHHH
Confidence 3455677778888888888888888888887653 23667777788888888888888888888776 22 235667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 520 LVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR 564 (671)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (671)
+..+|.+.|++++|.+.|++..... ..+...+..+...+.+.|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhc
Confidence 7778888888888888888776531 112344555555554443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00031 Score=57.94 Aligned_cols=119 Identities=10% Similarity=0.001 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+ .. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC-ID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh-cC-ccCHHHHHHHH
Confidence 45567777788888888888888888887653 34667788888888888888888888888876 32 23466777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 042546 522 NTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG 565 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 565 (671)
..|.+.|++++|...|++.... .+.+...+..+...+.+.|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 8888888888888888887764 12345566666666666554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0035 Score=61.32 Aligned_cols=225 Identities=10% Similarity=0.033 Sum_probs=156.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG-KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
+.+-....+.+..++|+++++.+.... +-+..+|+.--..+...| .+++++++++.+.... +.+..+|+.--..+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333333445566678999999998775 456677888777777788 5999999999999875 3466778877666666
Q ss_pred c-C-CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042546 491 A-G-DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI--------DACKFVHNCVREYDLKPWHTTYEELIKNL 560 (671)
Q Consensus 491 ~-g-~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (671)
. + +.++++++++.+.+ .. .-|...|+--.-.+.+.|..+ ++.+.++++.+. -.-|...|+..-..+
T Consensus 136 l~~~~~~~EL~~~~k~L~-~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL 211 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLL-PD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLR 211 (349)
T ss_dssp HCCSCCHHHHHHHHHHTS-SC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 5 6 88999999999976 22 235666655444444445555 899999998875 344778888887777
Q ss_pred HhcCC-------HHHHHHHHHHHHhCCCCCCHHH---HHHH-HHhcCCh--------------------HHHHHHHHHhh
Q 042546 561 LVQRG-------FKDALSLLCLMKDHGFPPFVDP---FIKY-VSKSGTS--------------------DDAIAFLKGMT 609 (671)
Q Consensus 561 ~~~g~-------~~~A~~l~~~m~~~~~~p~~~t---~~~~-l~~~g~~--------------------~~A~~~~~~m~ 609 (671)
.+.++ ++++++.++++... .|+..+ +..+ +.+.|+- .+...+...+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHH
Confidence 77776 78899999888764 455433 2333 3444442 33344444444
Q ss_pred hCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 610 SKR------FPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 610 ~~~------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
... .++......|++.|...|+.++|.++++.+.+
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 332 47888899999999999999999999999864
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.6e-05 Score=67.63 Aligned_cols=112 Identities=10% Similarity=0.056 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-H---HHH-HHhcCCh--HH
Q 042546 528 NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP-F---IKY-VSKSGTS--DD 600 (671)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t-~---~~~-l~~~g~~--~~ 600 (671)
|++++|...+...... .+.+...|..+...|...|++++|++.+++..+. .|+... + ... +...|++ ++
T Consensus 24 ~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ---CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred cCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4444444444444332 1123334444444444444444444444444432 121111 1 122 2234444 55
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 601 AIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 601 A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
|...+++.....+.+...|..+..+|.+.|++++|...+++..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 5555555544444444455555555555555555555555543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0003 Score=60.13 Aligned_cols=96 Identities=13% Similarity=-0.003 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++..... +.+...|..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 456677888999999999999999998765 5678899999999999999999999999998764 34567888899999
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~ 506 (671)
...|++++|.+.|+...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999999877
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0006 Score=64.41 Aligned_cols=195 Identities=9% Similarity=-0.030 Sum_probs=137.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 042546 420 SVGRMGECNKILKAMEEGGFIASSNMKSKI-------AFRLSSAGKKDEANEFMDHMEASGSDVG--------------- 477 (671)
Q Consensus 420 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------- 477 (671)
..++...|.+.|.+..+.. +-....|+.+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 6899999999999999875 4566788877 4555555555555555544433 1221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-
Q 042546 478 -------DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW- 549 (671)
Q Consensus 478 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~- 549 (671)
...+-.....+...|++++|.++|+.+.. ..|+......+...+.+.+++++|...|+..... . .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-Cccc
Confidence 22344566778899999999999998865 2355545555666888999999999999855431 1 121
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHH--HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHH
Q 042546 550 -HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV---DPF--IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLF 623 (671)
Q Consensus 550 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~t~--~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~ 623 (671)
...+..+-.++.+.|++++|++.|++.......|.. ..+ ..++.+.|+.++|...|+++....+. ...+..|.
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 236677788899999999999999999854433652 222 45557899999999999999986654 55555553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0058 Score=59.71 Aligned_cols=174 Identities=8% Similarity=-0.029 Sum_probs=92.8
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHH
Q 042546 312 GREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERN-MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMR 390 (671)
Q Consensus 312 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 390 (671)
.+.+..++|+++++.+...+- -+..+|+.--..+...| .+++++++++.+... .|.
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPK-------------------- 121 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLK-------------------- 121 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCC--------------------
T ss_pred HhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCC--------------------
Confidence 334455677777777776531 14556666656666666 477777777777643 121
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------
Q 042546 391 LFSKVVRVFRENGNVLTDAMLNSVLKALISV-G-RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKD-------- 460 (671)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-------- 460 (671)
+..+|+.--..+.+. + +.++++++++.+.+.. +.|..+|+--.-.+.+.|..+
T Consensus 122 ----------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~ 184 (349)
T 3q7a_A 122 ----------------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWG 184 (349)
T ss_dssp ----------------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHH
Confidence 112233333333333 3 5566666776666544 455666665444444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcC
Q 042546 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD-------LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKN 528 (671)
Q Consensus 461 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g 528 (671)
++++.++++.+.. .-|...|+-....+.+.+. ++++++.+++... . -.-|...|+-+-..+.+.|
T Consensus 185 eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~-~-~P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 185 SELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH-L-IPHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH-h-CCCCHHHHHHHHHHHHhcC
Confidence 6666666666554 2355566665555555554 4566666655554 1 1224444444444444433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00034 Score=61.01 Aligned_cols=96 Identities=18% Similarity=0.129 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
..+..+...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. ..+...|..+...|
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 456777778888888888888888887764 4467788888888888888888888888887764 33567788888888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~ 506 (671)
...|++++|.+.|++..+
T Consensus 90 ~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 888888888888888876
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00026 Score=68.18 Aligned_cols=189 Identities=8% Similarity=-0.083 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
...+..+...+.+.|++++|...|++..+.. +.+...|..+...|.+.|++++|.+.+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4457778888999999999999999998764 4478889999999999999999999999998764 3467788899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSHAG-YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF 566 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (671)
|...|++++|...|++..+ .. |+. ..+...+....+ ...+... ..... .....+......+ ..+ ..|+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~-l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~-~~~~~~~~i~~~l-~~l-~~~~~ 151 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS-LA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEE-RRIHQESELHSYL-TRL-IAAER 151 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHH-TCCCCCCHHHHHH-HHH-HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-hC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHH-HHHhhhHHHHHHH-HHH-HHHHH
Confidence 9999999999999998876 21 111 011111111111 1111111 12222 1334444443333 333 36888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHH----HHHhc-CChHHHHHHHHHhhh
Q 042546 567 KDALSLLCLMKDHGFPPFVDPFIK----YVSKS-GTSDDAIAFLKGMTS 610 (671)
Q Consensus 567 ~~A~~l~~~m~~~~~~p~~~t~~~----~l~~~-g~~~~A~~~~~~m~~ 610 (671)
++|++.+++..+ ..|+...+.. .+.+. +.+++|.++|..+.+
T Consensus 152 ~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999888775 4677655422 23333 678889999987765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00021 Score=59.08 Aligned_cols=105 Identities=13% Similarity=0.027 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 042546 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFF 627 (671)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~ 627 (671)
.|..+-..+.+.|++++|++.|++..+. .|+.... ...+.+.|++++|+..+++..+..+.+...|..+..+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444445555666666666666655543 2332211 333446666666666666666655556777777777777
Q ss_pred HcCCHHHHHHHHHhchHhh------hccHHHHHHHHh
Q 042546 628 QARRHSEAQDLLSKCPRYV------RNHADVLNLLYS 658 (671)
Q Consensus 628 ~~g~~~~A~~~~~~m~~~~------~~~~~~~~l~~~ 658 (671)
..|++++|.+.+++..... ...+.+...+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 8888888887777766544 444444444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00037 Score=69.04 Aligned_cols=128 Identities=14% Similarity=0.002 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIAS--------------SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (671)
.+..+-..|.+.|++++|...|++..+..-... ...|..+..+|.+.|++++|+..+++..+.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 466677778888888888888888776531111 3666667777777777777777777766553 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHH
Q 042546 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA-CKFVHNC 540 (671)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m 540 (671)
.+...|..+..+|...|++++|.+.|++..+ .. +-+...+..+..++.+.|+.++| ...|..|
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQ-LY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666667777777777777776665 21 12344555666666666666665 3344444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00052 Score=56.60 Aligned_cols=95 Identities=9% Similarity=-0.059 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 35555666677777777777777766554 3456667777777777777777777777766653 234556666667777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~ 506 (671)
..|++++|.+.|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777776655
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00024 Score=57.47 Aligned_cols=103 Identities=11% Similarity=-0.052 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-H---HH
Q 042546 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-P---FI 589 (671)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t---~~ 589 (671)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|.+.+++..+. .|+.. . +.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 344555555666666666666666666543 1224455555555566666666666666655542 22211 1 12
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHH
Q 042546 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL 620 (671)
Q Consensus 590 ~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~ 620 (671)
..+...|++++|...++...+..+.+...+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3334455555555555555444433433333
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00094 Score=53.75 Aligned_cols=95 Identities=11% Similarity=0.001 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|...+++..+.. +.+...+..+...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34555555666666666666666665543 2345555666666666666666666666655442 223455555555566
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~ 506 (671)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 66666666666655544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00053 Score=58.18 Aligned_cols=111 Identities=12% Similarity=-0.060 Sum_probs=66.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHH
Q 042546 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV----DPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLC 621 (671)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~----~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~ 621 (671)
+...+..+...+...|++++|++.|++..+. .|+. ..+ ...+...|++++|...++......+.+...|..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3445555555555666666666666655542 3432 111 233445666666666666666655556667777
Q ss_pred HHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHhhhc
Q 042546 622 LFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKS 661 (671)
Q Consensus 622 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~ 661 (671)
+..+|.+.|++++|.+.+++.....+..+.+...+..+.+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 7777777777777777777766655566666666665543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00045 Score=58.51 Aligned_cols=95 Identities=16% Similarity=0.046 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++..... +.+...|..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34555667778888888888888877654 4567777788888888888888888888877664 335566777777888
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~ 506 (671)
..|++++|.+.|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888887765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00032 Score=56.05 Aligned_cols=95 Identities=9% Similarity=-0.045 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV--GDKMWVSLIKG 487 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~ 487 (671)
.+..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|.+.|++..+.. .. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555566666666666666655443 2344555555555666666666666666555442 12 34455555555
Q ss_pred HHhc-CCHHHHHHHHHHHHH
Q 042546 488 HCVA-GDLDKAADCFQKMVE 506 (671)
Q Consensus 488 ~~~~-g~~~~a~~~~~~m~~ 506 (671)
+.+. |++++|.+.++...+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 5555 555555555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00058 Score=67.64 Aligned_cols=132 Identities=12% Similarity=-0.068 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 042546 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG--------------DKMWVSLIKGHCVAGDLDKAADCFQKMVEK 507 (671)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 507 (671)
+...|..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|.+.+++..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 456788888999999999999999999887642221 47788888888888899999888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 042546 508 EGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDA-LSLLCLMK 577 (671)
Q Consensus 508 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~l~~~m~ 577 (671)
.. +.+...|..+..+|...|++++|...|++..+. .+-+...+..+...+.+.|+.++| .++++.|.
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 235677788888888888888888888888763 223456777777788888888877 44666664
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00025 Score=58.65 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS--DVG----DKMWVS 483 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~ 483 (671)
.+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+++..+... .++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 35556666667777777777777766543 34556666666666677777777777666654321 111 445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 042546 484 LIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 484 li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
+...+.+.|++++|.+.|++..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 55666666666666666666555
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00022 Score=60.44 Aligned_cols=87 Identities=9% Similarity=-0.046 Sum_probs=44.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 042546 556 LIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARR 631 (671)
Q Consensus 556 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~ 631 (671)
+...+.+.|++++|++.|++.... .|+...+ ..++.+.|++++|...|+......+.+...|..+..+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 334444555555555555554432 2322211 2233455555555555555555444455555566666666666
Q ss_pred HHHHHHHHHhchH
Q 042546 632 HSEAQDLLSKCPR 644 (671)
Q Consensus 632 ~~~A~~~~~~m~~ 644 (671)
+++|.+.+++...
T Consensus 102 ~~~A~~~~~~al~ 114 (142)
T 2xcb_A 102 LDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0007 Score=56.64 Aligned_cols=97 Identities=10% Similarity=-0.065 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
...+..+...+.+.|++++|...|+...+.. +.+...|..+...|...|++++|...+++..+.. +.+...|..+...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3445555556666666666666666655443 2345555555666666666666666666555443 2234455555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 042546 488 HCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~ 506 (671)
|...|++++|...|++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555666666555555543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00073 Score=55.93 Aligned_cols=95 Identities=13% Similarity=0.036 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS--DVG----DKMWVSL 484 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~l 484 (671)
+..+-..+.+.|++++|+..|++..+.. +.+...|+.+..+|.+.|++++|++.+++..+... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 5556666777777777777777766554 34566677777777777777777777776654211 111 1244455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 042546 485 IKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 485 i~~~~~~g~~~~a~~~~~~m~~ 506 (671)
-..+...|++++|.+.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5555566666666666665544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00085 Score=58.38 Aligned_cols=105 Identities=9% Similarity=-0.092 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 442 SSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 442 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
+...|..+...|.+.|++++|.+.|++..+.. .-+...|..+...|.+.|++++|...|++..+ .. .-+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV-VD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC-CCCHHHHHHHH
Confidence 45567778888888999999999999887764 33677788888888899999999999988877 22 22467788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q 042546 522 NTYCSKNRAIDACKFVHNCVREYDLKPW 549 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 549 (671)
.+|.+.|++++|...|++..+...-.++
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 8888889999999888888764333333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.016 Score=59.43 Aligned_cols=96 Identities=5% Similarity=-0.035 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CC-C--H
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEG--GF--IA-SSNMKSKIAFRLSSAGKKDEANEFMDHMEAS--GS-DV-G--D 478 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-~~-~--~ 478 (671)
++..+...|...|++++|..++++.... +. .+ ...+|..++..|...|++++|..++++.... .+ .| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 4555666666666666666666655432 11 11 1235555566666666666666666554321 11 11 1 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 479 KMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 479 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
..+..+...+...+++++|...|.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 234444445555566666665555444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00067 Score=56.76 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 042546 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAA 625 (671)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~ 625 (671)
...|..+...+...|++++|++.|++..+. .|+.... ...+...|++++|...++......+.+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 334444444444455555555555444432 2222111 2233345555555555555555444455566666666
Q ss_pred HHHcCCHHHHHHHHHhchH
Q 042546 626 FFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 626 ~~~~g~~~~A~~~~~~m~~ 644 (671)
|.+.|++++|.+.+++...
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 6666666666666665443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00011 Score=66.52 Aligned_cols=148 Identities=10% Similarity=-0.138 Sum_probs=73.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC--------------HHHHH
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD-VG--------------DKMWV 482 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~--------------~~~~~ 482 (671)
....|+++++.+.++.-.... ......+..+...+.+.|++++|...|++..+.... |+ ...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 344455555555554222110 122345556666677777777777777777654211 10 14555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV 562 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (671)
.+..+|.+.|++++|...+++..+ . -+.+...+..+..+|...|++++|.+.|+..... .+-+...+..+...+..
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~-~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLK-I-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-H-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH-h-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHH
Confidence 566666666666666666666655 2 1224455555666666666666666666666542 11233444445444444
Q ss_pred cCCHHHHH
Q 042546 563 QRGFKDAL 570 (671)
Q Consensus 563 ~g~~~~A~ 570 (671)
.++.+++.
T Consensus 169 ~~~~~~~~ 176 (198)
T 2fbn_A 169 LKEARKKD 176 (198)
T ss_dssp HHHHHC--
T ss_pred HHHHHHHH
Confidence 44444444
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0013 Score=67.71 Aligned_cols=161 Identities=17% Similarity=0.111 Sum_probs=76.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH
Q 042546 416 KALISVGRMGECNKILKAMEEGGFIAS----------------SNMKSKIAFRLSSAGKKDEANEFMDHMEASG-SDVGD 478 (671)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~ 478 (671)
..+.+.|++++|.+.|....+..-... ...+..+...|.+.|++++|.+.+..+...- ..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 455677788888888777776432111 0134556666666666666666666554311 01111
Q ss_pred H----HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---C
Q 042546 479 K----MWVSLIKGHCVAGDLDKAADCFQKMVEK---EGTSHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDL---K 547 (671)
Q Consensus 479 ~----~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~ 547 (671)
. +.+.+-..+...|+.++|.+++...... .+..+. ..++..+...|...|++++|..++++......- .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 1111222223345555555555554320 111111 234444555555555555555555554432111 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 548 PW-HTTYEELIKNLLVQRGFKDALSLLCLM 576 (671)
Q Consensus 548 p~-~~~~~~li~~~~~~g~~~~A~~l~~~m 576 (671)
|. ...|..++..|...|++++|..++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 11 124444455555555555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00063 Score=54.25 Aligned_cols=97 Identities=10% Similarity=0.057 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHH
Q 042546 443 SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH--AGYAIDLL 520 (671)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p--~~~~~~~l 520 (671)
...|..+...+.+.|++++|...|++..+.. ..+...|..+...+...|++++|.+.+++..+ .. .. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVIN-VI-EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hC-cccchHHHHHHH
Confidence 3445556666667777777777777666543 23455666666666667777777777766665 21 11 35556666
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHH
Q 042546 521 VNTYCSK-NRAIDACKFVHNCVR 542 (671)
Q Consensus 521 i~~~~~~-g~~~~A~~~~~~m~~ 542 (671)
..+|.+. |++++|.+.+.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhh
Confidence 6666666 666666666666654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00046 Score=56.95 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCC----HHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGT--SHA----GYAI 517 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~--~p~----~~~~ 517 (671)
..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+ ... .++ ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE-VGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hccccchhHHHHHHHH
Confidence 456667777778888888888888877653 34566777777777888888888888877765 211 122 5566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 518 DLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEEL 556 (671)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 556 (671)
..+..+|.+.|++++|.+.|+..... .|+...+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE---HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh---CCCHHHHHHH
Confidence 66777777777777777777777653 3454444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00051 Score=59.16 Aligned_cols=62 Identities=11% Similarity=-0.106 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 516 AIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
++..+...|...|++++|.+.+++......-..+ ...+..+...|...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3444455555556666666555554321100001 2244455555666666666666666544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0019 Score=53.34 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCC----HHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKE-GTSHA----GYAID 518 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-g~~p~----~~~~~ 518 (671)
..+..+-..+.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|.+.+++..+.. ...++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566677777888888888887776653 2356667777777777788888877777765410 01111 12455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.+-.+|...|++++|.+.|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555666666777777777766554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.003 Score=53.34 Aligned_cols=97 Identities=15% Similarity=0.019 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 042546 407 TDAMLNSVLKALISVGRMGECNKILKAMEEGGFIAS----SNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWV 482 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 482 (671)
+...+..+...+...|++++|...|++..+.. |+ ...|..+...|.+.|++++|.+.+++..+.. +.+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 44556666677777777777777777776543 44 4566666666777777777777777666542 22455566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+...+...|++++|.+.|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666667777777777766655
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.056 Score=52.47 Aligned_cols=191 Identities=7% Similarity=-0.069 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 042546 424 MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG--KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD-LDKAADC 500 (671)
Q Consensus 424 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~ 500 (671)
+++++.+++.+.... +.+..+|+.-.-.+.+.| .+++++.+++.+.+.. +.|...|+--.-.+.+.|. .+++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567777777777654 557777777666666767 3788888888887765 4466777776666667776 5788888
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 042546 501 FQKMVEKEGTSHAGYAIDLLVNTYCSK--------------NRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQ--- 563 (671)
Q Consensus 501 ~~~m~~~~g~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--- 563 (671)
++.+.+ .. .-|...|+-....+.+. +.++++.+.+...... -+-|...|+-+-..+.+.
T Consensus 168 ~~~~I~-~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 168 TDSLIT-RN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHH-HC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHH-HC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCc
Confidence 888776 33 23555555544443333 3466777777776653 233555665444334333
Q ss_pred --------CCHHHHHHHHHHHHhCCCCCCHHH-H------HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHH
Q 042546 564 --------RGFKDALSLLCLMKDHGFPPFVDP-F------IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCL 622 (671)
Q Consensus 564 --------g~~~~A~~l~~~m~~~~~~p~~~t-~------~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l 622 (671)
+.++++++.++++.+ ..||..- + ...+...|..+++...+.++++.+|....-|.-+
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 335566666666654 2444311 1 0111123445555555555555444444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00084 Score=54.96 Aligned_cols=94 Identities=9% Similarity=0.039 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
+..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..|++..+.. +-+...+..+...+.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3445556677788888888888777654 3466777777777777888888888887776653 2245667777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 042546 491 AGDLDKAADCFQKMVE 506 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~ 506 (671)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777777654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0008 Score=57.86 Aligned_cols=133 Identities=14% Similarity=0.040 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGF-IAS----SNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG----DK 479 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~ 479 (671)
++..+...|...|++++|...+++..+..- .++ ..++..+...|...|++++|.+.+++..+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 477788889999999999999988765311 112 24778888999999999999999998764211 112 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVEK---EGTS-HAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
.+..+...+...|++++|.+.+++..+. .+.. ....++..+...|...|+.++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777888899999999999999987651 1111 1234577788889999999999999988765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0016 Score=58.70 Aligned_cols=128 Identities=9% Similarity=-0.085 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIAS----------------SNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
.+..+...+.+.|++++|...|++..+..- .+ ...|..+..+|.+.|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 366677788999999999999999987431 12 2788889999999999999999999998764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 042546 474 SDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDAC-KFVHNCV 541 (671)
Q Consensus 474 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~ 541 (671)
+.+...+..+..+|...|++++|.+.|++..+ .. +-+...+..+..++...++.+++. ..|..+.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAAS-LN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44678899999999999999999999999987 22 225566777777777777776666 4444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0014 Score=53.97 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=24.6
Q ss_pred hcCChHHHHHHHHHhhhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhchHh
Q 042546 594 KSGTSDDAIAFLKGMTSKRFPS---MSVVLCLFAAFFQARRHSEAQDLLSKCPRY 645 (671)
Q Consensus 594 ~~g~~~~A~~~~~~m~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 645 (671)
..|++++|...++......+.+ ...+..+..+|.+.|++++|.+.+++....
T Consensus 51 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 51 ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444444444444444433222 344444555555555555555555554443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00024 Score=57.87 Aligned_cols=85 Identities=8% Similarity=0.031 Sum_probs=51.0
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 421 VGRMGECNKILKAMEEGG--FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
.|++++|...|++..+.+ -+.+...|..+...|.+.|++++|.+.|++..+.. +-+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 466667777777766543 12234556666666777777777777777766553 224555666666667777777777
Q ss_pred HHHHHHHH
Q 042546 499 DCFQKMVE 506 (671)
Q Consensus 499 ~~~~~m~~ 506 (671)
+.+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766655
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00071 Score=70.57 Aligned_cols=122 Identities=7% Similarity=-0.104 Sum_probs=94.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (671)
...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 344577899999999999998764 4568899999999999999999999999999874 34678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 495 DKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVH 538 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (671)
++|.+.|++..+...-.++....-..+..+.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999998733333343333333334888899999999988
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00066 Score=55.60 Aligned_cols=87 Identities=13% Similarity=-0.028 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 042546 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR 630 (671)
Q Consensus 555 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g 630 (671)
.+...+.+.|++++|+..+++..+. .|+.... ..++...|++++|+..|++.....+.+...|..+..+|.+.|
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3444566667777777777666653 3433221 333456677777777777777666666777777777777777
Q ss_pred CHHHHHHHHHhch
Q 042546 631 RHSEAQDLLSKCP 643 (671)
Q Consensus 631 ~~~~A~~~~~~m~ 643 (671)
++++|.+.+++..
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777777777654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.082 Score=51.31 Aligned_cols=184 Identities=8% Similarity=-0.069 Sum_probs=113.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 042546 280 EPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDC----------IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER 349 (671)
Q Consensus 280 ~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 349 (671)
..++|++.++.+.... +.+..+||.--..+...+. +++++.+++.+.... +-+..+|+.--..+.+.
T Consensus 45 ~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 45 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp CSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhcc
Confidence 4457899999988532 4556677765444433333 577888888887763 23778888777777777
Q ss_pred C--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHH
Q 042546 350 N--MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGR-MGE 426 (671)
Q Consensus 350 g--~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~ 426 (671)
+ .+++++++++.+.+. .+.|...|+----.+...|. +++
T Consensus 122 ~~~~~~~EL~~~~k~l~~--------------------------------------dprNy~AW~~R~~vl~~l~~~~~e 163 (331)
T 3dss_A 122 PEPNWARELELCARFLEA--------------------------------------DERNFHCWDYRRFVAAQAAVAPAE 163 (331)
T ss_dssp SSCCHHHHHHHHHHHHHH--------------------------------------CTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred CcccHHHHHHHHHHHHHh--------------------------------------CCCCHHHHHHHHHHHHHhCcCHHH
Confidence 7 478888888888753 12222334444444455565 477
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-
Q 042546 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSA--------------GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA- 491 (671)
Q Consensus 427 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~- 491 (671)
+++.++.+.+.. +.|...|+-....+.+. +.++++++.+....... +-|...|+-+-..+.+.
T Consensus 164 el~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~ 241 (331)
T 3dss_A 164 ELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGS 241 (331)
T ss_dssp HHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 888888887765 46777777665555544 34677777777776553 33556666544444433
Q ss_pred ----------CCHHHHHHHHHHHHH
Q 042546 492 ----------GDLDKAADCFQKMVE 506 (671)
Q Consensus 492 ----------g~~~~a~~~~~~m~~ 506 (671)
+.++++.+.++++.+
T Consensus 242 ~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 242 GRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHh
Confidence 234555555555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0087 Score=49.05 Aligned_cols=90 Identities=10% Similarity=0.006 Sum_probs=56.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGFIASS---NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVG----DKMWVSLIK 486 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~ 486 (671)
+...+.+.|++++|...|+...+.. +.+. ..+..+...|.+.|++++|...|++..+.. |+ ...+..+..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 4455666777777777777766543 1222 355666666777777777777777766543 22 445555666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+...|++++|...|+.+.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66667777777777766665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00037 Score=56.67 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 456 AGKKDEANEFMDHMEASGS--DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533 (671)
Q Consensus 456 ~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 533 (671)
.|++++|+..|++..+.+. +.+...|..+...|...|++++|.+.|++..+ .. +-+...+..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK-QF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4667777777777765431 12334566666677777777777777777765 22 22355566666677777777777
Q ss_pred HHHHHHHHHh
Q 042546 534 CKFVHNCVRE 543 (671)
Q Consensus 534 ~~~~~~m~~~ 543 (671)
...|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777766654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0014 Score=68.44 Aligned_cols=120 Identities=9% Similarity=-0.088 Sum_probs=92.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 042546 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529 (671)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 529 (671)
...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|.+.+++..+ .. +-+...+..+..+|.+.|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCC
Confidence 345667899999999999998763 34578899999999999999999999999988 32 3356788889999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 042546 530 AIDACKFVHNCVREYDLKPWHTTYEELIKN--LLVQRGFKDALSLLC 574 (671)
Q Consensus 530 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~ 574 (671)
+++|.+.|++..+...-.+. .+..+..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999875333333 44444444 788899999999988
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0032 Score=65.21 Aligned_cols=98 Identities=11% Similarity=-0.083 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 042546 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-------------GYAIDLLVNTYCSKNRAIDACKFVHNCVREY 544 (671)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (671)
...|..+-..|.+.|++++|...|++..+...-.++ ...|..+..+|.+.|++++|...|++....
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 456777777788888888888888887762111111 344444555555555555555555555432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 545 DLKPWHTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 545 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
-..+...|..+-.+|...|++++|+..|++..
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 11233444444444445555555555554444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0034 Score=54.31 Aligned_cols=58 Identities=14% Similarity=0.002 Sum_probs=37.4
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhc
Q 042546 591 YVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRN 648 (671)
Q Consensus 591 ~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 648 (671)
++.+.|++++|+..++......+.+...|..+..+|...|++++|...|++.....+.
T Consensus 72 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 72 CYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 3445666666666666666655556666777777777777777777777665544333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0055 Score=52.95 Aligned_cols=96 Identities=14% Similarity=0.083 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEG-------GF----------IASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
.+...-..+.+.|++++|...|.+..+. +- +.+...|..+..+|.+.|++++|+..+++..+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4666777888999999999999887753 00 122345666667777777777777777776655
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 473 GSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 473 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
. +.+...|..+..+|...|++++|...|++..+
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3 33456666677777777777777777776655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0052 Score=61.53 Aligned_cols=95 Identities=11% Similarity=-0.074 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGG---------------FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSD 475 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 475 (671)
+..+...|.+.|++++|.+.|++..+.- -+.+...|..+..+|.+.|++++|++.+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 6667778888999999999998877510 01122344444444444444444444444444332 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 476 VGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+...|..+..+|...|++++|.+.|++..+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1233444444444444444444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0045 Score=64.15 Aligned_cols=132 Identities=8% Similarity=-0.062 Sum_probs=88.6
Q ss_pred HHHccCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042546 310 VLGREDCIDRFWKVLDEMRSK---GYEME----METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382 (671)
Q Consensus 310 ~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 382 (671)
.+...|++++|+.++++..+. -+-|+ ..+++.|...|...|++++|..++++.++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------------- 380 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------------- 380 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 356789999999999887653 12222 568899999999999999999999987631
Q ss_pred hcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHh
Q 042546 383 VSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEE-----GGF-IAS-SNMKSKIAFRLSS 455 (671)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~~~-~~~~~~li~~~~~ 455 (671)
.....-...+....+++.|...|...|++++|..++++..+ .|- .|+ ..+.+.+-.++..
T Consensus 381 -------------~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 447 (490)
T 3n71_A 381 -------------YMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME 447 (490)
T ss_dssp -------------HHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 11110011111224678888889999999999988887653 121 111 2344555566667
Q ss_pred cCCHHHHHHHHHHHHH
Q 042546 456 AGKKDEANEFMDHMEA 471 (671)
Q Consensus 456 ~g~~~~A~~~~~~m~~ 471 (671)
.+.+++|+.++..+++
T Consensus 448 ~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 448 LRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0074 Score=62.47 Aligned_cols=119 Identities=9% Similarity=-0.027 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIAS---------------SNMKSKIAFRLSSAGKKDEANEFMDHMEASGS 474 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 474 (671)
.+..+-..|.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..+++..+..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 36667777888888888888888877642 111 3455555555555566666655555555442
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 042546 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSH-AGYAIDLLVNTYCSKNRAIDA 533 (671)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li~~~~~~g~~~~A 533 (671)
+.+...|..+..+|...|++++|...|++..+ +.| +...+..+..++.+.++.++|
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22344555555555555555555555555544 122 222344444444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0026 Score=65.99 Aligned_cols=129 Identities=13% Similarity=0.082 Sum_probs=83.0
Q ss_pred HHHhCCChHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 042546 345 RFSERNMVKEAVDLYEFAMAC--K-NKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421 (671)
Q Consensus 345 ~~~~~g~~~~a~~l~~~m~~~--g-~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (671)
.+...|++++|+.++++.++. . +.|+ .+....+++.|...|...
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~---------------------------------Hp~~a~~~~nLa~~y~~~ 364 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADT---------------------------------NLYVLRLLSIASEVLSYL 364 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTT---------------------------------SHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCC---------------------------------CHHHHHHHHHHHHHHHHh
Confidence 455789999999999887631 0 0010 011124688899999999
Q ss_pred CCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHH
Q 042546 422 GRMGECNKILKAMEEG-----G-FIA-SSNMKSKIAFRLSSAGKKDEANEFMDHMEA-----SGS-DVGD-KMWVSLIKG 487 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~-----g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~~~~-~~~~~li~~ 487 (671)
|++++|..++++..+. | -.| ...+++.|...|...|++++|+.++++..+ .|. .|++ .+.+.+-.+
T Consensus 365 g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~ 444 (490)
T 3n71_A 365 QAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQT 444 (490)
T ss_dssp TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 9999999998887642 2 112 235678888888889999988888887643 221 1111 223444455
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 042546 488 HCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~ 506 (671)
+...+.+++|+.++.++++
T Consensus 445 ~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 445 EMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.012 Score=58.79 Aligned_cols=96 Identities=9% Similarity=-0.081 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEASG--------------S-DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEG 509 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g 509 (671)
.|..+...+.+.|++++|.+.|++..+.- . ..+..+|..+..+|.+.|++++|.+.+++..+ ..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~ 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-ID 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-hC
Confidence 46667788999999999999999887510 0 11234455555555555555555555555544 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 510 TSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+-+...+..+..+|...|++++|.+.|++..+
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 12344455555555555555555555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0047 Score=49.69 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
+|...|++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...|..+...|...|+.++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555443 3455566666666666666666666666666543 2345556666666666666666666666655
Q ss_pred H
Q 042546 506 E 506 (671)
Q Consensus 506 ~ 506 (671)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0011 Score=52.79 Aligned_cols=90 Identities=13% Similarity=-0.032 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCC------HHHHHH
Q 042546 552 TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPS------MSVVLC 621 (671)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~------~~~~~~ 621 (671)
.|..+...+...|++++|++.|++..+. .|+.... ...+.+.|++++|+..+++.....+.+ ...+..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3334444444444455554444444432 2222111 223334455555555555554443333 444555
Q ss_pred HHHHHHHcCCHHHHHHHHHhch
Q 042546 622 LFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 622 l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
+..++...|+.++|.+.+++++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHhHhhhHhHHHHhH
Confidence 5666666666666665555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.021 Score=48.43 Aligned_cols=94 Identities=20% Similarity=0.101 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIAS--------S-----NMKSKIAFRLSSAGKKDEANEFMDHMEAS----- 472 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 472 (671)
+...-..+.+.|++++|...|++..+.. |+ . ..|+.+-.++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4556667788899999999998877643 32 2 26777777777777777777777776653
Q ss_pred CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 473 GSDVG-DKMW----VSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 473 g~~~~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
.+.|+ ...| ...-.++...|++++|++.|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 11233 2345 5555566666666666666665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0015 Score=52.10 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
.+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45555566666667777776666666543 335556666666666666666666666666654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.022 Score=43.02 Aligned_cols=77 Identities=13% Similarity=0.029 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
.+..+...+.+.|++++|...|++..+.. +.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45556666777777777777777766543 3455666677777777777777777777766543 22344444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.075 Score=44.25 Aligned_cols=49 Identities=10% Similarity=-0.065 Sum_probs=20.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 042546 527 KNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLV----QRGFKDALSLLCLMKDH 579 (671)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~ 579 (671)
.++.++|.+.|++..+. + +...+..|-..|.. .++.++|.++|++..+.
T Consensus 74 ~~d~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGL-N---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 34444444444444332 1 23333333333433 34444444444444433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0047 Score=61.06 Aligned_cols=143 Identities=8% Similarity=-0.014 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042546 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557 (671)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 557 (671)
...+..+...+.+.|++++|...|++..+ ..|+... +...|+.+++...+ . ...|..+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla 237 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHH
Confidence 45577777778888888999888888776 2344331 11222222222111 0 12455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHH-HHcCCH
Q 042546 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVD-PF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAF-FQARRH 632 (671)
Q Consensus 558 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~-~~~g~~ 632 (671)
.+|.+.|++++|++.+++..+. .|+.. .+ ..+|...|++++|+..|++.....+.+...+..+.... ...+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666543 33321 11 34445666666666666666655444444555444442 233455
Q ss_pred HHHHHHHHhch
Q 042546 633 SEAQDLLSKCP 643 (671)
Q Consensus 633 ~~A~~~~~~m~ 643 (671)
+++.++|++|.
T Consensus 316 ~~a~~~~~~~l 326 (338)
T 2if4_A 316 QKQKEMYKGIF 326 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 55556665554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.14 Score=54.29 Aligned_cols=133 Identities=11% Similarity=0.027 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcC-ChHHHHH
Q 042546 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQR--GFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSG-TSDDAIA 603 (671)
Q Consensus 530 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g-~~~~A~~ 603 (671)
++++.+.++.+.+. -.-+..+|+.--..+.+.| +++++++.++++.+.... +...+ ..++.+.| ..+++.+
T Consensus 89 ~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHH
Confidence 55566666665543 2234445555555555555 456666666666553211 12222 22233445 5666666
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHhchHhhhccHHHHHHHHhhhcCCCC
Q 042546 604 FLKGMTSKRFPSMSVVLCLFAAFFQA--------------RRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSGGDS 665 (671)
Q Consensus 604 ~~~~m~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~~g~~ 665 (671)
+++++++..+-|...|.....++.+. +++++|.+.+++.....+..+.++.+..-+...+.+
T Consensus 166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 66666666666666666666555552 345666666666555455555666555555544433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.019 Score=48.76 Aligned_cols=52 Identities=13% Similarity=-0.046 Sum_probs=37.5
Q ss_pred HhcCChHHHHHHHHHhhhC-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 593 SKSGTSDDAIAFLKGMTSK-------RFPSMSVV----LCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~-------~~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
.+.|++++|+..+++.... .+.+...| .....+|...|++++|++.|++..+
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3445555555555444443 55567778 8999999999999999999999654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0078 Score=59.47 Aligned_cols=144 Identities=9% Similarity=-0.027 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV 490 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 490 (671)
+..+...+.+.|++++|...|++..+. .|+... +...|+.+++...+. ...|..+..+|.+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 566677778899999999999987754 244331 112233333322221 1255666666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH-HHhcCCHHH
Q 042546 491 AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH-TTYEELIKN-LLVQRGFKD 568 (671)
Q Consensus 491 ~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~-~~~~g~~~~ 568 (671)
.|++++|...+++..+ .. ..+...|..+..+|...|++++|...|++... +.|+. ..+..+... ....+..++
T Consensus 243 ~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLT-EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp TTCCHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred cCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777665 21 22455666666777777777777777776653 23332 233333333 223455566
Q ss_pred HHHHHHHHHh
Q 042546 569 ALSLLCLMKD 578 (671)
Q Consensus 569 A~~l~~~m~~ 578 (671)
+.++|+.|..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 6667776653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.012 Score=47.25 Aligned_cols=79 Identities=15% Similarity=0.061 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 461 EANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNC 540 (671)
Q Consensus 461 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (671)
+|.+.|++..+.. +.+...+..+...|...|++++|...|++..+ .. +.+...|..+..+|...|+.++|...|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD-FD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566677766553 34566777777888888888888888888776 22 234556777777788888888888888776
Q ss_pred HH
Q 042546 541 VR 542 (671)
Q Consensus 541 ~~ 542 (671)
..
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.078 Score=44.13 Aligned_cols=110 Identities=13% Similarity=-0.026 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 042546 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCV----AGDLDKA 497 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~a 497 (671)
++.++|.+.|++..+.| .|+.. |-..|...+.+++|.+.|++..+.| +...+..+-..|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46778888888888777 34433 6666667777888888888887754 56777777777777 7888888
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 042546 498 ADCFQKMVEKEGTSHAGYAIDLLVNTYCS----KNRAIDACKFVHNCVRE 543 (671)
Q Consensus 498 ~~~~~~m~~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 543 (671)
.++|++..+ .| +...+..|-..|.. .++.++|.+.|+...+.
T Consensus 81 ~~~~~~Aa~-~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 81 AQYYSKACG-LN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 888888887 54 45667777777777 78888888888887763
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.015 Score=45.35 Aligned_cols=60 Identities=5% Similarity=-0.011 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHM 469 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (671)
..+..+...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.|++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444444444332 223334444444444444444444444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.026 Score=57.45 Aligned_cols=111 Identities=9% Similarity=-0.019 Sum_probs=74.8
Q ss_pred hcCCHHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChH
Q 042546 526 SKNRAIDACKFVHNCVREY--DLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSD 599 (671)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~ 599 (671)
..|++++|..++++..... -+.|+ ..+++.|...|...|++++|+.++++..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL---------------------- 367 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII---------------------- 367 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH----------------------
Confidence 3467888888877665421 22333 2467777888888888888888777654
Q ss_pred HHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhchH-----hhhccHHHHHHHHhhhc
Q 042546 600 DAIAFLKGMTSKRFPS-MSVVLCLFAAFFQARRHSEAQDLLSKCPR-----YVRNHADVLNLLYSKKS 661 (671)
Q Consensus 600 ~A~~~~~~m~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~l~~~m~~ 661 (671)
.+++...-...|+ ..+|+.|...|...|++++|+.++++..+ .+.+++...++...|.+
T Consensus 368 ---~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 368 ---KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIES 432 (433)
T ss_dssp ---HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHC
T ss_pred ---HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHhc
Confidence 2233222222243 35688899999999999999999998543 34578888888777764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.11 Score=58.05 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=24.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 454 SSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 454 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
.+.|++++|+++.+. ..+...|..+...+.+.++++.|.+.|.++.
T Consensus 663 l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 345555555555432 1244555555555555555555555555553
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.029 Score=43.60 Aligned_cols=66 Identities=12% Similarity=0.017 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 440 IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 440 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
+-+...|..+...|.+.|++++|...|++..+.. +.+...|..+..+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3467788999999999999999999999998875 33567899999999999999999999999876
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.2 Score=53.07 Aligned_cols=174 Identities=8% Similarity=-0.089 Sum_probs=127.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDC----------IDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE 348 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 348 (671)
..-++|++.++.+.... +.+..+|+.--..+.+.|+ ++++++.++.+.+..- -+..+|+.--..+.+
T Consensus 43 ~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 45678899999987643 5667888877777777676 8999999999988743 378889988888888
Q ss_pred CC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHH
Q 042546 349 RN--MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG-RMG 425 (671)
Q Consensus 349 ~g--~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~ 425 (671)
.+ +++++++.++++.+.. +-+...|+---..+.+.| ..+
T Consensus 120 l~~~~~~~el~~~~k~l~~d--------------------------------------~~N~~aW~~R~~~l~~l~~~~~ 161 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD--------------------------------------ERNFHCWDYRRFVAAQAAVAPA 161 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC--------------------------------------TTCHHHHHHHHHHHHHTCCCHH
T ss_pred cccccHHHHHHHHHHHHhhc--------------------------------------cccccHHHHHHHHHHHcCCChH
Confidence 88 6799999999988531 223334555445556667 788
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 042546 426 ECNKILKAMEEGGFIASSNMKSKIAFRLSSA--------------GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA 491 (671)
Q Consensus 426 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 491 (671)
++.+.++++.+.. +-|...|+-....+.+. +.++++.+.+++..... +-|...|+..-..+.+.
T Consensus 162 ~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~ 239 (567)
T 1dce_A 162 EELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRA 239 (567)
T ss_dssp HHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcC
Confidence 8999988888765 46778888777766653 45788888888887654 33667788777777776
Q ss_pred CCHH
Q 042546 492 GDLD 495 (671)
Q Consensus 492 g~~~ 495 (671)
+..+
T Consensus 240 ~~~~ 243 (567)
T 1dce_A 240 EPHD 243 (567)
T ss_dssp CCCS
T ss_pred CCcc
Confidence 6633
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.018 Score=48.82 Aligned_cols=98 Identities=9% Similarity=-0.042 Sum_probs=65.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK----------DEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
.+.+.+++|.+.++...+.. +.+...|+.+-.++...+++ ++|+..|++..+.. +-+..+|..+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 45567788888888887765 55777777777777776654 47777777777653 22456677777777
Q ss_pred HhcC-----------CHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 042546 489 CVAG-----------DLDKAADCFQKMVEKEGTSHAGYAIDLLV 521 (671)
Q Consensus 489 ~~~g-----------~~~~a~~~~~~m~~~~g~~p~~~~~~~li 521 (671)
...| ++++|.+.|++..+ +.|+...|..-+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 6653 67777777777665 455554444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.066 Score=40.19 Aligned_cols=62 Identities=23% Similarity=0.298 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 444 NMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 444 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
..+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 345555555566666666666666655442 22344555555555555666666655555554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.051 Score=55.31 Aligned_cols=114 Identities=9% Similarity=-0.041 Sum_probs=69.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhc
Q 042546 522 NTYCSKNRAIDACKFVHNCVREY--DLKPW----HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKS 595 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~ 595 (671)
..+.+.|++++|..++++..... -+.|+ ..+++.|...|...|++++|+.++++..
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L------------------ 356 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM------------------ 356 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH------------------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH------------------
Confidence 33456677788887777776421 12233 2367777777888888888888777664
Q ss_pred CChHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhchH-----hhhccHHHHHHHHhhh
Q 042546 596 GTSDDAIAFLKGMTSKRFPS-MSVVLCLFAAFFQARRHSEAQDLLSKCPR-----YVRNHADVLNLLYSKK 660 (671)
Q Consensus 596 g~~~~A~~~~~~m~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~l~~~m~ 660 (671)
.+++...-...|+ ..+++.|...|...|++++|+.++++..+ .+.+++...++...|.
T Consensus 357 -------~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~ 420 (429)
T 3qwp_A 357 -------EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE 420 (429)
T ss_dssp -------HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred -------HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 2222222222232 34577778888888888888888877543 2345666665555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.47 Score=38.22 Aligned_cols=140 Identities=10% Similarity=0.036 Sum_probs=89.6
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAA 498 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~ 498 (671)
.-.|.+++..++..+... ..+..-||.+|.-....-+-+-..++++.+-+. -| ...+|++....
T Consensus 18 ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 345777777777777765 345566677776666666655555555554321 11 13445555555
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042546 499 DCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKD 578 (671)
Q Consensus 499 ~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 578 (671)
..+-.+-. +......-++.....|+-|.-.+++..+.. +..|+....-.+..+|.+.|+..+|.+++.+.-+
T Consensus 82 ~C~~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 82 ECGVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 55544433 445566667777778888888888877543 4567777777778888888888888888888877
Q ss_pred CCCC
Q 042546 579 HGFP 582 (671)
Q Consensus 579 ~~~~ 582 (671)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 7754
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.047 Score=42.05 Aligned_cols=56 Identities=20% Similarity=0.148 Sum_probs=28.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--H---HHHHHhcCChHHHHHHHHHhhhCCCCC
Q 042546 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDP--F---IKYVSKSGTSDDAIAFLKGMTSKRFPS 615 (671)
Q Consensus 558 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t--~---~~~l~~~g~~~~A~~~~~~m~~~~~p~ 615 (671)
..+.+.|++++|++.+++..+. .|+... + ...+...|++++|...|++..+..+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3455566666666666665543 333222 1 233345566666666666665544433
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.089 Score=53.45 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=65.2
Q ss_pred ccCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 042546 313 REDCIDRFWKVLDEMRSK---GYEME----METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSK 385 (671)
Q Consensus 313 ~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~ 385 (671)
..|++++|+.++++..+. -+-|+ ..+++.|...|...|++++|..++++.++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-------------------- 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-------------------- 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--------------------
Confidence 457899999999887652 22233 578899999999999999999999987631
Q ss_pred cccHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 386 QLDMRLFSKVVRVFRENGNVLT-DAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
.+...-. ..|+ ..+++.|-..|...|++++|..++++..+
T Consensus 370 ----------~~~~lG~-~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 370 ----------YSKHYPV-YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp ----------HHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------HHHHcCC-CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 1100001 1122 23578888888888888888888877653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.7 Score=51.48 Aligned_cols=27 Identities=7% Similarity=-0.255 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 042546 443 SNMKSKIAFRLSSAGKKDEANEFMDHM 469 (671)
Q Consensus 443 ~~~~~~li~~~~~~g~~~~A~~~~~~m 469 (671)
...|..+...+.+.|+++.|.+.|..+
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344444444444444444444444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.18 Score=51.25 Aligned_cols=99 Identities=12% Similarity=0.017 Sum_probs=68.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 307 MASVLGREDCIDRFWKVLDEMRSKG---YEME----METCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLR 379 (671)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~ 379 (671)
.+..+.+.|++++|+.++++..+.. +.|+ ..+++.+...|...|++++|+.++++.+..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i-------------- 358 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP-------------- 358 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------------
Confidence 3556778899999999999887541 2232 567888999999999999999999987631
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLT-DAMLNSVLKALISVGRMGECNKILKAMEE 436 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 436 (671)
.+...-. ..|+ ..+++.|...|...|++++|..++++..+
T Consensus 359 ----------------~~~~lg~-~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 359 ----------------YRIFFPG-SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ----------------HHHHSCS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHcCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 0100001 1121 23577788888888888888888877653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.085 Score=40.53 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=41.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSN-MKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
...+.+.|++++|...|++..+.. +.+.. .|..+...|.+.|++++|.+.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345667788888888888777654 34556 77777777888888888888888777653
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.12 Score=43.70 Aligned_cols=98 Identities=10% Similarity=-0.033 Sum_probs=78.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCCh----------HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCI----------DRFWKVLDEMRSKGYEM-EMETCVKVLGRFS 347 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~ 347 (671)
+.+++|.+.++...+.. +.+...|+.+-.++.+.+++ ++|+..|++..+. .| +..+|..+-.+|.
T Consensus 16 ~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHH
Confidence 56889999999887644 66888999888888888765 5999999999886 34 5788999999998
Q ss_pred hCC-----------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042546 348 ERN-----------MVKEAVDLYEFAMACKNKPSVNCCTFLLRKIV 382 (671)
Q Consensus 348 ~~g-----------~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~ 382 (671)
..| ++++|++.|++..+ +.|+...|...+...-
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 774 89999999999986 4777777666555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.62 Score=45.48 Aligned_cols=73 Identities=8% Similarity=0.017 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042546 511 SHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF 588 (671)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~ 588 (671)
..+..+|.++...+...|++++|...+++.... .|+...|..+-..+.-.|++++|.+.+++... +.|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 345555655555555556777777777666653 25655555555566666777777776666654 34555444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.48 Score=46.28 Aligned_cols=61 Identities=11% Similarity=-0.038 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHhcCChHHHHHHHHHhhhC
Q 042546 549 WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF---IKYVSKSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~---~~~l~~~g~~~~A~~~~~~m~~~ 611 (671)
+..+|.++...+...|++++|.+.+++....+ |+...+ ...+.-.|+.++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44455544444444555555555555555543 443322 22234455555555555555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.84 E-value=1.3 Score=38.07 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=23.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 455 SAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMV 505 (671)
Q Consensus 455 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 505 (671)
+.|+++.|.++.+++ -+...|..|-......|+++-|.+.|.+..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 355555555554443 234455555555555555555555555543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.21 Score=41.77 Aligned_cols=90 Identities=11% Similarity=0.053 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHH--HHHHHHhcC---ChHHHHHHHHHhhhCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 042546 566 FKDALSLLCLMKDHGFPPFVDP--FIKYVSKSG---TSDDAIAFLKGMTSKRFP--SMSVVLCLFAAFFQARRHSEAQDL 638 (671)
Q Consensus 566 ~~~A~~l~~~m~~~~~~p~~~t--~~~~l~~~g---~~~~A~~~~~~m~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 638 (671)
...+.+-|.+....|....... |..+|++.+ ++++|+.+|+...+...| +...+-.|.-+|.+.|++++|.+.
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3445555555555444222222 355666666 566788888877775533 345556677778888888888888
Q ss_pred HHhchHhhhccHHHHHH
Q 042546 639 LSKCPRYVRNHADVLNL 655 (671)
Q Consensus 639 ~~~m~~~~~~~~~~~~l 655 (671)
++...+.-+.+..+..+
T Consensus 94 ~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHCTTCHHHHHH
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 88877655555555444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.27 E-value=1.6 Score=37.38 Aligned_cols=48 Identities=8% Similarity=-0.001 Sum_probs=33.4
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 042546 310 VLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAM 363 (671)
Q Consensus 310 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~ 363 (671)
...+.|+++.|.++.+++ -+...|..|-....+.|+++-|.+.|....
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 345667777777776665 256677777777777777777777777654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.22 Score=38.83 Aligned_cols=47 Identities=21% Similarity=0.089 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHH---HHHHHhhh
Q 042546 614 PSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADV---LNLLYSKK 660 (671)
Q Consensus 614 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~l~~~m~ 660 (671)
+....+..+..+|.+.|++++|..++++.....+.++.+ ..+|..+.
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~~~~ 93 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM 93 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHHHHHHHH
Confidence 455667777777777788777777777766554444433 33444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.76 Score=34.85 Aligned_cols=66 Identities=17% Similarity=-0.009 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 407 TDAMLNSVLKALISVGR---MGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 407 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
|...+..+..++...++ .++|..+|++..+.. +-+......+...+.+.|++++|...|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34445555555543333 577777777777654 4455666666677777777777777777777653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.29 E-value=0.61 Score=38.94 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=6.0
Q ss_pred HhcCCHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKM 504 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m 504 (671)
.+.|++++|.+.++.+
T Consensus 82 ~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 82 YRLKEYEKALKYVRGL 97 (152)
T ss_dssp HHTSCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 3333333333333333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.45 E-value=3.5 Score=31.08 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 441 ASSNMKSKIAFRLSSAGK---KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 441 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
.|...+..+..++...++ .++|..++++..+.. +-+......+-..+.+.|++++|...|+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555555555544333 567777777766553 23445555666666677777777777777665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=91.42 E-value=1.3 Score=34.26 Aligned_cols=65 Identities=8% Similarity=-0.026 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGG------FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
...+..|...+.+.|+++.|...|+...+.- -.+....+..+..+|.+.|++++|...+++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445667777778888888888887765421 1234566777777777777777777777777654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.37 E-value=13 Score=37.54 Aligned_cols=165 Identities=8% Similarity=0.019 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--H
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIA-S----SNMKSKIAFRLSSAGKKDEANEFMDHMEA----SGSDVGD--K 479 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~~--~ 479 (671)
...|...|...|++.+|.+++.++...-... + ...|...+..|...+++..|..++.++.. ....|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 4567788999999999999999987431112 2 34677788889999999999999988642 2222322 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 480 MWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVN----TYCSKNRAIDACKFVHNCVREYDLKPWHTTYEE 555 (671)
Q Consensus 480 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 555 (671)
.+...+..+...+++.+|.+.|.+..+.....-|...+..++. +..-.+....-..+....... ...++...|..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~~ 298 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND-NNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH-SSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc-ccccccHHHHH
Confidence 4677777888899999998888877652222223322222221 111222222223333333332 22356678888
Q ss_pred HHHHHHhc--CCHHHHHHHHHHH
Q 042546 556 LIKNLLVQ--RGFKDALSLLCLM 576 (671)
Q Consensus 556 li~~~~~~--g~~~~A~~l~~~m 576 (671)
++.+|... .+++.+.+.|...
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~~ 321 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEPV 321 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCSS
T ss_pred HHHHHHhchHhhhHHHHHHHHHH
Confidence 88888763 4566666666543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.45 E-value=2.1 Score=34.35 Aligned_cols=91 Identities=12% Similarity=0.075 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCH-HH--HHHHHHhcCChHH---HHHHHHHhhhCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 042546 565 GFKDALSLLCLMKDHGFPPFV-DP--FIKYVSKSGTSDD---AIAFLKGMTSKRFP--SMSVVLCLFAAFFQARRHSEAQ 636 (671)
Q Consensus 565 ~~~~A~~l~~~m~~~~~~p~~-~t--~~~~l~~~g~~~~---A~~~~~~m~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 636 (671)
.+..+.+-|.+....|. |+. .. |..+|.+.....+ ++.+++.+.+...| .....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445555554444343 333 22 3556666665444 78888877776533 3344455677888888888888
Q ss_pred HHHHhchHhhhccHHHHHHH
Q 042546 637 DLLSKCPRYVRNHADVLNLL 656 (671)
Q Consensus 637 ~~~~~m~~~~~~~~~~~~l~ 656 (671)
+.++.+.+.-+....+..|-
T Consensus 95 ~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHH
Confidence 88888776655555554443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=89.97 E-value=6.7 Score=31.71 Aligned_cols=69 Identities=14% Similarity=0.065 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCC
Q 042546 299 HDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNK 368 (671)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~ 368 (671)
.+....+.-++.+...|+-|+-.+++.++.. +.+|+....-.+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4556667777888888888888888888533 34678888888889999999999999999888877764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=88.64 E-value=4 Score=38.19 Aligned_cols=92 Identities=9% Similarity=0.113 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCH
Q 042546 424 MGECNKILKAMEEGGFIAS---SNMKSKIAFRLSSA-----GKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA-GDL 494 (671)
Q Consensus 424 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~ 494 (671)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35566666666654 344 45777788888774 88888888888887764322366666777777774 888
Q ss_pred HHHHHHHHHHHHcCCCC--CCHHHHH
Q 042546 495 DKAADCFQKMVEKEGTS--HAGYAID 518 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~--p~~~~~~ 518 (671)
+++.+.+++... .... |+....+
T Consensus 257 ~~a~~~L~kAL~-a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALA-IDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHH-CCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHc-CCCCCCCChhHHH
Confidence 888888888877 5555 6644433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.44 E-value=7 Score=42.33 Aligned_cols=54 Identities=13% Similarity=0.130 Sum_probs=48.9
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 590 ~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
..|-..|+++.|+++-++.....|-+..+|..|..+|.+.|+++.|+-.++.||
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344567999999999999988777889999999999999999999999999998
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.18 E-value=21 Score=33.92 Aligned_cols=132 Identities=11% Similarity=0.102 Sum_probs=68.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 042546 392 FSKVVRVFRENGNVLTDAMLNSVLKALISVGRMG-ECNKILKAME----EGG--FIASSNMKSKIAFRLSSAGKKDEANE 464 (671)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 464 (671)
+.-+++.+.+.+.+++......++..+.....-+ .=.++.+.+. +.| -.-|......+...|.+.|++.+|+.
T Consensus 76 a~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 76 IFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 3334444444555555555555554444422111 1122333332 222 12466777888888888999988888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 465 FMDHMEASGSDVGDKMWVSLIKGHCVA---GDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCV 541 (671)
Q Consensus 465 ~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (671)
.|-. |-.-|...+..++.-+... |...++ |...-.+++. |.-.|++..|..+|+...
T Consensus 156 H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~---------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 156 YFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTV---------------AEFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHH---------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred HHHh----CCCccHHHHHHHHHHHHHhcCCCCcchH---------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 7641 1111345555555544443 433332 2222333443 345688888888888776
Q ss_pred Hh
Q 042546 542 RE 543 (671)
Q Consensus 542 ~~ 543 (671)
++
T Consensus 216 ~~ 217 (312)
T 2wpv_A 216 ER 217 (312)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.53 E-value=6.6 Score=32.48 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH-HHHHHHHHH------HHhcCCHHHHHHHHHHHHHCCC
Q 042546 408 DAMLNSVLKALISVGRM------GECNKILKAMEEGGFIASS-NMKSKIAFR------LSSAGKKDEANEFMDHMEASGS 474 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~~~~-~~~~~li~~------~~~~g~~~~A~~~~~~m~~~g~ 474 (671)
..+|-..+...-+.|+. ++..++|++.... ++|+. ..|...|.. +...+++++|.++|+.+...+
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h- 90 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC- 90 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-
Confidence 34455555555555665 5666666665542 23331 111111111 112356666666666665432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 042546 475 DVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAG 514 (671)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~ 514 (671)
+-=...|.....-=.+.|+++.|.+++..... .+.+|..
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG-~~~k~~~ 129 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVE-RGAVPLE 129 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBCHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-cCCCcHH
Confidence 11144444444444566666666666666665 5544443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=86.47 E-value=34 Score=36.21 Aligned_cols=286 Identities=8% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 042546 343 LGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG 422 (671)
Q Consensus 343 i~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 422 (671)
.....+.|+++.+.++-..+....+.|-. .|..+...+......+...+..-. .+.+.....-+.-+..+.+.+
T Consensus 13 a~~a~~~~~~~~~~~l~~~l~~~pL~~yl-~y~~l~~~l~~~~~~ev~~Fl~~~-----~~~p~~~~Lr~~~l~~l~~~~ 86 (618)
T 1qsa_A 13 IKQAWDNRQMDVVEQMMPGLKDYPLYPYL-EYRQITDDLMNQPAVTVTNFVRAN-----PTLPPARTLQSRFVNELARRE 86 (618)
T ss_dssp HHHHHHTTCHHHHHHHSGGGTTSTTHHHH-HHHHHHHTGGGCCHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCCcHHHH-HHHHHHhCcccCCHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHhCC
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 042546 423 RMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQ 502 (671)
Q Consensus 423 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 502 (671)
++......+.. . +.+...-.....+....|+.++|......+-..| ......+..++..+.+.|.+.... ++.
T Consensus 87 ~w~~~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~-~~~ 159 (618)
T 1qsa_A 87 DWRGLLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLA-YLE 159 (618)
T ss_dssp CHHHHHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHH-HHH
T ss_pred CHHHHHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHH-HHH
Q ss_pred HHHH-----------------------------------------cCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 042546 503 KMVE-----------------------------------------KEGTSHAGYAIDLLVNTYCS--KNRAIDACKFVHN 539 (671)
Q Consensus 503 ~m~~-----------------------------------------~~g~~p~~~~~~~li~~~~~--~g~~~~A~~~~~~ 539 (671)
+|.. .....|+...-..++.++.+ ..+.+.|...+..
T Consensus 160 R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~ 239 (618)
T 1qsa_A 160 RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPS 239 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHh
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHhcCChHHHHHHHHHhhhCCCCCH
Q 042546 540 CVREYDLKPWHT--TYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF-IKYVSKSGTSDDAIAFLKGMTSKRFPSM 616 (671)
Q Consensus 540 m~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~-~~~l~~~g~~~~A~~~~~~m~~~~~p~~ 616 (671)
..+...+.+... .+..+...+...+...++...+..........+..-+ +..-.+.|+++.|...|+.|........
T Consensus 240 ~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~ 319 (618)
T 1qsa_A 240 LAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKD 319 (618)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSH
T ss_pred hhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccH
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 617 SVVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
.-.-=+..++.+.|+.++|..+|.+
T Consensus 320 r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 320 EWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHH
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=86.14 E-value=6.7 Score=36.71 Aligned_cols=95 Identities=8% Similarity=0.095 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHc-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-C
Q 042546 280 EPKKALIFFRWAEESGFVKHD---ESSYNAMASVLGR-----EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSER-N 350 (671)
Q Consensus 280 ~~~~A~~~f~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g 350 (671)
....|...+++..+- .|+ ...|..+...|.+ .|+.++|.+.|++..+.+-.-+..++......+++. |
T Consensus 178 ~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 345666777766653 566 6789999999999 499999999999999874222478888888888885 9
Q ss_pred ChHHHHHHHHHHHhCCCC--CCHHHHHHH
Q 042546 351 MVKEAVDLYEFAMACKNK--PSVNCCTFL 377 (671)
Q Consensus 351 ~~~~a~~l~~~m~~~g~~--p~~~~~~~l 377 (671)
+.+++.+.+++.+..... |+....+.+
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 999999999999987766 766554443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=85.30 E-value=13 Score=36.74 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=60.6
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhh------ccHHHHHHHHhhhc
Q 042546 588 FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVR------NHADVLNLLYSKKS 661 (671)
Q Consensus 588 ~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~------~~~~~~~l~~~m~~ 661 (671)
++..+...|+.++|...+..+....+.+...|..++.+|.+.|+..+|.+.|++...... ..++..+++..+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~ 256 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILR 256 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHc
Confidence 345566889999999999999888888999999999999999999999999998765432 34566677766654
Q ss_pred C
Q 042546 662 G 662 (671)
Q Consensus 662 ~ 662 (671)
.
T Consensus 257 ~ 257 (388)
T 2ff4_A 257 Q 257 (388)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.08 E-value=34 Score=34.50 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 422 GRMGECNKILKAMEEG-----GFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA 471 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 471 (671)
|+++.|.+.+-.+.+. +..........++..|.+.|+++...+.+..+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6778888777666542 2344566677788888888888887777766543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=84.54 E-value=4.2 Score=32.55 Aligned_cols=18 Identities=17% Similarity=0.122 Sum_probs=7.5
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042546 524 YCSKNRAIDACKFVHNCV 541 (671)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~ 541 (671)
+.+.|++++|.+.++.+.
T Consensus 84 ~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 84 NYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 334444444444444443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.93 E-value=5.9 Score=39.35 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEA-----SGSDVGDKM 480 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 480 (671)
..++..+...|+.++|...+..+.... +-+...|..+|.+|.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 445566667777777777666665543 44666777777777777777777777766542 366665443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=82.29 E-value=67 Score=35.69 Aligned_cols=260 Identities=8% Similarity=0.032 Sum_probs=132.0
Q ss_pred HHHHccCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhCCChHHHHHHHHHHHhCCC-------CCCHHHHHHHHH
Q 042546 309 SVLGREDCIDRFWKVLDEMRSKGYEMEMETC--VKVLGRFSERNMVKEAVDLYEFAMACKN-------KPSVNCCTFLLR 379 (671)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~l~~~m~~~g~-------~p~~~~~~~ll~ 379 (671)
-|....|+.++++.+++.....+-..+..+- ..+--+....|..+++.+++.......- .+....-.++=-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3466778888887777665432111233322 2333445566666677777666553211 011111222222
Q ss_pred HHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcC
Q 042546 380 KIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAF--RLSSAG 457 (671)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g 457 (671)
+++..|..+.+....+...+...........--+|-..+.-.|+-+-...++..+.+. .+..+...+.- ++...|
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCC
Confidence 2333444454444444444432221000011112223344556766667777766543 23333333333 344678
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHH-HH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 042546 458 KKDEANEFMDHMEASGSDVGDKM-WV---SLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDA 533 (671)
Q Consensus 458 ~~~~A~~~~~~m~~~g~~~~~~~-~~---~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A 533 (671)
+.+.+..+.+.+... .|... |. ++.-+|+..|+.....+++..+.+ . ...++.-...+--+....|+.+.+
T Consensus 539 ~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~-d-~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 539 RQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-D-SNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp CGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-C-SCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred ChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-C-CcHHHHHHHHHHHHhhccCCHHHH
Confidence 888888888887763 33332 33 233456777888777778888876 2 222333222222344446666667
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 042546 534 CKFVHNCVREYDLKPWHTTYEELIKNLLVQRGF-KDALSLLCLMKD 578 (671)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 578 (671)
.+++..+.+ ...|.+.--.++.-|....|.. .+|++++..+..
T Consensus 614 ~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 614 PRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 777766654 2345544444444455545443 567778887763
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.19 E-value=7.2 Score=42.21 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHME 470 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 470 (671)
.+.+...|+++.|+++-++....- +-+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344567899999999999887654 4567899999999999999999999988763
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=81.43 E-value=22 Score=29.46 Aligned_cols=64 Identities=8% Similarity=0.061 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 421 VGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 421 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
.+++++|.++|+.+.+.+ +.=...|-....--.+.|++..|.+++......+.+| .....+.|.
T Consensus 73 i~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 378999999999987653 2227777777777788999999999999998877554 333444433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.37 E-value=17 Score=27.59 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIK 558 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 558 (671)
+.-+..+-++.+.. ..+.|+..+..+.+.+|.+.+++.-|.++|+.++.|.+- ...+|..+++
T Consensus 25 D~~e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 44455666666666 667777777777777777777777777777777766433 3345666554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=80.17 E-value=48 Score=32.67 Aligned_cols=162 Identities=12% Similarity=-0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHHhcCC-----HHHHHHHHHHHHHhCCCCCC
Q 042546 478 DKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYA---IDLLVNTYCSKNR-----AIDACKFVHNCVREYDLKPW 549 (671)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~---~~~li~~~~~~g~-----~~~A~~~~~~m~~~~~~~p~ 549 (671)
......+...|.+.|+.++..+++...+.-.+.-|-..| ...||+.+....+ ++-..+.++....+...-..
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH--------HHHHHhcCChHHHHHHHHHhhh---CCCCCHHH
Q 042546 550 HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPF--------IKYVSKSGTSDDAIAFLKGMTS---KRFPSMSV 618 (671)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~--------~~~l~~~g~~~~A~~~~~~m~~---~~~p~~~~ 618 (671)
...=.-+...|...|++.+|.+++.++.+.--..|..++ +.+|...+++..+..++..... ...+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Q ss_pred ----HHHHHHHHH-HcCCHHHHHHHH
Q 042546 619 ----VLCLFAAFF-QARRHSEAQDLL 639 (671)
Q Consensus 619 ----~~~l~~~~~-~~g~~~~A~~~~ 639 (671)
..+-...+. ..++|.+|...|
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHH
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=80.06 E-value=17 Score=27.53 Aligned_cols=64 Identities=11% Similarity=0.171 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 042546 386 QLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIA 450 (671)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 450 (671)
..|.-.+.+-++.+....+.|++.+..+.+.+|-+.+++..|.++|+-.+.+- .....+|..++
T Consensus 23 ~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 23 DIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp TCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred CccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 33444455555555566677777777777777777777777777777666432 12233455444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 671 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.83 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.81 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.38 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.94 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.93 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.82 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.79 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.78 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.73 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.64 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.58 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.5 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.43 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.1 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.05 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.98 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.97 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.92 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.87 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.8 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 97.78 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.75 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.61 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.57 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.56 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.41 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.27 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.21 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.2 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.17 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.14 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.04 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 96.92 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.91 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.89 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.85 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 96.83 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.8 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.76 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.71 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.47 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.46 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.07 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.05 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.01 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.68 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 95.6 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.26 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.07 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.52 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 93.51 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.77 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 89.42 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.13 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 87.33 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 81.08 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=5.3e-16 Score=156.56 Aligned_cols=216 Identities=12% Similarity=0.003 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
...+..+...+...|+.++|...+++..+.. +-+...|..+...+...|++++|...+++....+ ..+...+..+...
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 246 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV 246 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHH
Confidence 3456667777888899999999998887654 4456788888889999999999999999887765 4566778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 567 (671)
+.+.|++++|.+.|++..+ .. +-+..++..+...|...|+.++|.+.++..... .+.+...+..+...+.+.|+++
T Consensus 247 ~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 247 YYEQGLIDLAIDTYRRAIE-LQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHH-TC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHCCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHH
Confidence 9999999999999998877 22 234667888888999999999999999988764 4556778888888899999999
Q ss_pred HHHHHHHHHHhCCCCCCHHH----HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 042546 568 DALSLLCLMKDHGFPPFVDP----FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARR 631 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t----~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~ 631 (671)
+|++.+++..+ +.|+... +...|.+.|++++|+..|++..+..|.+...|..+..+|.+.|+
T Consensus 323 ~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 323 EAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999998875 4566433 24566789999999999999988777788889999999988775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.1e-15 Score=154.08 Aligned_cols=360 Identities=12% Similarity=0.025 Sum_probs=278.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDL 358 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l 358 (671)
|++++|.+.|+++.+.. +-+...+..+...|.+.|++++|...|++..+.. +-+..+|..+...|.+.|++++|+..
T Consensus 13 G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~ 89 (388)
T d1w3ba_ 13 GDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccc
Confidence 99999999999987643 4568899999999999999999999999998763 23578999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 359 YEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGG 438 (671)
Q Consensus 359 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 438 (671)
+....+........ ................. ........ ....................+....+...+.......
T Consensus 90 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T d1w3ba_ 90 YRHALRLKPDFIDG-YINLAAALVAAGDMEGA--VQAYVSAL-QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165 (388)
T ss_dssp HHHHHHHCTTCHHH-HHHHHHHHHHHSCSSHH--HHHHHHHH-HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC
T ss_pred cccccccccccccc-ccccccccccccccccc--cccccccc-ccccccccccccccccccccchhhhhHHHHHHhhccC
Confidence 99998654333222 22222222222222211 11111111 1223344455566667778888888888888877654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 042546 439 FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAID 518 (671)
Q Consensus 439 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 518 (671)
+.+...+..+...+...|++++|...+++..+.. +-+...|..+...+...|++++|...+++..+ .. ..+...+.
T Consensus 166 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~ 241 (388)
T d1w3ba_ 166 -PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALS-LS-PNHAVVHG 241 (388)
T ss_dssp -TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH-HC-TTCHHHHH
T ss_pred -cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHH-Hh-hhHHHHHH
Confidence 4567788888999999999999999999988764 33567889999999999999999999999887 33 34566788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHh
Q 042546 519 LLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP----FIKYVSK 594 (671)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t----~~~~l~~ 594 (671)
.+...|.+.|++++|...|++..+. .+-+..+|..+...+...|++++|++.++..... .|+... +...+.+
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHH
Confidence 8889999999999999999998763 2335678889999999999999999999988764 343322 2566678
Q ss_pred cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHH
Q 042546 595 SGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVL 653 (671)
Q Consensus 595 ~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 653 (671)
.|++++|+..+++..+..|.+...|..+..+|.+.|++++|.+.|++..+.-++.++++
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 376 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999988777889999999999999999999999999765545555554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=7e-11 Score=115.39 Aligned_cols=224 Identities=8% Similarity=-0.041 Sum_probs=179.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (671)
....+.+.|++++|...|++..+.. +-+..+|..+...|...|++++|...|++..+.. +-+...|..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 4456789999999999999999875 4567899999999999999999999999988764 3357788889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042546 494 LDKAADCFQKMVEKEGTSHAG----------------YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELI 557 (671)
Q Consensus 494 ~~~a~~~~~~m~~~~g~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 557 (671)
+++|.+.++.... .. |+. ......+..+...+..++|.+.|.+......-.++...+..+.
T Consensus 103 ~~~A~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~ 179 (323)
T d1fcha_ 103 QRQACEILRDWLR-YT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179 (323)
T ss_dssp HHHHHHHHHHHHH-TS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred ccccccchhhHHH-hc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 9999999999876 22 211 1111222334455678889999988876544455677888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 042546 558 KNLLVQRGFKDALSLLCLMKDHGFPPFVDP----FIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 558 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t----~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~ 633 (671)
..+...|++++|+..+++.... .|+... +...+...|++++|...|++..+..+.+...|..+..+|.+.|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 180 VLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHH
Confidence 9999999999999999998764 455432 2456679999999999999999877778889999999999999999
Q ss_pred HHHHHHHhchH
Q 042546 634 EAQDLLSKCPR 644 (671)
Q Consensus 634 ~A~~~~~~m~~ 644 (671)
+|.+.|++..+
T Consensus 258 ~A~~~~~~al~ 268 (323)
T d1fcha_ 258 EAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=9.2e-10 Score=107.17 Aligned_cols=257 Identities=11% Similarity=-0.060 Sum_probs=188.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 042546 342 VLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISV 421 (671)
Q Consensus 342 li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 421 (671)
....+.+.|++++|+..|+++.+. .| -+..+|..+..+|...
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~--~P------------------------------------~~~~a~~~lg~~~~~~ 66 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ--DP------------------------------------KHMEAWQYLGTTQAEN 66 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--CT------------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CC------------------------------------CCHHHHHHHHHHHHHc
Confidence 345577899999999999998853 22 2334577788889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--------------CHHHHHHHHHH
Q 042546 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDV--------------GDKMWVSLIKG 487 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--------------~~~~~~~li~~ 487 (671)
|++++|...|++..+.. +-+...|..+...|...|++++|.+.+++........ +.......+..
T Consensus 67 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (323)
T d1fcha_ 67 EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 145 (323)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred CChHHHHHHHHhhhccc-cccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHH
Confidence 99999999999988764 4567788888999999999999999999887642110 01111122333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFK 567 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 567 (671)
+...+..++|.+.+.+..+...-.++..++..+...+...|++++|...|++.... .+-+...|..+...|.+.|+++
T Consensus 146 ~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~ 223 (323)
T d1fcha_ 146 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE 223 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccch
Confidence 44556778888888887763444556778888889999999999999999998764 2235678888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHH----HHHHHHhcCChHHHHHHHHHhhhCC-----------CCCHHHHHHHHHHHHHcCCH
Q 042546 568 DALSLLCLMKDHGFPPFVDP----FIKYVSKSGTSDDAIAFLKGMTSKR-----------FPSMSVVLCLFAAFFQARRH 632 (671)
Q Consensus 568 ~A~~l~~~m~~~~~~p~~~t----~~~~l~~~g~~~~A~~~~~~m~~~~-----------~p~~~~~~~l~~~~~~~g~~ 632 (671)
+|++.|++..+. .|+... +..+|.+.|++++|+..|++..+.. ......|..+-.++...|+.
T Consensus 224 ~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~ 301 (323)
T d1fcha_ 224 EAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 301 (323)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred hHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCH
Confidence 999999998864 465432 3456678999999999999876521 12334677777788777887
Q ss_pred HHHHHHHHh
Q 042546 633 SEAQDLLSK 641 (671)
Q Consensus 633 ~~A~~~~~~ 641 (671)
+.+.....+
T Consensus 302 d~~~~~~~~ 310 (323)
T d1fcha_ 302 DAYGAADAR 310 (323)
T ss_dssp GGHHHHHTT
T ss_pred HHHHHHHHh
Confidence 766554433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.94 E-value=3.2e-07 Score=87.95 Aligned_cols=161 Identities=7% Similarity=-0.043 Sum_probs=67.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcC
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK-GHCVAG 492 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g 492 (671)
.+..+.+.|+++.|..+|+.+.+........+|...+..+.+.|+.+.|.++|+++.+.+.. +...|..... -+...|
T Consensus 105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~ 183 (308)
T d2onda1 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcc
Confidence 33333444444444444444443321111234444444444444555555555544443311 1122211111 122234
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW--HTTYEELIKNLLVQRGFKDAL 570 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~ 570 (671)
+.+.|..+|+.+.+ . .+.+...|...++.+.+.|+++.|..+|++.....+..|+ ...|...+.--...|+.+.+.
T Consensus 184 ~~~~a~~i~e~~l~-~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~ 261 (308)
T d2onda1 184 DKSVAFKIFELGLK-K-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CHHHHHHHHHHHHH-H-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CHHHHHHHHHHHHH-h-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45555555555444 1 2223344444555555555555555555554443223322 224444444444455555555
Q ss_pred HHHHHHH
Q 042546 571 SLLCLMK 577 (671)
Q Consensus 571 ~l~~~m~ 577 (671)
++++++.
T Consensus 262 ~~~~r~~ 268 (308)
T d2onda1 262 KVEKRRF 268 (308)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.93 E-value=2.8e-07 Score=88.36 Aligned_cols=186 Identities=13% Similarity=0.030 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 422 GRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCF 501 (671)
Q Consensus 422 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~ 501 (671)
+..++|..+|++..+...+.+...|...+..+.+.|+.+.|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45577888888887655556677888888888899999999999999887643334567888899999999999999999
Q ss_pred HHHHHcCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042546 502 QKMVEKEGTSHAGYAIDLLVNT-YCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHG 580 (671)
Q Consensus 502 ~~m~~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 580 (671)
+++.+ .+.. +...|...... +...|+.+.|..+|+.+... ...+...|...++.+.+.|+.++|..+|++..+..
T Consensus 158 ~~al~-~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 158 KKARE-DART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHT-STTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHH-hCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 99887 3322 22333333322 34468899999999998875 34456788888998899999999999999987654
Q ss_pred -CCCCH-H----HHHHHHHhcCChHHHHHHHHHhhhC
Q 042546 581 -FPPFV-D----PFIKYVSKSGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 581 -~~p~~-~----t~~~~l~~~g~~~~A~~~~~~m~~~ 611 (671)
..|+. . .++..-...|+.+.+.++.+++.+.
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34432 1 2233335789999999998888763
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=5.2e-06 Score=80.59 Aligned_cols=160 Identities=13% Similarity=0.027 Sum_probs=71.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CC----HHHHH
Q 042546 483 SLIKGHCVAGDLDKAADCFQKMVEKE---GTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLK-PW----HTTYE 554 (671)
Q Consensus 483 ~li~~~~~~g~~~~a~~~~~~m~~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-p~----~~~~~ 554 (671)
.+...+...|+++.+...+....... +.......+..+...+...+....+...+.......... .. ...+.
T Consensus 138 ~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (366)
T d1hz4a_ 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 217 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHH
Confidence 33444445555555555554444310 111122233333344444555555555544433211100 00 11233
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHhcCChHHHHHHHHHhhh-----CCCC-CHHHHHHH
Q 042546 555 ELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD------PFIKYVSKSGTSDDAIAFLKGMTS-----KRFP-SMSVVLCL 622 (671)
Q Consensus 555 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~------t~~~~l~~~g~~~~A~~~~~~m~~-----~~~p-~~~~~~~l 622 (671)
.+...+...|+.++|.+.+++........+.. .+...+...|++++|...++.... +..| ....+..+
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 297 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHH
Confidence 33344445556666665555544322111110 112334455666666666655442 1111 23456666
Q ss_pred HHHHHHcCCHHHHHHHHHhc
Q 042546 623 FAAFFQARRHSEAQDLLSKC 642 (671)
Q Consensus 623 ~~~~~~~g~~~~A~~~~~~m 642 (671)
..+|.+.|++++|.+.+++.
T Consensus 298 a~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 66777777777777776653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=9.8e-07 Score=84.52 Aligned_cols=215 Identities=7% Similarity=0.013 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCC-ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEM-EMETCVKVLGRFSERN-MVKEAVDLYEFAMACKNKPSVNCCTFLL 378 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g-~~~~a~~l~~~m~~~g~~p~~~~~~~ll 378 (671)
...|+-+-..+.+.+.+++|++++++..+. .| +...|+....++...| ++++|+..++...+.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~------------- 107 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE------------- 107 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-------------
Confidence 355666667778888899999999998886 34 5667788887877766 488999888887642
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042546 379 RKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGK 458 (671)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 458 (671)
.+-+..+|+.+...+.+.|++++|+..++++.+.. +.+...|+.+...+.+.|+
T Consensus 108 -------------------------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~ 161 (315)
T d2h6fa1 108 -------------------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKL 161 (315)
T ss_dssp -------------------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred -------------------------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHh
Confidence 12234457777778888899999999999888765 5678889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 459 KDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD------LDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAID 532 (671)
Q Consensus 459 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~ 532 (671)
+++|++.++++.+.. +-+...|+.+...+.+.+. +++|.+.+....+ .. +-+...|+-+...+.. ...++
T Consensus 162 ~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~-~~-P~~~~~~~~l~~ll~~-~~~~~ 237 (315)
T d2h6fa1 162 WDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK-LV-PHNESAWNYLKGILQD-RGLSK 237 (315)
T ss_dssp CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHTT-TCGGG
T ss_pred hHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHH-hC-CCchHHHHHHHHHHHh-cChHH
Confidence 999999999988764 3356677766665555544 5678877777766 22 2245556555554443 44577
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042546 533 ACKFVHNCVREYDLKPWHTTYEELIKNL 560 (671)
Q Consensus 533 A~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (671)
+.+.++..........+...+..+...|
T Consensus 238 ~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 238 YPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp CHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 7777776654322222344444555444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=3.5e-06 Score=81.88 Aligned_cols=264 Identities=11% Similarity=-0.014 Sum_probs=179.9
Q ss_pred CCChHHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHHHccCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHH
Q 042546 278 GDEPKKALIFFRWAEESGFVKHD-----ESSYNAMASVLGREDCIDRFWKVLDEMRSKGY-EME----METCVKVLGRFS 347 (671)
Q Consensus 278 ~~~~~~A~~~f~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~ 347 (671)
.|++++|.++|++..... +.+ ...++.+...|...|++++|...|++..+..- .++ ..++..+...+.
T Consensus 25 ~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (366)
T d1hz4a_ 25 DGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 102 (366)
T ss_dssp TTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 499999999999887532 222 34677788889999999999999988765311 112 345566777788
Q ss_pred hCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCC--CC-HHHHHHHHHHHHhcCCH
Q 042546 348 ERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNV--LT-DAMLNSVLKALISVGRM 424 (671)
Q Consensus 348 ~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~ 424 (671)
..|++..+...+...... ....... +. ...+..+...+...|++
T Consensus 103 ~~~~~~~a~~~~~~al~~---------------------------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 149 (366)
T d1hz4a_ 103 AQGFLQTAWETQEKAFQL---------------------------------INEQHLEQLPMHEFLVRIRAQLLWAWARL 149 (366)
T ss_dssp HTTCHHHHHHHHHHHHHH---------------------------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHH---------------------------------hHhcccchhhHHHHHHHHHHHHHHHhcch
Confidence 889999999888876521 0001111 11 12355566778889999
Q ss_pred HHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHHHHHHhcCCH
Q 042546 425 GECNKILKAMEEGG----FIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG--SDVG----DKMWVSLIKGHCVAGDL 494 (671)
Q Consensus 425 ~~A~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~----~~~~~~li~~~~~~g~~ 494 (671)
+.+...+....... ......++..+...+...++..++...+.+..... .... ...+..+...+...|+.
T Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (366)
T d1hz4a_ 150 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 229 (366)
T ss_dssp HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccH
Confidence 99999998877532 22334566667777888999999988887764321 1111 23456666778888999
Q ss_pred HHHHHHHHHHHHcCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCCC-HHHHHHHHHHHHhcCCHH
Q 042546 495 DKAADCFQKMVEKEGTS---HAGYAIDLLVNTYCSKNRAIDACKFVHNCVRE---YDLKPW-HTTYEELIKNLLVQRGFK 567 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~ 567 (671)
++|...++...+ .... .....+..+...|...|++++|...++..... .+..|+ ...+..+-..|.+.|+++
T Consensus 230 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (366)
T d1hz4a_ 230 AAAANWLRHTAK-PEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 308 (366)
T ss_dssp HHHHHHHHHSCC-CCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHH-hccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence 999999888765 2222 22345566778888999999999998876532 233333 345667777888899999
Q ss_pred HHHHHHHHHH
Q 042546 568 DALSLLCLMK 577 (671)
Q Consensus 568 ~A~~l~~~m~ 577 (671)
+|.+.+++..
T Consensus 309 ~A~~~l~~Al 318 (366)
T d1hz4a_ 309 DAQRVLLDAL 318 (366)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=1.7e-06 Score=82.78 Aligned_cols=224 Identities=10% Similarity=0.046 Sum_probs=169.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG-KKDEANEFMDHMEASGSDVGDKMWVSLIKGH 488 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 488 (671)
.++-+-..+.+.+..++|+++++++.+.. +-+...|+....++...| ++++|++.++...+.. +-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 56677777889999999999999999875 556778898888888876 5999999999998764 34678899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---
Q 042546 489 CVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG--- 565 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--- 565 (671)
.+.|++++|.+.++++.+ . -+-+...|..+...+.+.|++++|.+.|+...+. -.-+...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~-~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILN-Q-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHTCCTTHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HhhccHHHHHHHHhhhhh-h-hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccch
Confidence 999999999999999987 2 2235788999999999999999999999999874 22356677776666655444
Q ss_pred ---HHHHHHHHHHHHhCCCCCCHHH-H--HHHHHhcCChHHHHHHHHHhhhC--CCCCHHHHHHHHHHHHHc--CCHHHH
Q 042546 566 ---FKDALSLLCLMKDHGFPPFVDP-F--IKYVSKSGTSDDAIAFLKGMTSK--RFPSMSVVLCLFAAFFQA--RRHSEA 635 (671)
Q Consensus 566 ---~~~A~~l~~~m~~~~~~p~~~t-~--~~~l~~~g~~~~A~~~~~~m~~~--~~p~~~~~~~l~~~~~~~--g~~~~A 635 (671)
+++|++.+.+..+. .|+... + ...+......+++...++...+. ...+...+..++..|... +..+.+
T Consensus 199 ~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 67899998888764 455432 2 34444555567888888777663 235677777888887653 444444
Q ss_pred HHHHHh
Q 042546 636 QDLLSK 641 (671)
Q Consensus 636 ~~~~~~ 641 (671)
...+++
T Consensus 277 ~~~~~k 282 (315)
T d2h6fa1 277 EDILNK 282 (315)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.64 E-value=1.1e-06 Score=81.71 Aligned_cols=194 Identities=12% Similarity=-0.084 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 042546 445 MKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTY 524 (671)
Q Consensus 445 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~ 524 (671)
+|..+...|.+.|++++|.+.|++..+.. +-+..+|+.+..+|.+.|++++|.+.|++..+ .. +-+..++..+..+|
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE-LD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH-HH-hhhhhhHHHHHHHH
Confidence 44444555556666666666666655442 22445555666666666666666666666655 11 11233455555556
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCC----hHH
Q 042546 525 CSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGT----SDD 600 (671)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~----~~~ 600 (671)
...|++++|...|+...+. .+.+......+..++.+.+..+.+..+..........+........+..... .+.
T Consensus 116 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 193 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6666666666666655543 1122222222233333444444444444444332222222222222211111 111
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhch
Q 042546 601 AIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCP 643 (671)
Q Consensus 601 A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 643 (671)
+...+.......+....+|..+...|...|++++|.+.|++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 236 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1111111111011123455666777777777777777777644
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=5.8e-07 Score=83.57 Aligned_cols=201 Identities=11% Similarity=-0.004 Sum_probs=133.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
+|..+-.+|.+.|++++|...|++..+.. +-+..+|+.+..+|.+.|++++|.+.|++..+.. +-+..++..+...|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 56677889999999999999999998765 5678899999999999999999999999998864 235667888899999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRG---- 565 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---- 565 (671)
..|++++|.+.|+...+ .. +.+......+..++.+.+..+.+..+....... .++...++ ++..+.....
T Consensus 117 ~~g~~~~A~~~~~~al~-~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQ-DD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTL 190 (259)
T ss_dssp HTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHH
T ss_pred HHhhHHHHHHHHHHHHh-hc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHH
Confidence 99999999999999987 32 224444444444555666666666555555432 22222222 2222222211
Q ss_pred HHHHHHHHHHHHhCCCCCCHH----HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHH
Q 042546 566 FKDALSLLCLMKDHGFPPFVD----PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVL 620 (671)
Q Consensus 566 ~~~A~~l~~~m~~~~~~p~~~----t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~ 620 (671)
.+.+...+..... ..|+.. .+...+...|++++|...|+......|.+...|.
T Consensus 191 ~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 191 MERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222221111111 011111 1245567899999999999999987765544443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.50 E-value=1.5e-06 Score=84.29 Aligned_cols=214 Identities=8% Similarity=-0.105 Sum_probs=136.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHH
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG--KKDEANEFMDHMEASGSDVGDKMWVS-LIKGHCVAGDLD 495 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~g~~~ 495 (671)
...|++++|+..++...+.. +.+...|..+..++...+ +.++|...+.++.+.. +++...+.. ....+...+..+
T Consensus 84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence 44556677777777777654 456666776666666655 3778888888876653 234555443 335666678888
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 042546 496 KAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCL 575 (671)
Q Consensus 496 ~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 575 (671)
+|.+.++...+ .. +-+...|+.+...+.+.|++++|...+...... .|+ ...+...+...+..+++...+..
T Consensus 162 ~Al~~~~~~i~-~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~ 233 (334)
T d1dcea1 162 EELAFTDSLIT-RN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHR 233 (334)
T ss_dssp HHHHHHHTTTT-TT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHH
T ss_pred HHHHHHHHHHH-cC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHH
Confidence 88888877765 22 235666777777777777777765555443321 111 11233334555666777777776
Q ss_pred HHhCCCCCCHH----HHHHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchH
Q 042546 576 MKDHGFPPFVD----PFIKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPR 644 (671)
Q Consensus 576 m~~~~~~p~~~----t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 644 (671)
..... |+.. .....+...|+.++|...+.+.....+.+...|..+..+|.+.|++++|.+.+++..+
T Consensus 234 ~l~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 234 WLLGR--AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHSC--CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHhC--cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66542 2221 2245556667788888888877776666677788888888888888888888887654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.43 E-value=1.4e-06 Score=84.35 Aligned_cols=273 Identities=8% Similarity=-0.045 Sum_probs=176.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH-HHHHH---HHHHHHhC-------CChHHHHHHHHHHHhCCCCCCHH
Q 042546 304 YNAMASVLGREDCIDRFWKVLDEMRSKGYEMEM-ETCVK---VLGRFSER-------NMVKEAVDLYEFAMACKNKPSVN 372 (671)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~---li~~~~~~-------g~~~~a~~l~~~m~~~g~~p~~~ 372 (671)
++.++....+.+..++|+++++...+. .|+. ..|+. ++...... |.+++|+.+++...+.
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~------- 102 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------- 102 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh-------
Confidence 334444444444558888888888775 4553 34443 22333333 3355666666655431
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHH-
Q 042546 373 CCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVG--RMGECNKILKAMEEGGFIASSNMKSKI- 449 (671)
Q Consensus 373 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~l- 449 (671)
.+.+...|..+..++...+ ++++|...+.+..+.. +++...+...
T Consensus 103 -------------------------------~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~ 150 (334)
T d1dcea1 103 -------------------------------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRR 150 (334)
T ss_dssp -------------------------------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -------------------------------CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHH
Confidence 2233344555555555554 4789999999888764 4556665544
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 042546 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529 (671)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 529 (671)
...+...+..++|+..++...+.. +-+...|+.+...+.+.|+.++|...+....+ +.|+ ...+...+...+.
T Consensus 151 ~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~---~~~~~~~~~~l~~ 223 (334)
T d1dcea1 151 FVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN---VLLK---ELELVQNAFFTDP 223 (334)
T ss_dssp HHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH---HHHH---HHHHHHHHHHHCS
T ss_pred HHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH---hHHH---HHHHHHHHHHhcc
Confidence 466777899999999999888765 34677888888889999988877666555443 1111 1223334556677
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHhcCChHHHHHHH
Q 042546 530 AIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDP----FIKYVSKSGTSDDAIAFL 605 (671)
Q Consensus 530 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t----~~~~l~~~g~~~~A~~~~ 605 (671)
.+++...+...... ..++...+..+...+...|+.++|.+.+.+.... .|+... +...+...|+.++|..++
T Consensus 224 ~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~ 299 (334)
T d1dcea1 224 NDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPE--NKWCLLTIILLMRALDPLLYEKETLQYF 299 (334)
T ss_dssp SCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred hhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77888888777653 3344455666677777888999999988887643 344322 245556889999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHH
Q 042546 606 KGMTSKRFPSMSVVLCLFAAFFQ 628 (671)
Q Consensus 606 ~~m~~~~~p~~~~~~~l~~~~~~ 628 (671)
+...+..|.+...|..|...+.-
T Consensus 300 ~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 300 STLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHCcccHHHHHHHHHHHhH
Confidence 99988776667777777666553
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.10 E-value=0.0021 Score=60.40 Aligned_cols=295 Identities=14% Similarity=0.042 Sum_probs=172.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042546 298 KHDESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFL 377 (671)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~l 377 (671)
.||..--..+.+-|.+.|.++.|..+|..+.. |..++..+.+.++++.|.++..... +..+|..+
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~ 75 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 75 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence 45555555667777788888888888876553 5667777788888888888776542 45567677
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 378 LRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG 457 (671)
Q Consensus 378 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 457 (671)
..++......... .+.......+......++..|-..|.+++...+++...... ..+...++-++..|++.+
T Consensus 76 ~~~l~~~~e~~la-------~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 76 CFACVDGKEFRLA-------QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHTTCHHHH-------HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHhCcHHHHH-------HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 7766655432211 11123344555666788899999999999999998775432 567778888999998864
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 042546 458 KKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFV 537 (671)
Q Consensus 458 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 537 (671)
.++ +.+.+....-. .-..-++..|-+.+.++++.-++..+.+ .=+++..++.+..+..++..+.
T Consensus 148 -~~k---l~e~l~~~s~~---y~~~k~~~~c~~~~l~~elv~Ly~~~~~---------~~~A~~~~i~~~~~~~~~~~f~ 211 (336)
T d1b89a_ 148 -PQK---MREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEE---------YDNAIITMMNHPTDAWKEGQFK 211 (336)
T ss_dssp -HHH---HHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTC---------HHHHHHHHHHSTTTTCCHHHHH
T ss_pred -hHH---HHHHHHhcccc---CCHHHHHHHHHHcCChHHHHHHHHhcCC---------HHHHHHHHHHcchhhhhHHHHH
Confidence 333 33444332112 2234456677777777777777666544 1122222333333333333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCHH
Q 042546 538 HNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYVSKSGTSDDAIAFLKGMTSKRFPSMS 617 (671)
Q Consensus 538 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~~~g~~~~A~~~~~~m~~~~~p~~~ 617 (671)
+-..+. .|...|-..+..|.... .+-...++..+.. .-|..-.+..+.+.+++.....+++.....+ +..
T Consensus 212 e~~~k~----~N~e~~~~~i~~yL~~~-p~~i~~lL~~v~~---~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n--~~~ 281 (336)
T d1b89a_ 212 DIITKV----ANVELYYRAIQFYLEFK-PLLLNDLLMVLSP---RLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN--NKS 281 (336)
T ss_dssp HHHHHC----SSTHHHHHHHHHHHHHC-GGGHHHHHHHHGG---GCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC--CHH
T ss_pred HHHHcc----CChHHHHHHHHHHHHcC-HHHHHHHHHHhcc---CCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC--hHH
Confidence 333321 23345555566665432 3333444444432 3455667777788889998999998877654 467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHh
Q 042546 618 VVLCLFAAFFQARRHSEAQDLLSK 641 (671)
Q Consensus 618 ~~~~l~~~~~~~g~~~~A~~~~~~ 641 (671)
+.+++.+.|...++++.-.+.+++
T Consensus 282 vn~al~~lyie~~d~~~l~~~i~~ 305 (336)
T d1b89a_ 282 VNESLNNLFITEEDYQALRTSIDA 305 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcchhHHHHHHHHH
Confidence 899999999999997665555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.05 E-value=0.00019 Score=67.20 Aligned_cols=192 Identities=9% Similarity=-0.026 Sum_probs=93.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC-CCCHHHHHHHHH
Q 042546 452 RLSSAGKKDEANEFMDHMEAS----GSDVG-DKMWVSLIKGHCVAGDLDKAADCFQKMVEK---EGT-SHAGYAIDLLVN 522 (671)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~g~-~p~~~~~~~li~ 522 (671)
.|...|++++|.+.|.+..+. +-.++ ..+|..+...|.+.|++++|.+.+++..+. .+- .....++..+..
T Consensus 46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 125 (290)
T d1qqea_ 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (290)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence 344455555555555544321 10111 134555555555555555555555544320 110 011223334444
Q ss_pred HHH-hcCCHHHHHHHHHHHHHh---CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHH--
Q 042546 523 TYC-SKNRAIDACKFVHNCVRE---YDLKP-WHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFV-------DPF-- 588 (671)
Q Consensus 523 ~~~-~~g~~~~A~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-------~t~-- 588 (671)
.|- ..|++++|.+.+.+.... .+..+ -..+|..+...|...|++++|++.|++.......... ..+
T Consensus 126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (290)
T d1qqea_ 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (290)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHH
Confidence 443 347777777777655421 11111 1234566666777777777777777776653221111 011
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCC--CCH---HHHHHHHHHHHH--cCCHHHHHHHHHhch
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRF--PSM---SVVLCLFAAFFQ--ARRHSEAQDLLSKCP 643 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~--p~~---~~~~~l~~~~~~--~g~~~~A~~~~~~m~ 643 (671)
...+...|+.+.|...+++.....+ ++. .....++.++.. .+.+++|+..|+++.
T Consensus 206 ~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 1222356777777777777766433 222 233445555544 245777777776654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.98 E-value=0.00019 Score=67.25 Aligned_cols=201 Identities=11% Similarity=0.001 Sum_probs=134.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEG----GFIA-SSNMKSKIAFRLSSAGKKDEANEFMDHMEAS----GS-DVGDKM 480 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~ 480 (671)
|.-....|...|++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|.+.+++..+. |- .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 667778899999999999999987652 2112 2357889999999999999999999976532 11 111345
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHHc---CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCH-----
Q 042546 481 WVSLIKGHC-VAGDLDKAADCFQKMVEK---EGTSH-AGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWH----- 550 (671)
Q Consensus 481 ~~~li~~~~-~~g~~~~a~~~~~~m~~~---~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----- 550 (671)
+..+...|- ..|++++|.+.+++..+. .+..+ -..++..+...|...|++++|...|++........+..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 666666664 469999999999887541 12222 13457778899999999999999999987642221111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH--HHH----HHHHHh--cCChHHHHHHHHHhhhC
Q 042546 551 TTYEELIKNLLVQRGFKDALSLLCLMKDHGFP-PFV--DPF----IKYVSK--SGTSDDAIAFLKGMTSK 611 (671)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~--~t~----~~~l~~--~g~~~~A~~~~~~m~~~ 611 (671)
..|...+..+...|+++.|.+.+++..+.... ++. ..+ +..+.. .+.+++|+..|+++.+.
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 12344455667789999999999998764321 111 112 233322 35578888888766553
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=0.00023 Score=61.78 Aligned_cols=122 Identities=8% Similarity=-0.102 Sum_probs=94.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (671)
...+...|+++.|.+.|.++. +|+..+|..+-..|.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 445678899999999998753 6788889999999999999999999999998765 44677888899999999999
Q ss_pred HHHHHHHHHHHHcCCC--------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 495 DKAADCFQKMVEKEGT--------------SHA-GYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 495 ~~a~~~~~~m~~~~g~--------------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
++|.+.|++... ..- .++ ..++..+-.+|.+.|++++|.+.|.....
T Consensus 87 ~~A~~~~~kAl~-~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 87 DLAIKDLKEALI-QLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHHHH-TTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-hCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999988765 210 011 24445566677788888888888777654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=4.4e-05 Score=60.37 Aligned_cols=98 Identities=15% Similarity=-0.035 Sum_probs=54.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 042546 560 LLVQRGFKDALSLLCLMKDHGFPPFVDPF----IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEA 635 (671)
Q Consensus 560 ~~~~g~~~~A~~l~~~m~~~~~~p~~~t~----~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A 635 (671)
+.+.|++++|+..|++..+. .|+.... ..++.+.|++++|+..++...+..+.+...|..+..+|...|++++|
T Consensus 13 ~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A 90 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 90 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHH
Confidence 44555566666666555542 3333221 23334556666666666666655555666666666666666666666
Q ss_pred HHHHHhchHhhhccHHHHHHHHhh
Q 042546 636 QDLLSKCPRYVRNHADVLNLLYSK 659 (671)
Q Consensus 636 ~~~~~~m~~~~~~~~~~~~l~~~m 659 (671)
+..+++..+..++.+.+...+..+
T Consensus 91 ~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 91 KRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 666666555445555555444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.00019 Score=60.18 Aligned_cols=92 Identities=8% Similarity=-0.065 Sum_probs=71.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
..-..|.+.|++++|...|.+..+.. +.+...|..+...|.+.|++++|...|++..+.. +-+..+|..+..+|...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 34456778888888888888887765 5567778888888888888888888888887664 345577888888888888
Q ss_pred CHHHHHHHHHHHHH
Q 042546 493 DLDKAADCFQKMVE 506 (671)
Q Consensus 493 ~~~~a~~~~~~m~~ 506 (671)
++++|...+++..+
T Consensus 93 ~~~eA~~~~~~a~~ 106 (159)
T d1a17a_ 93 KFRAALRDYETVVK 106 (159)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888888876
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=0.00014 Score=57.26 Aligned_cols=90 Identities=10% Similarity=-0.003 Sum_probs=62.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 042546 415 LKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDL 494 (671)
Q Consensus 415 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 494 (671)
-..+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..+....+.. +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 345566777777777777776654 4556667777777777777777777777776654 34566677777777777777
Q ss_pred HHHHHHHHHHHH
Q 042546 495 DKAADCFQKMVE 506 (671)
Q Consensus 495 ~~a~~~~~~m~~ 506 (671)
++|...|++..+
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 777777777765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.87 E-value=0.0089 Score=54.28 Aligned_cols=237 Identities=11% Similarity=-0.034 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSS----AGKKDEANEFMDHMEASGSDVGDKMWVS 483 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 483 (671)
+..+..|-..+-+.+++++|.+.|++..+.| |...+..|-..|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3445666667778999999999999998865 55666667777766 668999999999888765 3344444
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 484 LIKGHCV----AGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYC----SKNRAIDACKFVHNCVREYDLKPWHTTYEE 555 (671)
Q Consensus 484 li~~~~~----~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 555 (671)
+...+.. ..+.+.|...++...+ .|.... ...+...+. .......+...+...... .+...+..
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~-~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 147 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACD-LKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACDL----NDGDGCTI 147 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhh-hhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhcc----cccchhhh
Confidence 4444432 5678899999998887 554322 222322333 244567777777766542 35677777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----hcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 042546 556 LIKNLLV----QRGFKDALSLLCLMKDHGFPPFVDPFIKYVS----KSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFF 627 (671)
Q Consensus 556 li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l~----~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~ 627 (671)
|...|.. ..+...+...++...+.|..+...-+...+. ...+.++|+.+|+...+.+ +...+..|...|.
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~ 225 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQY 225 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred hhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHH
Confidence 7777775 5677888888888877653222222222332 2568999999999988865 5667777888887
Q ss_pred H----cCCHHHHHHHHHhchHhhhccHHHHHHHHhhhcC
Q 042546 628 Q----ARRHSEAQDLLSKCPRYVRNHADVLNLLYSKKSG 662 (671)
Q Consensus 628 ~----~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m~~~ 662 (671)
+ ..+.++|.++|++..+ .....+...+.+|..+
T Consensus 226 ~G~g~~~n~~~A~~~~~kAa~--~g~~~A~~~l~~l~~~ 262 (265)
T d1ouva_ 226 NGEGVTRNEKQAIENFKKGCK--LGAKGACDILKQLKIK 262 (265)
T ss_dssp TTSSSSCCSTTHHHHHHHHHH--HTCHHHHHHHHTCCCC
T ss_pred cCCCCccCHHHHHHHHHHHHH--CcCHHHHHHHHHHHHH
Confidence 5 3478999999998764 3466677888777654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=0.00049 Score=59.63 Aligned_cols=128 Identities=13% Similarity=0.082 Sum_probs=95.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 042546 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529 (671)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 529 (671)
...+...|++++|++.|.++. .|+..+|..+-..|...|++++|.+.|++..+ .. +-+...|..+-.+|.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~-ld-p~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN-RD-KHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH-Hh-hhhhhhHHHHHHHHHhhcc
Confidence 345667899999999988653 67888888899999999999999999999987 32 2356678888888999999
Q ss_pred HHHHHHHHHHHHHhCC-----------C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 042546 530 AIDACKFVHNCVREYD-----------L--KPW-HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583 (671)
Q Consensus 530 ~~~A~~~~~~m~~~~~-----------~--~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 583 (671)
+++|.+.|++...... . .++ ..++..+-.++.+.|++++|.+.++...+....|
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9999999988764210 0 011 2345556667888888999888888877654433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00044 Score=57.82 Aligned_cols=91 Identities=9% Similarity=-0.106 Sum_probs=67.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 042546 450 AFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNR 529 (671)
Q Consensus 450 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~ 529 (671)
...|.+.|++++|...|++..+.. +-+...|..+...|...|++++|.+.|++..+ .. +-+...|..+..+|...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~-~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHH-Hc-ccchHHHHHHHHHHHHcCC
Confidence 445667888888888888887764 34667777777888888888888888888776 22 2245677777778888888
Q ss_pred HHHHHHHHHHHHHh
Q 042546 530 AIDACKFVHNCVRE 543 (671)
Q Consensus 530 ~~~A~~~~~~m~~~ 543 (671)
+++|...|++....
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 88888888877753
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.75 E-value=0.00023 Score=62.24 Aligned_cols=95 Identities=11% Similarity=-0.065 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 410 MLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 410 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.+...-..|.+.|++++|...|.+..+.. +.+...|+.+..+|.+.|++++|+..|++..+.. +-+..+|..+..+|.
T Consensus 6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444555666666666666666655543 3455556666666666666666666666665432 123445555666666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 042546 490 VAGDLDKAADCFQKMVE 506 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~ 506 (671)
+.|++++|...|++..+
T Consensus 84 ~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 84 EMESYDEAIANLQRAYS 100 (201)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.61 E-value=0.0003 Score=61.48 Aligned_cols=95 Identities=13% Similarity=-0.034 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH--
Q 042546 512 HAGYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-PF-- 588 (671)
Q Consensus 512 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t~-- 588 (671)
|+...+...-..|.+.|++++|...|.+.... -+-+...|..+..+|.+.|++++|++.|++..+ +.|+.. ++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHH
Confidence 66666667777888888888888888887764 234666788888888888888888888888875 456542 22
Q ss_pred -HHHHHhcCChHHHHHHHHHhhh
Q 042546 589 -IKYVSKSGTSDDAIAFLKGMTS 610 (671)
Q Consensus 589 -~~~l~~~g~~~~A~~~~~~m~~ 610 (671)
..+|.+.|++++|...|+....
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 4556778888888888887765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.57 E-value=0.00037 Score=54.22 Aligned_cols=89 Identities=9% Similarity=0.061 Sum_probs=62.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 042546 414 VLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD 493 (671)
Q Consensus 414 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 493 (671)
+...+.+.|++++|...|++..+.. +-+...|..+...+.+.|++++|...|++..+.. +.+...|..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 3445667778888888887777654 3456777777777777777777777777776653 3356667777777777777
Q ss_pred HHHHHHHHHHH
Q 042546 494 LDKAADCFQKM 504 (671)
Q Consensus 494 ~~~a~~~~~~m 504 (671)
.++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00023 Score=56.34 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=54.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKK---DEANEFMDHMEASGSDVGD-KMWVSLIKGH 488 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~~~~-~~~~~li~~~ 488 (671)
.+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++. ++|+.+|+++...+..|+. .+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45555666666677777776666654 44556666666666554433 3466666666554322221 2455566666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 042546 489 CVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 489 ~~~g~~~~a~~~~~~m~~ 506 (671)
.+.|++++|.+.|+++.+
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 666666666666666655
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.00072 Score=53.31 Aligned_cols=100 Identities=12% Similarity=0.080 Sum_probs=62.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCC-HHHHHHHHH
Q 042546 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGD---LDKAADCFQKMVEKEGTSHA-GYAIDLLVN 522 (671)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~g~~p~-~~~~~~li~ 522 (671)
..+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++ .++|.++++++.+ ....|+ ..++..+-.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~-~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-ccCCchHHHHHHHHHH
Confidence 345666667777777777777777654 3455666666666665443 3457777777655 332233 235556666
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCHH
Q 042546 523 TYCSKNRAIDACKFVHNCVREYDLKPWHT 551 (671)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 551 (671)
+|.+.|++++|.+.|++..+ +.|+..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~---~~P~~~ 106 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQ---TEPQNN 106 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCH
T ss_pred HHHHHhhhHHHHHHHHHHHH---hCcCCH
Confidence 77777777777777777765 345543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.27 E-value=0.0015 Score=50.57 Aligned_cols=85 Identities=11% Similarity=-0.031 Sum_probs=42.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHH
Q 042546 452 RLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAI 531 (671)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~ 531 (671)
.+.+.|++++|...|++..+.. +-+..+|..+...+.+.|++++|...|++..+ . -+-+...+..+...|...|+.+
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~-~-~p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM-L-DPKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccc-c-ccccccchHHHHHHHHHCCCHH
Confidence 3445555555555555554442 12344555555555555555555555555544 1 1113444444555555555555
Q ss_pred HHHHHHHH
Q 042546 532 DACKFVHN 539 (671)
Q Consensus 532 ~A~~~~~~ 539 (671)
+|.+.|++
T Consensus 102 ~A~~~l~~ 109 (112)
T d1hxia_ 102 AALASLRA 109 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.21 E-value=0.07 Score=47.93 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHh
Q 042546 301 ESSYNAMASVLGREDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE----RNMVKEAVDLYEFAMA 364 (671)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~l~~~m~~ 364 (671)
+..+..|-..+-+.+++++|++.|++..+.| |...+..|-..|.. ..+...|...+.....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 3445555555666677777777777776665 44555555555543 3455566555555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.0026 Score=53.58 Aligned_cols=115 Identities=10% Similarity=-0.066 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW-------------HTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPP 583 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 583 (671)
+.-.-..+.+.|++++|...|.+........+. ..+|+-+..+|.+.|++++|++.++...+. .|
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~--~p 93 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--DS 93 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc--cc
Confidence 344455677888899999888887764322222 134555666677777777777777777653 45
Q ss_pred CHHH-H---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 042546 584 FVDP-F---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHS 633 (671)
Q Consensus 584 ~~~t-~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~ 633 (671)
+... + ..++...|++++|...|+...+..|.+......+..+..+.+...
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~ 147 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 147 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 4322 2 344567777777777777777766556666665555554444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.17 E-value=0.0043 Score=51.02 Aligned_cols=71 Identities=17% Similarity=0.013 Sum_probs=58.2
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHhh
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYSK 659 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~m 659 (671)
...|.+.|++++|+..++......|.+...|..+..+|...|++++|...|++..+..++..++...+...
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 144 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 144 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556889999999999999888888899999999999999999999999999877666666666555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.0075 Score=50.55 Aligned_cols=110 Identities=9% Similarity=-0.124 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 042546 479 KMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-------------GYAIDLLVNTYCSKNRAIDACKFVHNCVREYD 545 (671)
Q Consensus 479 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (671)
..+......+.+.|++++|...|.+..+.....+. ..+|+.+..+|.+.|++++|...++.....
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-- 91 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-- 91 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc--
Confidence 34555666788999999999999988762222221 245666778889999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042546 546 LKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVDPFIKYV 592 (671)
Q Consensus 546 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~t~~~~l 592 (671)
-+.+...|..+..+|...|++++|++.|++..+ +.|+.......+
T Consensus 92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~P~n~~~~~~l 136 (170)
T d1p5qa1 92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQL 136 (170)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHH
T ss_pred cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 233777888888999999999999999999886 467665554444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.0044 Score=49.13 Aligned_cols=95 Identities=9% Similarity=0.049 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGS-DVG-----DKMWVSL 484 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~-----~~~~~~l 484 (671)
+..+-..|.+.|++++|...|.+..+.+ +.+...|..+..+|.+.|++++|...++++.+... .++ ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3445566777788888888887777665 45677777777788888888888888777654210 011 1345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 042546 485 IKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 485 i~~~~~~g~~~~a~~~~~~m~~ 506 (671)
-..+...+++++|.+.|+....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 6666666777777777766554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.92 E-value=0.16 Score=47.06 Aligned_cols=136 Identities=13% Similarity=0.040 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHH
Q 042546 333 EMEMETCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLN 412 (671)
Q Consensus 333 ~p~~~t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (671)
.||..--..+..-|.+.|.++.|..+|..+.. |.
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------------------------------------------~~ 44 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------------------------------------------FG 44 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC----------------------------------------------HH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------------------------HH
Confidence 35555555677778888999999999987642 44
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 042546 413 SVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAG 492 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 492 (671)
.++..|.+.+++..|.+++... -+..+|..+...+.+......| .+.......+......++..|-..|
T Consensus 45 rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~ 113 (336)
T d1b89a_ 45 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRG 113 (336)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcC
Confidence 4555555555555555554432 2344555555555554444332 1111222334444445555555566
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 042546 493 DLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527 (671)
Q Consensus 493 ~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 527 (671)
..++...+++.... . -.++...++-++..|++.
T Consensus 114 ~~e~Li~~Le~~~~-~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 114 YFEELITMLEAALG-L-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp CHHHHHHHHHHHTT-S-TTCCHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHc-C-CccchHHHHHHHHHHHHh
Confidence 66655555555432 1 233444555555555554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.012 Score=46.44 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-----HHHHHHHH
Q 042546 447 SKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVEKEGTSHA-----GYAIDLLV 521 (671)
Q Consensus 447 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~-----~~~~~~li 521 (671)
-.+-..|.+.|++++|+..|.+..+.+ +.+...|..+-.+|.+.|++++|.+.++++.+...-.+. ..+|..+-
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345566777888888888888777664 345677777777888888888888888776651100111 23455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 042546 522 NTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~ 542 (671)
..+...+++++|.+.|.....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 666667777777777766554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.89 E-value=0.014 Score=48.81 Aligned_cols=63 Identities=6% Similarity=-0.078 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 409 AMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 409 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
..|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|.+.|++++|.+.|+...+.
T Consensus 78 ~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 78 SCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 346667777888888888888888887765 456778888888888888888888888888775
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.85 E-value=0.014 Score=49.26 Aligned_cols=120 Identities=12% Similarity=0.082 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 042546 413 SVLKALISVGRMGECNKILKAMEEG--GFI-ASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHC 489 (671)
Q Consensus 413 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 489 (671)
.........|++++|.+.|.+.... |-. ++. ...+.+...-..+.. .....+..+...+.
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~-------------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~ 78 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL-------------RDFQFVEPFATALVE----DKVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG-------------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC-------------cchHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3345668899999999999988763 211 110 000001111111110 01234555566666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCCCCCHH
Q 042546 490 VAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR----EYDLKPWHT 551 (671)
Q Consensus 490 ~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~ 551 (671)
+.|++++|...++.+.+. -+-+...|..++.+|.+.|+.++|.+.|+++.. ..|+.|...
T Consensus 79 ~~g~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HCCCchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 666666666666666551 122455566666666666666666666665432 246666654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=96.83 E-value=0.022 Score=46.54 Aligned_cols=106 Identities=10% Similarity=-0.072 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGGF----IASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIK 486 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 486 (671)
+..-...+.+.|++.+|...|.+..+.-. .++..... .... ....+|+.+..
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~~-------~~~~~~~Nla~ 75 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-----------------KKKN-------IEISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-----------------HHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-----------------hhhh-------HHHHHHhhHHH
Confidence 44455667888999999999988775210 11111000 0000 01234445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 487 GHCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 487 ~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
+|.+.|++++|.+.++...+ .. +.+..+|..+..+|...|++++|...|....+
T Consensus 76 ~~~~l~~~~~Al~~~~~al~-~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLK-ID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhcccc-cc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666665554 11 22445555555666666666666666665554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.80 E-value=0.016 Score=48.77 Aligned_cols=74 Identities=15% Similarity=0.091 Sum_probs=61.0
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhh----h--ccHHHHHHHHhhhcC
Q 042546 589 IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYV----R--NHADVLNLLYSKKSG 662 (671)
Q Consensus 589 ~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~----~--~~~~~~~l~~~m~~~ 662 (671)
...+.+.|++++|...++.+....+-+...|..++.+|.+.|+.++|++.|+++.... + ..++...++..+...
T Consensus 74 a~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il~~ 153 (179)
T d2ff4a2 74 AEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQ 153 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhC
Confidence 5666789999999999999999888899999999999999999999999999975432 2 245566777666543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.76 E-value=0.0061 Score=51.05 Aligned_cols=68 Identities=9% Similarity=-0.049 Sum_probs=52.0
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHH
Q 042546 590 KYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLY 657 (671)
Q Consensus 590 ~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~ 657 (671)
.++.+.|++++|+..+++..+..+.+...|..+..+|.+.|++++|.+.|++..+..+..+++...+.
T Consensus 85 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~ 152 (169)
T d1ihga1 85 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152 (169)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44567888888888888888877778888888888888888888888888887765555555544433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.71 E-value=0.049 Score=45.13 Aligned_cols=112 Identities=8% Similarity=-0.062 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042546 338 TCVKVLGRFSERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKA 417 (671)
Q Consensus 338 t~~~li~~~~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 417 (671)
.+......+.+.|++++|...|...... +-.......... .....+ ...+|+-+-.+
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~---------------~~~~~~~~~~~~-~~~~~~-------~~~~~~Nla~~ 73 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSW---------------LEMEYGLSEKES-KASESF-------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HTTCCSCCHHHH-HHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhhccchhhh-hhcchh-------HHHHHHhHHHH
Confidence 3444556677888888888888776531 000000000000 000000 01235667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
|.+.|++++|+..++...+.. +.+..+|..+..+|...|++++|...|++..+..
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888887765 5677788888888888888888888888887753
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.47 E-value=0.0037 Score=56.72 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=37.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 419 ISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 419 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
.+.|++++|...+++..+.. +.|...+..+...|+..|++++|.+.++...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45677777777777777665 456677777777777777777777777777654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.46 E-value=0.033 Score=46.24 Aligned_cols=115 Identities=10% Similarity=-0.019 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC--H-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042546 514 GYAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPW--H-----------TTYEELIKNLLVQRGFKDALSLLCLMKDHG 580 (671)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~-----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 580 (671)
...+.-.-..+.+.|++++|...|..........+. . ..|+-+..+|.+.|++++|++.+++..+.
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l- 93 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 93 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence 344555666778888888888888776543222221 1 13444555667777777777777777653
Q ss_pred CCCCH-HHH---HHHHHhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 042546 581 FPPFV-DPF---IKYVSKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQAR 630 (671)
Q Consensus 581 ~~p~~-~t~---~~~l~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~~g 630 (671)
.|+. ..+ ..++...|++++|...|+.+....|.+......+-.+..+.+
T Consensus 94 -~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 94 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3433 222 455567777777777777777766666666666555544444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.07 E-value=0.019 Score=46.41 Aligned_cols=71 Identities=6% Similarity=-0.124 Sum_probs=43.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 418 LISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAG----------KKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 418 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
|-+.+.+++|.+.|+...+.. +.+..++..+-.+|...+ .+++|...|++..+.. +.+..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence 345566888888888887765 556667777776666433 3456666666665543 2344555555555
Q ss_pred HHh
Q 042546 488 HCV 490 (671)
Q Consensus 488 ~~~ 490 (671)
|..
T Consensus 85 y~~ 87 (145)
T d1zu2a1 85 YTS 87 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.05 E-value=0.00094 Score=67.59 Aligned_cols=106 Identities=13% Similarity=-0.000 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-H---HHHHH
Q 042546 517 IDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGFPPFVD-P---FIKYV 592 (671)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-t---~~~~l 592 (671)
+..+-..+.+.|+.++|...+...... .| ..++..+-..+...|++++|.+.|++..+ +.|+.. . +...+
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILA 196 (497)
T ss_dssp --------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHH
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHH
Confidence 334444444555555555444433321 01 12344444445555555555555555543 233331 1 12333
Q ss_pred HhcCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 042546 593 SKSGTSDDAIAFLKGMTSKRFPSMSVVLCLFAAFFQ 628 (671)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~p~~~~~~~l~~~~~~ 628 (671)
...|+..+|...|.+.....+|-...+..|...|.+
T Consensus 197 ~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 445555555555555555444555555555555444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.01 E-value=0.003 Score=63.75 Aligned_cols=114 Identities=7% Similarity=-0.105 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 042546 408 DAMLNSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKG 487 (671)
Q Consensus 408 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 487 (671)
...+..+-..+.+.|+.++|...+....+.. ...++..+...+...|++++|...|++..+.. +-+...|+.+...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 3455666667777777777777666554321 12456667777888888888888888877653 2344678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhc
Q 042546 488 HCVAGDLDKAADCFQKMVEKEGTSHAGYAIDLLVNTYCSK 527 (671)
Q Consensus 488 ~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~li~~~~~~ 527 (671)
+...|+..+|...|.+... . -.|-..++..|...+.+.
T Consensus 196 ~~~~~~~~~A~~~y~ral~-~-~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIA-V-KFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHS-S-SBCCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHh-C-CCCCHHHHHHHHHHHHHh
Confidence 8888888888888887765 2 245566677777666543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.77 E-value=0.0086 Score=54.16 Aligned_cols=121 Identities=11% Similarity=0.048 Sum_probs=75.2
Q ss_pred HhCCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 042546 347 SERNMVKEAVDLYEFAMACKNKPSVNCCTFLLRKIVVSKQLDMRLFSKVVRVFRENGNVLTDAMLNSVLKALISVGRMGE 426 (671)
Q Consensus 347 ~~~g~~~~a~~l~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 426 (671)
.+.|++++|+..+++.++. .+.|...+..+...|+..|++++
T Consensus 7 L~~G~l~eAl~~l~~al~~--------------------------------------~P~d~~ar~~La~lL~~~G~~e~ 48 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--------------------------------------SPKDASLRSSFIELLCIDGDFER 48 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--------------------------------------CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHCCCHHHHHHHHHHHHHH--------------------------------------CCCCHHHHHHHHHHHHHCCCHHH
Confidence 4678999999999988753 23445668889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 427 CNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVAGDLDKAADCFQKMVE 506 (671)
Q Consensus 427 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 506 (671)
|.+.|+...+.. +-+...+..+...+...+..+++..-...-...+-.++...+......+...|+.++|.+.+++..+
T Consensus 49 A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 49 ADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp HHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 999999998764 2234444444444433333322221111100111112223344445567778888888888888766
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.68 E-value=0.058 Score=43.99 Aligned_cols=63 Identities=8% Similarity=-0.108 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVRE----YDLKPW-----HTTYEELIKNLLVQRGFKDALSLLCLMK 577 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 577 (671)
..|+.+-.+|.+.|++++|...+++...- ....++ ...|+.+-.+|...|++++|++.|++..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666677777766666655421 011121 1134555666777777777777777654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.60 E-value=0.035 Score=44.70 Aligned_cols=96 Identities=14% Similarity=0.012 Sum_probs=56.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC-CHHHHHHHH
Q 042546 453 LSSAGKKDEANEFMDHMEASGSDVGDKMWVSLIKGHCVA----------GDLDKAADCFQKMVEKEGTSH-AGYAIDLLV 521 (671)
Q Consensus 453 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~g~~p-~~~~~~~li 521 (671)
|-+.+.+++|.+.|+...+.. +.+..++..+-.+|... +.+++|.+.|++..+ +.| +..+|..+-
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhHH
Confidence 445667889999999887764 34566677666666543 345667777777765 223 345566566
Q ss_pred HHHHhcCC-----------HHHHHHHHHHHHHhCCCCCCHHHHHH
Q 042546 522 NTYCSKNR-----------AIDACKFVHNCVREYDLKPWHTTYEE 555 (671)
Q Consensus 522 ~~~~~~g~-----------~~~A~~~~~~m~~~~~~~p~~~~~~~ 555 (671)
.+|...|+ +++|.+.|+...+ +.|+...|..
T Consensus 83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~---l~P~~~~~~~ 124 (145)
T d1zu2a1 83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLK 124 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHH
T ss_pred HHHHHcccchhhHHHHHHhHHHhhhhhhcccc---cCCCHHHHHH
Confidence 66554432 3445555555543 3455444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.26 E-value=0.18 Score=40.89 Aligned_cols=91 Identities=15% Similarity=0.016 Sum_probs=52.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCC---
Q 042546 452 RLSSAGKKDEANEFMDHMEASGS-DV----------GDKMWVSLIKGHCVAGDLDKAADCFQKMVEK----EGTSHA--- 513 (671)
Q Consensus 452 ~~~~~g~~~~A~~~~~~m~~~g~-~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~g~~p~--- 513 (671)
.+.+.|++++|++.|++..+... .| ...+|+.+..+|.+.|++++|.+.+++..+. ....++
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 34445666666666665543110 11 1245666666777777777777666665430 111221
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 042546 514 --GYAIDLLVNTYCSKNRAIDACKFVHNCVR 542 (671)
Q Consensus 514 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (671)
...++.+-.+|...|++++|...|++..+
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12455567778888888888888887553
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.07 E-value=0.029 Score=41.28 Aligned_cols=63 Identities=14% Similarity=0.011 Sum_probs=38.4
Q ss_pred HHHhcCChHHHHHHHHHhhhC---C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHH
Q 042546 591 YVSKSGTSDDAIAFLKGMTSK---R---FP-SMSVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVL 653 (671)
Q Consensus 591 ~l~~~g~~~~A~~~~~~m~~~---~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 653 (671)
.+.+.|++++|+..|++..+. . .+ ...++..+..+|.+.|++++|.+.+++..+.-++++++.
T Consensus 14 ~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 344556666666666555431 1 11 245677777777778888888877777766555555554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.52 E-value=1.1 Score=33.73 Aligned_cols=65 Identities=9% Similarity=0.025 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 042546 515 YAIDLLVNTYCSKNRAIDACKFVHNCVREYDLKPWHTTYEELIKNLLVQRGFKDALSLLCLMKDHGF 581 (671)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 581 (671)
..++.-++...+.|+-|.-.+++..+.+ +-+|+....-.+..+|.+.|...++-+++.+.-+.|+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~k--n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3445555566666666666666666543 3345555556666666666666666666666666554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.49 Score=34.21 Aligned_cols=62 Identities=6% Similarity=-0.041 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 411 LNSVLKALISVGRMGECNKILKAMEEGG-----FIAS-SNMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 411 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
+-.+-..+.+.|++++|...|++..+.. ..++ ..+++.+..+|.+.|++++|.+.+++..+.
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 4456677788889999988888776421 1122 457788888888888888888888888775
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.77 E-value=1.4 Score=33.05 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 042546 412 NSVLKALISVGRMGECNKILKAMEEGGFIASSNMKSKIAFRLSSAGKKDEANEFMDHMEASG 473 (671)
Q Consensus 412 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 473 (671)
+..++...+.|+-+.-.++++.+.+.+ ++++...-.+..+|.+.|...++-+++.+.-+.|
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333444445555555555555544433 4444445555555555555555555555554444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=89.42 E-value=3.5 Score=31.49 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=46.1
Q ss_pred CChHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CC
Q 042546 279 DEPKKALIFFRWAEESGFVKHDESSYNAMASVLGR----EDCIDRFWKVLDEMRSKGYEMEMETCVKVLGRFSE----RN 350 (671)
Q Consensus 279 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g 350 (671)
.+.++|.+.|++..+ .-+..++..|-..|.. ..+.++|.++|++..+.| +......|-..|.. ..
T Consensus 37 ~~~~~a~~~~~~aa~----~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 37 INKQKLFQYLSKACE----LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp SCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred cCHHHHHHHHhhhhc----ccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 455566666666554 2344444444444433 345677777777777765 44445555444443 34
Q ss_pred ChHHHHHHHHHHHhCC
Q 042546 351 MVKEAVDLYEFAMACK 366 (671)
Q Consensus 351 ~~~~a~~l~~~m~~~g 366 (671)
+.++|.++|+...+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 6777777777766544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.13 E-value=1 Score=34.12 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=50.9
Q ss_pred HHHHHHhc---CChHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhchHhhhccHHHHHHHHh
Q 042546 588 FIKYVSKS---GTSDDAIAFLKGMTSKRFPSM-SVVLCLFAAFFQARRHSEAQDLLSKCPRYVRNHADVLNLLYS 658 (671)
Q Consensus 588 ~~~~l~~~---g~~~~A~~~~~~m~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~ 658 (671)
|..++.+. .++++|+.+|+++.+..+.+. ..+-.|.-+|.+.|++++|.+.+++..+.-+.+..+..+-..
T Consensus 41 YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~ 115 (124)
T d2pqrb1 41 YAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 115 (124)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence 45555554 446678888888887655443 566678888999999999999999988766666666555443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=87.33 E-value=4.8 Score=30.61 Aligned_cols=15 Identities=13% Similarity=-0.113 Sum_probs=7.0
Q ss_pred CHHHHHHHHHHHHhC
Q 042546 565 GFKDALSLLCLMKDH 579 (671)
Q Consensus 565 ~~~~A~~l~~~m~~~ 579 (671)
+.++|.++|++..+.
T Consensus 110 d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 110 NEKQAVKTFEKACRL 124 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 444455544444443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.08 E-value=7.3 Score=29.14 Aligned_cols=66 Identities=14% Similarity=0.013 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 042546 406 LTDAMLNSVLKALISVG---RMGECNKILKAMEEGGFIASS-NMKSKIAFRLSSAGKKDEANEFMDHMEAS 472 (671)
Q Consensus 406 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 472 (671)
++..+--...-++++.. +++++..+|++..+.+ +.+. ..+--|.-+|.+.|++++|.+.++.+.+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 33333333444444443 4567777777777543 2232 35555666777888888888888877765
|