Citrus Sinensis ID: 042553

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130-

MQALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLARVISSSLNNGTELSFSEIETKISYIGLDGLFISYYVDGNQTLALYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH

ccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHcccccccccccHHHHHHHcEEEEEEccEEEEEEEEccEEEEEEEccccccccccccccccccEEEEccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccEEcccccccccccEEEcccHHHHHHHHHcccccccEEEEEEccccEEEEccccccEEEEcccccHHHHHcHHHHHHHccccccccccccccccccccccEEEEcccccccccEEEEEEEcccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccEEEccHHHHHHHHHHHHHccccccccEEEEEEEEEcccccccccccccccccccccHHHHHccccccccHHHHcccccccccEEEEEEEEEccccccccHHHHHcccccccccccccccccHHHHHHHHHHcccEEEEEEEcccccccEEEEEEEccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccEEccccccccHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccEEEEEEccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHcccccccccccccccccEEEEEcccccccHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHHHccccccccccccHHHHHHHHHHHc

ccHHHHHccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccEEEEEcccEEEEEccccccEEEEccccccccccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHcccccccEcccccccccccEEEEEEEccccEEEEEccHHHHHHHHHHHHcHccccEEEEEEcccEEEEEccccccEEEcccccEEEEEEcccccccccccHHHHcccccccEEEEcccEEEEEcHEEEHccccEEEEEEEcHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccEEEccHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccccccccccccccccccccHHHccccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccEEEEEEccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccHcccccccEEEEEEccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHccEEEEEcccccccHHHHHHHHHccccccccccccEEEEEcccHHHHHHHHcccHEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccccccccEEEccccccccccEEcccccccHcHHHHHHHHHcccEEEEEEcccccccccEEEEEEEccccccccccccccccccccccHHccccccccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHcccccHHHcccccccccEEEEEcccccccHHHHHHHHHHcccccccccEEEEEEccccccHHHHHHHccccHHccccccHHHHHHHHHHcc

MQALSVlllpaslipYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLARVISSslnngtelsfsEIETKISYIGLDGLFISYYVdgnqtlalysnssfspnpngfpiakgkytwykqpvdrdtgklygeaivtkpssvstSTWFLKALnstdglgslgtgwskARDALFLNtagingtrgavslgfpvkpitnlfaginlyggrlsiatndgkvlvqgipntrmtivndsISFQLITNTKTraqqmnpvknvsctsgngtlsiGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCyveagpgseletNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEvvldpsdgsvlkfskvkgdrVKLKQILSNLLSNAVKFTSEGHISVRAcvkkpsaignpslsssrhgfLQSISCLfyknkkargdlEAVNAAQrdenameftfevddtgkgipkekrKTVFENYVQVkegeggtglgLGIVQSLVRLMggdieivdkengergtcfRFNVFLAIREAsandnntqgekelaggdsaagdtqlqhmnltvkapspslsirtnsprlnilspgsrhegsHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLkskfgsihsphsslgksdlssrsdsesasfkevplsamegtehklqgykrrgapSFILLVIDATAGPFLELFNIVAEFRRDLQcnckvvwldkptsrsinfdgledetmdpnddvllkpfhgsrlYKVIKLLpefggvqskrhgkasrdagsssyskhpyrtgksrskagrheiqeegssssehsrrdimpNASVLLktgnssgegprrdimpnASVLLKtgnssgegssrykqteieeedgersqaqkplrgkkilvadDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGlndqrdlgaphilpydyilmdcempimnGYEATRKIREEEKRNQVHIPIIALtahisgeeadkTIEAGmdvhlgkplnRDHLMEAIKYLH

MQALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLARVISSSlnngtelsfSEIETKISYIGLDGLFISYYVDGNQTLALYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVtkpssvstsTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEvvldpsdgsvlkfskvkgdrvKLKQILSNLLSNAVKFTSEGHISVRACVKKPsaignpslsssrHGFLQSISCLFYKNKKARGDLEAVNaaqrdenameftfevddtgkgipkekrktVFENYVQVkegeggtglglGIVQSLVRLMGGDIeivdkengergTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLtvkapspslsirtnsPRLNilspgsrhegsHVVLLIANEERRRIAQKFMEnlginvsavsRWERLHSTLKRlkskfgsihsphsslgksdlssrsdsesasfkevplsamegteHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCkvvwldkptsrsinfdgledetmdpnDDVLLKPFHGSRLYKVIKLLPEfggvqskrhgkasrdagsssyskhpyrtgksrskagrheiqeegssssehsrrdIMPNASVLLKtgnssgegprrdIMPNASVLLktgnssgegssrykqteieeedgersqaqkplrgkkilvaddsMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH

MQALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLARVISSSLNNGTELSFSEIETKISYIGLDGLFISYYVDGNQTLALYsnssfspnpngfpIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKegeggtglglgIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHsphsslgksdlssrsdsesasFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQeegssssehsRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH

***LSVLLLPASLIPYWYKMTKHIEEDVAL*************ESIATLLHPISSSATNLARVISSSLNNGTELSFSEIETKISYIGLDGLFISYYVDGNQTLALYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIK*****************AFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKK*************HGFLQSISCLFYKNKKAR*****************FTFEV************KTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR**************************************************************HVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTL****************************************************RRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGL********DDVLLKPFHGSRLYKVIKLLPEFGG**********************************************************************************************************************ILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEA*KTIEAGMDVHL*****************

*QALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLARVISSSLNNGTELSFSEIETKISYIGLDGLFISYYVDGNQTLALYSNSSF*********AKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP******************ISCLFYKN**************RDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR*******************************************************GSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLSAME***************SFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSRRDI***********************************SGEGSSRY**********************KILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH

MQALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLARVISSSLNNGTELSFSEIETKISYIGLDGLFISYYVDGNQTLALYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQME*********MNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFG***************************VPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGV************************************************RDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTG****************************LRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH

MQALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLARVISSSLNNGTELSFSEIETKISYIGLDGLFISYYVDGNQTLALYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTDGLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDGKVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKP*****************SISCL*YK*****************ENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEGEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIR**********************************************S**LNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHSSLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTG***************************PLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQ*****PHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYLH

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SSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1131	2.2.26 [Sep-21-2011]
O22267		1122	Histidine kinase CKI1 OS=	yes	no	0.930	0.937	0.421	0.0
Q9SXL4		1207	Histidine kinase 1 OS=Ara	no	no	0.632	0.592	0.282	3e-74
P0C0F6		726	Sensory/regulatory protei	yes	no	0.213	0.331	0.31	2e-25
P0C0F7		726	Sensory/regulatory protei	yes	no	0.213	0.331	0.31	2e-25
Q9C5U0		1080	Histidine kinase 4 OS=Ara	no	no	0.281	0.294	0.279	2e-25
Q9C5U1		1036	Histidine kinase 3 OS=Ara	no	no	0.296	0.323	0.285	1e-24
O14002		2310	Peroxide stress-activated	yes	no	0.219	0.107	0.302	3e-24
Q54YZ9		2062	Hybrid signal transductio	yes	no	0.212	0.116	0.318	1e-23
Q869S5		1671	Hybrid signal transductio	no	no	0.244	0.165	0.283	2e-23
Q8D5Z6		857	Autoinducer 2 sensor kina	no	no	0.187	0.247	0.305	2e-23

>sp\|O22267\|CKI1_ARATH Histidine kinase CKI1 OS=Arabidopsis thaliana GN=CKI1 PE=1 SV=1	Back alignment and function desciption

 Score =  802 bits (2071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/1155 (42%), Positives = 688/1155 (59%), Gaps = 103/1155 (8%)

Query: 3    ALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISS-SATNLA 61
            A  V++     I  W   T+++ ++VA  +  L +++ S+IE+I    +  ++ S   LA
Sbjct: 21   AFLVVVFECIWISNWRTTTENLVKEVASFTEDLRTSLVSEIENIGKFTYAKTNLSTIGLA 80

Query: 62   RVISSSLNNGTELSFSEIETKI-----------------SYIGLDGLFISYYVDGNQTLA 104
            RVI S + N  +  F+EI+T+I                 SYI  DGL  SY  + N ++A
Sbjct: 81   RVIDSYITN-NDTGFTEIQTQIAPLLFVAYSTILQVSQVSYISRDGLMFSYIAESNTSVA 139

Query: 105  LYSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNST 164
            +++NSS +        ++G YTWY Q VD+ TG+L G +  ++   V+ + WF  A ++ 
Sbjct: 140  VFANSSSNS-------SRGDYTWYTQTVDQLTGRLNGNSTKSQSLDVTHTDWFQAAQSNN 192

Query: 165  DGLGSLGTGWS-KARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATN 223
                 +GT    +  + L  +   +   +G VSLGFPVK +T +   +NL+G  L + T 
Sbjct: 193  YTTAFVGTSLGGEDNETLIQSVVSLYSKKGLVSLGFPVKTLTEVLNSLNLHGEELYMWTK 252

Query: 224  DGKVLV-QGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYK 282
            DG VLV +G  N    I N SI F   +N+     Q  P    +C+S    + I ++ Y+
Sbjct: 253  DGTVLVREGSLNDSFFISNGSICFGRESNS--LWSQCIPE---NCSSSGYEVEIKRLRYQ 307

Query: 283  AYCSQFEVAGVKSVYALAMPRKGLVSLV-HRTSKRALILLIVMTVGVLISMLTFVFKSAR 341
            A+CS  EV+GV   Y L  P KG  + + H+  K    L++VM        + FV+   +
Sbjct: 308  AFCSVIEVSGVPLRYTLMFPNKGGATRIKHQAEKAKYQLIVVMIFLGFGWPVWFVWFMMQ 367

Query: 342  AARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
            A R+EMH+ A+LI QMEATQQAERKSMNKS AFANASHDIR ALAG+ GLI++C     P
Sbjct: 368  ATRREMHMRATLINQMEATQQAERKSMNKSQAFANASHDIRGALAGMKGLIDICRDGVKP 427

Query: 402  GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
            GS+++T L Q+NVCA DL+ LLNS+LD SK+E+GKMQL+EEDF++ +LLEDV+D +HPVA
Sbjct: 428  GSDVDTTLNQVNVCAKDLVALLNSVLDMSKIESGKMQLVEEDFNLSKLLEDVIDFYHPVA 487

Query: 462  MRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
            M+KGV+VVLDP DGSV KFS V+GD  +LKQIL+NL+SNAVKFT +GHI+VRA  ++P +
Sbjct: 488  MKKGVDVVLDPHDGSVFKFSNVRGDSGRLKQILNNLVSNAVKFTVDGHIAVRAWAQRPGS 547

Query: 522  IGNPSLSSSRHGFLQSISCLFYKNKKARG--DLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
              +  L+S   G  + +  +F KNK+     + E  N+ + + N MEF FEVDDTGKGIP
Sbjct: 548  NSSVVLASYPKGVSKFVKSMFCKNKEESSTYETEISNSIRNNANTMEFVFEVDDTGKGIP 607

Query: 580  KEKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
             E RK+VFENYVQV+E   G  GTGLGLGIVQSLVRLMGG+I I DK  GE+GTCF+FNV
Sbjct: 608  MEMRKSVFENYVQVRETAQGHQGTGLGLGIVQSLVRLMGGEIRITDKAMGEKGTCFQFNV 667

Query: 637  FLAIREA-SANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAP-SPSLSIRTNSPRL-NI 693
             L   E+   +D   + E E AGGD  +      ++ LT+      S++IR  SPR  N 
Sbjct: 668  LLTTLESPPVSDMKVRQEIE-AGGDYVS----TPNLGLTINTSLGGSMNIRNLSPRFNNC 722

Query: 694  LSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIH 753
            LS   + EGS VVLL+ NEERRR+ +K+++NLGI V+ V +WE L   L+RL   FG   
Sbjct: 723  LSSSPKQEGSRVVLLLKNEERRRVTEKYIKNLGIKVTVVEKWEHLSYALERL---FG--F 777

Query: 754  SPHSSLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGA--PSFILLVIDATAG 811
            SP SS+G+++ S    S     +E+P   M+G + + Q  KRR     + +LLVIDA  G
Sbjct: 778  SPQSSMGRAECSLSCPSS----RELPFIGMDGIDSRSQLPKRRSISFSAVVLLVIDAKTG 833

Query: 812  PFLELFNIVAEFRRDLQ--CNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSR 869
            PF EL +IV +FRR L    +CKVVWL++ ++R            +  D    +P HGSR
Sbjct: 834  PFFELCDIVKQFRRGLPHGISCKVVWLNESSTR----------VSERGDISCSRPLHGSR 883

Query: 870  LYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEH 929
            L +V+K+LPEFGG   K   +   +    S  +H +   +S     +H++QEEG SS  +
Sbjct: 884  LMEVLKMLPEFGGTVLK---EPPTELQRESLLRHSFVAERS----PKHKVQEEGPSSMFN 936

Query: 930  SR--RDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDG 987
             +  + IM +     +T   S    R+ I          GN              +E++ 
Sbjct: 937  KKLGKRIMASTDSESETRVKSVRTGRKPI----------GNPE------------DEQET 974

Query: 988  ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGAT-VEACENGEAALQLVRSGLNDQR 1046
             +    + LRGK++LV DD+ + R+VA   L+ +G + VE C++G+ AL+LV  GL  + 
Sbjct: 975  SKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQRE 1034

Query: 1047 DLGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISG-EEADKT 1105
            + G+   LP+DYI MDC+MP M+GYEATR+IR+ EK   V  PIIA++ H  G EEA +T
Sbjct: 1035 EQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARET 1094

Query: 1106 IEAGMDVHLGKPLNR 1120
            I+AGMD  L K LN+
Sbjct: 1095 IQAGMDAFLDKSLNQ 1109

Essential protein. Functions as a histidine kinase and transmits the stress signal to a downstream MAPK cascade. This protein undergoes an ATP-dependent autophosphorylation at a conserved histidine residue in the kinase core, and a phosphoryl group is then transferred to a conserved aspartate residue in the receiver domain. Required for the development of megagametophyte in female gametophyte (embryo sac) independently of cytokinin. Contributes to vascular bundle formation and secondary growth in a cytokinin-independent manner, probably by promoting the maintenance of mitotic activity and/or identity of procambial cells. Seems to influence and promote the cytokinin signaling pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 3EC: .EC: 3

>sp\|Q9SXL4\|AHK1_ARATH Histidine kinase 1 OS=Arabidopsis thaliana GN=AHK1 PE=1 SV=2	Back alignment and function description

>sp\|P0C0F6\|RPFC_XANCP Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=rpfC PE=1 SV=2	Back alignment and function description

>sp\|P0C0F7\|RPFC_XANC8 Sensory/regulatory protein RpfC OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rpfC PE=3 SV=2	Back alignment and function description

>sp\|Q9C5U0\|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1	Back alignment and function description

>sp\|Q9C5U1\|AHK3_ARATH Histidine kinase 3 OS=Arabidopsis thaliana GN=AHK3 PE=1 SV=1	Back alignment and function description

>sp\|O14002\|MAK2_SCHPO Peroxide stress-activated histidine kinase mak2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mak2 PE=3 SV=1	Back alignment and function description

>sp\|Q54YZ9\|DHKJ_DICDI Hybrid signal transduction histidine kinase J OS=Dictyostelium discoideum GN=dhkJ PE=3 SV=2	Back alignment and function description

>sp\|Q869S5\|DOKA_DICDI Hybrid signal transduction protein dokA OS=Dictyostelium discoideum GN=dokA PE=1 SV=1	Back alignment and function description

>sp\|Q8D5Z6\|LUXQ_VIBVU Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio vulnificus (strain CMCP6) GN=luxQ PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1131
224130996		1130	predicted protein [Populus trichocarpa]	0.944	0.945	0.532	0.0
224102477		1136	predicted protein [Populus trichocarpa]	0.937	0.933	0.519	0.0
224104183		1119	predicted protein [Populus trichocarpa]	0.933	0.943	0.512	0.0
255548469		1138	histidine kinase 1 plant, putative [Rici	0.933	0.927	0.512	0.0
225437547		1110	PREDICTED: histidine kinase CKI1-like [V	0.922	0.939	0.518	0.0
356503926		1056	PREDICTED: histidine kinase CKI1-like [G	0.906	0.970	0.481	0.0
449454135		1038	PREDICTED: histidine kinase CKI1-like [C	0.882	0.961	0.478	0.0
147861778		1143	hypothetical protein VITISV_032223 [Viti	0.804	0.796	0.532	0.0
449490917		1001	PREDICTED: LOW QUALITY PROTEIN: histidin	0.829	0.937	0.481	0.0
15226594		1122	histidine kinase CKI1 [Arabidopsis thali	0.930	0.937	0.421	0.0

>gi\|224130996\|ref\|XP_002320976.1\| predicted protein [Populus trichocarpa] gi\|222861749\|gb\|EEE99291.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1097 bits (2838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1161 (53%), Positives = 790/1161 (68%), Gaps = 93/1161 (8%)

Query: 3    ALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSATNLAR 62
             + VLLLP  ++P+WY M KH+++ +  +++ + S + S+IE+IA  LHPI+SSA NLA+
Sbjct: 19   VIGVLLLPCVVVPWWYNMIKHMKKHMDFNAHVVQSGLLSEIENIAKYLHPINSSAINLAK 78

Query: 63   VISSSLNNGTELSFSEIETK-----------------ISYIGLDGLFISYYVDGNQTLAL 105
            V+SSS+N G++LS  ++E K                 ISYIGL GLF SYY +GNQT A+
Sbjct: 79   VMSSSIN-GSKLSSYDVENKVAPSLFQAFSIIPFISQISYIGLGGLFFSYYYEGNQTFAM 137

Query: 106  YSNSSFSPNPNGFPIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNSTD 165
            YSNS+ S   N        ++WY+QPVD DTG++YG+A+ + P   + ++W  +ALNS+ 
Sbjct: 138  YSNSTASNERN--------FSWYRQPVDSDTGRVYGDAVKSLPFIKTNASWIEQALNSSQ 189

Query: 166  GLGSLGTGWSKARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATNDG 225
            G  S  +GW+ A+D LFLNT  + G +GA+SLGF  K +T+    + LYGG L +AT  G
Sbjct: 190  GYASFESGWNDAQDPLFLNTVSLRG-QGALSLGFSAKALTSFLNNVELYGGSLYLATQSG 248

Query: 226  KVLVQGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLS-----IGKIH 280
            KVLV G+PNT+  I  +S+S  +   TK    Q++ V NVSC   NG L      +G+  
Sbjct: 249  KVLVGGLPNTQTVIKENSVSLYM---TKLNGDQIDHVGNVSCMPNNGKLEDSVLYLGEAK 305

Query: 281  YKAYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSA 340
            Y+ +CS+ E+ GV+SVYALA P  GL S V+R+ K +LIL I+M   + IS+++F+    
Sbjct: 306  YRVFCSRVEIVGVQSVYALAFPYNGLASSVNRSIKISLILFIIMIAAIFISIVSFILLVV 365

Query: 341  RAARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAG 400
            R+AR+EMHLC++LIKQMEATQQAERKSMNKSLAFA ASHDIRAALAGITGLIE+CY E  
Sbjct: 366  RSARREMHLCSTLIKQMEATQQAERKSMNKSLAFATASHDIRAALAGITGLIEICYAEVR 425

Query: 401  PGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPV 460
             GSEL+TNLRQM+ C  DL+GLLNSILDTSK+EAGKMQL EE+FD+ +LLED VDL+HPV
Sbjct: 426  AGSELDTNLRQMDGCTKDLVGLLNSILDTSKIEAGKMQLEEEEFDLAKLLEDAVDLYHPV 485

Query: 461  AMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPS 520
             M+KGV+VVLDP DGS+LK S+VKGDR KLKQ+L NLLSNAVKFT EGH+SVRA  +KPS
Sbjct: 486  GMKKGVDVVLDPYDGSILKHSRVKGDRGKLKQVLCNLLSNAVKFTFEGHVSVRAWTQKPS 545

Query: 521  AIGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPK 580
             + N  ++S+++G  +  SCLF KNKK        NA +  +++MEF FEV+DTGKGIPK
Sbjct: 546  -LENKIMASNQNGLWRCFSCLFSKNKKE------FNAMKPKQSSMEFVFEVNDTGKGIPK 598

Query: 581  EKRKTVFENYVQVKE---GEGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVF 637
            EK+K+VFEN+VQVKE   G+GGTGLGLGIVQSLVRLMGG+I IV+KENGE+GTCF+FNVF
Sbjct: 599  EKQKSVFENFVQVKETALGQGGTGLGLGIVQSLVRLMGGEIGIVNKENGEKGTCFKFNVF 658

Query: 638  LAIREASANDN-NTQGEKELAGGDSAAGDTQLQHMNLTVKAPSPSLSIRTNSPRLNILSP 696
            L I E S+ DN N + E E   GDS  G     +  LT++ PSP L IRT SPRL+IL  
Sbjct: 659  LDICEISSTDNKNAEVEIE---GDSMPGGEH-NYSELTIRTPSPGLVIRTPSPRLSILGS 714

Query: 697  GSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPH 756
              + EGSHVVLLI NEER R +QK++E LGI VS+V  WE LHSTLKR+K++     SPH
Sbjct: 715  SPKIEGSHVVLLIQNEERLRSSQKYIEGLGIKVSSVKEWEHLHSTLKRIKARQNV--SPH 772

Query: 757  SSLGKSDLSSRSDS-ESASFKEVPLSAMEGTEHKLQGY---KRRGAPSFILLVIDATAGP 812
            SS GKSDL SRSD   S S K+VPLS+M+G + K         RGAP F+LLVIDA AGP
Sbjct: 773  SSSGKSDLGSRSDHFNSRSMKDVPLSSMDGIDQKPSASGSSNLRGAPGFVLLVIDAGAGP 832

Query: 813  FLELFNIVAEFRRDLQCNC-KVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLY 871
            F EL  +VAEF+RDL  +C KVVWLDKPTSRSIN    E + +DP DD+LLKPFHGSRLY
Sbjct: 833  FQELCRVVAEFKRDLHSSCCKVVWLDKPTSRSINLRSFEQDLIDPRDDILLKPFHGSRLY 892

Query: 872  KVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRHEIQEEGSSSSEHSR 931
            +VI+LLPEFGG     H   SR             + +  +    + +++ GSSSS HS+
Sbjct: 893  QVIRLLPEFGG-----HELISR-------------SKRENAIQATNALKDPGSSSSTHSQ 934

Query: 932  RDIMPNASVL---LKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGS-SRYKQTEIEEEDG 987
            +  +   S      +  +S  EG  ++     + LL   + S   S SR+K         
Sbjct: 935  KTKLKVPSTCENSFQQVDSQAEGSSKNEKNRKNPLLDDPDHSHVRSKSRHKG-------- 986

Query: 988  ERSQAQKPLRGKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRD 1047
                  K L G K LVADD+ + RRV    L+  GATVE CENGE A QLVR GL++QR+
Sbjct: 987  ------KSLSGLKFLVADDNEISRRVTRHILKGHGATVEVCENGEEAFQLVRIGLHNQRE 1040

Query: 1048 LGAPHILPYDYILMDCEMPIMNGYEATRKIREEEKRNQVHIPIIALTAHISGEEADKTIE 1107
                 +LPYDYILMDCEMP M+G EATR+IR+EEK   VHIPI+A +A  SG E  K  E
Sbjct: 1041 HSHSIVLPYDYILMDCEMPKMDGCEATRQIRKEEKFYGVHIPILAFSADNSGGEGKKMEE 1100

Query: 1108 AGMDVHLGKPLNRDHLMEAIK 1128
            AG D  + K +N + L E I+
Sbjct: 1101 AGTDGRVNKKINMEQLEETIR 1121

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224102477\|ref\|XP_002312692.1\| predicted protein [Populus trichocarpa] gi\|222852512\|gb\|EEE90059.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224104183\|ref\|XP_002333975.1\| predicted protein [Populus trichocarpa] gi\|222839404\|gb\|EEE77741.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255548469\|ref\|XP_002515291.1\| histidine kinase 1 plant, putative [Ricinus communis] gi\|223545771\|gb\|EEF47275.1\| histidine kinase 1 plant, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225437547\|ref\|XP_002270319.1\| PREDICTED: histidine kinase CKI1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356503926\|ref\|XP_003520750.1\| PREDICTED: histidine kinase CKI1-like [Glycine max]	Back alignment and taxonomy information

>gi\|449454135\|ref\|XP_004144811.1\| PREDICTED: histidine kinase CKI1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147861778\|emb\|CAN78916.1\| hypothetical protein VITISV_032223 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449490917\|ref\|XP_004158748.1\| PREDICTED: LOW QUALITY PROTEIN: histidine kinase CKI1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|15226594|ref|NP_182265.1| histidine kinase CKI1 [Arabidopsis thaliana] gi|75097398|sp|O22267.1|CKI1_ARATH RecName: Full=Histidine kinase CKI1; AltName: Full=Protein CYTOKININ-INDEPENDENT 1 gi|1679803|dbj|BAA13416.1| histidine kinase homolog [Arabidopsis thaliana] gi|2529684|gb|AAC62867.1| putative histidine kinase [Arabidopsis thaliana] gi|330255746|gb|AEC10840.1| histidine kinase CKI1 [Arabidopsis thaliana]

Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1131
TAIR\|locus:2061971		1122	CKI1 "CYTOKININ-INDEPENDENT 1"	0.748	0.754	0.418	7.7e-196
TAIR\|locus:2827836		1207	HK1 "histidine kinase 1" [Arab	0.449	0.420	0.289	1.2e-61
TIGR_CMR\|GSU_0718		589	GSU_0718 "sensory box histidin	0.162	0.312	0.345	6.9e-34
TAIR\|locus:2059718		1080	WOL "WOODEN LEG" [Arabidopsis	0.183	0.192	0.313	9.5e-34
TIGR_CMR\|CBU_1084		683	CBU_1084 "sensory box sensor h	0.138	0.229	0.345	2.1e-32
TIGR_CMR\|SO_0859		1765	SO_0859 "sensory box histidine	0.150	0.096	0.314	9.2e-32
TIGR_CMR\|SPO_0132		739	SPO_0132 "sensor histidine kin	0.133	0.204	0.348	3.5e-31
TIGR_CMR\|GSU_1265		445	GSU_1265 "sensor histidine kin	0.112	0.285	0.36	1.5e-30
TAIR\|locus:2177261		1176	HK2 "histidine kinase 2" [Arab	0.282	0.272	0.282	1e-29
TIGR_CMR\|CBU_0789		831	CBU_0789 "sensory box histidin	0.137	0.186	0.339	1.6e-29

TAIR\|locus:2061971 CKI1 "CYTOKININ-INDEPENDENT 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1599 (567.9 bits), Expect = 7.7e-196, Sum P(2) = 7.7e-196
 Identities = 384/917 (41%), Positives = 539/917 (58%)

Query:     3 ALSVLLLPASLIPYWYKMTKHIEEDVALSSNQLHSAMQSQIESIATLLHPISSSAT-NLA 61
             A  V++     I  W   T+++ ++VA  +  L +++ S+IE+I    +  ++ +T  LA
Sbjct:    21 AFLVVVFECIWISNWRTTTENLVKEVASFTEDLRTSLVSEIENIGKFTYAKTNLSTIGLA 80

Query:    62 RVISSSLNNGTELSFSEIETKI-----------------SYIGLDGLFISYYVDGNQTLA 104
             RVI S + N  +  F+EI+T+I                 SYI  DGL  SY  + N ++A
Sbjct:    81 RVIDSYITNN-DTGFTEIQTQIAPLLFVAYSTILQVSQVSYISRDGLMFSYIAESNTSVA 139

Query:   105 LYXXXXXXXXXXXXXIAKGKYTWYKQPVDRDTGKLYGEAIVTKPSSVSTSTWFLKALNST 164
             ++              ++G YTWY Q VD+ TG+L G +  ++   V+ + WF  A ++ 
Sbjct:   140 VFANSSSNS-------SRGDYTWYTQTVDQLTGRLNGNSTKSQSLDVTHTDWFQAAQSNN 192

Query:   165 DGLGSLGTGWS-KARDALFLNTAGINGTRGAVSLGFPVKPITNLFAGINLYGGRLSIATN 223
                  +GT    +  + L  +   +   +G VSLGFPVK +T +   +NL+G  L + T 
Sbjct:   193 YTTAFVGTSLGGEDNETLIQSVVSLYSKKGLVSLGFPVKTLTEVLNSLNLHGEELYMWTK 252

Query:   224 DGKVLV-QGIPNTRMTIVNDSISFQLITNTKTRAQQMNPVKNVSCTSGNGTLSIGKIHYK 282
             DG VLV +G  N    I N SI F   +N+     Q  P +N  C+S    + I ++ Y+
Sbjct:   253 DGTVLVREGSLNDSFFISNGSICFGRESNSLW--SQCIP-EN--CSSSGYEVEIKRLRYQ 307

Query:   283 AYCSQFEVAGVKSVYALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISM-LTFVFKSAR 341
             A+CS  EV+GV   Y L  P KG  + +   +++A   LIV+ + +     + FV+   +
Sbjct:   308 AFCSVIEVSGVPLRYTLMFPNKGGATRIKHQAEKAKYQLIVVMIFLGFGWPVWFVWFMMQ 367

Query:   342 AARKEMHLCASLIKQMEATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGP 401
             A R+EMH+ A+LI QMEATQQAERKSMNKS AFANASHDIR ALAG+ GLI++C     P
Sbjct:   368 ATRREMHMRATLINQMEATQQAERKSMNKSQAFANASHDIRGALAGMKGLIDICRDGVKP 427

Query:   402 GSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIEEDFDVGELLEDVVDLFHPVA 461
             GS+++T L Q+NVCA DL+ LLNS+LD SK+E+GKMQL+EEDF++ +LLEDV+D +HPVA
Sbjct:   428 GSDVDTTLNQVNVCAKDLVALLNSVLDMSKIESGKMQLVEEDFNLSKLLEDVIDFYHPVA 487

Query:   462 MRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA 521
             M+KGV+VVLDP DGSV KFS V+GD  +LKQIL+NL+SNAVKFT +GHI+VRA  ++P +
Sbjct:   488 MKKGVDVVLDPHDGSVFKFSNVRGDSGRLKQILNNLVSNAVKFTVDGHIAVRAWAQRPGS 547

Query:   522 IGNPSLSSSRHGFLQSISCLFYKNKKARG--DLEAVNAAQRDENAMEFTFEVDDTGKGIP 579
               +  L+S   G  + +  +F KNK+     + E  N+ + + N MEF FEVDDTGKGIP
Sbjct:   548 NSSVVLASYPKGVSKFVKSMFCKNKEESSTYETEISNSIRNNANTMEFVFEVDDTGKGIP 607

Query:   580 KEKRKTVFENYVQVKXXXXXXXXXXX---IVQSLVRLMGGDIEIVDKENGERGTCFRFNV 636
              E RK+VFENYVQV+              IVQSLVRLMGG+I I DK  GE+GTCF+FNV
Sbjct:   608 MEMRKSVFENYVQVRETAQGHQGTGLGLGIVQSLVRLMGGEIRITDKAMGEKGTCFQFNV 667

Query:   637 FLAIREAS-ANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKAP-SPSLSIRTNSPRLN-I 693
              L   E+   +D   + E E AGGD  +      ++ LT+      S++IR  SPR N  
Sbjct:   668 LLTTLESPPVSDMKVRQEIE-AGGDYVS----TPNLGLTINTSLGGSMNIRNLSPRFNNC 722

Query:   694 LSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIH 753
             LS   + EGS VVLL+ NEERRR+ +K+++NLGI V+ V +WE L   L+RL   FG   
Sbjct:   723 LSSSPKQEGSRVVLLLKNEERRRVTEKYIKNLGIKVTVVEKWEHLSYALERL---FG--- 776

Query:   754 XXXXXXXXXXXXXXXXXXXXXFKEVPLSAMEGTEHKLQGYKRRGAP--SFILLVIDATAG 811
                                   +E+P   M+G + + Q  KRR     + +LLVIDA  G
Sbjct:   777 ---FSPQSSMGRAECSLSCPSSRELPFIGMDGIDSRSQLPKRRSISFSAVVLLVIDAKTG 833

Query:   812 PFLELFNIVAEFRRDLQ--CNCKVVWLDKPTSRSINFDGLEDETMDPNDDVLLKPFHGSR 869
             PF EL +IV +FRR L    +CKVVWL++ ++R            +  D    +P HGSR
Sbjct:   834 PFFELCDIVKQFRRGLPHGISCKVVWLNESSTR----------VSERGDISCSRPLHGSR 883

Query:   870 LYKVIKLLPEFGGVQSK 886
             L +V+K+LPEFGG   K
Sbjct:   884 LMEVLKMLPEFGGTVLK 900

GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;TAS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0004673 "protein histidine kinase activity" evidence=IEA;ISS;IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA;IDA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0018106 "peptidyl-histidine phosphorylation" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009736 "cytokinin mediated signaling pathway" evidence=TAS

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0080117 "secondary growth" evidence=IMP

GO:0009553 "embryo sac development" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR\|locus:2827836 HK1 "histidine kinase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_0718 GSU_0718 "sensory box histidine kinase/response regulator" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TAIR\|locus:2059718 WOL "WOODEN LEG" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_1084 CBU_1084 "sensory box sensor histidine kinase/response regulator" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_0859 SO_0859 "sensory box histidine kinase/response regulator" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_0132 SPO_0132 "sensor histidine kinase/response regulator" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_1265 GSU_1265 "sensor histidine kinase/response regulator" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TAIR\|locus:2177261 HK2 "histidine kinase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_0789 CBU_0789 "sensory box histidine kinase/response regulator" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O22267	CKI1_ARATH	2, ., 7, ., 1, 3, ., 3	0.4216	0.9301	0.9376	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.13	0.921
3rd Layer	2.7.13.3	0.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1131
COG0642		336	COG0642, BaeS, Signal transduction histidine kinas	5e-42
TIGR02956		968	TIGR02956, TMAO_torS, TMAO reductase sytem sensor	9e-41
PRK15347		921	PRK15347, PRK15347, two component system sensor ki	6e-34
PRK11107		919	PRK11107, PRK11107, hybrid sensory histidine kinas	1e-29
PRK11091		779	PRK11091, PRK11091, aerobic respiration control se	2e-28
cd00156		113	cd00156, REC, Signal receiver domain; originally t	6e-28
PRK11466		914	PRK11466, PRK11466, hybrid sensory histidine kinas	1e-25
COG0784		130	COG0784, CheY, FOG: CheY-like receiver [Signal tra	9e-25
TIGR02966		333	TIGR02966, phoR_proteo, phosphate regulon sensor k	1e-23
PRK10841		924	PRK10841, PRK10841, hybrid sensory kinase in two-c	5e-23
smart00387		111	smart00387, HATPase_c, Histidine kinase-like ATPas	1e-22
pfam00072		111	pfam00072, Response_reg, Response regulator receiv	4e-22
pfam02518		111	pfam02518, HATPase_c, Histidine kinase-, DNA gyras	1e-20
COG2205		890	COG2205, KdpD, Osmosensitive K+ channel histidine	1e-19
cd00075		103	cd00075, HATPase_c, Histidine kinase-like ATPases;	6e-19
PRK09959		1197	PRK09959, PRK09959, hybrid sensory histidine kinas	7e-19
PRK15347		921	PRK15347, PRK15347, two component system sensor ki	7e-17
COG4191		603	COG4191, COG4191, Signal transduction histidine ki	1e-16
COG0745		229	COG0745, OmpR, Response regulators consisting of a	3e-16
PRK11107		919	PRK11107, PRK11107, hybrid sensory histidine kinas	5e-15
PRK09303		380	PRK09303, PRK09303, adaptive-response sensory kina	2e-14
TIGR01386		457	TIGR01386, cztS_silS_copS, heavy metal sensor kina	2e-14
PRK11091		779	PRK11091, PRK11091, aerobic respiration control se	4e-14
PRK11100		475	PRK11100, PRK11100, sensory histidine kinase CreC;	4e-14
COG5002		459	COG5002, VicK, Signal transduction histidine kinas	2e-13
COG2197		211	COG2197, CitB, Response regulator containing a Che	7e-13
PRK09468		239	PRK09468, ompR, osmolarity response regulator; Pro	2e-12
PRK11360		607	PRK11360, PRK11360, sensory histidine kinase AtoS;	1e-11
COG3437		360	COG3437, COG3437, Response regulator containing a	3e-11
smart00448		55	smart00448, REC, cheY-homologous receiver domain	9e-11
COG2204		464	COG2204, AtoC, Response regulator containing CheY-	1e-10
PRK11006		430	PRK11006, phoR, phosphate regulon sensor protein;	1e-10
PRK10604		433	PRK10604, PRK10604, sensor protein RstB; Provision	5e-10
PRK10841		924	PRK10841, PRK10841, hybrid sensory kinase in two-c	9e-10
PRK09959		1197	PRK09959, PRK09959, hybrid sensory histidine kinas	9e-10
TIGR02154		226	TIGR02154, PhoB, phosphate regulon transcriptional	1e-09
PRK10490		895	PRK10490, PRK10490, sensor protein KdpD; Provision	2e-09
PRK10364		457	PRK10364, PRK10364, sensor protein ZraS; Provision	2e-09
CHL00148		240	CHL00148, orf27, Ycf27; Reviewed	5e-09
PRK13837		828	PRK13837, PRK13837, two-component VirA-like sensor	8e-09
PRK11361		457	PRK11361, PRK11361, acetoacetate metabolism regula	1e-08
COG4753		475	COG4753, COG4753, Response regulator containing Ch	2e-08
PRK09581		457	PRK09581, pleD, response regulator PleD; Reviewed	2e-08
COG3706		435	COG3706, PleD, Response regulator containing a Che	3e-08
TIGR02956		968	TIGR02956, TMAO_torS, TMAO reductase sytem sensor	6e-08
COG3852		363	COG3852, NtrB, Signal transduction histidine kinas	7e-08
COG4251		750	COG4251, COG4251, Bacteriophytochrome (light-regul	8e-08
COG3290		537	COG3290, CitA, Signal transduction histidine kinas	1e-07
PRK10955		232	PRK10955, PRK10955, DNA-binding transcriptional re	3e-07
PRK10610		129	PRK10610, PRK10610, chemotaxis regulatory protein	5e-07
PRK10816		223	PRK10816, PRK10816, DNA-binding transcriptional re	6e-07
smart00388		66	smart00388, HisKA, His Kinase A (phosphoacceptor)	7e-07
PRK09483		217	PRK09483, PRK09483, response regulator; Provisiona	7e-07
pfam00512		66	pfam00512, HisKA, His Kinase A (phospho-acceptor)	1e-06
PRK12555		337	PRK12555, PRK12555, chemotaxis-specific methyleste	1e-06
COG5000		712	COG5000, NtrY, Signal transduction histidine kinas	2e-06
PRK00742		354	PRK00742, PRK00742, chemotaxis-specific methyleste	3e-06
COG3279		244	COG3279, LytT, Response regulator of the LytR/AlgR	3e-06
PRK11073		348	PRK11073, glnL, nitrogen regulation protein NR(II)	6e-06
TIGR01818		463	TIGR01818, ntrC, nitrogen regulation protein NR(I)	7e-06
PRK09467		435	PRK09467, envZ, osmolarity sensor protein; Provisi	8e-06
PRK09835		482	PRK09835, PRK09835, sensor kinase CusS; Provisiona	1e-05
PRK11083		228	PRK11083, PRK11083, DNA-binding response regulator	1e-05
PRK15115		444	PRK15115, PRK15115, response regulator GlrR; Provi	1e-05
cd00082		65	cd00082, HisKA, Histidine Kinase A (dimerization/p	2e-05
PRK09470		461	PRK09470, cpxA, two-component sensor protein; Prov	2e-05
PLN03029		222	PLN03029, PLN03029, type-a response regulator prot	2e-05
COG3947		361	COG3947, COG3947, Response regulator containing Ch	7e-05
PRK10365		441	PRK10365, PRK10365, transcriptional regulatory pro	1e-04
COG2201		350	COG2201, CheB, Chemotaxis response regulator conta	2e-04
PRK09836		227	PRK09836, PRK09836, DNA-binding transcriptional ac	3e-04
PRK11517		223	PRK11517, PRK11517, transcriptional regulatory pro	4e-04
PRK10618		894	PRK10618, PRK10618, phosphotransfer intermediate p	5e-04
PRK10755		356	PRK10755, PRK10755, sensor protein BasS/PmrB; Prov	5e-04
PRK10815		485	PRK10815, PRK10815, sensor protein PhoQ; Provision	5e-04
PRK10549		466	PRK10549, PRK10549, signal transduction histidine-	7e-04
PRK10651		216	PRK10651, PRK10651, transcriptional regulator NarL	7e-04
PRK15053		545	PRK15053, dpiB, sensor histidine kinase DpiB; Prov	0.002
PRK15479		221	PRK15479, PRK15479, transcriptional regulatory pro	0.002
PRK10643		222	PRK10643, PRK10643, DNA-binding transcriptional re	0.004
TIGR02916		679	TIGR02916, PEP_his_kin, putative PEP-CTERM system	0.004
TIGR01387		218	TIGR01387, cztR_silR_copR, heavy metal response re	0.004

>gnl\|CDD\|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

 Score =  156 bits (396), Expect = 5e-42
 Identities = 99/349 (28%), Positives = 156/349 (44%), Gaps = 60/349 (17%)

Query: 298 ALAMPRKGLVSLVHRTSKRALILLIVMTVGVLISMLTFVFKSARAARKEMHLCASLIKQM 357
           A  +    L+ L+ R   R L+LL      +   +   V  S  +    +   A  + ++
Sbjct: 47  AALLVALLLLLLLLRRLLRPLLLLADAANALAAGLTRLVLASLGSELASL---AHALNEL 103

Query: 358 EATQQAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCAN 417
               +   +   +    AN SH++R  L  I GL+EL  +  G        L  +   A 
Sbjct: 104 LERLERLLRRAKREFL-ANISHELRTPLTAIRGLLEL--LLEGLLDPQRELLEIIEEEAE 160

Query: 418 DLLGLLNSILDTSKVEAG-KMQLIEEDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGS 476
            LL L+N +LD S++EAG K++L+ E  D+ ELLE+VV L  P+A  KG+E+ +D  +  
Sbjct: 161 RLLRLVNDLLDLSRLEAGTKLKLLLELVDLAELLEEVVRLLAPLAQEKGIELAVDLPELP 220

Query: 477 VLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSAIGNPSLSSSRHGFLQ 536
                 V GD  +L+Q+L NLLSNA+K+T  G I++                        
Sbjct: 221 Y-----VLGDPERLRQVLVNLLSNAIKYTPGGEITISV---------------------- 253

Query: 537 SISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKEG 596
                                    ++  + T  V+DTG GIP+E+ + +FE + +  + 
Sbjct: 254 ------------------------RQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKS 289

Query: 597 EGGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASA 645
             GTGLGL IV+ +V L GG I +  +    +GT F   + LA   A A
Sbjct: 290 RSGTGLGLAIVKRIVELHGGTISVESEPG--KGTTFTIRLPLAPAAADA 336

Length = 336

>gnl\|CDD\|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS	Back alignment and domain information

>gnl\|CDD\|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>gnl\|CDD\|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>gnl\|CDD\|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>gnl|CDD|238088 cd00156, REC, Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Back alignment and domain information

>gnl\|CDD\|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>gnl\|CDD\|223855 COG0784, CheY, FOG: CheY-like receiver [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR	Back alignment and domain information

>gnl\|CDD\|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>gnl\|CDD\|214643 smart00387, HATPase_c, Histidine kinase-like ATPases	Back alignment and domain information

>gnl\|CDD\|200976 pfam00072, Response_reg, Response regulator receiver domain	Back alignment and domain information

>gnl\|CDD\|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	Back alignment and domain information

>gnl\|CDD\|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>gnl\|CDD\|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>gnl\|CDD\|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>gnl\|CDD\|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|223816 COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>gnl\|CDD\|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>gnl\|CDD\|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated	Back alignment and domain information

>gnl\|CDD\|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase	Back alignment and domain information

>gnl\|CDD\|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>gnl\|CDD\|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional	Back alignment and domain information

>gnl\|CDD\|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|225107 COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>gnl\|CDD\|181883 PRK09468, ompR, osmolarity response regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional	Back alignment and domain information

>gnl\|CDD\|225971 COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|214668 smart00448, REC, cheY-homologous receiver domain	Back alignment and domain information

>gnl\|CDD\|225114 COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional	Back alignment and domain information

>gnl\|CDD\|236724 PRK10604, PRK10604, sensor protein RstB; Provisional	Back alignment and domain information

>gnl\|CDD\|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

>gnl\|CDD\|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>gnl\|CDD\|131209 TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB	Back alignment and domain information

>gnl\|CDD\|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional	Back alignment and domain information

>gnl\|CDD\|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional	Back alignment and domain information

>gnl\|CDD\|214376 CHL00148, orf27, Ycf27; Reviewed	Back alignment and domain information

>gnl\|CDD\|237526 PRK13837, PRK13837, two-component VirA-like sensor kinase; Provisional	Back alignment and domain information

>gnl\|CDD\|183099 PRK11361, PRK11361, acetoacetate metabolism regulatory protein AtoC; Provisional	Back alignment and domain information

>gnl\|CDD\|227095 COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|236577 PRK09581, pleD, response regulator PleD; Reviewed	Back alignment and domain information

>gnl\|CDD\|226229 COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS	Back alignment and domain information

>gnl\|CDD\|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|182864 PRK10955, PRK10955, DNA-binding transcriptional regulator CpxR; Provisional	Back alignment and domain information

>gnl\|CDD\|170568 PRK10610, PRK10610, chemotaxis regulatory protein CheY; Provisional	Back alignment and domain information

>gnl\|CDD\|182755 PRK10816, PRK10816, DNA-binding transcriptional regulator PhoP; Provisional	Back alignment and domain information

>gnl\|CDD\|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain	Back alignment and domain information

>gnl\|CDD\|236538 PRK09483, PRK09483, response regulator; Provisional	Back alignment and domain information

>gnl\|CDD\|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain	Back alignment and domain information

>gnl\|CDD\|237135 PRK12555, PRK12555, chemotaxis-specific methylesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|227333 COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|234828 PRK00742, PRK00742, chemotaxis-specific methylesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|225818 COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|182947 PRK11073, glnL, nitrogen regulation protein NR(II); Provisional	Back alignment and domain information

>gnl\|CDD\|233585 TIGR01818, ntrC, nitrogen regulation protein NR(I)	Back alignment and domain information

>gnl\|CDD\|236531 PRK09467, envZ, osmolarity sensor protein; Provisional	Back alignment and domain information

>gnl\|CDD\|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional	Back alignment and domain information

>gnl\|CDD\|236838 PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional	Back alignment and domain information

>gnl\|CDD\|185070 PRK15115, PRK15115, response regulator GlrR; Provisional	Back alignment and domain information

>gnl\|CDD\|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase	Back alignment and domain information

>gnl\|CDD\|236532 PRK09470, cpxA, two-component sensor protein; Provisional	Back alignment and domain information

>gnl\|CDD\|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional	Back alignment and domain information

>gnl\|CDD\|226456 COG3947, COG3947, Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|182412 PRK10365, PRK10365, transcriptional regulatory protein ZraR; Provisional	Back alignment and domain information

>gnl\|CDD\|225111 COG2201, CheB, Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>gnl\|CDD\|182102 PRK09836, PRK09836, DNA-binding transcriptional activator CusR; Provisional	Back alignment and domain information

>gnl\|CDD\|183172 PRK11517, PRK11517, transcriptional regulatory protein YedW; Provisional	Back alignment and domain information

>gnl\|CDD\|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>gnl\|CDD\|236751 PRK10755, PRK10755, sensor protein BasS/PmrB; Provisional	Back alignment and domain information

>gnl\|CDD\|182754 PRK10815, PRK10815, sensor protein PhoQ; Provisional	Back alignment and domain information

>gnl\|CDD\|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional	Back alignment and domain information

>gnl\|CDD\|182619 PRK10651, PRK10651, transcriptional regulator NarL; Provisional	Back alignment and domain information

>gnl\|CDD\|185013 PRK15053, dpiB, sensor histidine kinase DpiB; Provisional	Back alignment and domain information

>gnl\|CDD\|185376 PRK15479, PRK15479, transcriptional regulatory protein TctD; Provisional	Back alignment and domain information

>gnl\|CDD\|182612 PRK10643, PRK10643, DNA-binding transcriptional regulator BasR; Provisional	Back alignment and domain information

>gnl\|CDD\|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase	Back alignment and domain information

>gnl\|CDD\|130454 TIGR01387, cztR_silR_copR, heavy metal response regulator	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1131
PRK10841		924	hybrid sensory kinase in two-component regulatory	100.0
PRK11107		919	hybrid sensory histidine kinase BarA; Provisional	100.0
PRK15347		921	two component system sensor kinase SsrA; Provision	100.0
TIGR02956		968	TMAO_torS TMAO reductase sytem sensor TorS. This p	100.0
PRK11466		914	hybrid sensory histidine kinase TorS; Provisional	100.0
PRK11091		779	aerobic respiration control sensor protein ArcB; P	100.0
PRK09959		1197	hybrid sensory histidine kinase in two-component r	100.0
PRK13837		828	two-component VirA-like sensor kinase; Provisional	100.0
PRK10618		894	phosphotransfer intermediate protein in two-compon	100.0
KOG0519		786	consensus Sensory transduction histidine kinase [S	100.0
COG5002		459	VicK Signal transduction histidine kinase [Signal	100.0
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	100.0
PRK13557		540	histidine kinase; Provisional	100.0
PRK09303		380	adaptive-response sensory kinase; Validated	100.0
COG4191		603	Signal transduction histidine kinase regulating C4	100.0
PRK10815		485	sensor protein PhoQ; Provisional	100.0
PRK11006		430	phoR phosphate regulon sensor protein; Provisional	99.98
PRK10604		433	sensor protein RstB; Provisional	99.98
PRK09835		482	sensor kinase CusS; Provisional	99.98
TIGR03785		703	marine_sort_HK proteobacterial dedicated sortase s	99.97
PRK10364		457	sensor protein ZraS; Provisional	99.97
PRK10755		356	sensor protein BasS/PmrB; Provisional	99.97
PRK10490		895	sensor protein KdpD; Provisional	99.97
PRK10337		449	sensor protein QseC; Provisional	99.97
PRK10549		466	signal transduction histidine-protein kinase BaeS;	99.97
TIGR02938		494	nifL_nitrog nitrogen fixation negative regulator N	99.97
TIGR01386		457	cztS_silS_copS heavy metal sensor kinase. Members	99.97
PRK09470		461	cpxA two-component sensor protein; Provisional	99.96
PRK11100		475	sensory histidine kinase CreC; Provisional	99.96
PRK09467		435	envZ osmolarity sensor protein; Provisional	99.96
COG4251		750	Bacteriophytochrome (light-regulated signal transd	99.95
COG3852		363	NtrB Signal transduction histidine kinase, nitroge	99.95
TIGR02966		333	phoR_proteo phosphate regulon sensor kinase PhoR.	99.95
PRK11073		348	glnL nitrogen regulation protein NR(II); Provision	99.95
PRK11360		607	sensory histidine kinase AtoS; Provisional	99.94
COG0642		336	BaeS Signal transduction histidine kinase [Signal	99.93
TIGR02916		679	PEP_his_kin putative PEP-CTERM system histidine ki	99.92
PRK13560		807	hypothetical protein; Provisional	99.9
PRK11086		542	sensory histidine kinase DcuS; Provisional	99.9
PRK11644		495	sensory histidine kinase UhpB; Provisional	99.89
COG5000		712	NtrY Signal transduction histidine kinase involved	99.87
PRK15053		545	dpiB sensor histidine kinase DpiB; Provisional	99.87
COG4192		673	Signal transduction histidine kinase regulating ph	99.84
COG0745		229	OmpR Response regulators consisting of a CheY-like	99.83
PRK13559		361	hypothetical protein; Provisional	99.79
COG3290		537	CitA Signal transduction histidine kinase regulati	99.75
PF02518		111	HATPase_c: Histidine kinase-, DNA gyrase B-, and H	99.75
PRK10935		565	nitrate/nitrite sensor protein NarQ; Provisional	99.73
COG4753		475	Response regulator containing CheY-like receiver d	99.7
PF00072		112	Response_reg: Response regulator receiver domain;	99.69
COG2204		464	AtoC Response regulator containing CheY-like recei	99.68
COG3437		360	Response regulator containing a CheY-like receiver	99.67
PRK10600		569	nitrate/nitrite sensor protein NarX; Provisional	99.66
COG0784		130	CheY FOG: CheY-like receiver [Signal transduction	99.64
COG2197		211	CitB Response regulator containing a CheY-like rec	99.62
COG4566		202	TtrR Response regulator [Signal transduction mecha	99.62
COG4565		224	CitB Response regulator of citrate/malate metaboli	99.6
PRK10547		670	chemotaxis protein CheA; Provisional	99.58
COG3706		435	PleD Response regulator containing a CheY-like rec	99.56
PLN03029		222	type-a response regulator protein; Provisional	99.54
PRK10046		225	dpiA two-component response regulator DpiA; Provis	99.54
PRK09581		457	pleD response regulator PleD; Reviewed	99.53
PRK11173		237	two-component response regulator; Provisional	99.49
PRK10816		223	DNA-binding transcriptional regulator PhoP; Provis	99.49
PRK10529		225	DNA-binding transcriptional activator KdpE; Provis	99.48
PRK09836		227	DNA-binding transcriptional activator CusR; Provis	99.48
PRK09468		239	ompR osmolarity response regulator; Provisional	99.46
PRK10643		222	DNA-binding transcriptional regulator BasR; Provis	99.46
PRK10766		221	DNA-binding transcriptional regulator TorR; Provis	99.45
COG3947		361	Response regulator containing CheY-like receiver a	99.44
PRK10161		229	transcriptional regulator PhoB; Provisional	99.44
TIGR02154		226	PhoB phosphate regulon transcriptional regulatory	99.44
PRK10336		219	DNA-binding transcriptional regulator QseB; Provis	99.44
TIGR03787		227	marine_sort_RR proteobacterial dedicated sortase s	99.44
PRK10955		232	DNA-binding transcriptional regulator CpxR; Provis	99.43
PRK13856		241	two-component response regulator VirG; Provisional	99.43
PRK10701		240	DNA-binding transcriptional regulator RstA; Provis	99.43
PRK10430		239	DNA-binding transcriptional activator DcuR; Provis	99.43
PRK10840		216	transcriptional regulator RcsB; Provisional	99.41
TIGR02875		262	spore_0_A sporulation transcription factor Spo0A.	99.41
PRK11517		223	transcriptional regulatory protein YedW; Provision	99.4
PRK04184		535	DNA topoisomerase VI subunit B; Validated	99.4
COG4567		182	Response regulator consisting of a CheY-like recei	99.4
PRK11083		228	DNA-binding response regulator CreB; Provisional	99.4
TIGR01387		218	cztR_silR_copR heavy metal response regulator. Mem	99.39
PRK09958		204	DNA-binding transcriptional activator EvgA; Provis	99.36
CHL00148		240	orf27 Ycf27; Reviewed	99.36
smart00387		111	HATPase_c Histidine kinase-like ATPases. Histidine	99.35
PRK14084		246	two-component response regulator; Provisional	99.35
PRK10923		469	glnG nitrogen regulation protein NR(I); Provisiona	99.34
PRK15115		444	response regulator GlrR; Provisional	99.34
PRK09483		217	response regulator; Provisional	99.33
PRK11361		457	acetoacetate metabolism regulatory protein AtoC; P	99.32
PRK09935		210	transcriptional regulator FimZ; Provisional	99.32
PRK12555		337	chemotaxis-specific methylesterase; Provisional	99.31
TIGR02915		445	PEP_resp_reg putative PEP-CTERM system response re	99.31
PRK10365		441	transcriptional regulatory protein ZraR; Provision	99.3
PRK10360		196	DNA-binding transcriptional activator UhpA; Provis	99.29
TIGR01818		463	ntrC nitrogen regulation protein NR(I). This model	99.29
PRK10710		240	DNA-binding transcriptional regulator BaeR; Provis	99.28
PRK11697		238	putative two-component response-regulatory protein	99.28
PRK10100		216	DNA-binding transcriptional regulator CsgD; Provis	99.27
PRK15479		221	transcriptional regulatory protein TctD; Provision	99.26
PRK14868		795	DNA topoisomerase VI subunit B; Provisional	99.26
PRK00742		354	chemotaxis-specific methylesterase; Provisional	99.22
PRK09390		202	fixJ response regulator FixJ; Provisional	99.22
PF00512		68	HisKA: His Kinase A (phospho-acceptor) domain; Int	99.21
TIGR01052		488	top6b DNA topoisomerase VI, B subunit. This model	99.2
PRK11475		207	DNA-binding transcriptional activator BglJ; Provis	99.2
PRK09581		457	pleD response regulator PleD; Reviewed	99.19
COG2201		350	CheB Chemotaxis response regulator containing a Ch	99.18
PRK13558		665	bacterio-opsin activator; Provisional	99.15
TIGR01925		137	spIIAB anti-sigma F factor. This model describes t	99.14
cd00075		103	HATPase_c Histidine kinase-like ATPases; This fami	99.14
PRK15411		207	rcsA colanic acid capsular biosynthesis activation	99.14
PRK10403		215	transcriptional regulator NarP; Provisional	99.14
PRK10610		129	chemotaxis regulatory protein CheY; Provisional	99.14
PRK13435		145	response regulator; Provisional	99.13
PRK15369		211	two component system sensor kinase SsrB; Provision	99.13
PRK10651		216	transcriptional regulator NarL; Provisional	99.13
COG3707		194	AmiR Response regulator with putative antiterminat	99.1
PRK14867		659	DNA topoisomerase VI subunit B; Provisional	99.09
PRK03660		146	anti-sigma F factor; Provisional	99.05
PRK09191		261	two-component response regulator; Provisional	99.02
COG3851		497	UhpB Signal transduction histidine kinase, glucose	99.0
PRK10693		303	response regulator of RpoS; Provisional	98.97
COG4564		459	Signal transduction histidine kinase [Signal trans	98.96
cd00156		113	REC Signal receiver domain; originally thought to	98.91
COG4585		365	Signal transduction histidine kinase [Signal trans	98.89
COG3920		221	Signal transduction histidine kinase [Signal trans	98.87
COG2972		456	Predicted signal transduction protein with a C-ter	98.85
COG0643		716	CheA Chemotaxis protein histidine kinase and relat	98.82
COG3850		574	NarQ Signal transduction histidine kinase, nitrate	98.8
KOG0519		786	consensus Sensory transduction histidine kinase [S	98.71
PRK15029		755	arginine decarboxylase; Provisional	98.7
PRK04069		161	serine-protein kinase RsbW; Provisional	98.68
COG3279		244	LytT Response regulator of the LytR/AlgR family [T	98.62
TIGR01924		159	rsbW_low_gc serine-protein kinase RsbW. This model	98.42
COG3275		557	LytS Putative regulator of cell autolysis [Signal	98.37
smart00388		66	HisKA His Kinase A (phosphoacceptor) domain. Dimer	98.32
PF14501		100	HATPase_c_5: GHKL domain	98.32
KOG0787		414	consensus Dehydrogenase kinase [Signal transductio	98.28
PRK11107		919	hybrid sensory histidine kinase BarA; Provisional	98.21
cd00082		65	HisKA Histidine Kinase A (dimerization/phosphoacce	98.08
COG3706		435	PleD Response regulator containing a CheY-like rec	98.02
TIGR00585		312	mutl DNA mismatch repair protein MutL. All protein	97.81
PF13581		125	HATPase_c_2: Histidine kinase-like ATPase domain	97.43
COG1389		538	DNA topoisomerase VI, subunit B [DNA replication,	97.37
COG2172		146	RsbW Anti-sigma regulatory factor (Ser/Thr protein	96.95
PRK10618		894	phosphotransfer intermediate protein in two-compon	96.74
smart00448		55	REC cheY-homologous receiver domain. CheY regulate	96.64
PF06490		109	FleQ: Flagellar regulatory protein FleQ; InterPro:	96.6
PRK00095		617	mutL DNA mismatch repair protein; Reviewed	96.22
cd02071		122	MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin	96.2
PF13589		137	HATPase_c_3: Histidine kinase-, DNA gyrase B-, and	95.6
PRK02261		137	methylaspartate mutase subunit S; Provisional	95.55
TIGR00640		132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	93.6
cd02067		119	B12-binding B12 binding domain (B12-BD). This doma	92.48
PF00072		112	Response_reg: Response regulator receiver domain;	92.46
PRK15426		570	putative diguanylate cyclase YedQ; Provisional	91.71
COG0745		229	OmpR Response regulators consisting of a CheY-like	91.69
PF03709		115	OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal	91.44
PRK05559		631	DNA topoisomerase IV subunit B; Reviewed	90.87
TIGR01055		625	parE_Gneg DNA topoisomerase IV, B subunit, proteob	89.66
TIGR01059		654	gyrB DNA gyrase, B subunit. This model describes t	89.45
TIGR01501		134	MthylAspMutase methylaspartate mutase, S subunit.	88.27
COG0323		638	MutL DNA mismatch repair enzyme (predicted ATPase)	88.16
cd02072		128	Glm_B12_BD B12 binding domain of glutamate mutase	87.82
PRK05218		613	heat shock protein 90; Provisional	87.75
COG5381		184	Uncharacterized protein conserved in bacteria [Fun	86.64
TIGR03815		322	CpaE_hom_Actino helicase/secretion neighborhood Cp	86.56
COG4999		140	Uncharacterized domain of BarA-like signal transdu	85.9
COG4566		202	TtrR Response regulator [Signal transduction mecha	83.75
PRK14083		601	HSP90 family protein; Provisional	83.34
cd04728		248	ThiG Thiazole synthase (ThiG) is the tetrameric en	83.04
cd02069		213	methionine_synthase_B12_BD B12 binding domain of m	82.24
PRK05644		638	gyrB DNA gyrase subunit B; Validated	82.2
cd02070		201	corrinoid_protein_B12-BD B12 binding domain of cor	82.17
PF02310		121	B12-binding: B12 binding domain; InterPro: IPR0061	81.98
PRK00208		250	thiG thiazole synthase; Reviewed	81.88
COG2185		143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	80.43

>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.3e-54  Score=557.17  Aligned_cols=474  Identities=26%  Similarity=0.399  Sum_probs=345.7

Q ss_pred             HHHHHHHHHHHHHHHchHhhHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccee
Q 042553          362 QAERKSMNKSLAFANASHDIRAALAGITGLIELCYVEAGPGSELETNLRQMNVCANDLLGLLNSILDTSKVEAGKMQLIE  441 (1131)
Q Consensus       362 ~ae~~~~~ks~flA~iSHELRTPLt~I~g~~ell~~~~~~~~~~~~~l~~i~~~~~~Ll~LIndlLdlskie~g~~~l~~  441 (1131)
                      +++++++.|+.|+++|||||||||++|.|+++++... ...++.+++++.|..++++|..+|++|||++|++++++.++.
T Consensus       439 ~~e~a~~~k~~fla~iSHELRTPL~~I~g~lelL~~~-~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~~~~~l~~  517 (924)
T PRK10841        439 AAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTK-ELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEP  517 (924)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeee
Confidence            3455667788999999999999999999999987543 344677889999999999999999999999999999999999


Q ss_pred             eeecHHHHHHHHHHHHHHHHHcCCcEEEEccCCCCccccceEEeCHHHHHHHHHHHHHHHhhccCCCeEEEEEeecCCCC
Q 042553          442 EDFDVGELLEDVVDLFHPVAMRKGVEVVLDPSDGSVLKFSKVKGDRVKLKQILSNLLSNAVKFTSEGHISVRACVKKPSA  521 (1131)
Q Consensus       442 ~~~dL~~ll~~v~~~~~~~a~~k~i~l~~~~~~~~~~~~~~v~gD~~rL~QIL~NLL~NAiKfT~~G~I~v~~~~~~~~~  521 (1131)
                      ++|++.+++++++..+.+.+..|++.+.++.++...   ..+.+|+.+|+|||.|||+||+|||+.|.|.|.+...    
T Consensus       518 ~~~~l~~li~~v~~~~~~~~~~k~i~l~~~i~~~~~---~~v~~D~~~L~qvl~NLl~NAik~t~~G~I~I~v~~~----  590 (924)
T PRK10841        518 REFSPREVINHITANYLPLVVKKRLGLYCFIEPDVP---VALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRVD----  590 (924)
T ss_pred             EEecHHHHHHHHHHHHHHHHHHcCcEEEEEeCCCCC---cEEEECHHHHHHHHHHHHHHHHhhCCCCcEEEEEEEe----
Confidence            999999999999999999999999999877654322   3589999999999999999999999999888876431    


Q ss_pred             CCCCCCCCCccCcccchhhhhhccccccchhhhhhhhhccCCCcEEEEEEEecCCCCCcchHhhhccCCeecCC----CC
Q 042553          522 IGNPSLSSSRHGFLQSISCLFYKNKKARGDLEAVNAAQRDENAMEFTFEVDDTGKGIPKEKRKTVFENYVQVKE----GE  597 (1131)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~DtG~GI~~e~~~~IFe~F~q~~~----~~  597 (1131)
                                                                ...+.|+|.|||+||+++.++++|+||||.+.    ..
T Consensus       591 ------------------------------------------~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~~~~  628 (924)
T PRK10841        591 ------------------------------------------GDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNF  628 (924)
T ss_pred             ------------------------------------------CCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCCCCC
Confidence                                                      12578999999999999999999999999764    23


Q ss_pred             CCcccchHHHHHHHHHhCCEEEEEeecCCCccEEEEEEEeccccccccCCCCCcccccccCCCCCCCccccccccccccC
Q 042553          598 GGTGLGLGIVQSLVRLMGGDIEIVDKENGERGTCFRFNVFLAIREASANDNNTQGEKELAGGDSAAGDTQLQHMNLTVKA  677 (1131)
Q Consensus       598 ~GtGLGLsIvk~Lv~~~gG~I~v~s~~~gg~Gt~f~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1131)
                      +|+||||+|||+|+++|||+|+++|.+  |.||+|+|.+|+........                              .
T Consensus       629 ~GtGLGL~I~k~lv~~~gG~I~v~S~~--g~Gt~F~i~LP~~~~~~~~~------------------------------~  676 (924)
T PRK10841        629 QGTGLGLAICEKLINMMDGDISVDSEP--GMGSQFTIRIPLYGAQYPQK------------------------------K  676 (924)
T ss_pred             CCeehhHHHHHHHHHHCCCEEEEEEcC--CCcEEEEEEEECCccccccc------------------------------c
Confidence            699999999999999999999999875  46999999998752110000                              0


Q ss_pred             CCCCccccCCCCccccCCCCCCCCCCeEEEEEeCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHHhhhcCCCccccCC
Q 042553          678 PSPSLSIRTNSPRLNILSPGSRHEGSHVVLLIANEERRRIAQKFMENLGINVSAVSRWERLHSTLKRLKSKFGSIHSPHS  757 (1131)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vll~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  757 (1131)
                      +                  .....+.++.+..++......+..++..+|+.+........                .   
T Consensus       677 ~------------------~~~~~g~~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~~~~~----------------~---  719 (924)
T PRK10841        677 G------------------VEGLQGKRCWLAVRNASLEQFLETLLQRSGIQVQRYEGQEP----------------T---  719 (924)
T ss_pred             c------------------CcccCCCEEEEEcCCHHHHHHHHHHHHHCCCeEEEcccccC----------------C---
Confidence            0                  01234667888889999999999999999998865431100                0   


Q ss_pred             CCCCCCCCcCCCCccCCcccccccccccchhhhccccccCCCceEEEEecCCCcchHHHHHHHHHHhhhcccceeEEEcc
Q 042553          758 SLGKSDLSSRSDSESASFKEVPLSAMEGTEHKLQGYKRRGAPSFILLVIDATAGPFLELFNIVAEFRRDLQCNCKVVWLD  837 (1131)
Q Consensus       758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~vid~~~~~~~~~~~~~~~~~~~~~~~~~vv~l~  837 (1131)
                         ..                                       .+++.|............+ .+.            .
T Consensus       720 ---~~---------------------------------------d~~i~d~~~~~~~~~~~~~-~~~------------~  744 (924)
T PRK10841        720 ---PE---------------------------------------DVLITDDPVQKKWQGRAVI-TFC------------R  744 (924)
T ss_pred             ---cC---------------------------------------cEEEEcCccccccchhhhh-hhh------------h
Confidence               00                                       0000110000000000000 000            0


Q ss_pred             CCCccccccCCCccccCCCCCccccccccchhHHHHHhhcCccCCcccccccccccccCCCCCcCCCcccCCcCcccccc
Q 042553          838 KPTSRSINFDGLEDETMDPNDDVLLKPFHGSRLYKVIKLLPEFGGVQSKRHGKASRDAGSSSYSKHPYRTGKSRSKAGRH  917 (1131)
Q Consensus       838 ~~~~~~i~~~~l~~~~~~~~~~~l~kP~~~s~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  917 (1131)
                      .+...       ...  ......+.+|.....+...+..+......                                  
T Consensus       745 ~~~~~-------~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~----------------------------------  781 (924)
T PRK10841        745 RHIGI-------PLE--IAPGEWVHSTATPHELPALLARIYRIELE----------------------------------  781 (924)
T ss_pred             ccccC-------hhh--cccCceeeccCChHHHHHHHHHHhhcccc----------------------------------
Confidence            00000       000  00011122333333333332211000000                                  


Q ss_pred             cccccCCCCccccccccCCcchhhhhcCCCCCCCCCccCCCCcccccccCCCCCCCCcceeecccccccccccccCCCCC
Q 042553          918 EIQEEGSSSSEHSRRDIMPNASVLLKTGNSSGEGPRRDIMPNASVLLKTGNSSGEGSSRYKQTEIEEEDGERSQAQKPLR  997 (1131)
Q Consensus       918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  997 (1131)
                                       .+.             .+..  .+                             ..........
T Consensus       782 -----------------~~~-------------~~~~--~~-----------------------------~~~~~~~~~~  800 (924)
T PRK10841        782 -----------------SDD-------------SANA--LP-----------------------------STDKAVSDND  800 (924)
T ss_pred             -----------------ccc-------------cccc--cc-----------------------------ccccccccCC
Confidence                             000             0000  00                             0000011123


Q ss_pred             CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCCCCCCCCCCCCccEEEEcCCCCCCCHHHHHHHH
Q 042553          998 GKKILVADDSMMLRRVAEINLRHLGATVEACENGEAALQLVRSGLNDQRDLGAPHILPYDYILMDCEMPIMNGYEATRKI 1077 (1131)
Q Consensus       998 ~~~ILvvdD~~~~~~~l~~~L~~~g~~v~~a~ng~eAl~~~~~~~~~~~~~~~~~~~~~DlILmDi~MP~mdG~e~~r~I 1077 (1131)
                      +.+||||||++.++..+..+|++.||.|..|.||++|++.+.+.             +||+||||++||+|||++++++|
T Consensus       801 ~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~-------------~~DlVl~D~~mP~mdG~el~~~i  867 (924)
T PRK10841        801 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN-------------HIDIVLTDVNMPNMDGYRLTQRL  867 (924)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC-------------CCCEEEEcCCCCCCCHHHHHHHH
Confidence            56899999999999999999999999999999999999999763             79999999999999999999999


Q ss_pred             hhhhccCCCCccEEEEcccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Q 042553         1078 REEEKRNQVHIPIIALTAHISGEEADKTIEAGMDVHLGKPLNRDHLMEAIKYL 1130 (1131)
Q Consensus      1078 R~~~~~~~~~ipIIalTa~~~~~~~~~~l~aG~d~yL~KP~~~~~L~~~I~~l 1130 (1131)
                      |+..    +.+|||++|++...++..+|+++||++||.||++.++|..+|..+
T Consensus       868 r~~~----~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~  916 (924)
T PRK10841        868 RQLG----LTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVY  916 (924)
T ss_pred             HhcC----CCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHH
Confidence            9853    468999999999999999999999999999999999999988754

>PRK11107 hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>PRK15347 two component system sensor kinase SsrA; Provisional	Back alignment and domain information

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS	Back alignment and domain information

>PRK11466 hybrid sensory histidine kinase TorS; Provisional	Back alignment and domain information

>PRK11091 aerobic respiration control sensor protein ArcB; Provisional	Back alignment and domain information

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional	Back alignment and domain information

>PRK13837 two-component VirA-like sensor kinase; Provisional	Back alignment and domain information

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK13557 histidine kinase; Provisional	Back alignment and domain information

>PRK09303 adaptive-response sensory kinase; Validated	Back alignment and domain information

>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	Back alignment and domain information

>PRK10815 sensor protein PhoQ; Provisional	Back alignment and domain information

>PRK11006 phoR phosphate regulon sensor protein; Provisional	Back alignment and domain information

>PRK10604 sensor protein RstB; Provisional	Back alignment and domain information

>PRK09835 sensor kinase CusS; Provisional	Back alignment and domain information

>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase	Back alignment and domain information

>PRK10364 sensor protein ZraS; Provisional	Back alignment and domain information

>PRK10755 sensor protein BasS/PmrB; Provisional	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>PRK10337 sensor protein QseC; Provisional	Back alignment and domain information

>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional	Back alignment and domain information

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL	Back alignment and domain information

>TIGR01386 cztS_silS_copS heavy metal sensor kinase	Back alignment and domain information

>PRK09470 cpxA two-component sensor protein; Provisional	Back alignment and domain information

>PRK11100 sensory histidine kinase CreC; Provisional	Back alignment and domain information

>PRK09467 envZ osmolarity sensor protein; Provisional	Back alignment and domain information

>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	Back alignment and domain information

>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	Back alignment and domain information

>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR	Back alignment and domain information

>PRK11073 glnL nitrogen regulation protein NR(II); Provisional	Back alignment and domain information

>PRK11360 sensory histidine kinase AtoS; Provisional	Back alignment and domain information

>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase	Back alignment and domain information

>PRK13560 hypothetical protein; Provisional	Back alignment and domain information

>PRK11086 sensory histidine kinase DcuS; Provisional	Back alignment and domain information

>PRK11644 sensory histidine kinase UhpB; Provisional	Back alignment and domain information

>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]	Back alignment and domain information

>PRK15053 dpiB sensor histidine kinase DpiB; Provisional	Back alignment and domain information

>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]	Back alignment and domain information

>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>PRK13559 hypothetical protein; Provisional	Back alignment and domain information

>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	Back alignment and domain information

>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional	Back alignment and domain information

>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	Back alignment and domain information

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []	Back alignment and domain information

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	Back alignment and domain information

>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>PRK10600 nitrate/nitrite sensor protein NarX; Provisional	Back alignment and domain information

>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]	Back alignment and domain information

>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>COG4566 TtrR Response regulator [Signal transduction mechanisms]	Back alignment and domain information

>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>PRK10547 chemotaxis protein CheA; Provisional	Back alignment and domain information

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	Back alignment and domain information

>PLN03029 type-a response regulator protein; Provisional	Back alignment and domain information

>PRK10046 dpiA two-component response regulator DpiA; Provisional	Back alignment and domain information

>PRK09581 pleD response regulator PleD; Reviewed	Back alignment and domain information

>PRK11173 two-component response regulator; Provisional	Back alignment and domain information

>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional	Back alignment and domain information

>PRK10529 DNA-binding transcriptional activator KdpE; Provisional	Back alignment and domain information

>PRK09836 DNA-binding transcriptional activator CusR; Provisional	Back alignment and domain information

>PRK09468 ompR osmolarity response regulator; Provisional	Back alignment and domain information

>PRK10643 DNA-binding transcriptional regulator BasR; Provisional	Back alignment and domain information

>PRK10766 DNA-binding transcriptional regulator TorR; Provisional	Back alignment and domain information

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]	Back alignment and domain information

>PRK10161 transcriptional regulator PhoB; Provisional	Back alignment and domain information

>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB	Back alignment and domain information

>PRK10336 DNA-binding transcriptional regulator QseB; Provisional	Back alignment and domain information

>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator	Back alignment and domain information

>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional	Back alignment and domain information

>PRK13856 two-component response regulator VirG; Provisional	Back alignment and domain information

>PRK10701 DNA-binding transcriptional regulator RstA; Provisional	Back alignment and domain information

>PRK10430 DNA-binding transcriptional activator DcuR; Provisional	Back alignment and domain information

>PRK10840 transcriptional regulator RcsB; Provisional	Back alignment and domain information

>TIGR02875 spore_0_A sporulation transcription factor Spo0A	Back alignment and domain information

>PRK11517 transcriptional regulatory protein YedW; Provisional	Back alignment and domain information

>PRK04184 DNA topoisomerase VI subunit B; Validated	Back alignment and domain information

>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>PRK11083 DNA-binding response regulator CreB; Provisional	Back alignment and domain information

>TIGR01387 cztR_silR_copR heavy metal response regulator	Back alignment and domain information

>PRK09958 DNA-binding transcriptional activator EvgA; Provisional	Back alignment and domain information

>CHL00148 orf27 Ycf27; Reviewed	Back alignment and domain information

>smart00387 HATPase_c Histidine kinase-like ATPases	Back alignment and domain information

>PRK14084 two-component response regulator; Provisional	Back alignment and domain information

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional	Back alignment and domain information

>PRK15115 response regulator GlrR; Provisional	Back alignment and domain information

>PRK09483 response regulator; Provisional	Back alignment and domain information

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional	Back alignment and domain information

>PRK09935 transcriptional regulator FimZ; Provisional	Back alignment and domain information

>PRK12555 chemotaxis-specific methylesterase; Provisional	Back alignment and domain information

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator	Back alignment and domain information

>PRK10365 transcriptional regulatory protein ZraR; Provisional	Back alignment and domain information

>PRK10360 DNA-binding transcriptional activator UhpA; Provisional	Back alignment and domain information

>TIGR01818 ntrC nitrogen regulation protein NR(I)	Back alignment and domain information

>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional	Back alignment and domain information

>PRK11697 putative two-component response-regulatory protein YehT; Provisional	Back alignment and domain information

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional	Back alignment and domain information

>PRK15479 transcriptional regulatory protein TctD; Provisional	Back alignment and domain information

>PRK14868 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>PRK00742 chemotaxis-specific methylesterase; Provisional	Back alignment and domain information

>PRK09390 fixJ response regulator FixJ; Provisional	Back alignment and domain information

>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []	Back alignment and domain information

>TIGR01052 top6b DNA topoisomerase VI, B subunit	Back alignment and domain information

>PRK11475 DNA-binding transcriptional activator BglJ; Provisional	Back alignment and domain information

>PRK09581 pleD response regulator PleD; Reviewed	Back alignment and domain information

>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>PRK13558 bacterio-opsin activator; Provisional	Back alignment and domain information

>TIGR01925 spIIAB anti-sigma F factor	Back alignment and domain information

>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins	Back alignment and domain information

>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional	Back alignment and domain information

>PRK10403 transcriptional regulator NarP; Provisional	Back alignment and domain information

>PRK10610 chemotaxis regulatory protein CheY; Provisional	Back alignment and domain information

>PRK13435 response regulator; Provisional	Back alignment and domain information

>PRK15369 two component system sensor kinase SsrB; Provisional	Back alignment and domain information

>PRK10651 transcriptional regulator NarL; Provisional	Back alignment and domain information

>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]	Back alignment and domain information

>PRK14867 DNA topoisomerase VI subunit B; Provisional	Back alignment and domain information

>PRK03660 anti-sigma F factor; Provisional	Back alignment and domain information

>PRK09191 two-component response regulator; Provisional	Back alignment and domain information

>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]	Back alignment and domain information

>PRK10693 response regulator of RpoS; Provisional	Back alignment and domain information

>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Back alignment and domain information

>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	Back alignment and domain information

>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	Back alignment and domain information

>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]	Back alignment and domain information

>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK15029 arginine decarboxylase; Provisional	Back alignment and domain information

>PRK04069 serine-protein kinase RsbW; Provisional	Back alignment and domain information

>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	Back alignment and domain information

>TIGR01924 rsbW_low_gc serine-protein kinase RsbW	Back alignment and domain information

>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]	Back alignment and domain information

>smart00388 HisKA His Kinase A (phosphoacceptor) domain	Back alignment and domain information

>PF14501 HATPase_c_5: GHKL domain	Back alignment and domain information

>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK11107 hybrid sensory histidine kinase BarA; Provisional	Back alignment and domain information

>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase	Back alignment and domain information

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	Back alignment and domain information

>TIGR00585 mutl DNA mismatch repair protein MutL	Back alignment and domain information

>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain	Back alignment and domain information

>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]	Back alignment and domain information

>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	Back alignment and domain information

>smart00448 REC cheY-homologous receiver domain	Back alignment and domain information

>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e	Back alignment and domain information

>PRK00095 mutL DNA mismatch repair protein; Reviewed	Back alignment and domain information

>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain	Back alignment and domain information

>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B	Back alignment and domain information

>PRK02261 methylaspartate mutase subunit S; Provisional	Back alignment and domain information

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain	Back alignment and domain information

>cd02067 B12-binding B12 binding domain (B12-BD)	Back alignment and domain information

>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []	Back alignment and domain information

>PRK15426 putative diguanylate cyclase YedQ; Provisional	Back alignment and domain information

>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	Back alignment and domain information

>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure	Back alignment and domain information

>PRK05559 DNA topoisomerase IV subunit B; Reviewed	Back alignment and domain information

>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial	Back alignment and domain information

>TIGR01059 gyrB DNA gyrase, B subunit	Back alignment and domain information

>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit	Back alignment and domain information

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm)	Back alignment and domain information

>PRK05218 heat shock protein 90; Provisional	Back alignment and domain information

>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein	Back alignment and domain information

>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]	Back alignment and domain information

>COG4566 TtrR Response regulator [Signal transduction mechanisms]	Back alignment and domain information

>PRK14083 HSP90 family protein; Provisional	Back alignment and domain information

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism	Back alignment and domain information

>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase	Back alignment and domain information

>PRK05644 gyrB DNA gyrase subunit B; Validated	Back alignment and domain information

>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins	Back alignment and domain information

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)	Back alignment and domain information

>PRK00208 thiG thiazole synthase; Reviewed	Back alignment and domain information

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1131
3mm4_A		206	Crystal Structure Of The Receiver Domain Of The His		1e-29
3dge_C		122	Structure Of A Histidine Kinase-response Regulator		4e-11
3gl9_A		122	The Structure Of A Histidine Kinase-Response Regula		3e-10
4euk_A		153	Crystal Structure Length = 153		6e-10
2ayz_A		133	Solution Structure Of The E.Coli Rcsc C-Terminus (R		1e-08
2ayx_A		254	Solution Structure Of The E.Coli Rcsc C-Terminus (R		2e-08
3f6p_A		120	Crystal Structure Of Unphosphorelated Receiver Doma		3e-08
2zwm_A		130	Crystal Structure Of Yycf Receiver Domain From Baci		3e-08
3to5_A		134	High Resolution Structure Of Chey3 From Vibrio Chol		8e-08
1m5t_A		124	Crystal Structure Of The Response Regulator Divk Le		2e-07
3c97_A		140	Crystal Structure Of The Response Regulator Receive		5e-07
4ew8_A		268	Crystal Structure Of A C-Terminal Part Of Tyrosine		9e-07
3kht_A		144	Crystal Structure Of Response Regulator From Hahell		1e-06
3a0u_A		116	Crystal Structure Of Response Regulator Protein Trr		1e-06
3h1g_A		129	Crystal Structure Of Chey Mutant T84a Of Helicobact		2e-06
3ffx_A		128	Crystal Structure Of Chey Triple Mutant F14e, N59r,		6e-06
3gwg_A		129	Crystal Structure Of Chey Of Helicobacter Pylori Le		7e-06
3nnn_A		122	Bef3 Activated Drrd Receiver Domain Length = 122		9e-06
3a0r_B		116	Crystal Structure Of Histidine Kinase Thka (Tm1359)		9e-06
3rvn_A		132	Structure Of The Chey-Bef3 Complex With Substitutio		2e-05
3ffw_A		128	Crystal Structure Of Chey Triple Mutant F14q, N59k,		2e-05
3rvj_A		132	Structure Of The Chey-Bef3 Complex With Substitutio		3e-05
2r25_B		133	Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef		3e-05
1oxb_B		134	Complex Between Ypd1 And Sln1 Response Regulator Do		3e-05
3rvl_A		132	Structure Of The Chey-Bef3 Complex With Substitutio		4e-05
1udr_A		129	Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Rep		4e-05
3rvp_A		132	Structure Of The Chey-Bef3 Complex With Substitutio		4e-05
1ab5_A		125	Structure Of Chey Mutant F14n, V21t Length = 125		4e-05
1cye_A		129	Three Dimensional Structure Of Chemotactic Che Y Pr		5e-05
1kgs_A		225	Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG		5e-05
3fft_A		128	Crystal Structure Of Chey Double Mutant F14e, E89r		6e-05
1mvo_A		136	Crystal Structure Of The Phop Receiver Domain From		6e-05
1d4z_A		128	Crystal Structure Of Chey-95iv, A Hyperactive Chey		7e-05
2chy_A		128	Three-Dimensional Structure Of Chey, The Response R		7e-05
3m6m_D		143	Crystal Structure Of Rpff Complexed With Rec Domain		7e-05
3h1f_A		129	Crystal Structure Of Chey Mutant D53a Of Helicobact		7e-05
1ab6_A		125	Structure Of Chey Mutant F14n, V86t Length = 125		8e-05
1cey_A		128	Assignments, Secondary Structure, Global Fold, And		8e-05
1mih_A		129	A Role For Chey Glu 89 In Chez-Mediated Dephosphory		9e-05
3fgz_A		128	Crystal Structure Of Chey Triple Mutant F14e, N59m,		9e-05
1djm_A		129	Solution Structure Of Bef3-Activated Chey From Esch		9e-05
3oo0_A		129	Structure Of Apo Chey A113p Length = 129		9e-05
1eay_A		128	Chey-Binding (P2) Domain Of Chea In Complex With Ch		9e-05
3myy_A		128	Structure Of E. Coli Chey Mutant A113p Bound To Ber		9e-05
2che_A		128	Structure Of The Mg2+-Bound Form Of Chey And Mechan		1e-04
2fka_A		129	Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Che		1e-04
1nxo_A		120	Micarec Ph7.0 Length = 120		1e-04
1jbe_A		128	1.08 A Structure Of Apo-Chey Reveals Meta-Active Co		1e-04
3nhz_A		125	Structure Of N-Terminal Domain Of Mtra Length = 125		1e-04
3f7n_A		128	Crystal Structure Of Chey Triple Mutant F14e, N59m,		2e-04
3olx_A		129	Structural And Functional Effects Of Substitution A		2e-04
5chy_A		128	Structure Of Chemotaxis Protein Chey Length = 128		2e-04
3olv_A		129	Structural And Functional Effects Of Substitution A		2e-04
3olw_A		129	Structural And Functional Effects Of Substitution A		3e-04
1ymu_A		130	Signal Transduction Protein Chey Mutant With Met 17		3e-04
3oly_A		129	Structural And Functional Effects Of Substitution A		3e-04
1vlz_A		128	Uncoupled Phosphorylation And Activation In Bacteri		3e-04
1ymv_A		129	Signal Transduction Protein Chey Mutant With Phe 14		4e-04
1e6m_A		128	Two-Component Signal Transduction System D57a Mutan		4e-04
3t6k_A		136	Crystal Structure Of A Hypothetical Response Regula		4e-04
1e6k_A		130	Two-Component Signal Transduction System D12a Mutan		5e-04
1ehc_A		128	Structure Of Signal Transduction Protein Chey Lengt		6e-04
1p2f_A		220	Crystal Structure Analysis Of Response Regulator Dr		6e-04
3nns_A		117	Bef3 Activated Drrb Receiver Domain Length = 117		6e-04
3a0r_A		349	Crystal Structure Of Histidine Kinase Thka (Tm1359)		7e-04
1dcf_A		136	Crystal Structure Of The Receiver Domain Of The Eth		7e-04
1zdm_A		129	Crystal Structure Of Activated Chey Bound To Xe Len		7e-04
1c4w_A		128	1.9 A Structure Of A-Thiophosphonate Modified Chey		7e-04
3dge_A		258	Structure Of A Histidine Kinase-response Regulator		7e-04
2c2a_A		258	Structure Of The Entire Cytoplasmic Portion Of A Se		7e-04
1e6l_A		127	Two-Component Signal Transduction System D13a Mutan		8e-04
1nxt_A		120	Micarec Ph 4.0 Length = 120		8e-04
3eod_A		130	Crystal Structure Of N-Terminal Domain Of E. Coli R		9e-04

>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine Kinase Cki1 From Arabidopsis Thaliana Length = 206